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ONTOLOGY REPORT - ANNOTATIONS


Term:ribose phosphate metabolic process
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Accession:GO:0019693 term browser browse the term
Definition:The chemical reactions and pathways involving ribose phosphate, any phosphorylated ribose sugar.
Synonyms:exact_synonym: ribose phosphate metabolism


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ribose phosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppat phosphoribosyl pyrophosphate amidotransferase ISO RGD PMID:447621 RGD:5135053 NCBI chrNW_004955447:14,552,846...14,607,416 JBrowse link
G Prps1 phosphoribosyl pyrophosphate synthetase 1 ISO RGD PMID:1651917, PMID:9348095 RGD:2291920, RGD:2291928 NCBI chrNW_004955490:8,303,775...8,330,713 JBrowse link
G Prps2 phosphoribosyl pyrophosphate synthetase 2 ISO RGD PMID:1651917, PMID:9348095 RGD:2291920, RGD:2291928 NCBI chrNW_004955544:480,587...512,019 JBrowse link
G Rpia ribose 5-phosphate isomerase A ISO RGD PMID:3079759 RGD:1641816 NCBI chrNW_004955424:107,297...135,577 JBrowse link
'de novo' IMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase ISO RGD PMID:9332377 RGD:70804 NCBI chrNW_004955457:704,213...729,702 JBrowse link
3'-phosphoadenosine 5'-phosphosulfate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Papss1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 ISO (MGI:MGI:2448448|PMID:12414806)
(PMID:14747722), (PMID:23207770)
MGI
CAFA
PMID:12414806, PMID:14747722, PMID:23207770 MGI:MGI:2448448 NCBI chrNW_004955496:1,993,423...2,057,384 JBrowse link
3'-phosphoadenosine 5'-phosphosulfate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO (PMID:7830796) BHF-UCL PMID:7830796 NCBI chrNW_004955436:12,416,147...12,477,214 JBrowse link
G Sult2b1 sulfotransferase family 2B member 1 ISO (PMID:12923182) CAFA PMID:12923182 NCBI chrNW_004955559:1,942,878...1,968,895 JBrowse link
5-phosphoribose 1-diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prps1 phosphoribosyl pyrophosphate synthetase 1 ISO RGD PMID:9366267 RGD:5134981 NCBI chrNW_004955490:8,303,775...8,330,713 JBrowse link
G Prps2 phosphoribosyl pyrophosphate synthetase 2 ISO RGD PMID:9366267 RGD:5134981 NCBI chrNW_004955544:480,587...512,019 JBrowse link
G Pygl glycogen phosphorylase L ISO RGD PMID:15571236 RGD:1599376 NCBI chrNW_004955409:11,970,112...12,007,102 JBrowse link
acetyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:17371050) BHF-UCL PMID:17371050 NCBI chrNW_004955412:10,350,088...10,369,806 JBrowse link
G Acly ATP citrate lyase ISO (PMID:1371749) BHF-UCL PMID:1371749 NCBI chrNW_004955451:16,058,916...16,091,831 JBrowse link
G Acss1 acyl-CoA synthetase short chain family member 1 ISO (MGI:MGI:2151932|PMID:11150295)
(PMID:16788062)
MGI
UniProtKB
PMID:11150295, PMID:16788062 MGI:MGI:2151932 NCBI chrNW_004955415:31,117,542...31,154,654 JBrowse link
G Acss2 acyl-CoA synthetase short chain family member 2 ISO (MGI:MGI:2151932|PMID:11150295) MGI PMID:11150295 MGI:MGI:2151932 NCBI chrNW_004955422:26,450,899...26,500,336 JBrowse link
G Ppcs phosphopantothenoylcysteine synthetase ISO (PMID:29754768) UniProt PMID:29754768 NCBI chrNW_004955537:2,080,865...2,084,199 JBrowse link
acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlat dihydrolipoamide S-acetyltransferase ISO RGD PMID:7487891 RGD:1599112 NCBI chrNW_004955412:13,718,091...13,746,220 JBrowse link
G Dld dihydrolipoamide dehydrogenase ISO RGD PMID:7487891 RGD:1599112 NCBI chrNW_004955410:12,212,981...12,238,561 JBrowse link
G Pdha1 pyruvate dehydrogenase E1 alpha 1 subunit ISO (PMID:19081061) RGD
UniProtKB
PMID:7487891, PMID:19081061 RGD:1599112 NCBI chrNW_004955586:98,492...114,927 JBrowse link
G Pdha2 pyruvate dehydrogenase E1 alpha 2 subunit ISO RGD PMID:7487891 RGD:1599112 NCBI chrNW_004955405:6,383,088...6,383,946 JBrowse link
G Pdhb pyruvate dehydrogenase E1 beta subunit ISO (PMID:19081061) UniProtKB
RGD
PMID:7487891, PMID:19081061 RGD:1599112 NCBI chrNW_004955430:1,707,615...1,713,541 JBrowse link
acetyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:17371050) BHF-UCL PMID:17371050 NCBI chrNW_004955412:10,350,088...10,369,806 JBrowse link
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:2137102|PMID:11415433), (MGI:MGI:6450264|PMID:18799520) UniProt PMID:11415433, PMID:18799520 MGI:MGI:2137102, MGI:MGI:6450264 NCBI chrNW_004955522:945,186...960,094 JBrowse link
acetyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acaa2 acetyl-CoA acyltransferase 2 ISO RGD PMID:16476568 RGD:2317620 NCBI chrNW_004955402:34,857,317...34,885,169 JBrowse link
G Acaca acetyl-CoA carboxylase alpha ISO (MGI:MGI:4840155|PMID:20952656) UniProtKB PMID:20952656 MGI:MGI:4840155 NCBI chrNW_004955451:679,033...909,892 JBrowse link
G Acacb acetyl-CoA carboxylase beta ISO (PMID:20952656) UniProtKB PMID:20952656 NCBI chrNW_004955455:10,282,308...10,427,439 JBrowse link
G Acly ATP citrate lyase ISO RGD PMID:18062843 RGD:2317315 NCBI chrNW_004955451:16,058,916...16,091,831 JBrowse link
G Acot12 acyl-CoA thioesterase 12 ISO (MGI:MGI:2450440|PMID:12545200) MGI PMID:12545200 MGI:MGI:2450440 NCBI chrNW_004955418:28,829,316...28,872,629 JBrowse link
G Cs citrate synthase ISO RGD PMID:818082, PMID:938457, PMID:5820645 RGD:2306824, RGD:2306825, RGD:2306828 NCBI chrNW_004955458:3,881,798...3,913,044 JBrowse link
G Fasn fatty acid synthase ISO RGD PMID:18062843 RGD:2317315 NCBI chrNW_004955506:1,063,002...1,079,939 JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 ISO (PMID:23751782) UniProt PMID:23751782 NCBI chrNW_004955435:22,804,484...22,820,807 JBrowse link
acyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadsb acyl-CoA dehydrogenase short/branched chain ISO PMID:8660691 MGI PMID:8660691 RGD:631739 NCBI chrNW_004955477:1,177,704...1,213,347 JBrowse link
G Acot12 acyl-CoA thioesterase 12 ISO PMID:11322891 HGNC PMID:11322891 RGD:633789 NCBI chrNW_004955418:28,829,316...28,872,629 JBrowse link
G Acot8 acyl-CoA thioesterase 8 ISO (PMID:9153233), (PMID:9299485)
(MGI:MGI:2156286|PMID:11673457)
PMID:11785945
UniProtKB
MGI
UniProt
PMID:9153233, PMID:9299485, PMID:11673457, PMID:11785945 MGI:MGI:2156286, RGD:70235 NCBI chrNW_004955445:11,434,649...11,454,806 JBrowse link
G Acot9 acyl-CoA thioesterase 9 ISO (MGI:MGI:1928308|PMID:10383425) HGNC PMID:10383425 MGI:MGI:1928308 NCBI chrNW_004955509:4,143,246...4,167,129 JBrowse link
G Acsm4 acyl-CoA synthetase medium chain family member 4 ISO RGD PMID:12709059 RGD:1299602 NCBI chrNW_004955493:6,023...31,418 JBrowse link
G Baat bile acid-CoA:amino acid N-acyltransferase ISO (PMID:12810727) UniProtKB PMID:12810727 NCBI chrNW_004955419:24,469,213...24,521,728 JBrowse link
G Gcdh glutaryl-CoA dehydrogenase ISO RGD PMID:6895440 RGD:1598697 NCBI chrNW_004955415:31,952,400...31,958,067 JBrowse link
G Gpam glycerol-3-phosphate acyltransferase, mitochondrial ISO (MGI:MGI:3619815|PMID:15878874) MGI PMID:15878874 MGI:MGI:3619815 NCBI chrNW_004955431:17,291,890...17,363,611 JBrowse link
