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ONTOLOGY REPORT - ANNOTATIONS


Term:viral life cycle
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Accession:GO:0019058 term browser browse the term
Definition:A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
Synonyms:narrow_synonym: viral assembly, maturation, egress, and release
 related_synonym: lytic viral life cycle;   viral infectious cycle;   viral replication
 alt_id: GO:0019067


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viral life cycle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Furin furin, paired basic amino acid cleaving enzyme involved_in ISO (PMID:8940009) BHF-UCL PMID:8940009 NCBI chrNW_004936483:16,136,099...16,147,945 JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (PMID:8940009)
(MGI:3799615|PMID:8940009)
BHF-UCL PMID:8940009 MGI:3799615 NCBI chrNW_004936503:11,466,955...11,896,887 JBrowse link
clathrin-dependent endocytosis of virus by host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Siglec1 sialic acid binding Ig like lectin 1 involved_in ISO (PMID:12857889) AgBase PMID:12857889 NCBI chrNW_004936485:14,979,838...14,999,047 JBrowse link
coreceptor-mediated virion attachment to host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nectin2 nectin cell adhesion molecule 2 involved_in ISO (PMID:12915581) BHF-UCL PMID:12915581 NCBI chrNW_004936706:1,470,910...1,498,986 JBrowse link
entry of viral genome into host nucleus through nuclear pore complex via importin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kpna2 karyopherin subunit alpha 2 acts_upstream_of_or_within ISO (MGI:5898166|PMID:28189564)
(PMID:28189564)
MGI PMID:28189564 MGI:5898166 NCBI chrNW_004936541:5,217,389...5,228,816 JBrowse link
G Kpna6 karyopherin subunit alpha 6 acts_upstream_of_or_within ISO (MGI:5898166|PMID:28189564)
(PMID:28189564)
MGI PMID:28189564 MGI:5898166 NCBI chrNW_004936474:15,168,344...15,229,864 JBrowse link
fusion of virus membrane with host endosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsl cathepsin L involved_in ISO (PMID:16081529), (PMID:18562523) UniProt PMID:16081529 PMID:18562523 NCBI chrNW_004936680:3,047,355...3,050,640 JBrowse link
fusion of virus membrane with host plasma membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsl cathepsin L involved_in ISO (PMID:32855215) UniProt PMID:32855215 NCBI chrNW_004936680:3,047,355...3,050,640 JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO (PMID:21501828) UniProt PMID:21501828 NCBI chrNW_004936472:27,116...57,158 JBrowse link
G Hyal2 hyaluronidase 2 involved_in ISO (PMID:11296287) UniProt PMID:11296287 NCBI chrNW_004936529:1,845,445...1,851,106 JBrowse link
G Nectin2 nectin cell adhesion molecule 2 involved_in ISO (PMID:12915581) BHF-UCL PMID:12915581 NCBI chrNW_004936706:1,470,910...1,498,986 JBrowse link
intracellular transport of virus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dync1i1 dynein cytoplasmic 1 intermediate chain 1 involved_in ISO (PMID:25540360) AgBase PMID:25540360 NCBI chrNW_004936585:4,232,428...4,496,878 JBrowse link
modulation by host of viral RNA genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxl2 F-box and leucine rich repeat protein 2 involved_in ISO (PMID:15893726) UniProt PMID:15893726 NCBI chrNW_004936473:23,567,251...23,659,708 JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in ISO (PMID:24514761) UniProt PMID:24514761 NCBI chrNW_004936513:1,290,038...1,327,850 JBrowse link
G Phb prohibitin involved_in ISO (MGI:6436975|PMID:29324904) UniProt PMID:29324904 MGI:6436975 NCBI chrNW_004936490:12,127,065...12,138,870 JBrowse link
G Vapb VAMP associated protein B and C involved_in ISO (PMID:19515777) AgBase PMID:19515777 NCBI chrNW_004936530:985,488...1,030,270 JBrowse link
negative regulation by host of viral genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl8 C-C motif chemokine ligand 8 involved_in ISO (PMID:20181935) ARUK-UCL PMID:20181935 NCBI chrNW_004936538:805,273...806,715 JBrowse link
G Ccnk cyclin K involved_in ISO (PMID:21555514) CACAO PMID:21555514 NCBI chrNW_004936604:3,283,996...3,316,516 JBrowse link
G Ddx3x DEAD-box helicase 3 X-linked involved_in ISO (PMID:24380861) AgBase PMID:24380861 NCBI chrNW_004936502:7,770,896...7,820,555 JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 involved_in ISO (MGI:5700304|PMID:16601681) UniProt PMID:16601681 MGI:5700304 NCBI chrNW_004936471:3,423,792...3,527,089 JBrowse link
G LOC101954488 CEA cell adhesion molecule 1 acts_upstream_of_or_within ISO (MGI:55926|PMID:6327825) MGI PMID:6327825 MGI:55926 NCBI chrNW_004936706:37,480...53,306 JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:25244949) AgBase PMID:25244949 NCBI chrNW_004936489:12,118,538...12,913,664 JBrowse link
G Vapa VAMP associated protein A involved_in ISO (PMID:19515777) AgBase PMID:19515777 NCBI chrNW_004936626:1,550,305...1,585,783 JBrowse link
G Vapb VAMP associated protein B and C involved_in ISO (PMID:19515777) AgBase PMID:19515777 NCBI chrNW_004936530:985,488...1,030,270 JBrowse link
G Zbed1 zinc finger BED-type containing 1 involved_in ISO (PMID:25210186) UniProt PMID:25210186 NCBI chrNW_004936644:3,619,764...3,622,806 JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in ISO (PMID:23355615) UniProt PMID:23355615 NCBI chrNW_004936474:19,714,145...19,722,512 JBrowse link
negative regulation by host of viral release from host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vapb VAMP associated protein B and C involved_in ISO (PMID:19515777) AgBase PMID:19515777 NCBI chrNW_004936530:985,488...1,030,270 JBrowse link
negative regulation of intracellular transport of viral material term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bst2 bone marrow stromal cell antigen 2 involved_in ISO (PMID:19036818), (PMID:20686043), (PMID:20943977) UniProt PMID:19036818 PMID:20686043 PMID:20943977
G Ccdc194 coiled-coil domain containing 194 involved_in ISO (MGI:5437405|PMID:22284121), (MGI:5448513|PMID:21919738)
(MGI:5437427|PMID:20686043)
UniProt PMID:20686043 PMID:21919738 PMID:22284121 MGI:5437405 MGI:5437427 MGI:5448513 NCBI chrNW_004936596:3,492,733...3,501,347 JBrowse link
