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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA polymerase II, holoenzyme
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Accession:GO:0016591 term browser browse the term
Definition:A nuclear DNA-directed RNA polymerase complex containing an RNA polymerase II core enzyme as well as additional proteins and transcription factor complexes, that are capable of promoter recognition and transcription initiation from an RNA polymerase II promoter in vivo. These additional components may include general transcription factor complexes TFIIA, TFIID, TFIIE, TFIIF, or TFIIH, as well as Mediator, SWI/SNF, GCN5, or SRBs and confer the ability to recognize promoters.
Synonyms:exact_synonym: DNA-directed RNA polymerase II, holoenzyme



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RNA polymerase II, holoenzyme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MYO6 myosin VI part_of ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 1:89,992,860...90,137,767
Ensembl chr 1:89,992,866...90,137,734
JBrowse link
G POLR2M RNA polymerase II subunit M part_of IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 1:114,256,457...114,266,862
Ensembl chr 1:114,256,460...114,266,875
JBrowse link
G RECQL5 RecQ like helicase 5 part_of IEA Ensembl GO_REF:0000107 NCBI chr12:5,732,336...5,770,136
Ensembl chr12:5,732,348...5,770,136
JBrowse link
G RPAP2 RNA polymerase II associated protein 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:124,691,655...124,773,914
Ensembl chr 4:124,690,309...124,773,887
JBrowse link
G RPRD1A regulation of nuclear pre-mRNA domain containing 1A part_of IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 6:119,762,810...119,834,022
Ensembl chr 6:119,762,812...119,834,019
JBrowse link
G RPRD1B regulation of nuclear pre-mRNA domain containing 1B part_of IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr17:41,093,970...41,172,617
Ensembl chr17:41,094,062...41,176,894
JBrowse link
G RPRD2 regulation of nuclear pre-mRNA domain containing 2 part_of IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 4:98,640,925...98,734,606
Ensembl chr 4:98,640,930...98,734,298
JBrowse link
Cdc73/Paf1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC73 cell division cycle 73 part_of IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr10:575,075...667,618
Ensembl chr10:575,074...667,434
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:48,700,629...48,729,480
Ensembl chr 2:48,697,972...48,729,307
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component part_of IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr 1:119,804,992...119,842,343
Ensembl chr 1:119,805,039...119,897,073
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component part_of IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000117 NCBI chr 6:48,046,487...48,053,631
Ensembl chr 6:48,046,691...48,059,035
JBrowse link
G PEX2 peroxisomal biogenesis factor 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:59,252,330...59,270,117
Ensembl chr 4:59,252,337...59,270,117
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:129,886,798...129,942,845
Ensembl chr 1:129,886,800...129,942,982
JBrowse link
G SETD5 SET domain containing 5 part_of IEA Ensembl GO_REF:0000107 NCBI chr13:65,759,973...65,851,747
Ensembl chr13:65,759,954...65,850,531
JBrowse link
G WDR61 WD repeat domain 61 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:47,641,103...47,661,353
Ensembl chr 7:47,641,162...47,666,287
JBrowse link
core TFIIH complex portion of holo TFIIH complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2H3 general transcription factor IIH subunit 3 part_of IEA Ensembl GO_REF:0000107 NCBI chr14:29,335,715...29,355,465
Ensembl chr14:29,335,580...29,355,436
JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chr 7:23,398,414...23,404,268 JBrowse link
RNA polymerase II, core complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100525756 DNA-directed RNA polymerase II subunit RPB11-a pseudogene part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:107,462,166...107,462,817 JBrowse link
G LOC102164011 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like part_of ISO (PMID:9852112) UniProt PMID:9852112 NCBI chr 1:109,821,516...109,823,848 JBrowse link
G POLR2A RNA polymerase II subunit A part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:52,779,833...52,806,210
Ensembl chr12:52,779,825...52,810,165
JBrowse link
G POLR2B RNA polymerase II subunit B part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:56,232,730...56,283,367
Ensembl chr 8:56,231,771...56,285,014
JBrowse link
G POLR2C RNA polymerase II subunit C part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:19,393,569...19,401,119
Ensembl chr 6:19,393,597...19,401,117
JBrowse link
G POLR2D RNA polymerase II subunit D part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:59,479,631...59,495,975
Ensembl chr15:59,479,538...59,498,178
JBrowse link
G POLR2E RNA polymerase II, I and III subunit E part_of IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 2:77,330,755...77,341,910
Ensembl chr 2:77,330,686...77,341,903