G Gpat4 glycerol-3-phosphate acyltransferase 4 ISO (PMID:18238778) UniProtKB PMID:18238778 NCBI chrNW_004955536:1,266,920...1,313,765 JBrowse link
G Hmgcl 3-hydroxy-3-methylglutaryl-CoA lyase ISO RGD PMID:2573547 RGD:1599519 NCBI chrNW_004955452:3,720,103...3,734,730 JBrowse link
G Hnf4a hepatocyte nuclear factor 4 alpha ISO RGD PMID:15870076 RGD:1625002 NCBI chrNW_004955445:12,925,248...12,962,501 JBrowse link
G Oxsm 3-oxoacyl-ACP synthase, mitochondrial ISO (PMID:15668256) HGNC PMID:15668256 NCBI chrNW_004955430:17,644,800...17,661,097 JBrowse link
ADP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak1 adenylate kinase 1 ISO RGD PMID:19049516 RGD:5134369 NCBI chrNW_004955419:799,415...807,138 JBrowse link
G Ak2 adenylate kinase 2 ISO RGD PMID:5123889 RGD:5490208 NCBI chrNW_004955452:11,254,853...11,275,587 JBrowse link
G Ak3 adenylate kinase 3 ISO RGD PMID:5010295, PMID:5123889 RGD:5490208, RGD:5490216 NCBI chrNW_004955434:8,998,357...9,010,468 JBrowse link
ADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt9 nudix hydrolase 9 ISO (MGI:MGI:2158549|PMID:11825615) MGI PMID:11825615 MGI:MGI:2158549 NCBI chrNW_004955474:2,402,400...2,438,145 JBrowse link
ADP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 ISO (MGI:MGI:5529149|PMID:23078545)
(MGI:MGI:5476853|PMID:23439682)
CACAO
MGI
PMID:23078545, PMID:23439682 MGI:MGI:5476853, MGI:MGI:5529149 NCBI chrNW_004955414:26,073,192...26,116,448 JBrowse link
G Bad BCL2 associated agonist of cell death ISO (MGI:MGI:3778846|PMID:18223655) UniProtKB PMID:18223655 MGI:MGI:3778846 NCBI chrNW_004955422:20,795,585...20,809,039 JBrowse link
AMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adsl adenylosuccinate lyase ISO (PMID:11428554) RGD
UniProtKB
PMID:3759987, PMID:11428554 RGD:5135303 NCBI chrNW_004955413:26,067,463...26,084,669 JBrowse link
G Adss1 adenylosuccinate synthase 1 ISO (PMID:15786719) UniProtKB PMID:15786719 NCBI chrNW_004955538:3,179,299...3,196,251 JBrowse link
G Adss2 adenylosuccinate synthase 2 ISO (PMID:2004783)
(MGI:MGI:64874|PMID:8308018)
UniProtKB
MGI
PMID:2004783, PMID:8308018 MGI:MGI:64874 NCBI chrNW_004955406:7,684,979...7,715,179 JBrowse link
G Prps1 phosphoribosyl pyrophosphate synthetase 1 ISO RGD PMID:2546925 RGD:5134985 NCBI chrNW_004955490:8,303,775...8,330,713 JBrowse link
G Prps2 phosphoribosyl pyrophosphate synthetase 2 ISO RGD PMID:2546925 RGD:5134985 NCBI chrNW_004955544:480,587...512,019 JBrowse link
AMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5e 5'-nucleotidase ecto ISO (MGI:MGI:3770326|PMID:16547283) RGD
MGI
PMID:16547283, PMID:21414400 MGI:MGI:3770326, RGD:5134346 NCBI chrNW_004955411:12,891,236...12,946,324 JBrowse link
AMP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak1 adenylate kinase 1 ISO RGD PMID:19049516 RGD:5134369 NCBI chrNW_004955419:799,415...807,138 JBrowse link
G Ak2 adenylate kinase 2 ISO RGD PMID:5010295 RGD:5490216 NCBI chrNW_004955452:11,254,853...11,275,587 JBrowse link
G Ak3 adenylate kinase 3 ISO (PMID:11485571) BHF-UCL PMID:11485571 NCBI chrNW_004955434:8,998,357...9,010,468 JBrowse link
G Ak4 adenylate kinase 4 ISO (PMID:19766732) BHF-UCL PMID:19766732 NCBI chrNW_004955423:25,395,086...25,402,324 JBrowse link
G Ampd2 adenosine monophosphate deaminase 2 ISO (MGI:MGI:5489878|PMID:22212473) CACAO PMID:22212473 MGI:MGI:5489878 NCBI chrNW_004955435:13,029,377...13,040,972 JBrowse link
G Ampd3 adenosine monophosphate deaminase 3 ISO (MGI:MGI:5529149|PMID:23078545)
(MGI:MGI:5476853|PMID:23439682)
CACAO
MGI
PMID:23078545, PMID:23439682 MGI:MGI:5476853, MGI:MGI:5529149 NCBI chrNW_004955414:26,073,192...26,116,448 JBrowse link
AMP phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak3 adenylate kinase 3 ISO RGD PMID:5484813 RGD:2301093 NCBI chrNW_004955434:8,998,357...9,010,468 JBrowse link
G Ak9 adenylate kinase 9 ISO (PMID:23416111) UniProtKB PMID:23416111 NCBI chrNW_004955402:704...128,521 JBrowse link
ATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5f1a ATP synthase F1 subunit alpha ISO (PMID:21106936) CAFA PMID:21106936 NCBI chrNW_004955402:31,652,226...31,662,114 JBrowse link
G Atp5f1b ATP synthase F1 subunit beta ISO (PMID:17510399), (PMID:21106936) UniProtKB PMID:17510399, PMID:21106936 NCBI chrNW_004955458:4,188,167...4,195,575 JBrowse link
G Atp5mc1 ATP synthase membrane subunit c locus 1 ISO RGD PMID:22209705 RGD:13800744 NCBI chrNW_004955451:12,426,309...12,429,460 JBrowse link
G Atp5po ATP synthase peripheral stalk subunit OSCP ISO RGD PMID:7864899 RGD:14696824 NCBI chrNW_004955407:33,288,194...33,298,817 JBrowse link
G Dguok deoxyguanosine kinase ISO RGD PMID:30404003 RGD:15039296 NCBI chrNW_004955424:11,739,904...11,773,884 JBrowse link
G LOC102020557 L-lactate dehydrogenase C chain ISO (MGI:MGI:3775056|PMID:18367675) MGI PMID:18367675 MGI:MGI:3775056 NCBI chrNW_004955414:33,109,535...33,138,756 JBrowse link
G Pklr pyruvate kinase L/R ISO RGD PMID:4273555, PMID:5492954 RGD:2302789, RGD:2302790 NCBI chrNW_004955545:1,742,432...1,749,632 JBrowse link
G Pkm pyruvate kinase M1/2 ISO RGD PMID:4273555 RGD:2302790 NCBI chrNW_004955450:4,907,962...4,935,179 JBrowse link
G Slc25a13 solute carrier family 25 member 13 ISO (PMID:12851387) UniProtKB PMID:12851387 NCBI chrNW_004955432:12,685,253...12,788,307 JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO (PMID:10513816) BHF-UCL PMID:10513816 NCBI chrNW_004955555:274,405...288,441 JBrowse link
ATP generation from ADP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak9 adenylate kinase 9 ISO (PMID:23416111) UniProtKB PMID:23416111 NCBI chrNW_004955402:704...128,521 JBrowse link
benzoyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glyat glycine-N-acyltransferase ISO (PMID:22475485) UniProtKB PMID:22475485 NCBI chrNW_004955511:3,670,736...3,683,751 JBrowse link
butyryl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:6450264|PMID:18799520) UniProt PMID:18799520 MGI:MGI:6450264 NCBI chrNW_004955522:945,186...960,094 JBrowse link
cAMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy1 adenylate cyclase 1 ISO RGD PMID:14985420 RGD:2312640 NCBI chrNW_004955456:6,833,992...6,930,990 JBrowse link
G Adcy10 adenylate cyclase 10 ISO (PMID:12609998), (PMID:15659711) RGD
UniProtKB
PMID:7225326, PMID:9874775, PMID:12609998, PMID:15659711, PMID:16627466, PMID:16964251 RGD:1299450, RGD:2313171, RGD:2313173, RGD:2313177 NCBI chrNW_004955462:9,196,984...9,278,850 JBrowse link
G Adcy2 adenylate cyclase 2 ISO PMID:10427002
PMID:18164588
UniProt
RGD
BHF-UCL
PMID:10427002, PMID:11738086, PMID:12711600, PMID:18164588 RGD:10400857, RGD:2312641, RGD:2312674, RGD:8553431 NCBI chrNW_004955504:4,990,634...5,376,990 JBrowse link
G Adcy3 adenylate cyclase 3 ISO (MGI:MGI:1889935|PMID:11055432)
PMID:24363043
UniProtKB
UniProt
RGD
PMID:11055432, PMID:12711600, PMID:24363043 MGI:MGI:1889935, RGD:10400870, RGD:2312674 NCBI chrNW_004955469:6,933,208...7,026,179 JBrowse link
G Adcy4 adenylate cyclase 4 ISO PMID:8900209 RGD
BHF-UCL