G Trim15 tripartite motif containing 15 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004936723:869,019...880,200 JBrowse link
negative regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmga2 high mobility group AT-hook 2 involved_in ISO (PMID:17005673) UniProt PMID:17005673 NCBI chrNW_004936545:3,944,419...3,958,289 JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K involved_in ISO (PMID:18774950) UniProt PMID:18774950 NCBI chrNW_004936538:7,641,485...7,662,033 JBrowse link
G Morc2 MORC family CW-type zinc finger 2 involved_in ISO (PMID:29211708)
(MGI:6271895|PMID:29728365)
UniProt PMID:29211708 PMID:29728365 MGI:6271895 NCBI chrNW_004936755:133,315...171,507 JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in ISO (PMID:29211708) UniProt PMID:29211708 NCBI chrNW_004936720:1,972,063...2,025,283 JBrowse link
G Resf1 retroelement silencing factor 1 involved_in ISO (MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:6271895 NCBI chrNW_004936607:4,247,824...4,274,410 JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 involved_in ISO (MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365) UniProt PMID:20164836 PMID:29728365 MGI:5440670 MGI:6271895 NCBI chrNW_004936580:1,146,286...1,192,842 JBrowse link
G Tasor transcription activation suppressor involved_in ISO (PMID:29211708) UniProt PMID:29211708 NCBI chrNW_004936473:7,053,797...7,098,608 JBrowse link
G Trim28 tripartite motif containing 28 acts_upstream_of_or_within
involved_in
ISO (MGI:3842857|PMID:19270682)
(MGI:5440670|PMID:20164836)
MGI
UniProt
PMID:19270682 PMID:20164836 MGI:3842857 MGI:5440670 NCBI chrNW_004937062:126,832...132,938 JBrowse link
negative regulation of viral entry into host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apcs amyloid P component, serum involved_in ISO (PMID:23544079) BHF-UCL PMID:23544079 NCBI chrNW_004936740:979,007...987,312 JBrowse link
G Cd74 CD74 molecule involved_in ISO (PMID:32855215) UniProt PMID:32855215 NCBI chrNW_004936504:4,522,576...4,532,289 JBrowse link
G Ciita class II major histocompatibility complex transactivator involved_in ISO (PMID:32855215) UniProt PMID:32855215 NCBI chrNW_004936530:9,033,510...9,073,341 JBrowse link
G Fcn3 ficolin 3 involved_in ISO (PMID:22851708) UniProt PMID:22851708 NCBI chrNW_004936474:11,680,166...11,685,214 JBrowse link
G Gsn gelsolin involved_in ISO (PMID:23575248) UniProt PMID:23575248 NCBI chrNW_004936487:9,749,755...9,802,787 JBrowse link
G Ly6e lymphocyte antigen 6 family member E involved_in ISO (PMID:32641482), (PMID:32704094)
(MGI:6448667|PMID:32704094)
UniProt PMID:32641482 PMID:32704094 MGI:6448667 NCBI chrNW_004936470:8,879,217...8,880,777 JBrowse link
G Mid2 midline 2 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004936499:6,833,328...6,926,531 JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease ISO RGD PMID:22850678 RGD:8693392 NCBI chrNW_004936674:466,495...528,072 JBrowse link
G Nbn nibrin ISO RGD PMID:22850678 RGD:8693392 NCBI chrNW_004936544:3,773,828...3,812,673 JBrowse link
G Ptx3 pentraxin 3 involved_in ISO (PMID:23544079) BHF-UCL PMID:23544079 NCBI chrNW_004936519:4,303,549...4,309,143 JBrowse link
G Rad50 RAD50 double strand break repair protein ISO RGD PMID:22850678 RGD:8693392 NCBI chrNW_004936647:2,546,100...2,637,524 JBrowse link
G Snx3 sorting nexin 3 involved_in ISO (PMID:18767904) UniProt PMID:18767904 NCBI chrNW_004936564:4,472,171...4,520,732 JBrowse link
G Trim10 tripartite motif containing 10 involved_in ISO (MGI:5545996|PMID:18248090) UniProt PMID:18248090 MGI:5545996 NCBI chrNW_004936723:882,960...890,740 JBrowse link
G Trim11 tripartite motif containing 11 involved_in ISO (PMID:18248090)
(MGI:5545996|PMID:18248090)
UniProt PMID:18248090 MGI:5545996 NCBI chrNW_004937135:11,350...21,235 JBrowse link
G Trim25 tripartite motif containing 25 involved_in ISO (MGI:5545996|PMID:18248090) UniProt PMID:18248090 MGI:5545996 NCBI chrNW_004936490:5,979,320...5,997,632 JBrowse link
G Trim26 tripartite motif containing 26 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004936723:827,847...859,860 JBrowse link
G Trim31 tripartite motif containing 31 involved_in ISO (PMID:18248090)
(MGI:5545996|PMID:18248090)
UniProt PMID:18248090 MGI:5545996 NCBI chrNW_004936723:934,808...945,279 JBrowse link
G Trim56 tripartite motif containing 56 involved_in ISO (MGI:5545996|PMID:18248090) UniProt PMID:18248090 MGI:5545996 NCBI chrNW_004936543:1,007,253...1,016,374 JBrowse link
G Trim59 tripartite motif containing 59 involved_in ISO (MGI:5545996|PMID:18248090) UniProt PMID:18248090 MGI:5545996 NCBI chrNW_004936708:396,688...410,720 JBrowse link
G Trim8 tripartite motif containing 8 involved_in ISO (MGI:5545996|PMID:18248090) UniProt PMID:18248090 MGI:5545996 NCBI chrNW_004936600:3,244,888...3,259,042 JBrowse link
negative regulation of viral genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase RNA specific acts_upstream_of_or_within ISO (MGI:4939544|PMID:21173229) MGI PMID:21173229 MGI:4939544 NCBI chrNW_004936580:4,183,016...4,208,341 JBrowse link
G Banf1 BAF nuclear assembly factor 1 involved_in ISO (PMID:18005698) UniProt PMID:18005698 NCBI chrNW_004936599:3,553,190...3,555,167 JBrowse link
G Bst2 bone marrow stromal cell antigen 2 involved_in ISO (PMID:20943977) UniProt PMID:20943977
G Ccdc194 coiled-coil domain containing 194 involved_in ISO (MGI:5437405|PMID:22284121), (MGI:5448513|PMID:21919738) UniProt PMID:21919738 PMID:22284121 MGI:5437405 MGI:5448513 NCBI chrNW_004936596:3,492,733...3,501,347 JBrowse link
G Ccl5 C-C motif chemokine ligand 5 involved_in ISO (PMID:10490959) BHF-UCL PMID:10490959 NCBI chrNW_004936490:253,279...259,947 JBrowse link
G Eif2ak2 eukaryotic translation initiation factor 2 alpha kinase 2 involved_in ISO (PMID:19189853), (PMID:19840259)
(MGI:5487533|PMID:20038207)
UniProt PMID:19189853 PMID:19840259 PMID:20038207 MGI:5487533 NCBI chrNW_004936663:1,127,047...1,157,263 JBrowse link
G Fam111a FAM111 trypsin like peptidase A involved_in ISO (PMID:23093934) UniProt PMID:23093934 NCBI chrNW_004936581:3,482,649...3,488,331 JBrowse link
G Ifih1 interferon induced with helicase C domain 1 involved_in ISO (PMID:33727702) UniProt PMID:33727702 NCBI chrNW_004936469:16,721,306...16,778,249 JBrowse link
