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ONTOLOGY REPORT - ANNOTATIONS


Term:PML body
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Accession:GO:0016605 term browser browse the term
Definition:A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection.
Synonyms:exact_synonym: ND10;   PML NB;   PML nuclear body
 related_synonym: nuclear dot


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PML body term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ankrd2 ankyrin repeat domain 2 JBrowse link 1 261,281,859 261,291,307 RGD:1624291
G Arntl aryl hydrocarbon receptor nuclear translocator-like JBrowse link 1 178,039,002 178,137,469 RGD:1600115
G Atr ATR serine/threonine kinase JBrowse link 8 103,673,578 103,770,886 RGD:1624291
G Atrx ATRX, chromatin remodeler JBrowse link X 76,820,110 76,979,155 RGD:1624291
RGD:1600115
G Basp1 brain abundant, membrane attached signal protein 1 JBrowse link 2 77,586,424 77,632,626 RGD:1600115
RGD:1624291
G Blm BLM RecQ like helicase JBrowse link 1 142,246,773 142,332,616 RGD:1624291
G Calcoco2 calcium binding and coiled-coil domain 2 JBrowse link 10 83,935,087 83,963,750 RGD:1624291
G Casp8ap2 caspase 8 associated protein 2 JBrowse link 5 47,853,699 47,891,147 RGD:1624291
RGD:13792537
G Cbx5 chromobox 5 JBrowse link 7 144,819,673 144,865,014 RGD:1624291
G Cdk9 cyclin-dependent kinase 9 JBrowse link 3 11,742,269 11,747,117 RGD:1624291
G Chek2 checkpoint kinase 2 JBrowse link 12 51,845,574 51,878,098 RGD:1624291
G Chfr checkpoint with forkhead and ring finger domains JBrowse link 12 52,562,594 52,596,162 RGD:1624291
RGD:1600115
G Ciita class II, major histocompatibility complex, transactivator JBrowse link 10 5,212,621 5,260,641 RGD:1624291
G Dapk3 death-associated protein kinase 3 JBrowse link 7 11,392,436 11,400,855 RGD:1624291
G Daxx death-domain associated protein JBrowse link 20 5,480,103 5,485,962 RGD:9587773
RGD:13792537
RGD:1600115
RGD:1624291
G Eif3e eukaryotic translation initiation factor 3 subunit E JBrowse link 7 82,997,694 83,037,231 RGD:1624291
G Eif3el1 eukaryotic translation initiation factor 3, subunit E-like 1 JBrowse link 13 100,129,757 100,162,596 RGD:1600115
G Elf4 E74 like ETS transcription factor 4 JBrowse link X 135,239,626 135,284,330 RGD:1624291
G Hipk1 homeodomain interacting protein kinase 1 JBrowse link 2 206,224,015 206,274,910 RGD:1624291
RGD:13792537
RGD:1600115
G Hipk2 homeodomain interacting protein kinase 2 JBrowse link 4 66,438,390 66,625,183 RGD:1624291
RGD:13792537
G Hipk3 homeodomain interacting protein kinase 3 JBrowse link 3 94,349,778 94,419,185 RGD:1600115
RGD:13792537
RGD:1624291
G Hsf1 heat shock transcription factor 1 JBrowse link 7 117,538,523 117,565,478 RGD:1624291
G Ikbke inhibitor of nuclear factor kappa B kinase subunit epsilon JBrowse link 13 48,031,325 48,056,394 RGD:1624291
G Isg20 interferon stimulated exonuclease gene 20 JBrowse link 1 140,602,553 140,608,892 RGD:1624291
G Kat6a lysine acetyltransferase 6A JBrowse link 16 73,942,669 74,020,750 RGD:1624291
RGD:1600115
G Klhl20 kelch-like family member 20 JBrowse link 13 78,912,361 78,957,226 RGD:1624291
RGD:13792537
RGD:1600115
G LOC100365062 eukaryotic translation initiation factor 3, subunit 6 48kDa-like JBrowse link 1 66,643,731 66,645,224 RGD:1600115
