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ONTOLOGY REPORT - ANNOTATIONS


Term:pentose metabolic process
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Accession:GO:0019321 term browser browse the term
Definition:The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
Synonyms:exact_synonym: pentose metabolism



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pentose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fggy FGGY carbohydrate kinase domain containing involved_in ISO (PMID:27909055) RGD PMID:27909055 NCBI chr 5:110,398,866...110,786,019
Ensembl chr 5:110,398,863...110,786,017
JBrowse link
D-ribose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt5 nudix hydrolase 5 involved_in ISO
IEA
ISS
(PMID:21389046)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21389046 GO_REF:0000024 GO_REF:0000107 NCBI chr17:72,435,690...72,459,008
Ensembl chr17:72,435,697...72,459,001
JBrowse link
G Rbks ribokinase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 6:24,747,651...24,824,290
Ensembl chr 6:24,747,293...24,824,290
JBrowse link
D-ribose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpia ribose 5-phosphate isomerase A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:102,723,712...102,749,374
Ensembl chr 4:102,723,712...102,749,355
JBrowse link
D-xylose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhdh dihydrodiol dehydrogenase involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:55366|PMID:6753830)
RGD PMID:6753830 PMID:21873635 MGI:55366, RGD:13792537 NCBI chr 1:95,954,361...95,965,262
Ensembl chr 1:95,953,092...95,965,197
JBrowse link
D-xylose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcxr dicarbonyl and L-xylulose reductase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:106,006,404...106,008,294 JBrowse link
G Uxs1 UDP-glucuronate decarboxylase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:653,740...731,121
Ensembl chr 9:653,659...756,334
JBrowse link
G Xylb xylulokinase involved_in IEA GO_REF:0000043
GO_REF:0000104
UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 8:119,093,466...119,128,858
Ensembl chr 8:119,096,029...119,128,848
JBrowse link
L-arabinose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otog otogelin involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:96,746,336...96,815,416
Ensembl chr 1:96,746,336...96,815,415
JBrowse link
G Otogl otogelin-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:43,065,800...43,211,400
Ensembl chr 7:43,067,644...43,223,592
JBrowse link
pentose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G G6pd glucose-6-phosphate dehydrogenase involved_in
acts_upstream_of_or_within
ISO (PMID:5643703)
MGI:2182739 (MGI:1097071|PMID:9330624), (MGI:1202104|PMID:9539108), (MGI:1261671|PMID:9627357), (MGI:3607389|PMID:14757696), (MGI:3694178|PMID:15998684), (MGI:49164|PMID:1953691), (MGI:54902|PMID:7439685), (MGI:61105|PMID:8491670)
RGD PMID:1953691 PMID:5643703 PMID:7439685 PMID:8491670 PMID:9330624 More... MGI:1097071 MGI:1202104 MGI:1261671 MGI:3607389 MGI:3694178 MGI:49164 MGI:54902 MGI:61105 NCBI chr  X:152,201,081...152,220,863
Ensembl chr  X:152,201,098...152,220,801
JBrowse link
G Pgd phosphogluconate dehydrogenase acts_upstream_of_or_within ISO (MGI:61105|PMID:8491670) RGD PMID:8491670 MGI:61105 NCBI chr 5:159,582,746...159,598,945 JBrowse link
pentose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpe ribulose-5-phosphate-3-epimerase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:68,191,027...68,211,295
Ensembl chr 9:68,191,292...68,211,591
JBrowse link
xylulose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcxr dicarbonyl and L-xylulose reductase involved_in
acts_upstream_of_or_within
IBA
ISO
IDA
PMID:21873635
(MGI:2179664|PMID:11882650)
(PMID:11882650)
RGD PMID:11882650 PMID:21873635 PMID:11882650 MGI:2179664, RGD:13792537, RGD:632676 NCBI chr10:106,006,404...106,008,294 JBrowse link
G LOC688320 similar to Lung carbonyl reductase [NADPH] (NADPH-dependent carbonyl reductase) (LCR) (Adipocyte P27 protein) (AP27) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:106,008,535...106,012,838
Ensembl chr10:105,991,589...106,013,001
JBrowse link
G LOC688321 similar to Lung carbonyl reductase [NADPH] (NADPH-dependent carbonyl reductase) (LCR) (Adipocyte P27 protein) (AP27) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:106,033,250...106,036,852
Ensembl chr10:106,033,255...106,036,919
JBrowse link
G Xylb xylulokinase involved_in IEA
IBA
ISS
ISO
GO_REF:0000104
PMID:21873635
GO_REF:0000024
(PMID:23179721)
UniProt
RGD
PMID:23179721 PMID:21873635 GO_REF:0000024 GO_REF:0000104, RGD:13792537 NCBI chr 8:119,093,466...119,128,858
Ensembl chr 8:119,096,029...119,128,848
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19390
    metabolic process 11736
      small molecule metabolic process 1788
        monosaccharide metabolic process 279
          pentose metabolic process 15
            D-ribose metabolic process + 3
            D-xylose metabolic process + 4
            L-lyxose metabolic process 0
            arabinose metabolic process + 2
            pentose biosynthetic process + 2
            pentose catabolic process + 4
            xylulose metabolic process + 4
Path 2
Term Annotations click to browse term
  biological_process 19390
    metabolic process 11736
      primary metabolic process 10467
        carbohydrate metabolic process 624
          monosaccharide metabolic process 279
            pentose metabolic process 15
              D-ribose metabolic process + 3
              D-xylose metabolic process + 4
              L-lyxose metabolic process 0
              arabinose metabolic process + 2
              pentose biosynthetic process + 2
              pentose catabolic process + 4
              xylulose metabolic process + 4
paths to the root