G Ifit5 interferon induced protein with tetratricopeptide repeats 5 involved_in ISO (PMID:23774268) UniProt PMID:23774268 NCBI chrNW_004936601:4,785,837...4,791,893 JBrowse link
G Ifnb1 interferon beta 1 involved_in ISO (PMID:19008854) BHF-UCL PMID:19008854 NCBI chrNW_004936652:2,736,270...2,736,833 JBrowse link
G Ilf3 interleukin enhancer binding factor 3 involved_in ISO (MGI:4867319|PMID:21123651) UniProt PMID:21123651 MGI:4867319 NCBI chrNW_004936659:903,690...940,024 JBrowse link
G Isg15 ISG15 ubiquitin like modifier involved_in ISO (PMID:19357168)
(PMID:33727702)
UniProt PMID:19357168 PMID:33727702 NCBI chrNW_004936737:2,043,383...2,044,761 JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 involved_in ISO (PMID:21036379) UniProt PMID:21036379 NCBI chrNW_004936483:14,616,796...14,635,290 JBrowse link
G LOC101960095 antileukoproteinase involved_in ISO (PMID:19333378) UniProt PMID:19333378 NCBI chrNW_004936514:7,618,382...7,620,790 JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:25193851) AgBase PMID:25193851 NCBI chrNW_004936596:344,287...373,788 JBrowse link
G Mavs mitochondrial antiviral signaling protein involved_in ISO (PMID:20451243)
(MGI:4881394|PMID:20451243)
UniProt PMID:20451243 MGI:4881394 NCBI chrNW_004936485:14,842,778...14,859,163 JBrowse link
G N4bp1 NEDD4 binding protein 1 involved_in ISO (PMID:31133753) UniProt PMID:31133753 NCBI chrNW_004936475:1,743,205...1,765,466 JBrowse link
G Oas3 2'-5'-oligoadenylate synthetase 3 involved_in ISO (PMID:19056102), (PMID:19923450), (PMID:23196181) UniProt PMID:19056102 PMID:19923450 PMID:23196181 NCBI chrNW_004936668:2,917,978...2,965,336 JBrowse link
G Oasl 2'-5'-oligoadenylate synthetase like involved_in ISO (PMID:18931074), (PMID:20074559) UniProt PMID:18931074 PMID:20074559 NCBI chrNW_004936668:43,960...50,246 JBrowse link
G Plscr1 phospholipid scramblase 1 involved_in ISO (PMID:15308695)
(MGI:5284800|PMID:15308695)
UniProt PMID:15308695 MGI:5284800 NCBI chrNW_004936519:8,759,702...8,790,823 JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:19264593) BHF-UCL PMID:19264593 NCBI chrNW_004936628:4,185,712...4,240,680 JBrowse link
G Rnasel ribonuclease L involved_in ISO (PMID:19923450), (PMID:23196181) UniProt PMID:19923450 PMID:23196181 NCBI chrNW_004936481:7,165,400...7,177,342 JBrowse link
G Rsad2 radical S-adenosyl methionine domain containing 2 involved_in ISO (PMID:21957124)
(MGI:5431072|PMID:21880757)
UniProt PMID:21880757 PMID:21957124 MGI:5431072 NCBI chrNW_004936532:3,921,824...3,936,027 JBrowse link
G Shfl shiftless antiviral inhibitor of ribosomal frameshifting involved_in ISO (PMID:26735137) UniProt PMID:26735137 NCBI chrNW_004936659:480,934...491,926 JBrowse link
G Srpk1 SRSF protein kinase 1 involved_in ISO (PMID:12417631) BHF-UCL PMID:12417631 NCBI chrNW_004936476:23,407,226...23,476,203 JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in ISO (PMID:12417631) BHF-UCL PMID:12417631 NCBI chrNW_004936479:18,541,167...18,675,039 JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:10490959) BHF-UCL PMID:10490959 NCBI chrNW_004936727:1,936,066...1,937,766 JBrowse link
G Trim6 tripartite motif containing 6 involved_in ISO (PMID:24882218)
(MGI:5645191|PMID:24882218)
UniProt PMID:24882218 MGI:5645191 NCBI chrNW_004937097:23,695...31,673 JBrowse link
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 involved_in ISO (PMID:21102435), (PMID:21876179) UniProt PMID:21102435 PMID:21876179 RGD:8554819 NCBI chrNW_004936592:3,321,564...3,379,015 JBrowse link
negative regulation of viral life cycle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 involved_in ISO (PMID:25086213) AgBase PMID:25086213 NCBI chrNW_004936492:5,042,353...5,049,216 JBrowse link
G Ppia peptidylprolyl isomerase A involved_in ISO (PMID:19207730), (PMID:22347431) UniProt PMID:19207730 PMID:22347431 NCBI chrNW_004936478:19,669,727...19,673,355 JBrowse link
negative regulation of viral release from host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:16740483) UniProt PMID:16740483 NCBI chrNW_004936712:1,023,994...1,044,727 JBrowse link
G Mid2 midline 2 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004936499:6,833,328...6,926,531 JBrowse link
G Pml PML nuclear body scaffold involved_in ISO (PMID:18248090)
(MGI:5545996|PMID:18248090)
UniProt PMID:18248090 MGI:5545996 NCBI chrNW_004936471:33,135,186...33,173,218 JBrowse link
G Trim11 tripartite motif containing 11 involved_in ISO (PMID:18248090)
(MGI:5545996|PMID:18248090)
UniProt PMID:18248090 MGI:5545996 NCBI chrNW_004937135:11,350...21,235 JBrowse link
G Trim13 tripartite motif containing 13 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004936565:2,976,681...2,989,036 JBrowse link
G Trim15 tripartite motif containing 15 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004936723:869,019...880,200 JBrowse link
G Trim21 tripartite motif containing 21 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004936498:690,481...697,305 JBrowse link
G Trim25 tripartite motif containing 25 involved_in ISO (MGI:5545996|PMID:18248090) UniProt PMID:18248090 MGI:5545996 NCBI chrNW_004936490:5,979,320...5,997,632 JBrowse link
G Trim26 tripartite motif containing 26 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004936723:827,847...859,860 JBrowse link
G Trim27 tripartite motif containing 27 involved_in ISO (MGI:5545996|PMID:18248090) UniProt PMID:18248090 MGI:5545996 NCBI chrNW_004936914:245,348...263,060 JBrowse link
G Trim28 tripartite motif containing 28 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004937062:126,832...132,938 JBrowse link
G Trim32 tripartite motif containing 32 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004936487:5,606,690...5,619,856 JBrowse link
G Trim35 tripartite motif containing 35 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004936675:181,076...197,954 JBrowse link
G Trim56 tripartite motif containing 56 involved_in ISO (MGI:5545996|PMID:18248090) UniProt PMID:18248090 MGI:5545996 NCBI chrNW_004936543:1,007,253...1,016,374 JBrowse link
G Trim8 tripartite motif containing 8 involved_in ISO (PMID:18248090)
(MGI:5545996|PMID:18248090)
UniProt PMID:18248090 MGI:5545996 NCBI chrNW_004936600:3,244,888...3,259,042 JBrowse link