G LOC100909481 eukaryotic translation initiation factor 3 subunit E-like JBrowse link 1 66,637,810 66,639,219 RGD:1600115
G LOC108348260 eukaryotic translation initiation factor 3 subunit E RGD:1600115
G Lrch4 leucine rich repeats and calponin homology domain containing 4 JBrowse link 12 22,127,387 22,138,436 RGD:1624291
RGD:13792537
G Mapk7 mitogen-activated protein kinase 7 JBrowse link 10 47,768,592 47,775,130 RGD:1624291
RGD:1600115
G Max MYC associated factor X JBrowse link 6 99,984,260 100,011,460 RGD:2316819
G Mknk2 MAPK interacting serine/threonine kinase 2 JBrowse link 7 11,908,107 11,919,161 RGD:1600115
G Mlip muscular LMNA-interacting protein JBrowse link 8 84,409,957 84,634,637 RGD:1624291
RGD:13792537
G Morc3 MORC family CW-type zinc finger 3 JBrowse link 11 34,051,928 34,094,697 RGD:1624291
G Mre11 MRE11 homolog, double strand break repair nuclease JBrowse link 8 13,304,355 13,350,329 RGD:1624291
RGD:1600115
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:1624291
RGD:1600115
G N4bp1 Nedd4 binding protein 1 JBrowse link 19 21,218,123 21,268,539 RGD:1624291
RGD:13792537
G Nbn nibrin JBrowse link 5 29,622,347 29,656,877 RGD:1624291
RGD:1600115
G Nfe2 nuclear factor, erythroid 2 JBrowse link 7 144,872,739 144,880,092 RGD:1600115
G Nr2c1 nuclear receptor subfamily 2, group C, member 1 JBrowse link 7 35,069,807 35,122,810 RGD:1624291
G Nsmce2 NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase JBrowse link 7 99,677,295 99,900,765 RGD:1624291
RGD:1600115
G Park7 Parkinsonism associated deglycase JBrowse link 5 167,982,438 168,004,724 RGD:1624291
RGD:1600115
G Patl1 PAT1 homolog 1, processing body mRNA decay factor JBrowse link 1 228,337,756 228,369,719 RGD:1600115
G Pias1 protein inhibitor of activated STAT, 1 JBrowse link 8 67,771,720 67,869,015 RGD:1624291
G Pias2 protein inhibitor of activated STAT, 2 JBrowse link 18 73,479,863 73,524,956 RGD:1600115
RGD:1624291
G Pml PML nuclear body scaffold JBrowse link 8 63,002,515 63,034,310 RGD:1624291
RGD:13792537
G Ppargc1a PPARG coactivator 1 alpha JBrowse link 14 63,095,291 63,190,688 RGD:1600115
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:1600115
G Rad51 RAD51 recombinase JBrowse link 3 110,918,240 110,942,920 RGD:1624291
G Rb1 RB transcriptional corepressor 1 JBrowse link 15 55,081,582 55,209,060 RGD:1600115
RGD:1624291
G Rere arginine-glutamic acid dipeptide repeats JBrowse link 5 167,330,966 167,664,506 RGD:1600115
G Rgs14 regulator of G-protein signaling 14 JBrowse link 17 9,777,925 9,792,007 RGD:1600115
G Rnf4 ring finger protein 4 JBrowse link 14 81,658,400 81,679,756 RGD:8553289
RGD:13792537
RGD:1624291
RGD:1600115
G Rnf6 ring finger protein 6 JBrowse link 12 10,574,168 10,583,196 RGD:1624291
G Rpa1 replication protein A1 JBrowse link 10 62,140,419 62,191,518 RGD:1624291
G Rpa2 replication protein A2 JBrowse link 5 150,957,041 150,967,597 RGD:1624291
RGD:1600115
G Rpain RPA interacting protein JBrowse link 10 57,606,287 57,613,834 RGD:1624291
RGD:13792537
G Satb1 SATB homeobox 1 JBrowse link 9 2,181,135 2,277,949 RGD:1624291
G Senp2 SUMO specific peptidase 2 JBrowse link 11 82,627,973 82,664,702 RGD:1624291
RGD:1600115
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
RGD:1600115
