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ONTOLOGY REPORT - ANNOTATIONS


Term:retinal binding
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Accession:GO:0016918 term browser browse the term
Definition:Binding to retinal, one of the forms of vitamin A. Retinal plays an important role in the visual process in most vertebrates, combining with opsins to form visual pigments in the retina.
Synonyms:exact_synonym: retinaldehyde binding
 broad_synonym: vitamin A binding
 related_synonym: UV-sensitive opsin;   blue-sensitive opsin;   green-sensitive opsin;   long-wave-sensitive opsin;   opsin;   red-sensitive opsin;   short-wave-sensitive opsin;   violet-sensitive opsin


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retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b10 aldo-keto reductase family 1 member B10 IDA RGD PMID:20709016 RGD:6903952 NCBI chr 4:63,038,459...63,060,336
Ensembl chr 4:63,040,169...63,053,852
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 IDA RGD PMID:8663198 RGD:724800 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
JBrowse link
G Crabp1 cellular retinoic acid binding protein 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:55,138,363...55,159,360
Ensembl chr 8:55,151,285...55,159,360
JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:173,417,004...173,421,352
Ensembl chr 2:173,416,857...173,421,379
JBrowse link
G Rbp1 retinol binding protein 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:99,025,218...99,046,740
Ensembl chr 8:99,025,206...99,046,743
JBrowse link
G Rbp2 retinol binding protein 2 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:99,079,293...99,104,489
Ensembl chr 8:99,079,104...99,104,473
JBrowse link
G Rbp4 retinol binding protein 4 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Rho rhodopsin IDA 9-cis retinaldehyde
9-cis and 11-cis retinal
RGD PMID:2525480 PMID:8814134 RGD:6893558, RGD:6893595 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:58,549,743...58,568,861
Ensembl chr 8:58,549,736...58,568,860
JBrowse link
11-cis retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 enables ISO (PMID:23144455) RGD PMID:23144455 NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069
JBrowse link
G Opn3 opsin 3 enables ISO (PMID:31097585) RGD PMID:31097585 NCBI chr13:87,589,330...87,619,847
Ensembl chr13:87,589,333...87,619,847
JBrowse link
G Opn4 opsin 4 enables ISO
ISS
(PMID:15674244)
GO_REF:0000024
RGD
UniProt
PMID:15674244 GO_REF:0000024 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
JBrowse link
G Opn5 opsin 5 enables ISO (PMID:22043319)
(MGI:5582695|PMID:24403072), (MGI:6230806|PMID:22043319)
RGD PMID:22043319 PMID:24403072 MGI:5582695 MGI:6230806 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
G Rho rhodopsin enables ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Rlbp1 retinaldehyde binding protein 1 enables ISO (MGI:1097298|PMID:9326942) RGD PMID:9326942 MGI:1097298 NCBI chr 1:133,308,920...133,322,296
Ensembl chr 1:133,308,938...133,322,296
JBrowse link
all-trans retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 enables ISO (PMID:20404325), (PMID:29847635), (PMID:33375396) RGD PMID:20404325 PMID:29847635 PMID:33375396 NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069
JBrowse link
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide enables ISO (PMID:15369820) RGD PMID:15369820 NCBI chr 2:226,948,717...226,966,747 JBrowse link
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 enables ISO (PMID:26936974) RGD PMID:26936974 NCBI chr12:15,291,552...15,296,421
Ensembl chr12:15,291,704...15,296,421
JBrowse link
G Opn3 opsin 3 enables ISO (PMID:31097585) RGD PMID:31097585 NCBI chr13:87,589,330...87,619,847
Ensembl chr13:87,589,333...87,619,847
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19980
    binding 17010
      small molecule binding 2508
        vitamin binding 140
          retinal binding 16
            11-cis retinal binding 6
            all-trans retinal binding 4
Path 2
Term Annotations click to browse term
  molecular_function 19980
    binding 17010
      lipid binding 809
        isoprenoid binding 41
          retinoid binding 38
            retinal binding 16
              11-cis retinal binding 6
              all-trans retinal binding 4
paths to the root