ONTOLOGY REPORT - ANNOTATIONS
Term: B cell mediated immunity
Accession: GO:0019724
browse the term
Definition: Any process involved with the carrying out of an immune response by a B cell, through, for instance, the production of antibodies or cytokines, or antigen presentation to T cells.
Synonyms: exact_synonym: B lymphocyte mediated immune effector process; B lymphocyte mediated immunity; B-cell mediated immune effector process
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Cd19
CD19 molecule
involved_in
ISO
(MGI:74944|PMID:7543183)
RGD
PMID:7543183
MGI:74944
NCBI chr 1:180,987,286...180,993,920
Ensembl chr 1:180,987,286...180,993,975
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Cd40
CD40 molecule
involved_in
ISO
MGI:2143599|MGI:88336 (MGI:3805407|PMID:18624351)
RGD
PMID:18624351
MGI:3805407
NCBI chr 3:153,790,372...153,805,279
Ensembl chr 3:153,790,449...153,805,534
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Cd70
Cd70 molecule
involved_in
ISO
(PMID:28011863), (PMID:28011864)
RGD
PMID:28011863 PMID:28011864
NCBI chr 9:2,006,563...2,009,715
Ensembl chr 9:2,006,563...2,009,715
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Fas
Fas cell surface death receptor
acts_upstream_of_or_within
ISO
(MGI:3773559|PMID:18199416)
RGD
PMID:18199416
MGI:3773559
NCBI chr 1:231,798,963...231,832,591
Ensembl chr 1:231,798,960...231,832,591
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Msh2
mutS homolog 2
acts_upstream_of_or_within
ISO
MGI:1857940|MGI:1858055 (MGI:1275867|PMID:9697843), (MGI:1329767|PMID:9927509)
RGD
PMID:9697843 PMID:9927509
MGI:1275867 MGI:1329767
NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
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Ntn1
netrin 1
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr10:52,899,933...53,098,591
Ensembl chr10:52,899,934...53,085,326
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Pirb
paired Ig-like receptor B
acts_upstream_of_or_within
ISO
MGI:2180757 (MGI:2180258|PMID:12021780)
RGD
PMID:12021780
MGI:2180258
NCBI chr 1:65,499,195...65,506,666
Ensembl chr 1:65,499,195...65,506,666
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Traf3ip2
Traf3 interacting protein 2
involved_in
ISO
MGI:2143599|MGI:88336 (MGI:3805407|PMID:18624351)
RGD
PMID:18624351
MGI:3805407
NCBI chr20:43,011,405...43,054,654
Ensembl chr20:43,011,450...43,054,667
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Fcgr1a
Fc gamma receptor 1A
acts_upstream_of_or_within involved_in
ISO
MGI:2664927|MGI:2679238 (MGI:2664488|PMID:11911824), (MGI:2679189|PMID:11911823) (PMID:11711607)
RGD
PMID:11711607 PMID:11911823 PMID:11911824
MGI:2664488 MGI:2679189
NCBI chr 2:183,851,075...183,860,077
Ensembl chr 2:183,851,077...183,859,994
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Fcgr2a
Fc gamma receptor 2A
acts_upstream_of_or_within
ISO
MGI:1861924 (MGI:2683749|PMID:9743367), (MGI:82508|PMID:8769481)
RGD
PMID:8769481 PMID:9743367
MGI:2683749 MGI:82508
NCBI chr13:83,280,782...83,297,535
Ensembl chr13:83,280,784...83,295,967
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Fcgr3a
Fc gamma receptor 3A
involved_in
ISO
(PMID:11711607), (PMID:27670158) (PMID:11711607), (PMID:27670158), (PMID:28652325)
RGD
PMID:11711607 PMID:27670158 PMID:28652325
NCBI chr13:83,249,905...83,259,921
Ensembl chr13:83,249,872...83,259,921
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Ighg1
immunoglobulin heavy constant gamma 1
acts_upstream_of_or_within involved_in
ISO
(MGI:2683749|PMID:9743367) (PMID:11711607)
RGD
PMID:9743367 PMID:11711607
MGI:2683749
Ensembl chr 6:132,389,370...132,393,397
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Btk
Bruton tyrosine kinase
acts_upstream_of_or_within
ISO
MGI:1856317 (MGI:65977|PMID:7680896)
RGD
PMID:7680896
MGI:65977
NCBI chr X:97,722,796...97,762,315
Ensembl chr X:97,722,802...97,761,853
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RT1-Bb
RT1 class II, locus Bb
involved_in
ISO
(MGI:4943414|PMID:1378867)
RGD
PMID:1378867
MGI:4943414
NCBI chr20:4,596,558...4,602,201
Ensembl chr20:4,596,559...4,607,597
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Traf3ip2
Traf3 interacting protein 2
involved_in
ISO
MGI:3510784 (MGI:4460017|PMID:20543113)
RGD
PMID:20543113
MGI:4460017
NCBI chr20:43,011,405...43,054,654
Ensembl chr20:43,011,450...43,054,667
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AABR07006691.1
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
Ensembl chr 1:228,016,498...228,043,066
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AABR07065781.1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:134,488,094...134,488,587
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AABR07065782.1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:134,539,974...134,540,303
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AABR07065789.1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:134,872,774...134,873,270
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AABR07065808.1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:135,178,938...135,179,469
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AABR07065812.2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:135,387,664...135,388,140
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AABR07065813.1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:135,538,767...135,568,573
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AABR07065814.2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:135,592,956...135,593,464
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AABR07065823.2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:136,095,796...136,096,294
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AC109737.1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 4:70,417,612...70,418,013
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C1qa
complement C1q A chain
acts_upstream_of_or_within involved_in
ISO IEA
MGI:2158701 (MGI:2177393|PMID:11901193) GO_REF:0000107 (PMID:29449492)
RGD Ensembl
PMID:11901193 PMID:29449492
GO_REF:0000107 MGI:2177393
NCBI chr 5:149,133,635...149,136,482
Ensembl chr 5:149,133,636...149,136,534
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C1qb
complement C1q B chain
involved_in
ISO
(PMID:29449492)
RGD
PMID:29449492
NCBI chr 5:149,118,843...149,124,394
Ensembl chr 5:149,118,846...149,124,407
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C1qbp
complement C1q binding protein
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr10:55,699,954...55,704,605
Ensembl chr10:55,699,954...55,704,649
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C1qc
complement C1q C chain
involved_in
ISO IEA
(PMID:29449492) GO_REF:0000107
RGD Ensembl
PMID:29449492
GO_REF:0000107
NCBI chr 5:149,127,424...149,130,732
Ensembl chr 5:149,127,415...149,131,017
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C1rl
complement C1r subcomponent like
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 4:157,394,183...157,410,771
Ensembl chr 4:157,394,200...157,410,134
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C1s
complement C1s
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 4:157,430,249...157,442,438
Ensembl chr 4:157,430,117...157,442,303
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C2
complement C2
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr20:3,951,474...3,970,376
Ensembl chr20:3,951,474...3,976,505
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C3
complement C3
involved_in
TAS IEA
GO_REF:0000043
UniProt RGD
PMID:16996480
GO_REF:0000043, RGD:1600605
NCBI chr 9:2,087,437...2,114,366
Ensembl chr 9:2,087,437...2,114,429
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C4a
complement C4A
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr20:4,005,731...4,020,083
Ensembl chr20:4,005,731...4,020,080
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C4b
complement C4B (Chido blood group)
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr20:4,197,371...4,211,684
Ensembl chr20:4,197,366...4,211,681
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C4bpa
complement component 4 binding protein, alpha
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr13:42,075,715...42,111,205
Ensembl chr13:42,075,717...42,111,205