G Ski SKI proto-oncogene JBrowse link 5 172,556,196 172,623,878 RGD:1624291
G Skil SKI-like proto-oncogene JBrowse link 2 115,862,932 115,891,304 RGD:1624291
G Smc5 structural maintenance of chromosomes 5 JBrowse link 1 240,977,898 241,046,273 RGD:1624291
G Smc6 structural maintenance of chromosomes 6 JBrowse link 6 36,941,233 36,995,920 RGD:1624291
G Sp100 SP100 nuclear antigen JBrowse link 9 92,675,103 92,718,489 RGD:1624291
G Spn sialophorin JBrowse link 1 198,572,999 198,585,664 RGD:1600115
G Sptbn4 spectrin, beta, non-erythrocytic 4 JBrowse link 1 84,168,494 84,254,679 RGD:1624291
G Sqstm1 sequestosome 1 JBrowse link 10 35,704,728 35,716,316 RGD:1624291
G Srsf2 serine and arginine rich splicing factor 2 JBrowse link 10 105,792,779 105,795,986 RGD:1624291
G Sumo1 small ubiquitin-like modifier 1 JBrowse link 9 66,453,428 66,483,614 RGD:1624291
RGD:13792537
RGD:1600115
RGD:9587797
G Sumo2 small ubiquitin-like modifier 2 JBrowse link 10 104,085,401 104,097,983 RGD:1624291
RGD:1600115
G Sumo3 small ubiquitin-like modifier 3 JBrowse link 20 11,726,488 11,737,050 RGD:1624291
G Tdg thymine-DNA glycosylase JBrowse link 7 27,194,000 27,213,676 RGD:1624291
G Tdp2 tyrosyl-DNA phosphodiesterase 2 JBrowse link 17 42,229,667 42,241,025 RGD:1600115
RGD:13792537
RGD:1624291
G Tenm2 teneurin transmembrane protein 2 JBrowse link 10 20,846,091 21,791,771 RGD:1600115
G Tert telomerase reverse transcriptase JBrowse link 1 32,250,876 32,275,330 RGD:1624291
G Thap1 THAP domain containing 1 JBrowse link 16 70,661,360 70,665,831 RGD:1600115
G Top3a DNA topoisomerase III alpha JBrowse link 10 46,980,646 47,018,728 RGD:1624291
G Topbp1 DNA topoisomerase II binding protein 1 JBrowse link 8 111,790,655 111,835,224 RGD:1624291
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase JBrowse link 5 56,554,956 56,566,503 RGD:1624291
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 JBrowse link 5 24,402,895 24,419,651 RGD:1600115
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 JBrowse link 3 150,910,398 150,918,525 RGD:1600115
G Trim16 tripartite motif-containing 16 JBrowse link 10 49,231,660 49,254,653 RGD:1624291
G Trim8 tripartite motif-containing 8 JBrowse link 1 266,255,797 266,270,694 RGD:1624291
G Ube2i ubiquitin-conjugating enzyme E2I JBrowse link 10 14,618,615 14,639,274 RGD:1624291
G Usp7 ubiquitin specific peptidase 7 JBrowse link 10 6,930,462 7,019,910 RGD:1600115
G Wdfy3 WD repeat and FYVE domain containing 3 JBrowse link 14 9,169,409 9,384,835 RGD:1624291
G Zbtb16 zinc finger and BTB domain containing 16 JBrowse link 8 52,980,226 53,146,765 RGD:1624291
RGD:1600115
G Zmym2 zinc finger MYM-type containing 2 JBrowse link 15 37,156,250 37,229,803 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20118
    cellular anatomical entity 19774
      nuclear body 755
        PML body 91
Path 2
Term Annotations click to browse term
  cellular_component 20118
    cellular anatomical entity 19774
      organelle 12828
        intracellular organelle 12292
          intracellular membrane-bounded organelle 10208
            nucleus 6942
              nuclear lumen 4035
                nucleoplasm 3389
                  nuclear body 755
                    PML body 91
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.