PMID:8900209, PMID:11738086, PMID:12711600 RGD:2312641, RGD:2312674, RGD:8554340 NCBI chrNW_004955409:35,966,529...35,982,839 JBrowse link
G Adcy6 adenylate cyclase 6 ISO (MGI:MGI:4457984|PMID:20466003)
(PMID:17916776), (PMID:18403039)
UniProtKB
RGD
PMID:10866989, PMID:10894801, PMID:11738086, PMID:12711600, PMID:15579502, PMID:15961389, PMID:17916776, PMID:18403039, PMID:18971210, PMID:20466003 MGI:MGI:4457984, RGD:1598749, RGD:2312641, RGD:2312654, RGD:2312674, RGD:2312678, RGD:2313211, RGD:2315006 NCBI chrNW_004955500:7,635,946...7,655,579 JBrowse link
G Adcy7 adenylate cyclase 7 ISO (PMID:11113152), (PMID:17760784) RGD
UniProtKB
PMID:11113152, PMID:12711600, PMID:17760784 RGD:2312674 NCBI chrNW_004955433:8,362,957...8,428,773 JBrowse link
G Adcy8 adenylate cyclase 8 ISO RGD PMID:16741924, PMID:19305019, PMID:19444869 RGD:2312769, RGD:2312785, RGD:7241269 NCBI chrNW_004955461:5,497,708...5,725,574 JBrowse link
G Adcy9 adenylate cyclase 9 ISO (MGI:MGI:76465|PMID:7575502), (MGI:MGI:80863|PMID:8662814)
(PMID:10987815), (PMID:9628827)
RGD
MGI
UniProtKB
PMID:7575502, PMID:8662814, PMID:9628827, PMID:10987815, PMID:19444869 MGI:MGI:76465, MGI:MGI:80863, RGD:2312785 NCBI chrNW_004955442:13,310,289...13,433,816 JBrowse link
cAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde4d phosphodiesterase 4D ISO (PMID:20819076) BHF-UCL PMID:20819076 NCBI chrNW_004955446:7,914,326...9,252,527 JBrowse link
cAMP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 ISO (MGI:MGI:76872|PMID:7595494) MGI PMID:7595494 MGI:MGI:76872 NCBI chrNW_004955440:17,364,996...17,497,446 JBrowse link
G Epha2 EPH receptor A2 ISO (PMID:27385333) UniProtKB PMID:27385333 NCBI chrNW_004955527:2,120,447...2,151,932 JBrowse link
canonical glycolysis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eno1 enolase 1 ISO (PMID:29775581)
PMID:15041191
(PMID:3529090)
UniProt
CAFA
PMID:3529090, PMID:15041191, PMID:29775581 RGD:2302788 NCBI chrNW_004955486:4,275,371...4,287,152 JBrowse link
G Eno2 enolase 2 ISO PMID:15041191 CAFA PMID:15041191 RGD:2302788 NCBI chrNW_004955413:4,498,625...4,506,769 JBrowse link
G Foxk1 forkhead box K1 ISO (PMID:30700909) UniProt PMID:30700909 NCBI chrNW_004955460:11,011,498...11,067,443 JBrowse link
G Foxk2 forkhead box K2 ISO (MGI:MGI:6281052|PMID:30700909) UniProt PMID:30700909 MGI:MGI:6281052 NCBI chrNW_004955506:567,770...614,505 JBrowse link
G Pfkm phosphofructokinase, muscle ISO (MGI:MGI:4356361|PMID:19696889) MGI PMID:19696889 MGI:MGI:4356361 NCBI chrNW_004955500:6,979,169...7,020,375 JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chrNW_004955464:11,179,432...11,213,147 JBrowse link
cGMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gucy1a1 guanylate cyclase 1 soluble subunit alpha 1 ISO (PMID:23505436)
(MGI:MGI:3640061|PMID:16614755)
UniProtKB
MGI
PMID:16614755, PMID:23505436 MGI:MGI:3640061 NCBI chrNW_004955471:11,367,318...11,422,199 JBrowse link
G Gucy1b1 guanylate cyclase 1 soluble subunit beta 1 ISO (PMID:23505436) UniProtKB PMID:23505436 NCBI chrNW_004955471:11,303,478...11,349,512 JBrowse link
G Gucy2d guanylate cyclase 2D, retinal ISO (MGI:MGI:5049799|PMID:21598940) UniProt PMID:21598940 MGI:MGI:5049799 NCBI chrNW_004955467:8,938,057...8,949,684 JBrowse link
G Nppa natriuretic peptide A ISO (PMID:1672777) UniProtKB PMID:1672777 NCBI chrNW_004955486:2,061,196...2,062,805 JBrowse link
G Nppb natriuretic peptide B ISO (PMID:1672777) UniProtKB PMID:1672777 NCBI chrNW_004955486:2,054,775...2,056,130 JBrowse link
G Nppc natriuretic peptide C ISO (PMID:1672777)
(MGI:MGI:2177134|PMID:11259675)
UniProtKB PMID:1672777, PMID:11259675 MGI:MGI:2177134 NCBI chrNW_004955453:3,884,580...3,888,494 JBrowse link
G Npr1 natriuretic peptide receptor 1 ISO (PMID:1672777) UniProtKB PMID:1672777 NCBI chrNW_004955545:323,386...338,654 JBrowse link
G Npr2 natriuretic peptide receptor 2 ISO (PMID:1672777) UniProtKB PMID:1672777 NCBI chrNW_004955472:506,351...523,647 JBrowse link
cGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde1a phosphodiesterase 1A ISO RGD PMID:16514069 RGD:2312521 NCBI chrNW_004955403:14,906,069...15,202,710 JBrowse link
G Pde2a phosphodiesterase 2A ISO (MGI:MGI:4420377|PMID:19632989)
(PMID:19828435)
UniProtKB PMID:19632989, PMID:19828435 MGI:MGI:4420377 NCBI chrNW_004955414:18,765,591...18,826,717 JBrowse link
G Pde5a phosphodiesterase 5A ISO (MGI:MGI:2450821|PMID:12554648) MGI PMID:12554648 MGI:MGI:2450821 NCBI chrNW_004955428:20,785,497...20,904,717 JBrowse link
G Pde9a phosphodiesterase 9A ISO (MGI:MGI:5634842|PMID:25799991)
(PMID:25799991)
(MGI:MGI:1266874|PMID:9624145)
UniProtKB PMID:9624145, PMID:25799991 MGI:MGI:1266874, MGI:MGI:5634842 NCBI chrNW_004955407:39,090,718...39,165,363 JBrowse link
cGMP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 ISO (MGI:MGI:66348|PMID:7518067), (MGI:MGI:68066|PMID:3038581) MGI PMID:3038581, PMID:7518067 MGI:MGI:66348, MGI:MGI:68066 NCBI chrNW_004955561:1,727,935...1,851,907 JBrowse link
G Pde5a phosphodiesterase 5A ISO (MGI:MGI:4361111|PMID:19474061), (MGI:MGI:4834094|PMID:20511540) MGI PMID:19474061, PMID:20511540 MGI:MGI:4361111, MGI:MGI:4834094 NCBI chrNW_004955428:20,785,497...20,904,717 JBrowse link
G Pde9a phosphodiesterase 9A ISO (PMID:9624146) UniProtKB PMID:9624146 NCBI chrNW_004955407:39,090,718...39,165,363 JBrowse link
G Rora RAR related orphan receptor A ISO (MGI:MGI:66348|PMID:7518067) MGI PMID:7518067 MGI:MGI:66348 NCBI chrNW_004955450:14,262,199...14,434,611 JBrowse link
coenzyme A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:17371050) BHF-UCL PMID:17371050 NCBI chrNW_004955412:10,350,088...10,369,806 JBrowse link
G Acot7 acyl-CoA thioesterase 7 ISO (PMID:10578051) BHF-UCL PMID:10578051 NCBI chrNW_004955486:6,188,102...6,258,230 JBrowse link
G Coasy Coenzyme A synthase ISO (MGI:MGI:2181228|PMID:11980892)
(PMID:11923312)
MGI
UniProtKB
PMID:11923312, PMID:11980892 MGI:MGI:2181228 NCBI chrNW_004955451:16,457,707...16,460,631 JBrowse link
G Pank1 pantothenate kinase 1 ISO (MGI:MGI:3607004|PMID:16040613)
(MGI:MGI:4461354|PMID:20559429), (MGI:MGI:5446555|PMID:22815849)
MGI PMID:16040613, PMID:20559429, PMID:22815849 MGI:MGI:3607004, MGI:MGI:4461354, MGI:MGI:5446555 NCBI chrNW_004955425:3,384,023...3,433,808 JBrowse link
G Pank2 pantothenate kinase 2 ISO (MGI:MGI:5446555|PMID:22815849) MGI PMID:22815849 MGI:MGI:5446555 NCBI chrNW_004955415:14,722,951...14,752,493 JBrowse link
G Pank3 pantothenate kinase 3 ISO (PMID:30927326)
(PMID:20797618)
(MGI:MGI:3607004|PMID:16040613)
UniProt
UniProtKB
MGI
PMID:16040613, PMID:20797618, PMID:30927326 MGI:MGI:3607004 NCBI chrNW_004955408:21,630,849...21,643,432 JBrowse link
G Ppcdc phosphopantothenoylcysteine decarboxylase ISO (PMID:11923312) UniProtKB PMID:11923312 NCBI chrNW_004955450:2,971,874...2,985,034 JBrowse link
G Ppcs phosphopantothenoylcysteine synthetase ISO (PMID:11923312)
(PMID:29754768)
UniProtKB
UniProt
PMID:11923312, PMID:29754768 NCBI chrNW_004955537:2,080,865...2,084,199 JBrowse link