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C4bpb
complement component 4 binding protein, beta
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr13:42,120,798...42,131,515
Ensembl chr13:42,120,798...42,131,817
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C5
complement C5
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 3:18,270,696...18,361,994
Ensembl chr 3:18,270,696...18,361,994
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C6
complement C6
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 2:53,846,027...53,921,279
Ensembl chr 2:53,851,985...53,921,275
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C8a
complement C8 alpha chain
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 5:119,583,168...119,637,675
Ensembl chr 5:119,583,174...119,637,754
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C8b
complement C8 beta chain
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 5:119,535,009...119,572,565
Ensembl chr 5:119,535,146...119,572,565
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C9
complement C9
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 2:55,573,094...55,621,345
Ensembl chr 2:55,572,992...55,621,338
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Cfb
complement factor B
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr20:3,970,643...3,976,510
Ensembl chr20:3,951,474...3,976,505
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Cfi
complement factor I
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 2:218,389,079...218,430,565
Ensembl chr 2:218,387,990...218,430,561
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Cr1l
complement C3b/C4b receptor 1 like
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr13:106,606,952...106,660,442
Ensembl chr13:106,574,858...106,660,445
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Crp
C-reactive protein
IMP
RGD
PMID:16367929
RGD:1580273
NCBI chr13:85,131,635...85,175,179
Ensembl chr13:85,124,977...85,175,178
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ENSRNOG00000062324
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:136,773,301...136,773,764
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ENSRNOG00000065283
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:134,800,826...134,801,328
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ENSRNOG00000066076
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:135,829,858...135,830,364
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ENSRNOG00000066380
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:134,657,094...134,657,417
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ENSRNOG00000066892
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:134,160,101...134,160,632
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ENSRNOG00000067010
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:136,881,681...136,882,341
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ENSRNOG00000068279
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:134,906,155...134,906,642
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ENSRNOG00000068413
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:135,721,402...135,721,710
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ENSRNOG00000068908
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:135,089,336...135,089,786
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ENSRNOG00000069071
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:135,988,836...135,989,350
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ENSRNOG00000069250
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:135,916,486...135,916,803
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ENSRNOG00000070949
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:136,217,851...136,218,303
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IgG-2a
gamma-2a immunoglobulin heavy chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
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Igh-6
immunoglobulin heavy chain 6
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
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Igh-6-ps1
immunoglobulin heavy chain 6, pseudogene 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 6:136,154,202...136,187,939
Ensembl chr 6:136,187,348...136,187,728
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Ighg1
immunoglobulin heavy constant gamma 1
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:2683928|PMID:6952213)
RGD
PMID:6952213 PMID:21873635
MGI:2683928 , RGD:13792537
Ensembl chr 6:132,389,370...132,393,397
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Ighm
immunoglobulin heavy constant epsilon
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 6:132,329,269...133,053,426
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Igkc
immunoglobulin kappa constant
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
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Iglc1
immunoglobulin lambda constant 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr11:81,947,966...81,949,822
Ensembl chr11:81,947,934...81,949,822
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Igll1
immunoglobulin lambda-like polypeptide 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr11:84,138,847...84,142,238
Ensembl chr11:84,138,910...84,142,216
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LOC100360761
rCG64219-like
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 6:134,328,070...134,328,632
Ensembl chr 6:134,328,064...134,358,517
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LOC100361324
hypothetical LOC100361324
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 6:134,584,503...134,585,017
Ensembl chr 6:134,584,503...134,585,002
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LOC362795
immunoglobulin G heavy chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
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Masp2
MBL associated serine protease 2
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 5:159,035,892...159,049,561
Ensembl chr 5:159,035,911...159,049,580
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Mbl1
mannose binding lectin 1
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr16:17,029,146...17,035,187
Ensembl chr16:17,029,118...17,035,174
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Mbl2
mannose binding lectin 2
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 1:228,016,439...228,024,736
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RGD1308742
similar to Complement C5 precursor
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 3:18,401,716...18,420,064
Ensembl chr 3:18,404,899...18,420,054
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RGD1564318
similar to immunoglobulin light chain variable region
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
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Serping1
serpin family G member 1
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 3:69,842,726...69,852,583
Ensembl chr 3:69,842,739...69,852,034
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Bcl3
BCL3, transcription coactivator
acts_upstream_of_or_within
ISO
MGI:1861796 (MGI:85481|PMID:9009202)
RGD
PMID:9009202
MGI:85481
NCBI chr 1:79,471,368...79,485,908
Ensembl chr 1:79,471,369...79,485,607
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Cd81
Cd81 molecule
involved_in
ISO ISS
(PMID:20237408) GO_REF:0000024
RGD UniProt
PMID:20237408
GO_REF:0000024
NCBI chr 1:198,235,861...198,251,660
Ensembl chr 1:198,241,484...198,251,660
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Exo1
exonuclease 1
acts_upstream_of_or_within
ISO
MGI:2653925 (MGI:3028407|PMID:14716311)
RGD
PMID:14716311
MGI:3028407
NCBI chr13:87,809,725...87,834,654
Ensembl chr13:87,809,810...87,834,654
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Ighg1
immunoglobulin heavy constant gamma 1
acts_upstream_of_or_within
ISO
(MGI:1926579|PMID:11057672), (MGI:3037416|PMID:14988498), (MGI:3528786|PMID:15692051), (MGI:3620376|PMID:16492738), (MGI:3690573|PMID:9834074), (MGI:67606|PMID:8041705), (MGI:77753|PMID:8566034)
RGD
PMID:8041705 PMID:8566034 PMID:9834074 PMID:11057672 PMID:14988498 PMID:15692051 PMID:16492738 More...
