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ONTOLOGY REPORT - ANNOTATIONS

Term:NAD metabolic process
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Accession:GO:0019674 term browser browse the term
Definition:The chemical reactions and pathways involving nicotinamide adenine dinucleotide (NAD), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid.
Synonyms:exact_synonym: NAD metabolism;   nicotinamide adenine dinucleotide metabolic process;   nicotinamide adenine dinucleotide metabolism;   oxidized NAD metabolic process;   oxidized NAD metabolism;   oxidized nicotinamide adenine dinucleotide metabolic process;   oxidized nicotinamide adenine dinucleotide metabolism
 narrow_synonym: NAD phosphorylation and dephosphorylation


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NAD metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpd1l glycerol-3-phosphate dehydrogenase 1 like involved_in ISO (PMID:19745168) RGD PMID:19745168 NCBI chr 8:114,591,103...114,620,771
Ensembl chr 8:114,588,487...114,620,723 		JBrowse link
G Kmo kynurenine 3-monooxygenase involved_in IDA
ISO		 PMID:1332540
(PMID:23575632), (PMID:29429898)		 RGD PMID:23575632 PMID:29429898 PMID:1332540 RGD:8554522 NCBI chr13:87,557,080...87,589,334
Ensembl chr13:87,557,286...87,588,881 		JBrowse link
G Ldha lactate dehydrogenase A IDA RGD PMID:17447164 RGD:1624966 NCBI chr 1:97,371,823...97,381,247
Ensembl chr 1:97,366,021...97,433,472 		JBrowse link
G Ldhb lactate dehydrogenase B IDA RGD PMID:17447164 RGD:1624966 NCBI chr 4:175,428,382...175,446,403
Ensembl chr 4:175,428,385...175,446,403 		JBrowse link
G Mdh1 malate dehydrogenase 1 IDA RGD PMID:17447164 RGD:1624966 NCBI chr14:95,630,625...95,645,920
Ensembl chr14:95,630,306...95,645,925 		JBrowse link
G Nadk NAD kinase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:166,145,708...166,176,328
Ensembl chr 5:166,145,481...166,176,322 		JBrowse link
G Nadk2 NAD kinase 2, mitochondrial involved_in ISO
IBA
ISS
IEA		 (PMID:23212377)
GO_REF:0000033
GO_REF:0000024
GO_REF:0000104		 RGD
GO_Central
UniProt		 PMID:23212377 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr 2:58,117,674...58,159,815
Ensembl chr 2:58,117,674...58,159,808 		JBrowse link
'de novo' NAD biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nadsyn1 NAD synthetase 1 involved_in ISO
IEA
ISS		 (PMID:31883644)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:31883644 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:198,981,559...199,009,853
Ensembl chr 1:198,981,604...199,009,869 		JBrowse link
'de novo' NAD biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afmid arylformamidase involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr10:103,046,129...103,061,718
Ensembl chr10:103,046,180...103,061,718 		JBrowse link
G Haao 3-hydroxyanthranilate 3,4-dioxygenase involved_in IEA
IBA		 GO_REF:0000104
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000104 NCBI chr 6:10,845,235...10,864,863
Ensembl chr 6:10,845,771...10,864,877 		JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000104		 GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000104 NCBI chr16:67,430,654...67,442,726
Ensembl chr16:67,430,578...67,442,730 		JBrowse link
G Ido2 indoleamine 2,3-dioxygenase 2 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000104		 GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000104 NCBI chr16:67,459,158...67,498,052