coenzyme A catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:2137102|PMID:11415433), (MGI:MGI:6450264|PMID:18799520) MGI PMID:11415433, PMID:18799520 MGI:MGI:2137102, MGI:MGI:6450264 NCBI chrNW_004955522:945,186...960,094 JBrowse link
coenzyme A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:17371050) BHF-UCL PMID:17371050 NCBI chrNW_004955412:10,350,088...10,369,806 JBrowse link
G Crot carnitine O-octanoyltransferase ISO (MGI:MGI:5546000|PMID:15492013) UniProtKB PMID:15492013 MGI:MGI:5546000 NCBI chrNW_004955607:379,121...413,394 JBrowse link
G Mccc2 methylcrotonoyl-CoA carboxylase 2 ISO RGD PMID:3995077 RGD:2316862 NCBI chrNW_004955575:445,627...503,891 JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps1 CTP synthase 1 ISO (PMID:16179339)
(PMID:24870241)
UniProtKB PMID:16179339, PMID:24870241 NCBI chrNW_004955537:773,664...811,084 JBrowse link
fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcdh glutaryl-CoA dehydrogenase ISO RGD PMID:6895440 RGD:1598697 NCBI chrNW_004955415:31,952,400...31,958,067 JBrowse link
GDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 ISO RGD PMID:4307347 RGD:5147877 NCBI chrNW_004955581:299,010...305,032 JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 ISO (PMID:22556419) UniProtKB PMID:22556419 NCBI chrNW_004955403:45,598,813...45,601,940 JBrowse link
glycolysis from storage polysaccharide through glucose-1-phosphate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pfkm phosphofructokinase, muscle ISO (MGI:MGI:4356361|PMID:19696889) MGI PMID:19696889 MGI:MGI:4356361 NCBI chrNW_004955500:6,979,169...7,020,375 JBrowse link
glycolytic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldob aldolase, fructose-bisphosphate B ISO (PMID:10625657) BHF-UCL
RGD
PMID:8255543, PMID:10625657 RGD:2302804 NCBI chrNW_004955419:24,377,427...24,389,909 JBrowse link
G Eno1 enolase 1 ISO PMID:7964722 CAFA PMID:7964722 RGD:12792993 NCBI chrNW_004955486:4,275,371...4,287,152 JBrowse link
G Eno2 enolase 2 ISO RGD PMID:8255543 RGD:2302804 NCBI chrNW_004955413:4,498,625...4,506,769 JBrowse link
G Eno4 enolase 4 ISO (MGI:MGI:5516566|PMID:23446454) MGI PMID:23446454 MGI:MGI:5516566 NCBI chrNW_004955431:21,625,808...21,650,282 JBrowse link
G Gapdh glyceraldehyde-3-phosphate dehydrogenase ISO RGD PMID:8255543, PMID:28258188 RGD:13792662, RGD:2302804 NCBI chrNW_004955413:4,162,467...4,166,783 JBrowse link
G Gapdhs glyceraldehyde-3-phosphate dehydrogenase, spermatogenic ISO (MGI:MGI:3513747|PMID:15546993), (MGI:MGI:4421119|PMID:19759366) MGI PMID:15546993, PMID:19759366 MGI:MGI:3513747, MGI:MGI:4421119 NCBI chrNW_004955468:4,757,080...4,773,675 JBrowse link
G Gck glucokinase ISO RGD PMID:4273555, PMID:4353083 RGD:2302790, RGD:2302851 NCBI chrNW_004955456:7,784,269...7,838,260 JBrowse link
G Gpi glucose-6-phosphate isomerase ISO (MGI:MGI:3526465|PMID:15665293)
(MGI:MGI:83399|PMID:8417789)
MGI PMID:8417789, PMID:15665293 MGI:MGI:3526465, MGI:MGI:83399 NCBI chrNW_004955468:3,980,999...4,007,553 JBrowse link
G Hk1 hexokinase 1 ISO RGD PMID:4353083, PMID:8255543, PMID:15574336 RGD:1358232, RGD:2302804, RGD:2302851 NCBI chrNW_004955437:21,733,314...21,824,303 JBrowse link
G Pfkfb2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 ISO (PMID:11069105) UniProtKB PMID:11069105 NCBI chrNW_004955406:42,573,210...42,601,994 JBrowse link
G Pfkl phosphofructokinase, liver type ISO (PMID:22923583), (PMID:6227635), (PMID:6444532) UniProtKB
RGD
PMID:2931076, PMID:4273555, PMID:4353083, PMID:6227635, PMID:6444532, PMID:6458283, PMID:22923583 RGD:2301239, RGD:2302736, RGD:2302790, RGD:2302851 NCBI chrNW_004955407:41,131,022...41,145,392 JBrowse link
G Pfkm phosphofructokinase, muscle ISO (PMID:6444532) RGD
UniProtKB
PMID:2931076, PMID:6444532, PMID:8593533 RGD:1599363, RGD:2302736 NCBI chrNW_004955500:6,979,169...7,020,375 JBrowse link
G Pfkp phosphofructokinase, platelet ISO RGD PMID:2931076, PMID:8255543 RGD:2302736, RGD:2302804 NCBI chrNW_004955421:28,042,973...28,098,358 JBrowse link
G Pgam1 phosphoglycerate mutase 1 ISO (PMID:22590500) UniProtKB PMID:22590500 NCBI chrNW_004955507:3,562,513...3,571,400 JBrowse link
G Pgam2 phosphoglycerate mutase 2 ISO (PMID:6262916)
(MGI:MGI:3526465|PMID:15665293)
UniProtKB
MGI
PMID:6262916, PMID:15665293 MGI:MGI:3526465 NCBI chrNW_004955456:7,909,891...7,912,116 JBrowse link
G Pgk1 phosphoglycerate kinase 1 ISO (MGI:MGI:3526465|PMID:15665293)
(PMID:7391028)
MGI
RGD
CAFA
PMID:3091090, PMID:6405813, PMID:7391028, PMID:15665293 MGI:MGI:3526465, RGD:2302859, RGD:2302860 NCBI chrNW_004955557:1,566,534...1,584,799 JBrowse link
G Pgk2 phosphoglycerate kinase 2 ISO (MGI:MGI:4421119|PMID:19759366) MGI PMID:19759366 MGI:MGI:4421119 NCBI chrNW_004955411:8,216,432...8,218,065 JBrowse link
G Pklr pyruvate kinase L/R ISO RGD PMID:4273555, PMID:4353083 RGD:2302790, RGD:2302851 NCBI chrNW_004955545:1,742,432...1,749,632 JBrowse link
G Pkm pyruvate kinase M1/2 ISO PMID:1883388
(MGI:MGI:55033|PMID:7262549), (MGI:MGI:55100|PMID:7295297)
CAFA
RGD
MGI
PMID:1883388, PMID:4273555, PMID:7262549, PMID:7295297, PMID:8255543 MGI:MGI:55033, MGI:MGI:55100, RGD:12793012, RGD:2302790, RGD:2302804 NCBI chrNW_004955450:4,907,962...4,935,179 JBrowse link
G Prkag3 protein kinase AMP-activated non-catalytic subunit gamma 3 ISO (MGI:MGI:3583413|PMID:15857891) MGI PMID:15857891 MGI:MGI:3583413 NCBI chrNW_004955453:14,584,405...14,594,112 JBrowse link
glycolytic process from galactose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Galk1 galactokinase 1 ISO (MGI:MGI:1861531|PMID:10915771) MGI PMID:10915771 MGI:MGI:1861531 NCBI chrNW_004955506:6,489,799...6,493,354 JBrowse link
G Galt galactose-1-phosphate uridylyltransferase ISO (MGI:MGI:2180189|PMID:11286504) MGI PMID:11286504 MGI:MGI:2180189 NCBI chrNW_004955472:1,487,173...1,490,548 JBrowse link
glycolytic process through fructose-6-phosphate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pfkl phosphofructokinase, liver type ISO (MGI:MGI:1096000|PMID:9287040), (MGI:MGI:66552|PMID:8172601) MGI PMID:8172601, PMID:9287040 MGI:MGI:1096000, MGI:MGI:66552 NCBI chrNW_004955407:41,131,022...41,145,392 JBrowse link
G Pfkm phosphofructokinase, muscle ISO (PMID:25796446)
(MGI:MGI:3759009|PMID:17595219)
(MGI:MGI:3809691|PMID:2521854)
CAFA
MGI
PMID:2521854, PMID:17595219, PMID:25796446 MGI:MGI:3759009, MGI:MGI:3809691 NCBI chrNW_004955500:6,979,169...7,020,375 JBrowse link
GMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gmps guanine monophosphate synthase ISO (PMID:8089153) RGD
MGI
PMID:3436958, PMID:8089153 RGD:1599004 NCBI chrNW_004955448:6,931,891...6,984,662 JBrowse link
GMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hprt1 hypoxanthine phosphoribosyltransferase 1 ISO (PMID:19527031) UniProtKB PMID:19527031 NCBI chrNW_004955473:462,940...510,006 JBrowse link
G Prtfdc1 phosphoribosyl transferase domain containing 1 NOT ISO (PMID:21054786) UniProtKB PMID:21054786 NCBI chrNW_004955429:4,234,806...4,325,896 JBrowse link