MGI:1926579 MGI:3037416 MGI:3528786 MGI:3620376 MGI:3690573 MGI:67606 MGI:77753
Ensembl chr 6:132,389,370...132,393,397
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Zp2
zona pellucida glycoprotein 2
involved_in
ISO
(PMID:12052239)
RGD
PMID:12052239
NCBI chr 1:174,513,507...174,525,288
Ensembl chr 1:174,513,511...174,525,288
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Zp3
zona pellucida glycoprotein 3
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:4943828|PMID:20382503) (PMID:12052239) GO_REF:0000024
Ensembl RGD UniProt
PMID:12052239 PMID:20382503
GO_REF:0000024 GO_REF:0000107 MGI:4943828
NCBI chr12:20,690,547...20,697,513
Ensembl chr12:20,690,547...20,697,513
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Trex1
three prime repair exonuclease 1
acts_upstream_of_or_within
ISO
MGI:5751220 (MGI:5637600|PMID:25848017)
RGD
PMID:25848017
MGI:5637600
NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
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Bcl10
BCL10, immune signaling adaptor
acts_upstream_of_or_within
ISO
MGI:2158304 (MGI:1930354|PMID:11163238)
RGD
PMID:11163238
MGI:1930354
NCBI chr 2:234,840,880...234,850,520
Ensembl chr 2:234,840,858...234,850,523
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C4b
complement C4B (Chido blood group)
acts_upstream_of_or_within
ISO
MGI:1889070 (MGI:2429478|PMID:12421924)
RGD
PMID:12421924
MGI:2429478
NCBI chr20:4,197,371...4,211,684
Ensembl chr20:4,197,366...4,211,681
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Card9
caspase recruitment domain family, member 9
involved_in
ISS ISO
GO_REF:0000024 (MGI:6508474|PMID:33548172) (PMID:33548172)
UniProt RGD
PMID:33548172
GO_REF:0000024 MGI:6508474
NCBI chr 3:9,171,814...9,180,310
Ensembl chr 3:9,171,815...9,180,237
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Cd19
CD19 molecule
involved_in
ISO
(PMID:16672701)
RGD
PMID:16672701
NCBI chr 1:180,987,286...180,993,920
Ensembl chr 1:180,987,286...180,993,975
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Cd74
CD74 molecule
acts_upstream_of_or_within
ISO
MGI:1927205 (MGI:52620|PMID:7679955)
RGD
PMID:7679955
MGI:52620
NCBI chr18:54,256,757...54,266,003
Ensembl chr18:54,256,778...54,266,003
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Cfh
complement factor H
acts_upstream_of_or_within
ISO
(MGI:4421084|PMID:19828624)
RGD
PMID:19828624
MGI:4421084
NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838
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Cr2
complement C3d receptor 2
acts_upstream_of_or_within
ISO
(MGI:4421084|PMID:19828624)
RGD
PMID:19828624
MGI:4421084
NCBI chr13:106,678,579...106,716,595
Ensembl chr13:106,685,413...106,716,235
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Csf2rb
colony stimulating factor 2 receptor subunit beta
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 7:109,876,919...109,901,589
Ensembl chr 7:109,886,425...109,904,157
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Fcer1g
Fc epsilon receptor Ig
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:1857165 (MGI:1340171|PMID:10395649), (MGI:2687086|PMID:14643301)
RGD
PMID:10395649 PMID:14643301 PMID:21873635
MGI:1340171 MGI:2687086 , RGD:13792537
NCBI chr13:83,649,447...83,654,215
Ensembl chr13:83,649,449...83,671,443
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Fcgr2b
Fc gamma receptor 2B
acts_upstream_of_or_within
ISO
MGI:1857166 (MGI:1340171|PMID:10395649), (MGI:2687086|PMID:14643301)
RGD
PMID:10395649 PMID:14643301
MGI:1340171 MGI:2687086
NCBI chr13:83,191,253...83,207,776
Ensembl chr13:83,193,163...83,207,778
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Ighg1
immunoglobulin heavy constant gamma 1
acts_upstream_of_or_within
ISO
(MGI:1340171|PMID:10395649), (MGI:1354084|PMID:10704460), (MGI:1889050|PMID:8418208), (MGI:2153656|PMID:11714799), (MGI:2670820|PMID:12882831), (MGI:2679189|PMID:11911823), (MGI:2684211|PMID:4098598), (MGI:67723|PMID:8047141), (MGI:78617|PMID:8552190)
RGD
PMID:4098598 PMID:8047141 PMID:8418208 PMID:8552190 PMID:10395649 PMID:10704460 PMID:11714799 PMID:11911823 PMID:12882831 More...
MGI:1340171 MGI:1354084 MGI:1889050 MGI:2153656 MGI:2670820 MGI:2679189 MGI:2684211 MGI:67723 MGI:78617
Ensembl chr 6:132,389,370...132,393,397
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Il13ra2
interleukin 13 receptor subunit alpha 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2653910 (MGI:3589858|PMID:15944273)
Ensembl RGD
PMID:15944273
GO_REF:0000107 MGI:3589858
NCBI chr X:111,002,590...111,074,053
Ensembl chr X:111,002,592...111,072,381
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Il21r
interleukin 21 receptor
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:180,168,028...180,195,690
Ensembl chr 1:180,168,097...180,195,522
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Il4r
interleukin 4 receptor
acts_upstream_of_or_within involved_in
ISO IBA
MGI:1861951 (MGI:3589858|PMID:15944273) PMID:21873635
RGD
PMID:15944273 PMID:21873635
MGI:3589858 , RGD:13792537
NCBI chr 1:180,115,061...180,139,981
Ensembl chr 1:180,115,120...180,139,980
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Il9
interleukin 9
acts_upstream_of_or_within
ISO
MGI:96564 (MGI:6506914|PMID:30082831)
RGD
PMID:30082831
MGI:6506914
NCBI chr17:8,111,772...8,114,895
Ensembl chr17:8,111,772...8,114,895
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Il9r
interleukin 9 receptor
acts_upstream_of_or_within involved_in
ISO IBA
MGI:96563 (MGI:6506914|PMID:30082831) PMID:21873635
RGD
PMID:30082831 PMID:21873635
MGI:6506914 , RGD:13792537
NCBI chr10:15,431,706...15,444,144
Ensembl chr10:15,431,706...15,441,990
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Inpp5d
inositol polyphosphate-5-phosphatase D
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2386884 (MGI:1354084|PMID:10704460)
Ensembl RGD
PMID:10704460
GO_REF:0000107 MGI:1354084
NCBI chr 9:88,287,680...88,392,748
Ensembl chr 9:88,287,677...88,392,746
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Irf7
interferon regulatory factor 7
acts_upstream_of_or_within
ISO
MGI:3577089 (MGI:3575992|PMID:15800576)
RGD
PMID:15800576
MGI:3575992
NCBI chr 1:196,367,380...196,370,943
Ensembl chr 1:196,367,361...196,370,832
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LOC100909593
class II histocompatibility antigen, M alpha chain-like
acts_upstream_of_or_within
ISO
