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ONTOLOGY REPORT - ANNOTATIONS


Term:viral translation
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Accession:GO:0019081 term browser browse the term
Definition:A process by which viral mRNA is translated into viral protein, using the host cellular machinery.
Synonyms:exact_synonym: viral protein anabolism;   viral protein biosynthesis;   viral protein biosynthetic process;   viral protein formation;   viral protein synthesis


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viral translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:5700304|PMID:16601681)
UniProt
RGD
PMID:16601681 GO_REF:0000024 MGI:5700304 NCBI chr 3:110,159,624...110,245,382
Ensembl chr 3:110,159,708...110,249,217
JBrowse link
IRES-dependent viral translational initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csde1 cold shock domain containing E1 involved_in ISO (PMID:17947529) RGD PMID:17947529 NCBI chr 2:205,525,194...205,552,987
Ensembl chr 2:205,525,204...205,552,991
JBrowse link
G Denr density regulated reinitiation and release factor involved_in ISO (PMID:20713520) RGD PMID:20713520 NCBI chr12:38,095,717...38,117,758
Ensembl chr12:38,096,034...38,116,919
JBrowse link
G Eif2d eukaryotic translation initiation factor 2D involved_in ISO (PMID:20713520) RGD PMID:20713520 NCBI chr13:47,935,138...47,958,459
Ensembl chr13:47,935,163...47,954,090
JBrowse link
G Eif3a eukaryotic translation initiation factor 3, subunit A involved_in ISO (PMID:23766293), (PMID:24357634), (PMID:9573242) RGD PMID:9573242 PMID:23766293 PMID:24357634 NCBI chr 1:282,139,809...282,170,017
Ensembl chr 1:282,139,823...282,170,017
JBrowse link
G Eif3b eukaryotic translation initiation factor 3, subunit B involved_in ISO (PMID:9573242) RGD PMID:9573242 NCBI chr12:16,285,730...16,310,190
Ensembl chr12:16,285,733...16,310,190
JBrowse link
G Eif3d eukaryotic translation initiation factor 3, subunit D involved_in ISO (PMID:9573242) RGD PMID:9573242 NCBI chr 7:119,188,189...119,200,578
Ensembl chr 7:119,188,185...119,200,623
JBrowse link
G Eif3f eukaryotic translation initiation factor 3, subunit F involved_in ISO (PMID:9573242) RGD PMID:9573242 NCBI chr 1:173,532,826...173,541,806
Ensembl chr 1:173,532,803...173,541,847
JBrowse link
G Mcts1 MCTS1, re-initiation and release factor involved_in ISO (PMID:20713520) RGD PMID:20713520 NCBI chr  X:124,894,269...124,906,129
Ensembl chr  X:124,894,466...124,906,162
JBrowse link
G Pcbp2 poly(rC) binding protein 2 involved_in ISO (PMID:12414943) RGD PMID:12414943 NCBI chr 7:144,077,901...144,103,723
Ensembl chr 7:144,078,496...144,101,893
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 involved_in ISO (PMID:17947529), (PMID:21518806) RGD PMID:17947529 PMID:21518806 NCBI chr 7:12,663,965...12,673,723
Ensembl chr 7:12,663,965...12,673,718
JBrowse link
G Ssb small RNA binding exonuclease protection factor La involved_in ISO (PMID:12384597) RGD PMID:12384597 NCBI chr 3:56,092,425...56,102,008
Ensembl chr 3:56,092,501...56,102,001
JBrowse link
positive regulation of viral translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:16680162) RGD PMID:16680162 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
viral translational frameshifting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shfl shiftless antiviral inhibitor of ribosomal frameshifting involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
PMID:21873635
GO_REF:0000107
(PMID:30682371)
UniProt
Ensembl
RGD
PMID:30682371, PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 8:21,890,214...21,896,045
Ensembl chr 8:21,890,319...21,896,031
JBrowse link
viral translational termination-reinitiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif3a eukaryotic translation initiation factor 3, subunit A involved_in ISO (PMID:21347434) RGD PMID:21347434 NCBI chr 1:282,139,809...282,170,017
Ensembl chr 1:282,139,823...282,170,017
JBrowse link
G Eif3b eukaryotic translation initiation factor 3, subunit B involved_in ISO (PMID:21347434) RGD PMID:21347434 NCBI chr12:16,285,730...16,310,190
Ensembl chr12:16,285,733...16,310,190
JBrowse link
G Eif3d eukaryotic translation initiation factor 3, subunit D involved_in ISO (PMID:21347434) RGD PMID:21347434 NCBI chr 7:119,188,189...119,200,578
Ensembl chr 7:119,188,185...119,200,623
JBrowse link
G Eif3g eukaryotic translation initiation factor 3, subunit G involved_in ISO (PMID:21347434) RGD PMID:21347434 NCBI chr 8:21,911,632...21,915,664
Ensembl chr 8:21,911,625...21,915,716
JBrowse link
G Eif3l eukaryotic translation initiation factor 3, subunit L involved_in ISO (PMID:21347434) RGD PMID:21347434 NCBI chr 7:120,320,547...120,331,596
Ensembl chr 7:120,320,547...120,331,595
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19599
    viral process 346
      viral translation 16
        IRES-dependent viral translational initiation 11
        negative regulation of viral translation 0
        positive regulation of viral translation 1
        regulation of viral translation + 1
        ribosomal skipping 0
        viral translational frameshifting 1
        viral translational readthrough 0
        viral translational shunt 0
        viral translational termination-reinitiation 5
Path 2
Term Annotations click to browse term
  biological_process 19599
    viral process 346
      viral gene expression 72
        viral translation 16
          IRES-dependent viral translational initiation 11
          negative regulation of viral translation 0
          positive regulation of viral translation 1
          regulation of viral translation + 1
          ribosomal skipping 0
          viral translational frameshifting 1
          viral translational readthrough 0
          viral translational shunt 0
          viral translational termination-reinitiation 5
paths to the root