GMP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gmpr2 guanosine monophosphate reductase 2 ISO (PMID:22037469) UniProtKB PMID:22037469 NCBI chrNW_004955409:36,166,129...36,173,247 JBrowse link
G Guk1 guanylate kinase 1 ISO RGD PMID:10913137 RGD:5147867 NCBI chrNW_004955581:299,010...305,032 JBrowse link
GTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak3 adenylate kinase 3 ISO (PMID:11485571) BHF-UCL PMID:11485571 NCBI chrNW_004955434:8,998,357...9,010,468 JBrowse link
G Ak4 adenylate kinase 4 ISO (PMID:19766732) BHF-UCL PMID:19766732 NCBI chrNW_004955423:25,395,086...25,402,324 JBrowse link
G Ampd2 adenosine monophosphate deaminase 2 ISO (MGI:MGI:5489878|PMID:22212473)
(MGI:MGI:5506958|PMID:23911318)
CACAO PMID:22212473, PMID:23911318 MGI:MGI:5489878, MGI:MGI:5506958 NCBI chrNW_004955435:13,029,377...13,040,972 JBrowse link
G Ampd3 adenosine monophosphate deaminase 3 ISO (MGI:MGI:5529149|PMID:23078545)
(MGI:MGI:5506958|PMID:23911318)
CACAO PMID:23078545, PMID:23911318 MGI:MGI:5506958, MGI:MGI:5529149 NCBI chrNW_004955414:26,073,192...26,116,448 JBrowse link
G Efl1 elongation factor like GTPase 1 ISO (PMID:21536732) UniProtKB PMID:21536732 NCBI chrNW_004955416:12,658,177...12,789,657 JBrowse link
G Gnai3 G protein subunit alpha i3 ISO (PMID:19478087) UniProtKB PMID:19478087 NCBI chrNW_004955435:12,965,006...13,005,614 JBrowse link
G Gtpbp1 GTP binding protein 1 ISO PMID:21515746 UniProt PMID:21515746 RGD:8553842 NCBI chrNW_004955413:24,823,113...24,849,522 JBrowse link
G Lrrk2 leucine rich repeat kinase 2 ISO (PMID:21048939) BHF-UCL PMID:21048939 NCBI chrNW_004955505:84,324...216,923 JBrowse link
G Mfn1 mitofusin 1 ISO (PMID:27920125) UniProtKB PMID:27920125 NCBI chrNW_004955420:8,541,547...8,596,494 JBrowse link
G Opa1 OPA1 mitochondrial dynamin like GTPase ISO (PMID:20185555) UniProtKB PMID:20185555 NCBI chrNW_004955420:14,927,490...15,007,082 JBrowse link
G Rab23 RAB23, member RAS oncogene family ISO (PMID:22365972) UniProtKB PMID:22365972 NCBI chrNW_004955502:2,947,170...2,980,634 JBrowse link
G Ran RAN, member RAS oncogene family ISO (PMID:26272610) UniProtKB PMID:26272610 NCBI chrNW_004955482:1,222,944...1,223,891 JBrowse link
G Rhoa ras homolog family member A ISO PMID:21440892 BHF-UCL PMID:21440892 RGD:7248703 NCBI chrNW_004955532:1,300,821...1,347,453 JBrowse link
G Rhoq ras homolog family member Q ISO (PMID:10445846) BHF-UCL PMID:10445846 NCBI chrNW_004955441:13,457,757...13,495,221 JBrowse link
IDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix hydrolase 16 ISO (PMID:20385596) UniProtKB PMID:20385596 NCBI chrNW_004955501:7,083,068...7,085,505 JBrowse link
G Nudt9 nudix hydrolase 9 ISO (MGI:MGI:2158549|PMID:11825615) MGI PMID:11825615 MGI:MGI:2158549 NCBI chrNW_004955474:2,402,400...2,438,145 JBrowse link
IMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd2 adenosine monophosphate deaminase 2 ISO (PMID:23911318)
(MGI:MGI:5506958|PMID:23911318)
MGI PMID:23911318 MGI:MGI:5506958 NCBI chrNW_004955435:13,029,377...13,040,972 JBrowse link
G Ampd3 adenosine monophosphate deaminase 3 ISO (MGI:MGI:87193|PMID:9133604)
(MGI:MGI:5506958|PMID:23911318), (MGI:MGI:5512796|PMID:23542464), (MGI:MGI:5529149|PMID:23078545)
MGI PMID:9133604, PMID:23078545, PMID:23542464, PMID:23911318 MGI:MGI:5506958, MGI:MGI:5512796, MGI:MGI:5529149, MGI:MGI:87193 NCBI chrNW_004955414:26,073,192...26,116,448 JBrowse link
IMP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adss1 adenylosuccinate synthase 1 ISO RGD PMID:3759987 RGD:5135303 NCBI chrNW_004955538:3,179,299...3,196,251 JBrowse link
G Adss2 adenylosuccinate synthase 2 ISO RGD PMID:71897 RGD:5135533 NCBI chrNW_004955406:7,684,979...7,715,179 JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 ISO (PMID:19527031) UniProtKB PMID:19527031 NCBI chrNW_004955473:462,940...510,006 JBrowse link
G Nt5c2 5'-nucleotidase, cytosolic II ISO RGD PMID:19913594 RGD:2317226 NCBI chrNW_004955485:7,318,006...7,394,448 JBrowse link
isopentenyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mvd mevalonate diphosphate decarboxylase ISO RGD PMID:197206 RGD:2316852 NCBI chrNW_004955541:2,578,584...2,581,823 JBrowse link
G Mvk mevalonate kinase ISO RGD PMID:197206 RGD:2316852 NCBI chrNW_004955455:8,933,250...8,953,883 JBrowse link
G Pmvk phosphomevalonate kinase ISO RGD PMID:197206 RGD:2316852 NCBI chrNW_004955545:1,421,562...1,440,038 JBrowse link
ITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itpa inosine triphosphatase ISO (MGI:MGI:5009783|PMID:20081199) MGI PMID:20081199 MGI:MGI:5009783 NCBI chrNW_004955415:14,106,786...14,121,975 JBrowse link
ITP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak3 adenylate kinase 3 ISO (PMID:11485571) BHF-UCL PMID:11485571 NCBI chrNW_004955434:8,998,357...9,010,468 JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pipox pipecolic acid and sarcosine oxidase ISO (PMID:10642506) UniProtKB PMID:10642506 NCBI chrNW_004955481:4,128,503...4,225,027 JBrowse link
L-methylmalonyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcee methylmalonyl-CoA epimerase ISO (PMID:11481338) UniProtKB PMID:11481338 NCBI chrNW_004955416:29,684,557...29,703,495 JBrowse link
long-chain fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl1 acyl-CoA synthetase long chain family member 1 ISO RGD PMID:16466685 RGD:2312800 NCBI chrNW_004955403:24,190,674...24,235,354 JBrowse link
G Acsl4 acyl-CoA synthetase long chain family member 4 ISO RGD PMID:16466685 RGD:2312800 NCBI chrNW_004955490:6,143,833...6,228,395 JBrowse link
G Acsl5 acyl-CoA synthetase long chain family member 5 ISO RGD PMID:16466685 RGD:2312800 NCBI chrNW_004955431:17,477,113...17,524,539 JBrowse link
G Acsl6 acyl-CoA synthetase long chain family member 6 ISO RGD PMID:16466685 RGD:2312800 NCBI chrNW_004955408:3,336,214...3,391,117 JBrowse link
long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 ISO (PMID:10578051) BHF-UCL PMID:10578051 NCBI chrNW_004955486:6,188,102...6,258,230 JBrowse link
long-chain fatty-acyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dgat1 diacylglycerol O-acyltransferase 1 ISO (MGI:MGI:2151970|PMID:11481335) BHF-UCL PMID:11481335 MGI:MGI:2151970 NCBI chrNW_004955454:2,933,904...2,944,675 JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 ISO (PMID:11481335)
(MGI:MGI:2151970|PMID:11481335)
BHF-UCL PMID:11481335 MGI:MGI:2151970 NCBI chrNW_004955414:16,059,781...16,089,727 JBrowse link
G Far1 fatty acyl-CoA reductase 1 ISO (PMID:15220348) UniProtKB PMID:15220348 NCBI chrNW_004955414:28,938,535...28,996,622 JBrowse link
G Far2 fatty acyl-CoA reductase 2 ISO (PMID:15220348) UniProtKB PMID:15220348 NCBI chrNW_004955505:5,585,846...5,724,234 JBrowse link
G Them5 thioesterase superfamily member 5 ISO (PMID:22586271) UniProtKB PMID:22586271 NCBI chrNW_004955589:546,592...571,844 JBrowse link
malonyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acacb acetyl-CoA carboxylase beta ISO (MGI:MGI:3804564|PMID:18487439) UniProtKB PMID:18487439 MGI:MGI:3804564 NCBI chrNW_004955455:10,282,308...10,427,439 JBrowse link