MGI:2652160 (MGI:2153656|PMID:11714799)
RGD
PMID:11714799
MGI:2153656
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Myd88
MYD88, innate immune signal transduction adaptor
acts_upstream_of_or_within
ISO
MGI:2385681 (MGI:3575992|PMID:15800576)
RGD
PMID:15800576
MGI:3575992
NCBI chr 8:119,074,439...119,078,508
Ensembl chr 8:119,074,437...119,079,415
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Nfkbiz
NFKB inhibitor zeta
involved_in
ISO
MGI:5501251 (MGI:5613038|PMID:25124037)
RGD
PMID:25124037
MGI:5613038
NCBI chr11:44,782,676...44,810,723
Ensembl chr11:44,782,676...44,810,723
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Prkcd
protein kinase C, delta
acts_upstream_of_or_within
ISO
MGI:2179710 (MGI:2178701|PMID:11976687)
RGD
PMID:11976687
MGI:2178701
NCBI chr16:5,769,226...5,807,214
Ensembl chr16:5,769,215...5,799,352
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RT1-Da
RT1 class II, locus Da
acts_upstream_of_or_within
ISO
MGI:95921 (MGI:2153656|PMID:11714799)
RGD
PMID:11714799
MGI:2153656
NCBI chr20:4,513,464...4,518,457
Ensembl chr20:4,512,911...4,518,455
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RT1-DMa
RT1 class II, locus DMa
acts_upstream_of_or_within
ISO
MGI:2652160 (MGI:2153656|PMID:11714799)
RGD
PMID:11714799
MGI:2153656
NCBI chr20:4,707,028...4,710,432
Ensembl chr20:4,707,028...4,710,432
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Tcirg1
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3
acts_upstream_of_or_within
ISO
(MGI:3623073|PMID:16542376)
RGD
PMID:16542376
MGI:3623073
NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742
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Tlr4
toll-like receptor 4
IEP
RGD
PMID:19257980
RGD:2312508
NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
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Tnfsf13
TNF superfamily member 13
acts_upstream_of_or_within
ISO
MGI:3038886 (MGI:3037416|PMID:14988498)
RGD
PMID:14988498
MGI:3037416
NCBI chr10:54,400,054...54,403,723
Ensembl chr10:54,400,065...54,403,042
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Aicda
activation-induced cytidine deaminase
involved_in acts_upstream_of_or_within
ISO
(MGI:5004983|PMID:21518874) (MGI:3761960|PMID:17713479)
RGD
PMID:17713479 PMID:21518874
MGI:3761960 MGI:5004983
NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972
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Atad5
ATPase family, AAA domain containing 5
acts_upstream_of
ISO
MGI:4127920 (MGI:5763555|PMID:25404367)
RGD
PMID:25404367
MGI:5763555
NCBI chr10:65,070,682...65,118,489
Ensembl chr10:65,070,689...65,117,845
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Batf
basic leucine zipper ATF-like transcription factor
involved_in
ISS ISO
GO_REF:0000024 (MGI:4456325|PMID:20421391), (MGI:5004732|PMID:21572431)
UniProt RGD
PMID:20421391 PMID:21572431
GO_REF:0000024 MGI:4456325 MGI:5004732
NCBI chr 6:105,353,715...105,376,051
Ensembl chr 6:105,353,715...105,376,051
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Cd40lg
CD40 ligand
involved_in
IEA ISO
GO_REF:0000107 (MGI:3687427|PMID:7529792)
Ensembl RGD
PMID:7529792
GO_REF:0000107 MGI:3687427
NCBI chr X:135,127,119...135,138,302
Ensembl chr X:135,126,969...135,138,306
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Ercc1
ERCC excision repair 1, endonuclease non-catalytic subunit
acts_upstream_of_or_within
ISO
MGI:2183944 (MGI:3052883|PMID:15280420)
RGD
PMID:15280420
MGI:3052883
NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
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Exo1
exonuclease 1
acts_upstream_of_or_within
ISO
MGI:2653925 (MGI:3028407|PMID:14716311)
RGD
PMID:14716311
MGI:3028407
NCBI chr13:87,809,725...87,834,654
Ensembl chr13:87,809,810...87,834,654
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Exosc3
exosome component 3
involved_in
ISO
(MGI:5009766|PMID:21255825)
RGD
PMID:21255825
MGI:5009766
NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060
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Exosc6
exosome component 6
involved_in
ISO
(MGI:5009766|PMID:21255825)
RGD
PMID:21255825
MGI:5009766
NCBI chr19:39,021,308...39,023,535
Ensembl chr19:39,022,183...39,023,515
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Lig4
DNA ligase 4
acts_upstream_of_or_within
ISO
MGI:1857732 (MGI:3761960|PMID:17713479)
RGD
PMID:17713479
MGI:3761960
NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
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Mlh1
mutL homolog 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857946 (MGI:2662086|PMID:12743174)
Ensembl RGD
PMID:12743174
GO_REF:0000107 MGI:2662086
NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
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Msh2
mutS homolog 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857940|MGI:2151801 (MGI:1342394|PMID:10430621), (MGI:2662086|PMID:12743174)
Ensembl RGD
PMID:10430621 PMID:12743174
GO_REF:0000107 MGI:1342394 MGI:2662086
NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
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Msh6
mutS homolog 6
acts_upstream_of_or_within
ISO
MGI:109352|MGI:3653701 (MGI:3641510|PMID:16618598), (MGI:3723381|PMID:17015724)
RGD
PMID:16618598 PMID:17015724
MGI:3641510 MGI:3723381
NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956
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Nbn
nibrin
involved_in
ISS ISO IEA
GO_REF:0000024 (MGI:3529405|PMID:15668383) GO_REF:0000107
UniProt RGD Ensembl
PMID:15668383
GO_REF:0000024 GO_REF:0000107 MGI:3529405
NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150
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Nfkbiz
NFKB inhibitor zeta
involved_in
ISO
MGI:5501251 (MGI:5613038|PMID:25124037) MGI:3046930|MGI:5501251 (MGI:5613038|PMID:25124037), (MGI:6357443|PMID:31182790)
RGD
PMID:25124037 PMID:31182790
MGI:5613038 MGI:6357443
NCBI chr11:44,782,676...44,810,723
Ensembl chr11:44,782,676...44,810,723
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Rnf168
ring finger protein 168
involved_in
ISS ISO
GO_REF:0000024 (MGI:4420833|PMID:20080757)
UniProt RGD
PMID:20080757
GO_REF:0000024 MGI:4420833
NCBI chr11:68,486,313...68,508,296
Ensembl chr11:68,486,321...68,508,277
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Rnf8
ring finger protein 8
involved_in
ISS ISO
GO_REF:0000024 (MGI:4420833|PMID:20080757)
UniProt RGD
PMID:20080757
GO_REF:0000024 MGI:4420833
NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491
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Sanbr
SANT and BTB domain regulator of CSR
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (MGI:6707280|PMID:33831416)
UniProt Ensembl RGD
PMID:33831416
GO_REF:0000024 GO_REF:0000107 MGI:6707280
NCBI chr14:97,516,652...97,585,955
Ensembl chr14:97,516,413...97,581,346
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Swap70
switching B-cell complex subunit SWAP70
acts_upstream_of_or_within
ISO
(MGI:1270060|PMID:9642267)
RGD
PMID:9642267
MGI:1270060
NCBI chr 1:164,267,588...164,328,796
Ensembl chr 1:164,267,609...164,328,794
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Ung
uracil-DNA glycosylase
acts_upstream_of_or_within
ISO
MGI:1343961 (MGI:3723381|PMID:17015724)
RGD
PMID:17015724
MGI:3723381
NCBI chr12:42,485,276...42,494,217
Ensembl chr12:42,485,276...42,494,206
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Xrcc4
X-ray repair cross complementing 4
acts_upstream_of_or_within
ISO
MGI:1926771|MGI:3047571|MGI:3641440 (MGI:3761960|PMID:17713479)
RGD
PMID:17713479
MGI:3761960
NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
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Ccr6
C-C motif chemokine receptor 6
involved_in
ISO
(MGI:5787846|PMID:27174992)
RGD
PMID:27174992
MGI:5787846
NCBI chr 1:52,474,477...52,508,301
Ensembl chr 1:52,474,168...52,498,603
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Bcl6
BCL6, transcription repressor
acts_upstream_of
ISO
MGI:103034|MGI:2158438 (MGI:1345885|PMID:10490661)
RGD
PMID:10490661
MGI:1345885
NCBI chr11:76,854,090...76,877,389
Ensembl chr11:76,854,090...76,877,389
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Foxp3
forkhead box P3
acts_upstream_of
ISO
MGI:3696705 (MGI:3695768|PMID:16275384)
RGD
PMID:16275384
MGI:3695768
NCBI chr X:14,908,494...14,924,994
Ensembl chr X:14,908,494...14,923,838
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Il4
interleukin 4
acts_upstream_of
ISO
(MGI:3037416|PMID:14988498)
RGD
PMID:14988498
MGI:3037416
NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750
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Stat6
signal transducer and activator of transcription 6
acts_upstream_of
ISO
MGI:107187 (MGI:1345885|PMID:10490661)
RGD
PMID:10490661
MGI:1345885
NCBI chr 7:63,480,229...63,497,551
Ensembl chr 7:63,479,642...63,498,495
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Hspd1
heat shock protein family D (Hsp60) member 1
involved_in
ISO
(PMID:16148103)
RGD
PMID:16148103
NCBI chr 9:56,579,195...56,590,011
Ensembl chr 9:56,579,201...56,589,662
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Il4
interleukin 4
acts_upstream_of
ISO
(MGI:3037416|PMID:14988498)
RGD
PMID:14988498
MGI:3037416
NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750
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C4bpa
complement component 4 binding protein, alpha
involved_in
ISO IEA IBA
(PMID:22333221) GO_REF:0000107 PMID:21873635
RGD Ensembl
PMID:22333221 PMID:21873635
GO_REF:0000107, RGD:13792537
NCBI chr13:42,075,715...42,111,205
Ensembl chr13:42,075,717...42,111,205
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C4bpb
complement component 4 binding protein, beta
involved_in
ISO
(PMID:22333221)
RGD
PMID:22333221
NCBI chr13:42,120,798...42,131,515
Ensembl chr13:42,120,798...42,131,817
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Cd46
CD46 molecule
involved_in
ISO IBA
(PMID:9029106) PMID:21873635
RGD
PMID:9029106 PMID:21873635
RGD:13792537
NCBI chr13:106,575,586...106,606,325
Ensembl chr13:106,574,858...106,660,445
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Cd55
CD55 molecule (Cromer blood group)
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr13:41,857,242...41,885,966
Ensembl chr13:41,857,395...41,885,831
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Cr1l
complement C3b/C4b receptor 1 like
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr13:106,606,952...106,660,442
Ensembl chr13:106,574,858...106,660,445
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Cr2
complement C3d receptor 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr13:106,678,579...106,716,595
Ensembl chr13:106,685,413...106,716,235
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RGD1559810
similar to hypothetical protein
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr20:33,996,404...33,997,405
Ensembl chr20:33,996,224...33,997,432
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Susd4
sushi domain containing 4
involved_in
IBA ISO
PMID:21873635 (PMID:23482636)
RGD
PMID:23482636 PMID:21873635
RGD:13792537
NCBI chr13:94,455,180...94,577,773
Ensembl chr13:94,455,165...94,577,750
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Zp3r
zona pellucida 3 receptor
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr13:42,019,998...42,064,836
Ensembl chr13:42,020,018...42,064,812
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Fcgr2b
Fc gamma receptor 2B
acts_upstream_of_or_within
ISO
MGI:1857166 (MGI:3608295|PMID:12385742)
RGD
PMID:12385742
MGI:3608295
NCBI chr13:83,191,253...83,207,776
Ensembl chr13:83,193,163...83,207,778
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Foxj1
forkhead box J1
involved_in
ISO
(MGI:3589323|PMID:16002694)
RGD
PMID:16002694
MGI:3589323
NCBI chr10:101,566,299...101,570,249
Ensembl chr10:101,566,304...101,570,237
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Ptpn6
protein tyrosine phosphatase, non-receptor type 6
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1856074 (MGI:1095647|PMID:9254656)
Ensembl RGD
PMID:9254656
GO_REF:0000107 MGI:1095647
NCBI chr 4:157,526,034...157,550,783
Ensembl chr 4:157,526,035...157,550,984
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Parp3
poly (ADP-ribose) polymerase family, member 3
involved_in
ISO
(MGI:6214451|PMID:26000965)
RGD
PMID:26000965
MGI:6214451
NCBI chr 8:107,111,010...107,117,073
Ensembl chr 8:107,111,012...107,116,782
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Da2-19
uncharacterized LOC302729
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr X:44,820,693...44,837,935
Ensembl chr X:44,820,820...44,837,934
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Thoc1
THO complex subunit 1
involved_in
ISO
(MGI:5520039|PMID:22144908)
RGD
PMID:22144908
MGI:5520039
NCBI chr18:983,606...1,020,379