negative stranded viral RNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (MGI:5552992|PMID:24550300) MGI PMID:24550300 MGI:5552992 NCBI chrNW_004936525:3,973,574...4,010,442 JBrowse link
G Atg16l2 autophagy related 16 like 2 acts_upstream_of_or_within ISO (MGI:5552992|PMID:24550300) MGI PMID:24550300 MGI:5552992 NCBI chrNW_004936498:2,070,985...2,084,141 JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO (MGI:5552992|PMID:24550300) MGI PMID:24550300 MGI:5552992 NCBI chrNW_004936564:2,759,085...2,885,394 JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (MGI:5552992|PMID:24550300) MGI PMID:24550300 MGI:5552992 NCBI chrNW_004936602:1,938,720...2,179,239 JBrowse link
positive regulation by host of viral genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in ISO (MGI:5787727|PMID:26581985) AgBase PMID:26581985 MGI:5787727 NCBI chrNW_004936542:7,577,192...7,581,598 JBrowse link
G Nucks1 nuclear casein kinase and cyclin dependent kinase substrate 1 involved_in ISO (PMID:25116364) ParkinsonsUK-UCL PMID:25116364 NCBI chrNW_004936557:6,713,065...6,728,011 JBrowse link
G Ppib peptidylprolyl isomerase B involved_in ISO (PMID:15989969) AgBase PMID:15989969 NCBI chrNW_004936471:24,633,769...24,640,246 JBrowse link
G Stom stomatin involved_in ISO (MGI:5616479|PMID:25262680) AgBase PMID:25262680 MGI:5616479 NCBI chrNW_004936487:9,808,586...9,837,506 JBrowse link
G Tbc1d20 TBC1 domain family member 20 involved_in ISO (PMID:17686842) AgBase PMID:17686842 NCBI chrNW_004936485:18,034,776...18,055,741 JBrowse link
G Vapa VAMP associated protein A involved_in ISO (PMID:19515777) AgBase PMID:19515777 NCBI chrNW_004936626:1,550,305...1,585,783 JBrowse link
G Vapb VAMP associated protein B and C involved_in ISO (PMID:19515777) AgBase PMID:19515777 NCBI chrNW_004936530:985,488...1,030,270 JBrowse link
G Ythdc2 YTH domain containing 2 involved_in ISO (PMID:21559518) AgBase PMID:21559518 NCBI chrNW_004936597:5,406,866...5,481,155 JBrowse link
positive regulation by host of viral release from host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav2 caveolin 2 involved_in ISO (PMID:25556234) AgBase PMID:25556234 NCBI chrNW_004936589:2,553,932...2,561,186 JBrowse link
G Pc pyruvate carboxylase involved_in ISO (PMID:23861867) AgBase PMID:23861867 NCBI chrNW_004936599:2,677,770...2,793,033 JBrowse link
G Vapa VAMP associated protein A involved_in ISO (PMID:19515777) AgBase PMID:19515777 NCBI chrNW_004936626:1,550,305...1,585,783 JBrowse link
G Vapb VAMP associated protein B and C involved_in ISO (PMID:19515777) AgBase PMID:19515777 NCBI chrNW_004936530:985,488...1,030,270 JBrowse link
G Znf502 zinc finger protein 502 involved_in ISO (PMID:25556234) AgBase PMID:25556234
positive regulation of intracellular transport of viral material term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmr1 FMRP translational regulator 1 involved_in ISO (PMID:24514761) UniProt PMID:24514761 NCBI chrNW_004936513:1,290,038...1,327,850 JBrowse link
positive regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Top2a DNA topoisomerase II alpha involved_in ISO (PMID:16712776) UniProt PMID:16712776 NCBI chrNW_004936490:15,441,463...15,465,692 JBrowse link
G Top2b DNA topoisomerase II beta involved_in ISO (PMID:16712776) UniProt PMID:16712776 NCBI chrNW_004936473:17,146,576...17,189,589 JBrowse link
positive regulation of viral budding via host ESCRT complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tsg101 tumor susceptibility 101 involved_in ISO (PMID:11595185), (PMID:15218037) UniProt PMID:11595185 PMID:15218037 NCBI chrNW_004936590:61,352...62,037 JBrowse link
G Vps37b VPS37B subunit of ESCRT-I involved_in ISO (PMID:15218037) UniProt PMID:15218037 NCBI chrNW_004936558:1,745,041...1,776,562 JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in ISO (PMID:24878737) UniProt PMID:24878737 NCBI chrNW_004936475:19,432,311...19,444,223 JBrowse link
positive regulation of viral entry into host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bsg basigin (Ok blood group) involved_in ISO (PMID:29739904)
(PMID:11353871), (PMID:15688292)
UniProt PMID:11353871 PMID:15688292 PMID:29739904 NCBI chrNW_004936588:181,688...189,795 JBrowse link
G Cd4 CD4 molecule involved_in ISO (PMID:24942581) CAFA PMID:24942581 NCBI chrNW_004936709:997,776...1,022,791 JBrowse link
G Cd74 CD74 molecule involved_in ISO (PMID:24942581) CAFA PMID:24942581 NCBI chrNW_004936504:4,522,576...4,532,289 JBrowse link
G Lgals1 galectin 1 involved_in ISO (PMID:21670307) UniProt PMID:21670307 NCBI chrNW_004936492:3,407,704...3,411,197 JBrowse link
G Lgals9 galectin 9 involved_in ISO (PMID:21670307) UniProt PMID:21670307 NCBI chrNW_004936538:4,034,467...4,050,240 JBrowse link
G Nectin1 nectin cell adhesion molecule 1 involved_in ISO (PMID:11277703) AgBase PMID:11277703 NCBI chrNW_004936542:4,501,081...4,602,338 JBrowse link
G P4hb prolyl 4-hydroxylase subunit beta involved_in ISO (PMID:21670307) UniProt PMID:21670307 NCBI chrNW_004936594:5,368,199...5,379,215 JBrowse link
G Tmprss2 transmembrane serine protease 2 involved_in ISO (PMID:21068237), (PMID:24227843), (PMID:32404436) UniProt PMID:21068237 PMID:24227843 PMID:32404436 NCBI chrNW_004936500:2,199,877...2,222,174 JBrowse link
G Tmprss4 transmembrane serine protease 4 involved_in ISO (PMID:32404436) UniProt PMID:32404436 NCBI chrNW_004936542:3,180,260...3,216,208 JBrowse link
G Trim11 tripartite motif containing 11 involved_in ISO (PMID:18248090)
(MGI:5545996|PMID:18248090)
UniProt PMID:18248090 MGI:5545996 NCBI chrNW_004937135:11,350...21,235 JBrowse link
G Trim21 tripartite motif containing 21 involved_in ISO (MGI:5545996|PMID:18248090) UniProt PMID:18248090 MGI:5545996 NCBI chrNW_004936498:690,481...697,305 JBrowse link
G Trim38 tripartite motif containing 38 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004936671:1,841,722...1,853,804 JBrowse link
positive regulation of viral genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase RNA specific involved_in ISO (PMID:18362360)
(MGI:5447606|PMID:18362360)
(PMID:19651874)
UniProt PMID:18362360 PMID:19651874 MGI:5447606 NCBI chrNW_004936580:4,183,016...4,208,341 JBrowse link
