Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:negative regulation of RNA polymerase II transcription preinitiation complex assembly
go back to main search page
Accession:GO:0017055 term browser browse the term
Definition:Any process that stops, prevents, or reduces the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly.
Synonyms:exact_synonym: down regulation of RNA polymerase II transcriptional preinitiation complex assembly;   downregulation of RNA polymerase II transcriptional preinitiation complex assembly;   negative regulation of RNA polymerase II transcriptional pre-initiation complex assembly;   negative regulation of RNA polymerase II transcriptional pre-initiation complex biosynthesis;   negative regulation of RNA polymerase II transcriptional preinitiation complex assembly;   negative regulation of RNA polymerase II transcriptional preinitiation complex formation
 narrow_synonym: inhibition of RNA polymerase II transcriptional preinitiation complex assembly

Please select species to view GViewer data.

show annotations for term's descendants           Sort by:
negative regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G N Hmgb1 high mobility group box 1 involved_in ISO (PMID:8006019) UniProt PMID:8006019 NCBI chrNW_004624776:7,858,400...7,862,716
Ensembl chrNW_004624776:7,793,259...7,863,184 		JBrowse link
G G HMGB1 high mobility group box 1 involved_in ISO (PMID:8006019) UniProt PMID:8006019 NCBI chr 3:9,353,333...9,357,765 JBrowse link
G P HMGB1 high mobility group box 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr11:7,195,556...7,321,071 JBrowse link
G S Hmgb1 high mobility group box 1 involved_in ISO (PMID:8006019) UniProt PMID:8006019 NCBI chrNW_004936472:25,236,728...25,246,585
Ensembl chrNW_004936472:25,236,728...25,246,580 		JBrowse link
G D HMGB1 high mobility group box 1 involved_in ISO (PMID:8006019) UniProt PMID:8006019 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165 		JBrowse link
G B HMGB1 high mobility group box 1 involved_in ISO (PMID:8006019) UniProt PMID:8006019 NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527 		JBrowse link
G C Hmgb1 high mobility group box 1 involved_in ISO (PMID:8006019) UniProt PMID:8006019 NCBI chrNW_004955431:15,373,207...15,377,339
Ensembl chrNW_004955431:15,373,207...15,377,339 		JBrowse link
G R Hmgb1 high mobility group box 1 involved_in ISO (PMID:8006019) RGD PMID:8006019 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G M Hmgb1 high mobility group box 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 5:148,983,512...148,989,867
Ensembl chr 5:148,983,512...149,121,299 		JBrowse link
G H HMGB1 high mobility group box 1 involved_in IDA (PMID:8006019) UniProt PMID:8006019 NCBI chr13:30,456,704...30,617,597
Ensembl chr13:30,456,704...30,617,597 		JBrowse link
G N Thra thyroid hormone receptor alpha involved_in ISO (PMID:8524305) UniProt PMID:8524305 NCBI chrNW_004624795:3,109,663...3,132,494
Ensembl chrNW_004624795:3,108,854...3,132,464 		JBrowse link
G G THRA thyroid hormone receptor alpha involved_in ISO (PMID:8524305) UniProt PMID:8524305 NCBI chr16:66,087,071...66,118,137 JBrowse link
G G THRA thyroid hormone receptor alpha involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:66,085,067...66,118,079 JBrowse link
G P THRA thyroid hormone receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:22,270,506...22,296,684
Ensembl chr12:22,270,062...22,296,618 		JBrowse link
G S Thra thyroid hormone receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,188,341...15,206,032
Ensembl chrNW_004936490:15,193,150...15,206,784 		JBrowse link
G D THRA thyroid hormone receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:22,469,466...22,493,445
Ensembl chr 9:22,468,594...22,493,445 		JBrowse link
G B THRA thyroid hormone receptor alpha involved_in ISO (PMID:8524305) UniProt PMID:8524305 NCBI chr17:17,196,459...17,226,263 JBrowse link
G C Thra thyroid hormone receptor alpha involved_in ISO (PMID:8524305) UniProt PMID:8524305 NCBI chrNW_004955451:14,731,746...14,743,545
Ensembl chrNW_004955451:14,731,746...14,744,367 		JBrowse link
G R Thra thyroid hormone receptor alpha involved_in ISO
IEA		 (PMID:8524305)
GO_REF:0000107		 RGD
Ensembl		 PMID:8524305 GO_REF:0000107 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936 		JBrowse link
G M Thra thyroid hormone receptor alpha involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:98,631,539...98,659,832
Ensembl chr11:98,631,464...98,659,832 		JBrowse link
G H THRA thyroid hormone receptor alpha involved_in IDA (PMID:8524305) UniProt PMID:8524305 NCBI chr17:40,062,193...40,093,867
Ensembl chr17:40,058,290...40,093,867 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 181129
    cellular process 160613
      negative regulation of cellular process 51866
        negative regulation of cellular component organization 7952
          negative regulation of protein-containing complex assembly 1598
            negative regulation of RNA polymerase II transcription preinitiation complex assembly 21
Path 2
Term Annotations click to browse term
  biological_process 181129
    metabolic process 103627
      organic substance metabolic process 99272
        organic cyclic compound metabolic process 56121
          nucleobase-containing compound metabolic process 51505
            nucleic acid metabolic process 46375
              RNA metabolic process 40867
                RNA biosynthetic process 30897
                  regulation of RNA biosynthetic process 29461
                    negative regulation of RNA biosynthetic process 12861
                      negative regulation of DNA-templated transcription 12760
                        negative regulation of DNA-templated transcription initiation 92
                          negative regulation of transcription initiation by RNA polymerase II 82
                            negative regulation of RNA polymerase II transcription preinitiation complex assembly 21
paths to the root