Ensembl chr18:983,824...1,019,114
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Bcl6
BCL6, transcription repressor
acts_upstream_of_or_within
ISO
MGI:103034|MGI:2158438 (MGI:1345885|PMID:10490661)
RGD
PMID:10490661
MGI:1345885
NCBI chr11:76,854,090...76,877,389
Ensembl chr11:76,854,090...76,877,389
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Foxp3
forkhead box P3
acts_upstream_of_or_within
ISO
MGI:3696705 (MGI:3695768|PMID:16275384)
RGD
PMID:16275384
MGI:3695768
NCBI chr X:14,908,494...14,924,994
Ensembl chr X:14,908,494...14,923,838
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Ndfip1
Nedd4 family interacting protein 1
acts_upstream_of_or_within
ISO
MGI:3695433 (MGI:3694584|PMID:17137798)
RGD
PMID:17137798
MGI:3694584
NCBI chr18:30,265,808...30,316,068
Ensembl chr18:30,250,613...30,322,311
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Fcgr2b
Fc gamma receptor 2B
acts_upstream_of_or_within
ISO
MGI:1857166 (MGI:78617|PMID:8552190)
RGD
PMID:8552190
MGI:78617
NCBI chr13:83,191,253...83,207,776
Ensembl chr13:83,193,163...83,207,778
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RT1-M3-1
RT1 class Ib, locus M3, gene 1
involved_in
ISO
(PMID:24453251)
RGD
PMID:24453251
NCBI chr20:1,323,976...1,328,126
Ensembl chr20:1,287,521...1,328,117
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RT1-A2
RT1 class Ia, locus A2
involved_in
ISO
(PMID:30134159)
RGD
PMID:30134159
NCBI chr20:4,870,939...4,910,183
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RT1-S3
RT1 class Ib, locus S3
involved_in
ISO
(PMID:30134159)
RGD
PMID:30134159
NCBI chr20:2,670,654...2,675,411
Ensembl chr20:2,670,709...2,675,411
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Trem2
triggering receptor expressed on myeloid cells 2
involved_in
ISO
(MGI:6275756|PMID:30548312)
RGD
PMID:30548312
MGI:6275756
NCBI chr 9:12,647,605...12,654,190
Ensembl chr 9:12,647,259...12,654,170
G
Fcer2
Fc epsilon receptor II
acts_upstream_of_or_within
ISO
MGI:3583003 (MGI:67606|PMID:8041705)
RGD
PMID:8041705
MGI:67606
NCBI chr12:1,742,809...1,754,476
Ensembl chr12:1,742,815...1,754,476
G
Gimap5
GTPase, IMAP family member 5
IMP
RGD
PMID:11934565
RGD:2303774
NCBI chr 4:77,693,417...77,701,025
Ensembl chr 4:77,687,564...77,703,086
G
Hpx
hemopexin
acts_upstream_of_or_within
ISO
MGI:2447193 (MGI:3807609|PMID:18641331)
RGD
PMID:18641331
MGI:3807609
NCBI chr 1:159,932,819...159,940,327
Ensembl chr 1:159,932,755...159,940,328
G
Lta
lymphotoxin alpha
acts_upstream_of_or_within
ISO
MGI:104798 (MGI:3690573|PMID:9834074)
RGD
PMID:9834074
MGI:3690573
NCBI chr20:3,618,853...3,621,324
Ensembl chr20:3,618,853...3,620,859
G
Nod2
nucleotide-binding oligomerization domain containing 2
acts_upstream_of_or_within
ISO
MGI:3529594 (MGI:3528786|PMID:15692051)
RGD
PMID:15692051
MGI:3528786
NCBI chr19:18,379,720...18,422,817
Ensembl chr19:18,382,439...18,417,177
G
Ptprc
protein tyrosine phosphatase, receptor type, C
acts_upstream_of_or_within
ISO
MGI:2181288 (MGI:77753|PMID:8566034)
RGD
PMID:8566034
MGI:77753
NCBI chr13:49,596,193...49,708,283
Ensembl chr13:49,596,193...49,708,692
G
Tnf
tumor necrosis factor
acts_upstream_of_or_within
ISO
MGI:104797 (MGI:3690573|PMID:9834074)
RGD
PMID:9834074
MGI:3690573
NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
G
Cd226
CD226 molecule
involved_in
ISO IBA
(PMID:16831868) PMID:21873635
RGD
PMID:16831868 PMID:21873635
RGD:13792537
NCBI chr18:82,449,924...82,545,107
Ensembl chr18:82,450,568...82,543,051
G
Nectin2
nectin cell adhesion molecule 2
involved_in
ISO IBA
(PMID:16831868) PMID:21873635
RGD
PMID:16831868 PMID:21873635
RGD:13792537
NCBI chr 1:79,372,123...79,407,379
Ensembl chr 1:79,372,119...79,407,360
G
Tnfsf4
TNF superfamily member 4
involved_in
ISO
(MGI:3763508|PMID:12496423)
RGD
PMID:12496423
MGI:3763508
NCBI chr13:73,723,329...73,746,809
Ensembl chr13:73,723,329...73,746,788
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LOC688282
hypothetical protein LOC688282
involved_in
ISO
(MGI:6103709|PMID:28978694)
RGD
PMID:28978694
MGI:6103709
NCBI chr10:103,015,371...103,027,407
Ensembl chr10:103,016,505...103,027,407
G
Xcl1
X-C motif chemokine ligand 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:5009207|PMID:9973465)
Ensembl RGD
PMID:9973465
GO_REF:0000107 MGI:5009207
NCBI chr13:77,248,865...77,252,308
Ensembl chr13:77,248,717...77,252,329
G
Tnfsf4
TNF superfamily member 4
involved_in
ISO
(MGI:3763508|PMID:12496423)
RGD
PMID:12496423
MGI:3763508
NCBI chr13:73,723,329...73,746,809
Ensembl chr13:73,723,329...73,746,788
G
Exosc3
exosome component 3
acts_upstream_of_or_within
ISO
(MGI:5009766|PMID:21255825)
RGD
PMID:21255825
MGI:5009766
NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060
G
Exosc6
exosome component 6
acts_upstream_of_or_within
ISO
(MGI:5009766|PMID:21255825)
RGD
PMID:21255825
MGI:5009766
NCBI chr19:39,021,308...39,023,535
Ensembl chr19:39,022,183...39,023,515
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Hmces
5-hydroxymethylcytosine binding, ES cell specific
involved_in
ISS ISO
GO_REF:0000024 (MGI:6393148|PMID:31806351)
UniProt RGD
PMID:31806351
GO_REF:0000024 MGI:6393148
NCBI chr 4:120,392,812...120,415,616
Ensembl chr 4:120,366,542...120,415,616
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Kmt5b
lysine methyltransferase 5B
involved_in
ISS ISO
GO_REF:0000024 (MGI:6370097|PMID:28114273)
UniProt RGD
PMID:28114273
GO_REF:0000024 MGI:6370097
NCBI chr 1:201,000,444...201,049,819
Ensembl chr 1:201,000,444...201,049,819
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Kmt5c
lysine methyltransferase 5C
involved_in
ISO ISS
(MGI:6370097|PMID:28114273) GO_REF:0000024
RGD UniProt
PMID:28114273
GO_REF:0000024 MGI:6370097
NCBI chr 1:69,099,531...69,107,145
Ensembl chr 1:69,099,539...69,107,145
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Mad2l2
mitotic arrest deficient 2 like 2
involved_in
ISO
(PMID:29656893)
RGD
PMID:29656893
NCBI chr 5:158,563,545...158,576,698
Ensembl chr 5:158,563,567...158,576,693
G
Paxip1
PAX interacting protein 1
involved_in
ISO
(MGI:4821506|PMID:20671152)
RGD
PMID:20671152
MGI:4821506
NCBI chr 4:7,524,887...7,576,663
Ensembl chr 4:7,525,004...7,576,548
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Rif1
replication timing regulatory factor 1
involved_in
ISO
(MGI:5468036|PMID:23306439), (MGI:5476381|PMID:23333305), (MGI:5490831|PMID:23333306)
RGD
PMID:23306439 PMID:23333305 PMID:23333306