Ensembl chr16:67,459,190...67,496,324 		JBrowse link
G Kmo kynurenine 3-monooxygenase involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr13:87,557,080...87,589,334
Ensembl chr13:87,557,286...87,588,881 		JBrowse link
G Kynu kynureninase involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:27,778,646...27,929,470
Ensembl chr 3:27,778,772...27,929,488 		JBrowse link
canonical glycolysis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eno1 enolase 1 involved_in ISO
IDA		 (PMID:29775581), (PMID:3529090)
PMID:15041191		 RGD PMID:3529090 PMID:29775581 PMID:15041191 RGD:2302788 NCBI chr 5:160,719,951...160,731,337
Ensembl chr 5:160,719,951...160,731,336 		JBrowse link
G Eno2 enolase 2 involved_in IDA PMID:15041191 CAFA PMID:15041191 RGD:2302788 NCBI chr 4:157,572,085...157,580,971
Ensembl chr 4:157,572,088...157,580,980 		JBrowse link
G Eno3 enolase 3 involved_in IEA
ISO		 GO_REF:0000107
MGI:1196256 (PMID:27760309)		 Ensembl
RGD		 PMID:27760309 GO_REF:0000107 NCBI chr10:55,370,531...55,375,921
Ensembl chr10:55,366,975...55,375,921 		JBrowse link
G Foxk1 forkhead box K1 acts_upstream_of ISO (PMID:30700909) RGD PMID:30700909 NCBI chr12:12,110,119...12,175,089
Ensembl chr12:12,115,950...12,175,089 		JBrowse link
G Foxk2 forkhead box K2 acts_upstream_of ISO (MGI:6281052|PMID:30700909) RGD PMID:30700909 MGI:6281052 NCBI chr10:106,542,643...106,592,569
Ensembl chr10:106,542,566...106,592,563 		JBrowse link
G Gapdh glyceraldehyde-3-phosphate dehydrogenase involved_in ISO (PMID:10777777), (PMID:12581789), (PMID:28918937) RGD PMID:10777777 PMID:12581789 PMID:28918937 NCBI chr 4:157,962,312...157,967,158
Ensembl chr 4:157,962,343...157,966,235 		JBrowse link
G Hk1 hexokinase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:4275392)		 Ensembl
RGD		 PMID:4275392 GO_REF:0000107 NCBI chr20:30,230,488...30,332,099
Ensembl chr20:30,230,486...30,332,131 		JBrowse link
G Pfkl phosphofructokinase, liver type involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:10,664,285...10,686,324
Ensembl chr20:10,664,272...10,686,315 		JBrowse link
G Pfkm phosphofructokinase, muscle involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
MGI:4356541 (PMID:19696889)
MGI:1196256 (PMID:27760309), (PMID:28049690), (PMID:4275392)		 Ensembl
GO_Central
RGD		 PMID:4275392 PMID:19696889 PMID:27760309 PMID:28049690 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:129,221,679...129,259,192
Ensembl chr 7:129,221,653...129,259,192 		JBrowse link
G Pfkp phosphofructokinase, platelet involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:63,729,743...63,794,026
Ensembl chr17:63,729,780...63,794,018 		JBrowse link
G Pgam1 phosphoglycerate mutase 1 involved_in ISO (PMID:12189148) RGD PMID:12189148 NCBI chr 1:240,723,832...240,731,443
Ensembl chr 1:240,723,920...240,738,452 		JBrowse link
G Pgam2 phosphoglycerate mutase 2 involved_in ISO (PMID:23951293) RGD PMID:23951293 NCBI chr14:80,681,796...80,683,907
Ensembl chr14:80,681,776...80,683,940 		JBrowse link
G Pgk1 phosphoglycerate kinase 1 involved_in ISO MGI:3780541 (PMID:30174313) RGD PMID:30174313 NCBI chr  X:71,271,454...71,287,429
Ensembl chr  X:71,271,440...71,287,418 		JBrowse link
G Pkm pyruvate kinase M1/2 involved_in ISO (PMID:28630053) RGD PMID:28630053 NCBI chr 8:60,057,629...60,079,600
Ensembl chr 8:60,057,402...60,079,599 		JBrowse link
G Tpi1 triosephosphate isomerase 1 involved_in ISO MGI:3780541 (PMID:30174313) RGD PMID:30174313 NCBI chr 4:157,615,283...157,618,813
