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ONTOLOGY REPORT - ANNOTATIONS


Term:protein-chromophore linkage
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Accession:GO:0018298 term browser browse the term
Definition:The covalent or noncovalent attachment of a chromophore to a protein.


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protein-chromophore linkage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambp alpha-1-microglobulin/bikunin precursor involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:76,568,094...76,578,416 JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:18,529,823...18,594,092 JBrowse link
G Cry2 cryptochrome circadian regulator 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:78,374,995...78,405,001 JBrowse link
G Opn1mw opsin 1, medium wave sensitive involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:151,905,096...151,925,322 JBrowse link
G Opn1sw opsin 1, short wave sensitive involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:57,977,317...57,980,457 JBrowse link
G Opn3 opsin 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:87,589,330...87,619,847 JBrowse link
G Opn4 opsin 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:9,920,408...9,929,580 JBrowse link
G Opn5 opsin 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:18,368,393...18,416,098 JBrowse link
G Rho rhodopsin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:148,975,597...148,988,693 JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:218,362,195...218,375,202 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    metabolic process 11795
      cellular metabolic process 10753
        cellular macromolecule metabolic process 8240
          cellular protein metabolic process 5228
            cellular protein modification process 3613
              protein-chromophore linkage 10
                peptide cross-linking via 2-imino-glutamic acid 5-imidazolinone glycine 0
                peptide cross-linking via 2-imino-glutaminyl-5-imidazolinone glycine 0
                peptide cross-linking via 2-imino-methionine 5-imidazolinone glycine 0
                peptide cross-linking via 2-tetrahydropyridinyl-5-imidazolinone glycine 0
                peptide cross-linking via 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one 0
                peptide cross-linking via L-asparagine 5-imidazolinone glycine 0
                peptide cross-linking via L-lysine 5-imidazolinone glycine 0
                peptide cross-linking via L-seryl-5-imidazolinone glycine 0
                protein-chromophore linkage via peptidyl-N6-3-dehydroretinal-L-lysine 0
                protein-chromophore linkage via peptidyl-N6-retinal-L-lysine 0
                protein-chromophore linkage via peptidyl-S-4-hydroxycinnamyl-L-cysteine 0
                protein-chromophore linkage via peptidyl-cysteine + 0
Path 2
Term Annotations click to browse term
  biological_process 19492
    metabolic process 11795
      organic substance metabolic process 11334
        macromolecule metabolic process 9790
          protein metabolic process 5890
            protein modification process 3613
              cellular protein modification process 3613
                protein-chromophore linkage 10
                  peptide cross-linking via 2-imino-glutamic acid 5-imidazolinone glycine 0
                  peptide cross-linking via 2-imino-glutaminyl-5-imidazolinone glycine 0
                  peptide cross-linking via 2-imino-methionine 5-imidazolinone glycine 0
                  peptide cross-linking via 2-tetrahydropyridinyl-5-imidazolinone glycine 0
                  peptide cross-linking via 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one 0
                  peptide cross-linking via L-asparagine 5-imidazolinone glycine 0
                  peptide cross-linking via L-lysine 5-imidazolinone glycine 0
                  peptide cross-linking via L-seryl-5-imidazolinone glycine 0
                  protein-chromophore linkage via peptidyl-N6-3-dehydroretinal-L-lysine 0
                  protein-chromophore linkage via peptidyl-N6-retinal-L-lysine 0
                  protein-chromophore linkage via peptidyl-S-4-hydroxycinnamyl-L-cysteine 0
                  protein-chromophore linkage via peptidyl-cysteine + 0
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