Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:protein prenylation
go back to main search page
Accession:GO:0018342 term browser browse the term
Definition:The covalent attachment of a prenyl group to a protein; geranyl, farnesyl, or geranylgeranyl groups may be added.
Synonyms:exact_synonym: protein amino acid prenylation
 narrow_synonym: C-terminal protein prenylation
 alt_id: GO:0018346


show annotations for term's descendants           Sort by:
protein prenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plpp6 phospholipid phosphatase 6 involved_in ISO
ISS		 (PMID:20110354)
GO_REF:0000024		 RGD
UniProt		 PMID:20110354 GO_REF:0000024 NCBI chr 1:226,679,100...226,681,952
Ensembl chr 1:226,679,100...226,681,949 		JBrowse link
G Ptar1 protein prenyltransferase alpha subunit repeat containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:221,283,306...221,326,861
Ensembl chr 1:221,283,415...221,327,073 		JBrowse link
G Rce1 Ras converting CAAX endopeptidase 1 involved_in ISO (PMID:10085068) RGD PMID:10085068 NCBI chr 1:201,899,358...201,902,593
Ensembl chr 1:201,899,358...201,902,484 		JBrowse link
positive regulation of protein geranylgeranylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agrn agrin involved_in ISO (MGI:2680892|PMID:14622576) RGD PMID:14622576 MGI:2680892 NCBI chr 5:166,749,306...166,782,212
Ensembl chr 5:166,749,310...166,786,003 		JBrowse link
G Musk muscle associated receptor tyrosine kinase involved_in ISO (MGI:2680892|PMID:14622576) RGD PMID:14622576 MGI:2680892 NCBI chr 5:73,058,427...73,169,696
Ensembl chr 5:73,058,121...73,171,932 		JBrowse link
protein farnesylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 acts_upstream_of_or_within ISO (PMID:14555765) RGD PMID:14555765 NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922 		JBrowse link
G Churc1 churchill domain containing 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 6:95,464,488...95,485,208
Ensembl chr 6:95,470,683...95,619,586 		JBrowse link
G Fnta farnesyltransferase, CAAX box, alpha involved_in IEA
IBA
ISS
ISO		 GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:16893176), (PMID:19228685)		 Ensembl
UniProt
RGD		 PMID:16893176 PMID:19228685 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr16:66,065,131...66,083,460
Ensembl chr16:66,065,132...66,083,460 		JBrowse link
G Fntb farnesyltransferase, CAAX box, beta involved_in ISO
IBA
IEA
ISS		 (PMID:16893176), (PMID:19228685)
PMID:21873635
GO_REF:0000104
GO_REF:0000024		 RGD
UniProt		 PMID:16893176 PMID:19228685 PMID:21873635 GO_REF:0000024 GO_REF:0000104, RGD:13792537 NCBI chr 6:95,536,540...95,619,587
Ensembl chr 6:95,470,683...95,619,586 		JBrowse link
protein geranylgeranylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chm CHM Rab escort protein involved_in IEA
IDA
ISO
IBA
ISS		 GO_REF:0000104
PMID:15186776
(PMID:7957092)
PMID:21873635
GO_REF:0000024		 UniProt
RGD		 PMID:7957092 PMID:15186776 PMID:21873635 GO_REF:0000024 GO_REF:0000104, RGD:8553294, RGD:13792537 NCBI chr  X:78,203,200...78,361,996
Ensembl chr  X:78,203,204...78,361,943 		JBrowse link
G Chml CHM like Rab escort protein involved_in ISO (PMID:12356470), (PMID:15186776) RGD PMID:12356470 PMID:15186776 NCBI chr13:87,613,610...87,615,475
Ensembl chr13:87,589,298...87,619,862 		JBrowse link
G ENSRNOG00000070626 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr 7:98,272,185...98,273,030 JBrowse link
G Fnta farnesyltransferase, CAAX box, alpha involved_in IEA
IBA
ISO
ISS		 GO_REF:0000107
PMID:21873635
(PMID:16893176)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:16893176 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr16:66,065,131...66,083,460
Ensembl chr16:66,065,132...66,083,460 		JBrowse link
G Pggt1b protein geranylgeranyltransferase type I subunit beta involved_in TAS
IEA
IBA
IDA
ISS
ISO		 GO_REF:0000002
PMID:21873635
PMID:14609943
GO_REF:0000024
(PMID:16893176)		 InterPro
UniProt
RGD		 PMID:16893176 PMID:8106351 PMID:21873635 PMID:14609943 GO_REF:0000002 GO_REF:0000024, RGD:729477, RGD:13792537, RGD:8554040 NCBI chr18:38,952,147...38,995,656
Ensembl chr18:38,952,914...38,995,503 		JBrowse link
G Rabggta Rab geranylgeranyltransferase subunit alpha involved_in
acts_upstream_of_or_within		 IDA
IEA
ISO
IBA		 GO_REF:0000104
MGI:1856886 (MGI:1334476|PMID:10737774)
PMID:21873635
PMID:18756270		 UniProt
RGD		 PMID:10737774 PMID:8505342 PMID:21873635 PMID:18756270 GO_REF:0000104 MGI:1334476, RGD:69952, RGD:13792537, RGD:8554706 NCBI chr15:29,206,328...29,213,398
Ensembl chr15:29,206,157...29,213,348 		JBrowse link
G Rabggtb Rab geranylgeranyltransferase subunit beta involved_in IDA
IBA
IEA		 PMID:18756270
PMID:21873635
GO_REF:0000104		 UniProt
RGD		 PMID:8505342 PMID:18756270 PMID:21873635 GO_REF:0000104, RGD:69952, RGD:8554706, RGD:13792537 NCBI chr 2:242,844,758...242,850,022
Ensembl chr 2:242,844,762...242,851,050 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19738
    metabolic process 12010
      cellular metabolic process 7444
        prenylation 15
          protein prenylation 15
            protein farnesylation + 4
            protein geranylgeranylation + 9
Path 2
Term Annotations click to browse term
  biological_process 19738
    metabolic process 12010
      organic substance metabolic process 11557
        organonitrogen compound metabolic process 6750
          protein metabolic process 5765
            protein modification process 3486
              protein prenylation 15
                protein farnesylation + 4
                protein geranylgeranylation + 9
paths to the root