Ensembl chr 4:157,615,386...157,619,541 		JBrowse link
glycerophosphate shuttle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpd1 glycerol-3-phosphate dehydrogenase 1 acts_upstream_of_or_within ISO MGI:3692960 (PMID:11147825) RGD PMID:11147825 NCBI chr 7:130,842,526...130,851,530
Ensembl chr 7:130,844,138...130,851,529 		JBrowse link
NAD biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aspdh aspartate dehydrogenase domain containing involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:94,956,327...94,960,722
Ensembl chr 1:94,958,316...94,960,722 		JBrowse link
G Haao 3-hydroxyanthranilate 3,4-dioxygenase involved_in ISO (PMID:28792876) RGD PMID:28792876 NCBI chr 6:10,845,235...10,864,863
Ensembl chr 6:10,845,771...10,864,877 		JBrowse link
G Kynu kynureninase involved_in ISS
ISO		 GO_REF:0000024
(PMID:28792876)		 UniProt
RGD		 PMID:28792876 GO_REF:0000024 NCBI chr 3:27,778,646...27,929,470
Ensembl chr 3:27,778,772...27,929,488 		JBrowse link
G Nadsyn1 NAD synthetase 1 involved_in IEA
IBA		 GO_REF:0000041
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 NCBI chr 1:198,981,559...199,009,853
Ensembl chr 1:198,981,604...199,009,869 		JBrowse link
G Nampt nicotinamide phosphoribosyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000041
(PMID:15381699)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:15381699 GO_REF:0000033 GO_REF:0000041 NCBI chr 6:49,425,316...49,462,109
Ensembl chr 6:49,424,332...49,462,100 		JBrowse link
G Naprt nicotinate phosphoribosyltransferase involved_in IDA
IEA		 GO_REF:0000041 UniProt
RGD		 PMID:8694849 GO_REF:0000041, RGD:2289495 NCBI chr 7:107,576,645...107,580,102
Ensembl chr 7:107,576,627...107,580,102 		JBrowse link
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 involved_in
acts_upstream_of_or_within		 ISO
IBA
IEA		 (MGI:6206974|PMID:27735788)
(PMID:15381699), (PMID:16914673)
GO_REF:0000033
GO_REF:0000041		 RGD
GO_Central
UniProt		 PMID:15381699 PMID:16914673 PMID:27735788 GO_REF:0000033 GO_REF:0000041 MGI:6206974 NCBI chr 5:159,910,242...159,928,201
Ensembl chr 5:159,910,242...159,928,180 		JBrowse link
G Nmnat2 nicotinamide nucleotide adenylyltransferase 2 involved_in IMP
IBA
IEA		 GO_REF:0000033
GO_REF:0000041		 GO_Central
UniProt
RGD		 PMID:22449973 GO_REF:0000033 GO_REF:0000041, RGD:13782043 NCBI chr13:65,105,950...65,277,350
Ensembl chr13:65,105,950...65,278,484 		JBrowse link
G Nmnat3 nicotinamide nucleotide adenylyltransferase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000041
(PMID:16914673)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:16914673 GO_REF:0000033 GO_REF:0000041 NCBI chr 8:98,892,168...99,003,912
Ensembl chr 8:98,873,398...99,020,645 		JBrowse link
G Nmrk1 nicotinamide riboside kinase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:216,049,350...216,076,792
Ensembl chr 1:216,049,437...216,076,791 		JBrowse link
G Qprt quinolinate phosphoribosyltransferase involved_in IDA
IBA
IEA		 GO_REF:0000033
GO_REF:0000041		 GO_Central
UniProt
RGD		 PMID:8694849 GO_REF:0000033 GO_REF:0000041, RGD:2289495 NCBI chr 1:181,718,189...181,733,486
Ensembl chr 1:181,718,190...181,733,486 		JBrowse link
NAD catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Art2b ADP-ribosyltransferase 2b involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:155,956,601...155,974,252
Ensembl chr 1:155,956,603...155,974,253 		JBrowse link