G Adarb1 adenosine deaminase RNA specific B1 involved_in ISO (PMID:21289159) UniProt PMID:21289159 NCBI chrNW_004936778:1,056,259...1,137,772 JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 involved_in ISO (PMID:23386060) UniProt PMID:23386060 NCBI chrNW_004936573:6,288,397...6,305,984 JBrowse link
G Ddb1 damage specific DNA binding protein 1 involved_in ISO (PMID:23137809) AgBase PMID:23137809 NCBI chrNW_004936581:1,710,382...1,742,598 JBrowse link
G Ddx3x DEAD-box helicase 3 X-linked involved_in ISO (PMID:20862261) AgBase PMID:20862261 NCBI chrNW_004936502:7,770,896...7,820,555 JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 (inactive) involved_in ISO (PMID:26567527) AgBase PMID:26567527 NCBI chrNW_004936543:2,638,189...2,646,589 JBrowse link
G Hacd3 3-hydroxyacyl-CoA dehydratase 3 involved_in ISO (PMID:18160438) AgBase PMID:18160438 NCBI chrNW_004936471:25,796,666...25,829,278 JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator involved_in ISO (PMID:26735137) UniProt PMID:26735137 NCBI chrNW_004936515:8,039,887...8,125,006 JBrowse link
G Notch1 notch receptor 1 involved_in ISO (MGI:5693363|PMID:21191019) AgBase PMID:21191019 MGI:5693363 NCBI chrNW_004936669:1,292,016...1,334,061 JBrowse link
G Nr5a2 nuclear receptor subfamily 5 group A member 2 involved_in ISO (PMID:19264593) BHF-UCL PMID:19264593 NCBI chrNW_004936567:4,084,161...4,194,858 JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 involved_in ISO (PMID:26735137) UniProt PMID:26735137 NCBI chrNW_004936470:42,628,890...42,670,311 JBrowse link
G Pde12 phosphodiesterase 12 involved_in ISO (PMID:15231837) UniProt PMID:15231837 NCBI chrNW_004936473:7,894,026...7,897,844 JBrowse link
G Pkn2 protein kinase N2 involved_in ISO (PMID:15364941) AgBase PMID:15364941 NCBI chrNW_004936732:199,208...315,094 JBrowse link
G Ppara peroxisome proliferator activated receptor alpha acts_upstream_of_or_within ISO (PMID:22479552) ARUK-UCL PMID:22479552 NCBI chrNW_004936629:3,672,445...3,725,645 JBrowse link
G Ppia peptidylprolyl isomerase A involved_in ISO (PMID:19932913) UniProt PMID:19932913 NCBI chrNW_004936478:19,669,727...19,673,355 JBrowse link
G Ppid peptidylprolyl isomerase D involved_in ISO (PMID:19932913) UniProt PMID:19932913 NCBI chrNW_004936576:5,165,815...5,179,928 JBrowse link
G Ppie peptidylprolyl isomerase E involved_in ISO (PMID:19932913) UniProt PMID:19932913 NCBI chrNW_004936474:21,602,555...21,616,857 JBrowse link
G Ppih peptidylprolyl isomerase H involved_in ISO (PMID:19932913) UniProt PMID:19932913 NCBI chrNW_004936474:24,003,963...24,024,885 JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in ISO (PMID:20614012) UniProt PMID:20614012 NCBI chrNW_004936659:2,001,356...2,007,520 JBrowse link
G Srpk1 SRSF protein kinase 1 involved_in ISO (PMID:20498328) BHF-UCL PMID:20498328 NCBI chrNW_004936476:23,407,226...23,476,203 JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in ISO (PMID:20498328) BHF-UCL PMID:20498328 NCBI chrNW_004936479:18,541,167...18,675,039 JBrowse link
G Stau1 staufen double-stranded RNA binding protein 1 involved_in ISO (PMID:23907398) AgBase PMID:23907398 NCBI chrNW_004936514:5,058,682...5,103,493 JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISO (PMID:11641396) UniProt PMID:11641396 NCBI chrNW_004936512:10,774,793...10,780,041 JBrowse link
G Tmem39a transmembrane protein 39A involved_in ISO (PMID:31849860) UniProt PMID:31849860 NCBI chrNW_004936536:6,376,539...6,406,314 JBrowse link
G Trim38 tripartite motif containing 38 acts_upstream_of_or_within ISO (MGI:5441682|PMID:22539786) MGI PMID:22539786 MGI:5441682 NCBI chrNW_004936671:1,841,722...1,853,804 JBrowse link
G Vapb VAMP associated protein B and C involved_in ISO (PMID:16227268) UniProt PMID:16227268 NCBI chrNW_004936530:985,488...1,030,270 JBrowse link
positive regulation of viral life cycle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 involved_in ISO (PMID:25593157) AgBase PMID:25593157 NCBI chrNW_004936471:21,274,112...21,329,286 JBrowse link
G Axl AXL receptor tyrosine kinase involved_in ISO (PMID:22673088) FlyBase PMID:22673088 NCBI chrNW_004936661:3,658,140...3,687,290 JBrowse link
G Clec4g C-type lectin domain family 4 member G involved_in ISO (PMID:22673088) FlyBase PMID:22673088 NCBI chrNW_004936588:4,737,278...4,740,750 JBrowse link
G Kpna2 karyopherin subunit alpha 2 acts_upstream_of_or_within ISO (MGI:5898166|PMID:28189564)
(PMID:28189564)
MGI PMID:28189564 MGI:5898166 NCBI chrNW_004936541:5,217,389...5,228,816 JBrowse link
G Kpna6 karyopherin subunit alpha 6 acts_upstream_of_or_within ISO (MGI:5898166|PMID:28189564)
(PMID:28189564)
MGI PMID:28189564 MGI:5898166 NCBI chrNW_004936474:15,168,344...15,229,864 JBrowse link
G Tyro3 TYRO3 protein tyrosine kinase involved_in ISO (PMID:22673088) FlyBase PMID:22673088 NCBI chrNW_004936471:4,893,185...4,910,779 JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in ISO (PMID:11595185) UniProt PMID:11595185 NCBI chrNW_004936475:19,432,311...19,444,223 JBrowse link
positive regulation of viral release from host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:23051622) UniProt PMID:23051622 NCBI chrNW_004937062:133,361...136,329 JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO (PMID:23051622) UniProt PMID:23051622 NCBI chrNW_004936610:2,282,925...2,320,554 JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:23051622) UniProt PMID:23051622 NCBI chrNW_004936712:1,023,994...1,044,727 JBrowse link
G Ddb1 damage specific DNA binding protein 1 involved_in ISO (PMID:23137809) AgBase PMID:23137809 NCBI chrNW_004936581:1,710,382...1,742,598 JBrowse link
G Tsg101 tumor susceptibility 101 involved_in ISO (PMID:11595185), (PMID:15218037) UniProt PMID:11595185 PMID:15218037 NCBI chrNW_004936590:61,352...62,037 JBrowse link
G Vps37b VPS37B subunit of ESCRT-I involved_in ISO (PMID:15218037) UniProt PMID:15218037 NCBI chrNW_004936558:1,745,041...1,776,562 JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in ISO (PMID:11595185) UniProt PMID:11595185 NCBI chrNW_004936475:19,432,311...19,444,223 JBrowse link
receptor-mediated endocytosis of virus by host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav1 caveolin 1 involved_in ISO (PMID:21047970) CACAO PMID:21047970 NCBI chrNW_004936589:2,504,235...2,536,778 JBrowse link
G Cav2 caveolin 2 involved_in ISO (PMID:21047970) CACAO PMID:21047970 NCBI chrNW_004936589:2,553,932...2,561,186 JBrowse link