medium-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 ISO (PMID:10578051) BHF-UCL PMID:10578051 NCBI chrNW_004955486:6,188,102...6,258,230 JBrowse link
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:6450264|PMID:18799520) UniProt PMID:18799520 MGI:MGI:6450264 NCBI chrNW_004955522:945,186...960,094 JBrowse link
medium-chain fatty-acyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b4 hydroxysteroid 17-beta dehydrogenase 4 ISO (PMID:9089413) UniProtKB PMID:9089413 NCBI chrNW_004955408:39,041,028...39,136,867 JBrowse link
mitochondrial acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mpc1 mitochondrial pyruvate carrier 1 ISO (MGI:MGI:5428352|PMID:22628558) MGI PMID:22628558 MGI:MGI:5428352 NCBI chrNW_004955439:15,515,966...15,531,618 JBrowse link
G Mpc2 mitochondrial pyruvate carrier 2 ISO (MGI:MGI:5428352|PMID:22628558)
(MGI:MGI:5576400|PMID:24910426)
MGI PMID:22628558, PMID:24910426 MGI:MGI:5428352, MGI:MGI:5576400 NCBI chrNW_004955462:9,177,484...9,193,646 JBrowse link
G Pdha1 pyruvate dehydrogenase E1 alpha 1 subunit ISO (MGI:MGI:3817854|PMID:18586888) MGI PMID:18586888 MGI:MGI:3817854 NCBI chrNW_004955586:98,492...114,927 JBrowse link
mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5f1a ATP synthase F1 subunit alpha ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004955402:31,652,226...31,662,114 JBrowse link
G Atp5f1b ATP synthase F1 subunit beta ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004955458:4,188,167...4,195,575 JBrowse link
G Atp5f1c ATP synthase F1 subunit gamma ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004955421:24,234,473...24,253,640 JBrowse link
G Atp5f1d ATP synthase F1 subunit delta ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004955495:6,664,394...6,666,693 JBrowse link
G Atp5f1e ATP synthase F1 subunit epsilon ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004955445:563,642...567,865 JBrowse link
G Atp5me ATP synthase membrane subunit e ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004955404:11,420,964...11,421,171 JBrowse link
G Atp5mf ATP synthase membrane subunit f ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004955460:15,129,651...15,136,722 JBrowse link
G Atp5mg ATP synthase membrane subunit g ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004955412:19,555,736...19,563,094 JBrowse link
G Atp5pb ATP synthase peripheral stalk-membrane subunit b ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004955435:14,940,502...14,952,423 JBrowse link
G Atp5pd ATP synthase peripheral stalk subunit d ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004955553:1,893,767...1,897,175 JBrowse link
G Atp5pf ATP synthase peripheral stalk subunit F6 ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004955407:25,601,253...25,609,933 JBrowse link
G Atp5po ATP synthase peripheral stalk subunit OSCP ISO (PMID:15850986) UniProtKB PMID:15850986 NCBI chrNW_004955407:33,288,194...33,298,817 JBrowse link
G Stoml2 stomatin like 2 ISO (MGI:MGI:3849358|PMID:19360003), (MGI:MGI:5438519|PMID:23028053)
(PMID:21746876)
UniProtKB PMID:19360003, PMID:21746876, PMID:23028053 MGI:MGI:3849358, MGI:MGI:5438519 NCBI chrNW_004955472:1,079,261...1,082,632 JBrowse link
negative regulation of ATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 ISO RGD PMID:21325440 RGD:9685453 NCBI chrNW_004955507:2,035,918...2,141,327 JBrowse link
G Flcn folliculin ISO (MGI:MGI:5463828|PMID:23150719) UniProtKB PMID:23150719 MGI:MGI:5463828 NCBI chrNW_004955577:672,774...694,140 JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO (PMID:24289924) ParkinsonsUK-UCL PMID:24289924 NCBI chrNW_004955489:520,875...557,609 JBrowse link
G Pid1 phosphotyrosine interaction domain containing 1 ISO (PMID:20165904) BHF-UCL PMID:20165904 NCBI chrNW_004955453:5,680,418...5,913,236 JBrowse link
negative regulation of glycolytic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 ISO (MGI:MGI:3759354|PMID:17828264) UniProtKB PMID:17828264 MGI:MGI:3759354 NCBI chrNW_004955422:18,799,372...18,812,458 JBrowse link
G Cbfa2t3 CBFA2/RUNX1 partner transcriptional co-repressor 3 ISO (PMID:23840896) UniProtKB PMID:23840896 NCBI chrNW_004955541:2,724,369...2,777,540 JBrowse link
G Ddit4 DNA damage inducible transcript 4 ISO (MGI:MGI:4440406|PMID:20176937) MGI PMID:20176937 MGI:MGI:4440406 NCBI chrNW_004955437:19,322,407...19,324,562 JBrowse link
G Fbp1 fructose-bisphosphatase 1 ISO (PMID:19881551)
(PMID:25043030)
UniProtKB
CAFA
PMID:19881551, PMID:25043030 NCBI chrNW_004955422:21,537,337...21,569,174 JBrowse link
G Hdac4 histone deacetylase 4 ISO (MGI:MGI:4365327|PMID:19109424) BHF-UCL PMID:19109424 MGI:MGI:4365327 NCBI chrNW_004955542:1,629,691...1,886,160 JBrowse link
G Ier3 immediate early response 3 ISO (MGI:MGI:4437986|PMID:19096392) MGI PMID:19096392 MGI:MGI:4437986 NCBI chrNW_004955583:730,353...731,301 JBrowse link
G Mtch2 mitochondrial carrier 2 ISO (MGI:MGI:5662300|PMID:26219591) MGI PMID:26219591 MGI:MGI:5662300 NCBI chrNW_004955422:672,301...690,989 JBrowse link
G Myog myogenin ISO RGD PMID:10225962 RGD:9686132 NCBI chrNW_004955406:39,099,044...39,102,479 JBrowse link
G Ncor1 nuclear receptor corepressor 1 ISO (PMID:19955185) BHF-UCL PMID:19955185 NCBI chrNW_004955467:1,408,292...1,568,539 JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator ISO (PMID:30451898) UniProt PMID:30451898 NCBI chrNW_004955493:6,746,380...6,747,763 JBrowse link
G Ppara peroxisome proliferator activated receptor alpha ISO (PMID:19955185) BHF-UCL PMID:19955185 NCBI chrNW_004955413:30,306,563...30,366,245 JBrowse link
G Ppargc1a PPARG coactivator 1 alpha ISO RGD PMID:22343369 RGD:7242186 NCBI chrNW_004955480:543,397...1,188,376 JBrowse link
G Sirt6 sirtuin 6 ISO (MGI:MGI:4881401|PMID:20141841), (MGI:MGI:5619441|PMID:23217706) CACAO PMID:20141841, PMID:23217706 MGI:MGI:4881401, MGI:MGI:5619441 NCBI chrNW_004955495:4,641,883...4,650,518 JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO (MGI:MGI:5441121|PMID:22891351) MGI PMID:22891351 MGI:MGI:5441121 NCBI chrNW_004955451:16,320,326...16,348,505 JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase ISO (MGI:MGI:4867601|PMID:20935145) MGI PMID:20935145 MGI:MGI:4867601 NCBI chrNW_004955413:2,129,719...2,153,873 JBrowse link
negative regulation of glycolytic process through fructose-6-phosphate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc4a1 solute carrier family 4 member 1 (Diego blood group) ISO (MGI:MGI:3820439|PMID:18698006) MGI PMID:18698006 MGI:MGI:3820439 NCBI chrNW_004955451:17,318,600...17,330,943 JBrowse link
positive regulation of ATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2l1 BCL2 like 1 ISO PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chrNW_004955422:29,254,440...29,307,104 JBrowse link
G Eno1 enolase 1 ISO (PMID:15459207) CAFA PMID:15459207 NCBI chrNW_004955486:4,275,371...4,287,152 JBrowse link