MGI:5468036 MGI:5476381 MGI:5490831
NCBI chr 3:36,554,689...36,607,961
Ensembl chr 3:36,554,697...36,603,617
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Shld1
shieldin complex subunit 1
involved_in
ISO IBA
(PMID:29656893) PMID:21873635
RGD
PMID:29656893 PMID:21873635
RGD:13792537
NCBI chr 3:119,938,695...120,011,068
Ensembl chr 3:119,938,833...120,009,550
G
Shld2
shieldin complex subunit 2
involved_in
ISO
(PMID:29656893)
RGD
PMID:29656893
NCBI chr16:9,544,940...9,640,323
Ensembl chr16:9,548,660...9,639,965
G
Shld3
shieldin complex subunit 3
involved_in
ISO
(PMID:29656893)
RGD
PMID:29656893
NCBI chr 2:35,294,956...35,301,865
Ensembl chr 2:35,295,859...35,302,346
G
Tfrc
transferrin receptor
involved_in
ISS ISO
GO_REF:0000024 (PMID:26642240)
UniProt RGD
PMID:26642240
GO_REF:0000024
NCBI chr11:68,163,413...68,185,257
Ensembl chr11:68,163,413...68,185,257
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Tp53bp1
tumor protein p53 binding protein 1
involved_in
ISO
(PMID:23345425), (PMID:23760478) (MGI:3041657|PMID:15077110), (MGI:3046005|PMID:15159415)
RGD
PMID:15077110 PMID:15159415 PMID:23345425 PMID:23760478
MGI:3041657 MGI:3046005
NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822
G
Mlh1
mutL homolog 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:1342394|PMID:10430621)
Ensembl RGD
PMID:10430621
GO_REF:0000107 MGI:1342394
NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
G
Msh2
mutS homolog 2
involved_in
IEA ISO
GO_REF:0000107 (MGI:1342394|PMID:10430621)
Ensembl RGD
PMID:10430621
GO_REF:0000107 MGI:1342394
NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
G
Nsd2
nuclear receptor binding SET domain protein 2
acts_upstream_of_or_within
ISO
(MGI:5462481|PMID:23241889)
RGD
PMID:23241889
MGI:5462481
NCBI chr14:76,833,194...76,911,304
Ensembl chr14:76,835,637...76,913,641
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Pms2
PMS1 homolog 2, mismatch repair system component
involved_in
ISO
UniProtKB:Q9JK91 (MGI:1342394|PMID:10430621)
RGD
PMID:10430621
MGI:1342394
NCBI chr12:10,676,819...10,701,161
Ensembl chr12:10,676,764...10,701,066
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Tgfb1
transforming growth factor, beta 1
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 (PMID:14988498)
AgBase RGD
PMID:14988498
GO_REF:0000024
NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
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Tnfsf13
TNF superfamily member 13
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (PMID:14988498) MGI:3038886 (MGI:3037416|PMID:14988498)
RGD
PMID:14988498 PMID:21873635
MGI:3037416 , RGD:13792537
NCBI chr10:54,400,054...54,403,723
Ensembl chr10:54,400,065...54,403,042
G
Clcf1
cardiotrophin-like cytokine factor 1
involved_in
ISO
(MGI:3777853|PMID:12023368)
RGD
PMID:12023368
MGI:3777853
NCBI chr 1:201,507,763...201,517,607
Ensembl chr 1:201,507,859...201,517,605
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Il4
interleukin 4
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:3037416|PMID:14988498)
RGD
PMID:14988498 PMID:21873635
MGI:3037416 , RGD:13792537
NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750
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Stat6
signal transducer and activator of transcription 6
acts_upstream_of_or_within
ISO
MGI:107187 (MGI:1345885|PMID:10490661)
RGD
PMID:10490661
MGI:1345885
NCBI chr 7:63,480,229...63,497,551
Ensembl chr 7:63,479,642...63,498,495
G
Atad5
ATPase family, AAA domain containing 5
acts_upstream_of_or_within
ISO
MGI:4127920 (MGI:5763555|PMID:25404367)
RGD
PMID:25404367
MGI:5763555
NCBI chr10:65,070,682...65,118,489
Ensembl chr10:65,070,689...65,117,845
G
Cd28
Cd28 molecule
acts_upstream_of_or_within
ISO
MGI:1857150 (MGI:62368|PMID:7688139)
RGD
PMID:7688139
MGI:62368
NCBI chr 9:62,166,324...62,194,674
Ensembl chr 9:62,166,192...62,194,685
G
Cd40
CD40 molecule
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:2670820|PMID:12882831)
RGD
PMID:12882831 PMID:21873635
MGI:2670820 , RGD:13792537
NCBI chr 3:153,790,372...153,805,279
Ensembl chr 3:153,790,449...153,805,534
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Ifng
interferon gamma
acts_upstream_of_or_within
ISO
(MGI:2670820|PMID:12882831)
RGD
PMID:12882831
MGI:2670820
NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375
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Il2
interleukin 2
acts_upstream_of_or_within
ISO
MGI:1857191 (MGI:87443|PMID:1830926)
RGD
PMID:1830926
MGI:87443
NCBI chr 2:120,004,862...120,009,566
Ensembl chr 2:120,004,862...120,009,566
G
Il4
interleukin 4
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:2670820|PMID:12882831), (MGI:3037416|PMID:14988498)
RGD
PMID:12882831 PMID:14988498 PMID:21873635
MGI:2670820 MGI:3037416 , RGD:13792537
NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750
G
Mlh1
mutL homolog 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:1342394|PMID:10430621)
Ensembl RGD
PMID:10430621
GO_REF:0000107 MGI:1342394
NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
G
Msh2
mutS homolog 2
involved_in
IEA ISO
GO_REF:0000107 (MGI:1342394|PMID:10430621)
Ensembl RGD
PMID:10430621
GO_REF:0000107 MGI:1342394
NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
G
Pagr1
Paxip1-associated glutamate-rich protein 1
involved_in
ISO
(MGI:5752090|PMID:26744420)
RGD
PMID:26744420
MGI:5752090
NCBI chr 1:181,622,708...181,624,996
G
Paxip1
PAX interacting protein 1
involved_in
ISO
(MGI:5752090|PMID:26744420)
RGD
PMID:26744420
MGI:5752090
NCBI chr 4:7,524,887...7,576,663
Ensembl chr 4:7,525,004...7,576,548
G
Pms2
PMS1 homolog 2, mismatch repair system component
involved_in
ISO
UniProtKB:Q9JK91 (MGI:1342394|PMID:10430621)
RGD
PMID:10430621
MGI:1342394
NCBI chr12:10,676,819...10,701,161
Ensembl chr12:10,676,764...10,701,066
G
Ptprc
protein tyrosine phosphatase, receptor type, C
acts_upstream_of_or_within
ISO
MGI:2181288 (MGI:85031|PMID:9015183)
RGD
PMID:9015183
MGI:85031
NCBI chr13:49,596,193...49,708,283
Ensembl chr13:49,596,193...49,708,692
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Tbx21
T-box transcription factor 21
acts_upstream_of_or_within
ISO
MGI:2180194 (MGI:2670820|PMID:12882831)
RGD
PMID:12882831
MGI:2670820
NCBI chr10:82,082,322...82,098,831
Ensembl chr10:82,082,322...82,098,831
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Btk
Bruton tyrosine kinase
IMP
RGD
PMID:22228807
RGD:11040701
NCBI chr X:97,722,796...97,762,315