G Ctsl cathepsin L involved_in ISO (PMID:16081529), (PMID:32221306), (PMID:32855215) UniProt PMID:16081529 PMID:32221306 PMID:32855215 NCBI chrNW_004936680:3,047,355...3,050,640 JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 involved_in ISO (PMID:21047970) CACAO PMID:21047970 NCBI chrNW_004936522:9,438,929...9,486,781 JBrowse link
G Kiaa0319l KIAA0319 like acts_upstream_of_or_within ISO (MGI:5750797|PMID:26814968) MGI PMID:26814968 MGI:5750797 NCBI chrNW_004936474:18,002,864...18,110,000 JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:32221306) UniProt PMID:32221306 NCBI chrNW_004936950:242,071...323,204 JBrowse link
G Tpcn2 two pore segment channel 2 involved_in ISO (PMID:32221306) UniProt PMID:32221306 NCBI chrNW_004936599:1,301,937...1,343,046 JBrowse link
receptor-mediated virion attachment to host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ace2 angiotensin converting enzyme 2 involved_in ISO (PMID:18343844), (PMID:32221306) BHF-UCL PMID:18343844 PMID:32221306 NCBI chrNW_004936470:4,964,526...5,011,808 JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO (PMID:21501828) UniProt PMID:21501828 NCBI chrNW_004936472:27,116...57,158 JBrowse link
G Icam1 intercellular adhesion molecule 1 involved_in ISO (PMID:2538243) BHF-UCL PMID:2538243 NCBI chrNW_004936659:616,570...627,172 JBrowse link
G Lrrc15 leucine rich repeat containing 15 involved_in ISO (PMID:18385238) UniProt PMID:18385238 NCBI chrNW_004936711:441,804...443,615 JBrowse link
regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101964975 interleukin-8 involved_in ISO (PMID:11483765) UniProt PMID:11483765 NCBI chrNW_004936598:1,779,471...1,781,353 JBrowse link
regulation of viral budding via host ESCRT complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snf8 SNF8 subunit of ESCRT-II involved_in ISO (PMID:22978549) UniProt PMID:22978549 NCBI chrNW_004936490:12,507,147...12,520,424 JBrowse link
regulation of viral entry into host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hs3st5 heparan sulfate-glucosamine 3-sulfotransferase 5 involved_in ISO (PMID:12138164) UniProt PMID:12138164 NCBI chrNW_004936679:2,540,894...2,737,462 JBrowse link
G Nectin2 nectin cell adhesion molecule 2 involved_in ISO (PMID:11602758) CACAO PMID:11602758 NCBI chrNW_004936706:1,470,910...1,498,986 JBrowse link
G Trim25 tripartite motif containing 25 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004936490:5,979,320...5,997,632 JBrowse link
G Trim62 tripartite motif containing 62 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004936474:15,998,996...16,029,555 JBrowse link
regulation of viral genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2 apoptosis regulator involved_in ISO (MGI:3700400|PMID:16950491) UniProt PMID:16950491 MGI:3700400 NCBI chrNW_004936497:2,209,136...2,373,580 JBrowse link
G Ddx5 DEAD-box helicase 5 ISO RGD PMID:19224332 RGD:5128521 NCBI chrNW_004936541:5,005,211...5,013,439 JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:3718936|PMID:17613256) MGI PMID:17613256 MGI:3718936 NCBI chrNW_004936846:528,768...584,599 JBrowse link
G Ppia peptidylprolyl isomerase A involved_in ISO (PMID:11250896) UniProt PMID:11250896 NCBI chrNW_004936478:19,669,727...19,673,355 JBrowse link
regulation of viral life cycle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamp3 lysosomal associated membrane protein 3 involved_in ISO (PMID:21810281) ParkinsonsUK-UCL PMID:21810281 NCBI chrNW_004936566:365,326...394,985 JBrowse link
regulation of viral release from host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trim25 tripartite motif containing 25 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004936490:5,979,320...5,997,632 JBrowse link
G Trim31 tripartite motif containing 31 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004936723:934,808...945,279 JBrowse link
G Trim62 tripartite motif containing 62 involved_in ISO (PMID:18248090) UniProt PMID:18248090 NCBI chrNW_004936474:15,998,996...16,029,555 JBrowse link
G Tsg101 tumor susceptibility 101 NOT|involved_in ISO (PMID:11595185) UniProt PMID:11595185 NCBI chrNW_004936590:61,352...62,037 JBrowse link
single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 acts_upstream_of_or_within ISO (PMID:14963118) MGI PMID:14963118 NCBI chrNW_004936619:1,276,239...1,308,945 JBrowse link
viral budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:17701905) UniProt PMID:17701905 NCBI chrNW_004936561:6,756,360...6,798,964 JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO (PMID:15644320) UniProt PMID:15644320 NCBI chrNW_004936524:1,804,643...1,820,491 JBrowse link
G LOC101964793 programmed cell death 6 interacting protein involved_in ISO (PMID:18641129) UniProt PMID:18641129 NCBI chrNW_004936473:24,010,942...24,086,836 JBrowse link
G LOC101970059 uncharacterized LOC101970059 involved_in ISO (MGI:3850622|PMID:15256501) UniProt PMID:15256501 MGI:3850622 NCBI chrNW_004936528:752,572...809,127 JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:15256501) UniProt PMID:15256501 NCBI chrNW_004936487:15,181,009...15,217,952 JBrowse link
G Mvb12a multivesicular body subunit 12A involved_in ISO (PMID:18005716) UniProt PMID:18005716 NCBI chrNW_004936596:3,478,142...3,481,968 JBrowse link
G Mvb12b multivesicular body subunit 12B involved_in ISO (PMID:18005716) UniProt PMID:18005716 NCBI chrNW_004936487:14,178,299...14,431,687 JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase acts_upstream_of ISO (PMID:15126635) BHF-UCL PMID:15126635 NCBI chrNW_004936471:17,254,777...17,374,725 JBrowse link
G Tsg101 tumor susceptibility 101 involved_in ISO (PMID:15126635), (PMID:18005716) BHF-UCL PMID:15126635 PMID:18005716 NCBI chrNW_004936590:61,352...62,037 JBrowse link
G Vta1 vesicle trafficking 1 involved_in ISO (PMID:15644320) UniProt PMID:15644320 NCBI chrNW_004936625:3,761,512...3,829,043 JBrowse link