G Il4 interleukin 4 ISO (MGI:MGI:6304699|PMID:29061364) ARUK-UCL PMID:29061364 MGI:MGI:6304699 NCBI chrNW_004955408:4,058,052...4,065,999 JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO PMID:15459207 CAFA PMID:15459207 RGD:12793039 NCBI chrNW_004955450:9,181,851...9,205,277 JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:22629444 RGD:7240532 NCBI chrNW_004955461:2,714,022...2,718,872 JBrowse link
G Ndufc2 NADH:ubiquinone oxidoreductase subunit C2 ISO RGD PMID:26888427 RGD:11040458 NCBI chrNW_004955414:13,867,880...13,878,040 JBrowse link
G Pid1 phosphotyrosine interaction domain containing 1 ISO (MGI:MGI:5306739|PMID:21080215) BHF-UCL PMID:21080215 MGI:MGI:5306739 NCBI chrNW_004955453:5,680,418...5,913,236 JBrowse link
G Ppargc1a PPARG coactivator 1 alpha ISO (MGI:MGI:5463828|PMID:23150719) UniProtKB PMID:23150719 MGI:MGI:5463828 NCBI chrNW_004955480:543,397...1,188,376 JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase ISO RGD PMID:24096089 RGD:10413842 NCBI chrNW_004955439:18,664,230...19,953,358 JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:24747689) AgBase PMID:24747689 NCBI chrNW_004955425:20,280,725...20,307,663 JBrowse link
G Slc25a12 solute carrier family 25 member 12 ISO RGD PMID:19764902 RGD:13628741 NCBI chrNW_004955449:3,093,603...3,182,513 JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO RGD PMID:23590160 RGD:8694322 NCBI chrNW_004955451:16,320,326...16,348,505 JBrowse link
G Taz tafazzin ISO RGD PMID:20348225 RGD:13432160 NCBI chrNW_004955580:915,668...921,703 JBrowse link
G Tmsb4x thymosin beta 4 X-linked ISO (PMID:21106936) CAFA PMID:21106936 NCBI chrNW_004955544:266,397...268,447 JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 ISO (MGI:MGI:5906931|PMID:28802038) ARUK-UCL PMID:28802038 MGI:MGI:5906931 NCBI chrNW_004955437:7,780,886...7,785,597 JBrowse link
G Vcp valosin containing protein ISO (PMID:23498975) ParkinsonsUK-UCL PMID:23498975 NCBI chrNW_004955472:1,111,649...1,124,076 JBrowse link
positive regulation of glycolytic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein ISO (PMID:29061364) ARUK-UCL PMID:29061364 NCBI chrNW_004955407:25,725,259...25,973,582 JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) ISO (MGI:MGI:4881347|PMID:21074248) UniProtKB PMID:21074248 MGI:MGI:4881347 NCBI chrNW_004955523:1,407,812...1,441,829 JBrowse link
G Esrrb estrogen related receptor beta ISO PMID:24481529 BHF-UCL PMID:24481529 RGD:12910990 NCBI chrNW_004955438:365,375...534,086 JBrowse link
G Gck glucokinase ISO RGD PMID:17553851 RGD:2301905 NCBI chrNW_004955456:7,784,269...7,838,260 JBrowse link
G Gpd1 glycerol-3-phosphate dehydrogenase 1 ISO (MGI:MGI:1927687|PMID:11147825) MGI PMID:11147825 MGI:MGI:1927687 NCBI chrNW_004955547:676,661...683,906 JBrowse link
G Htr2a 5-hydroxytryptamine receptor 2A ISO (MGI:MGI:3766710|PMID:17408640) MGI PMID:17408640 MGI:MGI:3766710 NCBI chrNW_004955431:583,165...646,991 JBrowse link
G Ifng interferon gamma ISO (MGI:MGI:6304699|PMID:29061364) ARUK-UCL PMID:29061364 MGI:MGI:6304699 NCBI chrNW_004955458:14,643,333...14,648,020 JBrowse link
G Igf1 insulin like growth factor 1 ISO (PMID:7688386) BHF-UCL PMID:7688386 NCBI chrNW_004955405:37,505,830...37,582,152 JBrowse link
G Ins insulin ISO (PMID:7688386)
(PMID:381941)
BHF-UCL PMID:381941, PMID:7688386 NCBI chrNW_004955422:13,909,408...13,910,419 JBrowse link
G Insr insulin receptor ISO (PMID:7693131) BHF-UCL PMID:7693131 NCBI chrNW_004955563:1,867,400...2,011,845 JBrowse link
G Mif macrophage migration inhibitory factor ISO RGD PMID:11086030 RGD:1642010 NCBI chrNW_004955455:8,367,566...8,368,460 JBrowse link
G Mlxipl MLX interacting protein like ISO (MGI:MGI:3041761|PMID:15118080)
(PMID:19995986)
BHF-UCL PMID:15118080, PMID:19995986 MGI:MGI:3041761 NCBI chrNW_004955456:14,096,530...14,116,687 JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:22842522 RGD:7207891 NCBI chrNW_004955461:2,714,022...2,718,872 JBrowse link
G P2rx7 purinergic receptor P2X 7 ISO (PMID:22898868) CACAO PMID:22898868 NCBI chrNW_004955482:7,048,674...7,087,525 JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 ISO PMID:11069105 UniProt PMID:11069105 RGD:8554193 NCBI chrNW_004955426:25,079,718...25,102,090 JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 ISO PMID:11069105 UniProt PMID:11069105 RGD:8554193 NCBI chrNW_004955464:2,996,608...3,062,197 JBrowse link
G Psen1 presenilin 1 ISO (PMID:29061364) ARUK-UCL PMID:29061364 NCBI chrNW_004955523:2,128,529...2,210,737 JBrowse link
G Slc4a4 solute carrier family 4 member 4 ISO (MGI:MGI:5295108|PMID:21976511)
(PMID:21976511)
ARUK-UCL PMID:21976511 MGI:MGI:5295108 NCBI chrNW_004955447:1,599,986...1,900,791 JBrowse link
G Zbtb20 zinc finger and BTB domain containing 20 ISO (MGI:MGI:5913553|PMID:28327662) UniProtKB PMID:28327662 MGI:MGI:5913553 NCBI chrNW_004955427:14,409,700...15,231,495 JBrowse link
positive regulation of proton-transporting ATP synthase activity, rotational mechanism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atpsckmt ATP synthase c subunit lysine N-methyltransferase ISO (MGI:MGI:6277238|PMID:30530489)
(PMID:30530489)
UniProt PMID:30530489 MGI:MGI:6277238 NCBI chrNW_004955426:116,223...131,798 JBrowse link
G Tmsb4x thymosin beta 4 X-linked ISO (PMID:21106936) CAFA PMID:21106936 NCBI chrNW_004955544:266,397...268,447 JBrowse link
propionyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:17371050) BHF-UCL PMID:17371050 NCBI chrNW_004955412:10,350,088...10,369,806 JBrowse link
propionyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:6450264|PMID:18799520) UniProt PMID:18799520 MGI:MGI:6450264 NCBI chrNW_004955522:945,186...960,094 JBrowse link
purine ribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hint1 histidine triad nucleotide binding protein 1 ISO (PMID:16835243) UniProtKB PMID:16835243 NCBI chrNW_004955408:2,673,950...2,678,528 JBrowse link
regulation of acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdk1 pyruvate dehydrogenase kinase 1 ISO (MGI:MGI:5487511|PMID:22195962) UniProtKB PMID:22195962 MGI:MGI:5487511 NCBI chrNW_004955449:2,546,790...2,582,402 JBrowse link
G Pdk2 pyruvate dehydrogenase kinase 2 ISO (MGI:MGI:5428826|PMID:22360721) UniProtKB PMID:22360721 MGI:MGI:5428826 NCBI chrNW_004955451:11,547,660...11,559,266 JBrowse link
G Pdk3 pyruvate dehydrogenase kinase 3 ISO (PMID:22865452) UniProtKB PMID:22865452 NCBI chrNW_004955509:4,809,422...4,888,802 JBrowse link
G Pdk4 pyruvate dehydrogenase kinase 4 ISO (MGI:MGI:3692363|PMID:16606348)
(PMID:21852536)
UniProtKB PMID:16606348, PMID:21852536 MGI:MGI:3692363 NCBI chrNW_004955432:12,169,548...12,182,064 JBrowse link
regulation of acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snca synuclein alpha ISO (MGI:MGI:3629421|PMID:16734431)
(MGI:MGI:3628986|PMID:16636270)
MGI PMID:16636270, PMID:16734431 MGI:MGI:3628986, MGI:MGI:3629421 NCBI chrNW_004955405:854,011...962,741 JBrowse link
regulation of ATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak4 adenylate kinase 4 ISO (PMID:24767988) UniProt PMID:24767988 NCBI chrNW_004955423:25,395,086...25,402,324 JBrowse link