Ensembl chr X:97,722,802...97,761,853
G
Fcer1a
Fc epsilon receptor Ia
acts_upstream_of_or_within
ISO
MGI:2383982 (MGI:86632|PMID:8252632)
RGD
PMID:8252632
MGI:86632
NCBI chr13:85,686,099...85,692,394
Ensembl chr13:85,686,092...85,692,351
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Fcer1g
Fc epsilon receptor Ig
acts_upstream_of_or_within
ISO
MGI:2384004 (MGI:3029067|PMID:14764707)
RGD
PMID:14764707
MGI:3029067
NCBI chr13:83,649,447...83,654,215
Ensembl chr13:83,649,449...83,671,443
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Fcgr2a
Fc gamma receptor 2A
acts_upstream_of_or_within
ISO
MGI:1861924 (MGI:2683749|PMID:9743367), (MGI:78617|PMID:8552190), (MGI:82508|PMID:8769481)
RGD
PMID:8552190 PMID:8769481 PMID:9743367
MGI:2683749 MGI:78617 MGI:82508
NCBI chr13:83,280,782...83,297,535
Ensembl chr13:83,280,784...83,295,967
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Ighg1
immunoglobulin heavy constant gamma 1
acts_upstream_of_or_within
ISO
(MGI:2683749|PMID:9743367), (MGI:2683928|PMID:6952213), (MGI:78617|PMID:8552190)
RGD
PMID:6952213 PMID:8552190 PMID:9743367
MGI:2683749 MGI:2683928 MGI:78617
Ensembl chr 6:132,389,370...132,393,397
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C3
complement C3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1861799 (MGI:2177393|PMID:11901193)
Ensembl RGD
PMID:11901193
GO_REF:0000107 MGI:2177393
NCBI chr 9:2,087,437...2,114,366
Ensembl chr 9:2,087,437...2,114,429
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Fcer1g
Fc epsilon receptor Ig
acts_upstream_of_or_within
ISO
MGI:1857165|MGI:2384004 (MGI:2177393|PMID:11901193), (MGI:2383973|PMID:8976192), (MGI:2664488|PMID:11911824)
RGD
PMID:8976192 PMID:11901193 PMID:11911824
MGI:2177393 MGI:2383973 MGI:2664488
NCBI chr13:83,649,447...83,654,215
Ensembl chr13:83,649,449...83,671,443
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Fcgr1a
Fc gamma receptor 1A
acts_upstream_of_or_within
ISO
MGI:2664927 (MGI:2664488|PMID:11911824)
RGD
PMID:11911824
MGI:2664488
NCBI chr 2:183,851,075...183,860,077
Ensembl chr 2:183,851,077...183,859,994
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Fcgr2a
Fc gamma receptor 2A
acts_upstream_of_or_within
ISO
MGI:1861924 (MGI:2664488|PMID:11911824), (MGI:2683747|PMID:9834201)
RGD
PMID:9834201 PMID:11911824
MGI:2664488 MGI:2683747
NCBI chr13:83,280,782...83,297,535
Ensembl chr13:83,280,784...83,295,967
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Ighg1
immunoglobulin heavy constant gamma 1
acts_upstream_of_or_within
ISO
(MGI:2177393|PMID:11901193), (MGI:2683747|PMID:9834201)
RGD
PMID:9834201 PMID:11901193
MGI:2177393 MGI:2683747
Ensembl chr 6:132,389,370...132,393,397
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Btk
Bruton tyrosine kinase
IMP
RGD
PMID:22228807
RGD:11040701
NCBI chr X:97,722,796...97,762,315
Ensembl chr X:97,722,802...97,761,853
G
Fcer1g
Fc epsilon receptor Ig
acts_upstream_of_or_within
ISO
MGI:1857165 (MGI:2383973|PMID:8976192)
RGD
PMID:8976192
MGI:2383973
NCBI chr13:83,649,447...83,654,215
Ensembl chr13:83,649,449...83,671,443
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Fcgr1a
Fc gamma receptor 1A
acts_upstream_of_or_within
ISO
MGI:2679238 (MGI:2679189|PMID:11911823)
RGD
PMID:11911823
MGI:2679189
NCBI chr 2:183,851,075...183,860,077
Ensembl chr 2:183,851,077...183,859,994
G
Fcgr2a
Fc gamma receptor 2A
acts_upstream_of_or_within
ISO
MGI:1861924 (MGI:82508|PMID:8769481)
RGD
PMID:8769481
MGI:82508
NCBI chr13:83,280,782...83,297,535
Ensembl chr13:83,280,784...83,295,967
G
Fcgr2a
Fc gamma receptor 2A
IMP
RGD
PMID:16482158
RGD:2293335
NCBI chr13:83,280,782...83,297,535
Ensembl chr13:83,280,784...83,295,967
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Cd55
CD55 molecule (Cromer blood group)
acts_upstream_of_or_within
ISO
MGI:2387405 (MGI:1330710|PMID:9892684)
RGD
PMID:9892684
MGI:1330710
NCBI chr13:41,857,242...41,885,966
Ensembl chr13:41,857,395...41,885,831
G
Ptprc
protein tyrosine phosphatase, receptor type, C
acts_upstream_of_or_within
ISO
MGI:2181288 (MGI:85031|PMID:9015183)
RGD
PMID:9015183
MGI:85031
NCBI chr13:49,596,193...49,708,283
Ensembl chr13:49,596,193...49,708,692
G
Aplf
aprataxin and PNKP like factor
acts_upstream_of_or_within
ISO
MGI:4128102 (MGI:4887518|PMID:21211721)
RGD
PMID:21211721
MGI:4887518
NCBI chr 4:120,070,471...120,122,656
Ensembl chr 4:120,070,471...120,122,633
G
Mir181b1
microRNA 181b-1
acts_upstream_of_or_within
ISO
(MGI:3817382|PMID:18762567)
RGD
PMID:18762567
MGI:3817382
NCBI chr13:49,485,688...49,485,797
Ensembl chr13:49,485,688...49,485,797
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Mir181b2
microRNA 181b-2
acts_upstream_of_or_within
ISO
(MGI:3817382|PMID:18762567)
RGD
PMID:18762567
MGI:3817382
NCBI chr 3:22,616,948...22,617,035
Ensembl chr 3:22,616,948...22,617,035
G
Supt6h
SPT6 homolog, histone chaperone and transcription elongation factor
involved_in
ISO
(MGI:5004983|PMID:21518874)
RGD
PMID:21518874
MGI:5004983
NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780
G
Foxp3
forkhead box P3
acts_upstream_of_or_within
ISO
MGI:3696705 (MGI:3695768|PMID:16275384)
RGD
PMID:16275384
MGI:3695768
NCBI chr X:14,908,494...14,924,994
Ensembl chr X:14,908,494...14,923,838
G
Il27ra
interleukin 27 receptor subunit alpha
acts_upstream_of_or_within
ISO
MGI:3525439 (MGI:1926579|PMID:11057672)
RGD
PMID:11057672
MGI:1926579
NCBI chr19:24,109,698...24,121,977
Ensembl chr19:24,109,972...24,121,938
G
Ndfip1
Nedd4 family interacting protein 1
acts_upstream_of_or_within
ISO
MGI:3695433 (MGI:3694584|PMID:17137798)
RGD
PMID:17137798
MGI:3694584
NCBI chr18:30,265,808...30,316,068
Ensembl chr18:30,250,613...30,322,311
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Slc15a4
solute carrier family 15 member 4
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:5649169|PMID:25310967) GO_REF:0000024
Ensembl RGD UniProt
PMID:25310967
GO_REF:0000024 GO_REF:0000107 MGI:5649169
NCBI chr12:29,048,634...29,082,480
Ensembl chr12:29,063,015...29,082,480
G
Mlh1
mutL homolog 1
acts_upstream_of_or_within
ISO
MGI:101816 (MGI:2662086|PMID:12743174)
RGD
PMID:12743174
MGI:2662086
NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
G
Msh2
mutS homolog 2
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:101938 (MGI:2662086|PMID:12743174)
RGD
PMID:12743174 PMID:21873635
MGI:2662086 , RGD:13792537
NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all