viral budding from plasma membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:14505570) UniProt PMID:14505570 NCBI chrNW_004937062:133,361...136,329 JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:14505570) UniProt PMID:14505570 NCBI chrNW_004936712:1,023,994...1,044,727 JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:14505570) UniProt PMID:14505570 NCBI chrNW_004936561:6,756,360...6,798,964 JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in ISO (PMID:14505570) UniProt PMID:14505570 NCBI chrNW_004936656:2,531,654...2,558,106 JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in ISO (PMID:16193069), (PMID:17940959) UniProt PMID:16193069 PMID:17940959 NCBI chrNW_004936475:19,432,311...19,444,223 JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in ISO (PMID:14505570), (PMID:16193069), (PMID:17940959) UniProt PMID:14505570 PMID:16193069 PMID:17940959 NCBI chrNW_004936497:2,126,064...2,161,451 JBrowse link
viral budding via host ESCRT complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:24878737) UniProt PMID:24878737 NCBI chrNW_004936626:391,942...394,440 JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:24107264)
(PMID:24878737)
(PMID:23051622)
UniProt PMID:23051622 PMID:24107264 PMID:24878737 NCBI chrNW_004937062:133,361...136,329 JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO (PMID:23051622)
(PMID:24878737)
(PMID:24107264)
UniProt PMID:23051622 PMID:24107264 PMID:24878737 NCBI chrNW_004936610:2,282,925...2,320,554 JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:24878737)
(PMID:16740483), (PMID:23051622)
UniProt PMID:16740483 PMID:23051622 PMID:24878737 NCBI chrNW_004936712:1,023,994...1,044,727 JBrowse link
G Chmp4a charged multivesicular body protein 4A involved_in ISO (PMID:24107264)
(PMID:24878737)
UniProt PMID:24107264 PMID:24878737 NCBI chrNW_004936722:341,066...344,928 JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:24107264)
(PMID:24878737)
UniProt PMID:24107264 PMID:24878737 NCBI chrNW_004936561:6,756,360...6,798,964 JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in ISO (PMID:24878737) UniProt PMID:24878737 NCBI chrNW_004936594:4,769,409...4,775,186 JBrowse link
G LOC101964793 programmed cell death 6 interacting protein involved_in ISO (PMID:24107264) UniProt PMID:24107264 NCBI chrNW_004936473:24,010,942...24,086,836 JBrowse link
G Mitd1 microtubule interacting and trafficking domain containing 1 NOT|involved_in ISO (PMID:23045692) UniProt PMID:23045692 NCBI chrNW_004936661:1,619,703...1,632,558 JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in ISO (PMID:24107264) UniProt PMID:24107264 NCBI chrNW_004936475:19,432,311...19,444,223 JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in ISO (PMID:24107264) UniProt PMID:24107264 NCBI chrNW_004936497:2,126,064...2,161,451 JBrowse link
viral entry into host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ace2 angiotensin converting enzyme 2 involved_in ISO (PMID:16051304), (PMID:32221306), (PMID:33000221), (PMID:33082294), (PMID:33713620) UniProt PMID:16051304 PMID:32221306 PMID:33000221 PMID:33082294 PMID:33713620 NCBI chrNW_004936470:4,964,526...5,011,808 JBrowse link
G Agtr1 angiotensin II receptor type 1 involved_in ISO (PMID:33713620) UniProt PMID:33713620 NCBI chrNW_004936519:6,831,096...6,873,977 JBrowse link
G Avpr1b arginine vasopressin receptor 1B involved_in ISO (PMID:33713620) UniProt PMID:33713620 NCBI chrNW_004936557:6,415,544...6,423,863 JBrowse link
G Axl AXL receptor tyrosine kinase involved_in ISO (PMID:21047970) CACAO PMID:21047970 NCBI chrNW_004936661:3,658,140...3,687,290 JBrowse link
G Clec4g C-type lectin domain family 4 member G involved_in ISO (PMID:16051304), (PMID:24623090) FlyBase PMID:16051304 PMID:24623090 NCBI chrNW_004936588:4,737,278...4,740,750 JBrowse link
G Ctsl cathepsin L involved_in ISO (PMID:16339146), (PMID:18562523), (PMID:26953343), (PMID:32855215) UniProt PMID:16339146 PMID:18562523 PMID:26953343 PMID:32855215 NCBI chrNW_004936680:3,047,355...3,050,640 JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 involved_in ISO (PMID:20202662) CACAO PMID:20202662 NCBI chrNW_004936522:9,438,929...9,486,781 JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO (PMID:21501828) UniProt PMID:21501828 NCBI chrNW_004936472:27,116...57,158 JBrowse link
G Gpr15 G protein-coupled receptor 15 involved_in ISO (PMID:15650194) UniProt PMID:15650194 NCBI chrNW_004936630:4,459,213...4,462,285 JBrowse link
G Grk2 G protein-coupled receptor kinase 2 involved_in ISO (PMID:23029581) CACAO PMID:23029581 NCBI chrNW_004936599:2,437,061...2,456,141 JBrowse link
G Hyal2 hyaluronidase 2 ISO facilitates RGD PMID:12584308 RGD:633153 NCBI chrNW_004936529:1,845,445...1,851,106 JBrowse link
G Itgav integrin subunit alpha V involved_in ISO (PMID:25063885) UniProt PMID:25063885 NCBI chrNW_004936506:10,750,116...10,839,018 JBrowse link
G Itgb3 integrin subunit beta 3 involved_in ISO (PMID:25063885) UniProt PMID:25063885 NCBI chrNW_004936541:2,822,789...2,871,069 JBrowse link
G Lamp3 lysosomal associated membrane protein 3 NOT|involved_in ISO (PMID:21810281) ParkinsonsUK-UCL PMID:21810281 NCBI chrNW_004936566:365,326...394,985 JBrowse link
G LOC101954488 CEA cell adhesion molecule 1 acts_upstream_of_or_within ISO (MGI:49235|PMID:1719235) MGI PMID:1719235 MGI:49235 NCBI chrNW_004936706:37,480...53,306 JBrowse link
G Nectin1 nectin cell adhesion molecule 1 ISO RGD PMID:12584355 RGD:1599797 NCBI chrNW_004936542:4,501,081...4,602,338 JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 involved_in ISO (PMID:21866101), (PMID:21866103)
(MGI:5289741|PMID:21866103), (MGI:5619456|PMID:21866101)
CACAO PMID:21866101 PMID:21866103 MGI:5289741 MGI:5619456 NCBI chrNW_004936550:2,983,172...3,032,222 JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (PMID:33000221), (PMID:33082294) UniProt PMID:33000221 PMID:33082294 NCBI chrNW_004936574:1,694,433...1,834,720 JBrowse link
G Phb prohibitin involved_in ISO (MGI:6436975|PMID:29324904) UniProt PMID:29324904 MGI:6436975 NCBI chrNW_004936490:12,127,065...12,138,870 JBrowse link
G Siglec1 sialic acid binding Ig like lectin 1 involved_in ISO (PMID:12857889) AgBase PMID:12857889 NCBI chrNW_004936485:14,979,838...14,999,047 JBrowse link
G Slc3a2 solute carrier family 3 member 2 involved_in ISO (PMID:30341327) UniProt PMID:30341327 NCBI chrNW_004936581:424,801...441,592 JBrowse link
G Smpd1 sphingomyelin phosphodiesterase 1 involved_in ISO (PMID:22573858) UniProt PMID:22573858 NCBI chrNW_004936842:448,315...452,557 JBrowse link