G Nudt12 nudix hydrolase 12 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:12790796)
GO_REF:0000033		 RGD
GO_Central		 PMID:12790796 GO_REF:0000033 NCBI chr 9:98,741,627...98,755,039
Ensembl chr 9:98,742,360...98,755,039 		JBrowse link
G Nudt17 nudix hydrolase 17 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:184,241,468...184,243,960
Ensembl chr 2:184,241,468...184,243,960 		JBrowse link
G Sarm1 sterile alpha and TIR motif containing 1 involved_in ISO (PMID:25908823), (PMID:27671644), (PMID:28334607), (PMID:31128467), (PMID:31439792), (PMID:31439793), (PMID:32049506), (PMID:32828421), (PMID:33053563)
(MGI:6114587|PMID:28334607), (MGI:6206974|PMID:27735788), (MGI:6508517|PMID:32312889)		 RGD PMID:25908823 PMID:27671644 PMID:27735788 PMID:28334607 PMID:31128467 More... MGI:6114587 MGI:6206974 MGI:6508517 NCBI chr10:63,369,456...63,393,016
Ensembl chr10:63,369,456...63,392,822 		JBrowse link
NAD salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naprt nicotinate phosphoribosyltransferase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:107,576,645...107,580,102
Ensembl chr 7:107,576,627...107,580,102 		JBrowse link
NADH metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlst dihydrolipoamide S-succinyltransferase IDA RGD PMID:9405249 RGD:1359804 NCBI chr 6:104,758,511...104,783,296
Ensembl chr 6:104,758,631...104,783,296 		JBrowse link
G Gpd1 glycerol-3-phosphate dehydrogenase 1 IDA RGD PMID:12351438 RGD:2303499 NCBI chr 7:130,842,526...130,851,530
Ensembl chr 7:130,844,138...130,851,529 		JBrowse link
G Gpd1l glycerol-3-phosphate dehydrogenase 1 like acts_upstream_of_or_within ISO (PMID:19745168) RGD PMID:19745168 NCBI chr 8:114,591,103...114,620,771
Ensembl chr 8:114,588,487...114,620,723 		JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 IDA RGD PMID:12351438 RGD:2303499 NCBI chr 3:41,800,552...41,937,729
Ensembl chr 3:41,801,930...41,936,901 		JBrowse link
G Mdh1 malate dehydrogenase 1 involved_in IDA
IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:34547241)		 GO_Central
Ensembl
RGD		 PMID:34547241 PMID:12351438 GO_REF:0000033 GO_REF:0000107, RGD:2303499 NCBI chr14:95,630,625...95,645,920
Ensembl chr14:95,630,306...95,645,925 		JBrowse link
G Mdh1b malate dehydrogenase 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:65,120,370...65,168,008
Ensembl chr 9:65,119,029...65,167,933 		JBrowse link
G Mdh2 malate dehydrogenase 2 IDA RGD PMID:12351438 RGD:2303499 NCBI chr12:20,894,269...20,907,225
Ensembl chr12:20,894,262...20,907,271 		JBrowse link
G Me1 malic enzyme 1 involved_in ISO
IEA		 (PMID:34547241)
GO_REF:0000107		 RGD
Ensembl		 PMID:34547241 GO_REF:0000107 NCBI chr 8:87,549,043...87,660,251
Ensembl chr 8:87,549,043...87,660,304 		JBrowse link
G Nudt12 nudix hydrolase 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:98,741,627...98,755,039
Ensembl chr 9:98,742,360...98,755,039 		JBrowse link
G Nudt13 nudix hydrolase 13 involved_in ISO (MGI:6368098|PMID:28755312) RGD PMID:28755312 MGI:6368098 NCBI chr15:4,001,787...4,022,404
Ensembl chr15:4,001,794...4,022,293 		JBrowse link
G Nudt17 nudix hydrolase 17 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:184,241,468...184,243,960
Ensembl chr 2:184,241,468...184,243,960 		JBrowse link
G Ogdh oxoglutarate dehydrogenase IDA RGD PMID:9712727 RGD:2306877 NCBI chr14:81,150,021...81,217,479
Ensembl chr14:81,150,091...81,217,479 		JBrowse link
G Pc pyruvate carboxylase involved_in ISO