G Sphk2 sphingosine kinase 2 ISO (MGI:MGI:5641585|PMID:25637806) UniProt PMID:25637806 MGI:MGI:5641585 NCBI chrNW_004955559:1,921,479...1,929,450 JBrowse link
regulation of glycolytic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif6 eukaryotic translation initiation factor 6 ISO (MGI:MGI:5699484|PMID:26383020) UniProtKB PMID:26383020 MGI:MGI:5699484 NCBI chrNW_004956210:226...6,819 JBrowse link
G Ep300 E1A binding protein p300 ISO (PMID:29775581) UniProt PMID:29775581 NCBI chrNW_004955413:26,647,553...26,727,875 JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO (MGI:MGI:3709696|PMID:17437992) MGI PMID:17437992 MGI:MGI:3709696 NCBI chrNW_004955466:8,000,311...8,022,497 JBrowse link
G Jmjd8 jumonji domain containing 8 ISO (PMID:27199445) UniProt PMID:27199445 NCBI chrNW_004955442:16,519,394...16,521,106 JBrowse link
G Mlxipl MLX interacting protein like ISO RGD PMID:11724780 RGD:634534 NCBI chrNW_004955456:14,096,530...14,116,687 JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase ISO (PMID:22923583) UniProtKB PMID:22923583 NCBI chrNW_004955475:11,062,258...11,112,252 JBrowse link
G Pgam1 phosphoglycerate mutase 1 ISO (PMID:12189148) UniProtKB PMID:12189148 NCBI chrNW_004955507:3,562,513...3,571,400 JBrowse link
G Prkag2 protein kinase AMP-activated non-catalytic subunit gamma 2 ISO (PMID:15877279) BHF-UCL PMID:15877279 NCBI chrNW_004955491:5,852,534...6,048,820 JBrowse link
G Slc2a6 solute carrier family 2 member 6 ISO (PMID:30431159)
(MGI:MGI:6276413|PMID:30431159)
UniProt PMID:30431159 MGI:MGI:6276413 NCBI chrNW_004955513:2,796,086...2,802,051 JBrowse link
G Trex1 three prime repair exonuclease 1 ISO (MGI:MGI:5829115|PMID:28069950) MGI PMID:28069950 MGI:MGI:5829115 NCBI chrNW_004955532:533,877...535,767 JBrowse link
G Zbtb7a zinc finger and BTB domain containing 7A ISO (PMID:26455326) UniProt PMID:26455326 NCBI chrNW_004955495:4,747,905...4,754,066 JBrowse link
regulation of mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atpsckmt ATP synthase c subunit lysine N-methyltransferase ISO (MGI:MGI:6277238|PMID:30530489)
(PMID:30530489)
UniProt PMID:30530489 MGI:MGI:6277238 NCBI chrNW_004955426:116,223...131,798 JBrowse link
G Dnajc30 DnaJ heat shock protein family (Hsp40) member C30 ISO (MGI:MGI:6245118|PMID:30318146) UniProt PMID:30318146 MGI:MGI:6245118 NCBI chrNW_004955456:14,057,517...14,058,729 JBrowse link
regulation of pyruvate kinase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jmjd8 jumonji domain containing 8 ISO (PMID:27199445) UniProt PMID:27199445 NCBI chrNW_004955442:16,519,394...16,521,106 JBrowse link
ribonucleotide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase ISO RGD PMID:4078017 RGD:2301990 NCBI chrNW_004955457:704,213...729,702 JBrowse link
G Rnaseh2b ribonuclease H2 subunit B ISO (MGI:MGI:5435090|PMID:22802351) MGI PMID:22802351 MGI:MGI:5435090 NCBI chrNW_004955431:4,291,687...4,368,169 JBrowse link
ribose phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G G6pd glucose-6-phosphate dehydrogenase ISO (PMID:2420826) BHF-UCL PMID:2420826 NCBI chrNW_004955580:1,045,294...1,058,129 JBrowse link
G Tkt transketolase ISO RGD PMID:16116031 RGD:1580394 NCBI chrNW_004955430:3,178,830...3,193,241 JBrowse link
succinyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlst dihydrolipoamide S-succinyltransferase ISO (PMID:10806400) UniProt PMID:10806400 NCBI chrNW_004955523:660,413...680,878 JBrowse link
G Ogdh oxoglutarate dehydrogenase ISO (PMID:24495017), (PMID:29211711) RGD
UniProtKB
PMID:9712727, PMID:24495017, PMID:29211711 RGD:2306877 NCBI chrNW_004955456:7,416,343...7,484,889 JBrowse link
G Sucla2 succinate-CoA ligase ADP-forming beta subunit ISO RGD PMID:17403370 RGD:2306915 NCBI chrNW_004955431:1,678,720...1,737,234 JBrowse link
G Suclg1 succinate-CoA ligase alpha subunit ISO RGD PMID:7430155, PMID:17403370 RGD:2306879, RGD:2306915 NCBI chrNW_004955424:2,810,557...2,838,827 JBrowse link
G Suclg2 succinate-CoA ligase GDP-forming beta subunit ISO RGD PMID:7430155, PMID:17403370 RGD:2306879, RGD:2306915 NCBI chrNW_004955421:20,089,471...20,350,334 JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kynu kynureninase ISO RGD PMID:7236232 RGD:2303721 NCBI chrNW_004955440:9,420,141...9,536,767 JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase ISO RGD PMID:7236232 RGD:2303721 NCBI chrNW_004955471:11,229,795...11,245,255 JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chrNW_004955464:11,179,432...11,213,147 JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 ISO (PMID:9556635) UniProtKB PMID:9556635 NCBI chrNW_004955403:46,609,211...46,637,622 JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Umps uridine monophosphate synthetase ISO (PMID:11730338), (PMID:6893554) UniProtKB
RGD
PMID:6134725, PMID:6893554, PMID:11730338 RGD:5132277 NCBI chrNW_004955427:23,825,529...23,841,427 JBrowse link
G Uprt uracil phosphoribosyltransferase homolog ISO RGD PMID:1476792 RGD:5132591 NCBI chrNW_004955562:1,385,617...1,415,277 JBrowse link
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase ISO RGD PMID:10659854 RGD:2303528 NCBI chrNW_004955469:9,203,433...9,227,526 JBrowse link
UTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak3 adenylate kinase 3 ISO (PMID:11485571) BHF-UCL PMID:11485571 NCBI chrNW_004955434:8,998,357...9,010,468 JBrowse link
very long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd1 ATP binding cassette subfamily D member 1 ISO (PMID:23671276) UniProtKB PMID:23671276 NCBI chrNW_004955580:459,715...475,363 JBrowse link
very long-chain fatty-acyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b4 hydroxysteroid 17-beta dehydrogenase 4 ISO (PMID:9482850) UniProtKB PMID:9482850 NCBI chrNW_004955408:39,041,028...39,136,867 JBrowse link
XDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix hydrolase 16 ISO (PMID:20385596) UniProtKB PMID:20385596 NCBI chrNW_004955501:7,083,068...7,085,505 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11862
    metabolic process 7593
      organic substance metabolic process 7299
        organophosphate metabolic process 642
          ribose phosphate metabolic process 248
            5-phosphoribose 1-diphosphate metabolic process + 3
            D-ribose 5-phosphate metabolic process + 0
            ribonucleotide metabolic process + 243
            ribose phosphate biosynthetic process + 112
Path 2
Term Annotations click to browse term
  biological_process 11862
    metabolic process 7593
      cellular metabolic process 7005
        phosphorus metabolic process 2371
          phosphate-containing compound metabolic process 2360
            ribose phosphate metabolic process 248
              5-phosphoribose 1-diphosphate metabolic process + 3
              D-ribose 5-phosphate metabolic process + 0
              ribonucleotide metabolic process + 243
              ribose phosphate biosynthetic process + 112
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.