G Uvrag UV radiation resistance associated acts_upstream_of_or_within ISO (MGI:5552992|PMID:24550300) MGI PMID:24550300 MGI:5552992 NCBI chrNW_004936498:4,555,325...4,869,099 JBrowse link
G Vamp8 vesicle associated membrane protein 8 acts_upstream_of_or_within ISO (PMID:24550300) MGI PMID:24550300 NCBI chrNW_004936712:1,688,126...1,689,742 JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes acts_upstream_of_or_within ISO (MGI:5552992|PMID:24550300) MGI PMID:24550300 MGI:5552992 NCBI chrNW_004936485:15,879,324...15,900,544 JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes acts_upstream_of_or_within ISO (MGI:5552992|PMID:24550300) MGI PMID:24550300 MGI:5552992 NCBI chrNW_004936471:4,289,487...4,297,634 JBrowse link
G Znf639 zinc finger protein 639 involved_in ISO (PMID:20484494) UniProt PMID:20484494 NCBI chrNW_004936566:3,831,234...3,841,972 JBrowse link
viral exocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ADP ribosylation factor like GTPase 8B involved_in ISO (PMID:33157038)
(MGI:6508519|PMID:33157038)
UniProt PMID:33157038 MGI:6508519 NCBI chrNW_004936577:4,430,939...4,475,186 JBrowse link
viral genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gas6 growth arrest specific 6 involved_in ISO (PMID:21501828) UniProt PMID:21501828 NCBI chrNW_004936472:27,116...57,158 JBrowse link
G Grk2 G protein-coupled receptor kinase 2 involved_in ISO (PMID:23029581) CACAO PMID:23029581 NCBI chrNW_004936599:2,437,061...2,456,141 JBrowse link
G Kpna6 karyopherin subunit alpha 6 acts_upstream_of_or_within ISO (MGI:5898166|PMID:28189564) MGI PMID:28189564 MGI:5898166 NCBI chrNW_004936474:15,168,344...15,229,864 JBrowse link
G LOC101972576 valosin containing protein involved_in ISO (PMID:22379090) CACAO PMID:22379090 NCBI chrNW_004936524:3,085,959...3,102,461 JBrowse link
viral release from host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101977053 IST1 factor associated with ESCRT-III involved_in ISO (PMID:19129479) UniProt PMID:19129479 NCBI chrNW_004936475:21,890,011...21,908,256 JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:22072966) CACAO PMID:22072966 NCBI chrNW_004936798:297,600...304,929 JBrowse link
viral replication complex formation and maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pi4ka phosphatidylinositol 4-kinase alpha involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chrNW_004936619:2,240,641...2,377,088 JBrowse link
viral RNA genome packaging term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx6 DEAD-box helicase 6 involved_in ISO (PMID:22022269) CACAO PMID:22022269 NCBI chrNW_004936542:3,748,599...3,781,405 JBrowse link
G Pc pyruvate carboxylase involved_in ISO (PMID:23861867) AgBase PMID:23861867 NCBI chrNW_004936599:2,677,770...2,793,033 JBrowse link
viral RNA genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chrNW_004936474:7,556,765...7,598,687 JBrowse link
G Eea1 early endosome antigen 1 involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chrNW_004936507:9,331,572...9,465,708 JBrowse link
G Pcbp1 poly(rC) binding protein 1 involved_in ISO (PMID:12414943) UniProt PMID:12414943 NCBI chrNW_004936491:14,280,616...14,282,148 JBrowse link
G Pcbp2 poly(rC) binding protein 2 involved_in ISO (PMID:12414943) UniProt PMID:12414943 NCBI chrNW_004936512:10,732,129...10,754,885 JBrowse link
G Pi4ka phosphatidylinositol 4-kinase alpha involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chrNW_004936619:2,240,641...2,377,088 JBrowse link
G Pik3c2g phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chrNW_004936548:7,604,272...7,923,984 JBrowse link
G Rab29 RAB29, member RAS oncogene family involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chrNW_004936557:6,673,092...6,679,715 JBrowse link
G Rab5a RAB5A, member RAS oncogene family involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chrNW_004936473:12,238,226...12,267,339 JBrowse link
G Rock2 Rho associated coiled-coil containing protein kinase 2 involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chrNW_004936532:7,142,580...7,284,722 JBrowse link
virion assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E involved_in ISO (PMID:25122793) AgBase PMID:25122793 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (PMID:21680502) UniProt PMID:21680502 NCBI chrNW_004936491:9,858,645...9,891,674 JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in
NOT|involved_in
ISO (PMID:21680502) UniProt PMID:21680502 NCBI chrNW_004936599:3,317,258...3,324,208 JBrowse link
G Rab43 RAB43, member RAS oncogene family involved_in ISO (PMID:21680502) UniProt PMID:21680502 NCBI chrNW_004936798:176,772...180,387 JBrowse link
G Spcs1 signal peptidase complex subunit 1 involved_in ISO (PMID:24009510), (PMID:29593046) UniProt PMID:24009510 PMID:29593046 NCBI chrNW_004936473:3,495,964...3,497,573 JBrowse link
G Tbc1d20 TBC1 domain family member 20 involved_in ISO (PMID:21680502) UniProt PMID:21680502 NCBI chrNW_004936485:18,034,776...18,055,741 JBrowse link
G Usp6nl USP6 N-terminal like involved_in ISO (PMID:21680502) UniProt PMID:21680502 NCBI chrNW_004936484:3,635,966...3,802,906 JBrowse link
virion attachment to host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in ISO (PMID:24098578) CACAO PMID:24098578 NCBI chrNW_004936476:15,830,459...15,836,994 JBrowse link
virus maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mvb12a multivesicular body subunit 12A involved_in ISO (PMID:18005716) UniProt PMID:18005716 NCBI chrNW_004936596:3,478,142...3,481,968 JBrowse link
G Mvb12b multivesicular body subunit 12B involved_in ISO (PMID:18005716) UniProt PMID:18005716 NCBI chrNW_004936487:14,178,299...14,431,687 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12130
    viral process 284
      viral life cycle 210
        intracellular transport of virus + 7
        negative regulation of viral life cycle + 25
        positive regulation of viral life cycle + 31
        regulation of viral life cycle + 123
        viral entry into host cell + 64
        viral genome integration into host DNA 0
        viral genome replication + 101
        viral release from host cell + 34
        virion assembly + 31
        virion attachment to host cell + 6
        virus maturation + 2
paths to the root