IEA		 (PMID:34547241)
GO_REF:0000107		 RGD
Ensembl		 PMID:34547241 GO_REF:0000107 NCBI chr 1:201,799,374...201,898,412
Ensembl chr 1:201,804,267...201,898,380 		JBrowse link
G Vcp valosin-containing protein involved_in ISO (PMID:23498975) RGD PMID:23498975 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571 		JBrowse link
NADH oxidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldob aldolase, fructose-bisphosphate B involved_in ISO
IEA		 (PMID:17576770)
GO_REF:0000107		 RGD
Ensembl		 PMID:17576770 GO_REF:0000107 NCBI chr 5:63,889,045...63,902,086
Ensembl chr 5:63,889,046...63,902,116 		JBrowse link
G Gpd1 glycerol-3-phosphate dehydrogenase 1 involved_in
acts_upstream_of_or_within		 IDA
IEA
ISO
IBA		 GO_REF:0000002
MGI:3692960 (PMID:11147825)
GO_REF:0000033		 InterPro
RGD
GO_Central		 PMID:11147825 PMID:9550546 GO_REF:0000002 GO_REF:0000033, RGD:1641824 NCBI chr 7:130,842,526...130,851,530
Ensembl chr 7:130,844,138...130,851,529 		JBrowse link
G Gpd1l glycerol-3-phosphate dehydrogenase 1 like NOT|involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:114,591,103...114,620,771
Ensembl chr 8:114,588,487...114,620,723 		JBrowse link
G Gpd1l2 glycerol-3-phosphate dehydrogenase 1 like 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:91,940,258...91,942,125
Ensembl chr 7:91,940,260...91,942,559 		JBrowse link
G Gpd1l3 glycerol-3-phosphate dehydrogenase 1 like 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:10,523,777...10,527,072
Ensembl chr 4:10,522,914...10,527,084 		JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 IDA RGD PMID:29389585 RGD:25823193 NCBI chr19:35,295,633...35,310,528
Ensembl chr19:35,295,573...35,310,557 		JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) IDA
IMP		 RGD PMID:19635791 PMID:19635791 RGD:7242950, RGD:7242950 NCBI chr15:29,027,891...29,036,729
Ensembl chr15:29,027,894...29,037,283 		JBrowse link
regulation of NAD metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone involved_in ISS
ISO		 GO_REF:0000024
(PMID:28991266)		 UniProt
RGD		 PMID:28991266 GO_REF:0000024 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12289
      purine-containing compound metabolic process 593
        purine nucleotide metabolic process 559
          NAD metabolic process 56
            NAD biosynthetic process + 15
            NAD catabolic process + 19
            NADH metabolic process + 34
            negative regulation of NAD metabolic process + 0
            positive regulation of NAD metabolic process + 0
            regulation of NAD metabolic process + 1
Path 2
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12289
      primary metabolic process 10923
        nucleobase-containing compound metabolic process 5735
          nucleobase-containing small molecule metabolic process 701
            nucleoside phosphate metabolic process 626
              nucleotide metabolic process 616
                pyridine nucleotide metabolic process 215
                  nicotinamide nucleotide metabolic process 215
                    NAD metabolic process 56
                      NAD biosynthetic process + 15
                      NAD catabolic process + 19
                      NADH metabolic process + 34
                      negative regulation of NAD metabolic process + 0
                      positive regulation of NAD metabolic process + 0
                      regulation of NAD metabolic process + 1
paths to the root