JBrowse link
G POLR2F RNA polymerase II, I and III subunit F part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:9,905,359...9,917,721
Ensembl chr 5:9,855,983...9,917,726
JBrowse link
G POLR2G RNA polymerase II subunit G part_of IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 2:9,004,388...9,008,631
Ensembl chr 2:9,003,781...9,017,779
JBrowse link
G POLR2H RNA polymerase II, I and III subunit H part_of IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr13:122,250,087...122,256,201
Ensembl chr13:122,249,909...122,256,195
JBrowse link
G POLR2I RNA polymerase II subunit I part_of IBA
ISS
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000024 NCBI chr 6:45,480,785...45,482,318
Ensembl chr 6:45,479,552...45,481,992
JBrowse link
G POLR2J RNA polymerase II subunit J part_of IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000117 NCBI chr 3:9,812,746...9,816,657 JBrowse link
G POLR2K RNA polymerase II, I and III subunit K part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:36,849,729...36,852,622
Ensembl chr 4:36,845,242...36,852,610
JBrowse link
G POLR2M RNA polymerase II subunit M part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:114,256,457...114,266,862
Ensembl chr 1:114,256,460...114,266,875
JBrowse link
transcription factor TFIIA complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2A1 general transcription factor IIA subunit 1 part_of
located_in
IBA
ISO
(PMID:21873635)
(PMID:8626665)
GO_Central
ComplexPortal
PMID:8626665 PMID:21873635 NCBI chr 7:103,963,863...104,009,318
Ensembl chr 7:103,963,248...104,009,104
JBrowse link
G GTF2A1L general transcription factor IIA subunit 1 like part_of IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 3:91,991,690...92,083,062
Ensembl chr 3:91,896,300...92,078,318
JBrowse link
G GTF2A2 general transcription factor IIA subunit 2 part_of
located_in
IBA
ISO
IEA
(PMID:21873635)
(PMID:8626665)
GO_Central
ComplexPortal
InterPro
PMID:8626665 PMID:21873635 GO_REF:0000002 NCBI chr 1:112,371,276...112,399,541
Ensembl chr 1:112,344,223...112,399,541
JBrowse link
G TBP TATA-box binding protein part_of ISO (PMID:7724559) BHF-UCL PMID:7724559 NCBI chr 1:5,669...23,675 JBrowse link
G TBPL1 TATA-box binding protein like 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:29,899,956...29,936,773
Ensembl chr 1:29,899,957...29,936,718
JBrowse link
transcription factor TFIID complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:51,734,318...51,757,508
Ensembl chr 6:51,734,319...51,779,624
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit part_of IEA Ensembl GO_REF:0000107 NCBI chr15:25,189,644...25,224,381
Ensembl chr15:25,189,663...25,228,066
JBrowse link
G GTF2A1 general transcription factor IIA subunit 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 7:103,963,863...104,009,318
Ensembl chr 7:103,963,248...104,009,104
JBrowse link
G GTF2A2 general transcription factor IIA subunit 2 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chr 1:112,371,276...112,399,541
Ensembl chr 1:112,344,223...112,399,541
JBrowse link
G GTF2B general transcription factor IIB part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:127,522,802...127,559,605
Ensembl chr 4:127,522,524...127,571,378
JBrowse link
G GTF2E1 general transcription factor IIE subunit 1 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chr13:139,565,891...139,609,483 JBrowse link
G GTF2E2 general transcription factor IIE subunit 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr15:54,444,480...54,525,566
Ensembl chr15:54,444,470...54,531,213
JBrowse link
G GTF2F1 general transcription factor IIF subunit 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 2:72,687,612...72,698,274
Ensembl chr 2:72,687,790...72,701,971
JBrowse link
G GTF2H3 general transcription factor IIH subunit 3 part_of IEA Ensembl GO_REF:0000107 NCBI chr14:29,335,715...29,355,465
Ensembl chr14:29,335,580...29,355,436
JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chr 7:23,398,414...23,404,268 JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:8,928,280...8,935,030
Ensembl chr 1:8,917,240...8,934,919
JBrowse link
G LOC110259058 transcription initiation factor TFIID subunit 11 pseudogene part_of IBA (PMID:21873635) GO_Central PMID:21873635
G TAF1 TATA-box binding protein associated factor 1 part_of
located_in
IEA
ISO
(PMID:23332750) UniProt
ComplexPortal
PMID:23332750 GO_REF:0000104 NCBI chr  X:57,382,211...57,466,700
Ensembl chr  X:57,382,354...57,466,697
JBrowse link
G TAF10 TATA-box binding protein associated factor 10 part_of
located_in
IBA
ISO
(PMID:21873635)
(PMID:23332750)
GO_Central
ComplexPortal
PMID:21873635 PMID:23332750 NCBI chr 9:3,144,262...3,145,702
Ensembl chr 9:3,144,277...3,145,720
JBrowse link
G TAF11 TATA-box binding protein associated factor 11 part_of
located_in
IBA
ISO
IEA
(PMID:21873635)
(PMID:23332750)
GO_Central
ComplexPortal
InterPro
PMID:21873635 PMID:23332750 GO_REF:0000002 NCBI chr 7:30,799,992...30,811,771
Ensembl chr 7:30,799,965...30,811,768
JBrowse link
G TAF12 TATA-box binding protein associated factor 12 part_of
located_in
IEA
ISO
IBA
(PMID:23332750)
(PMID:21873635)
InterPro
ComplexPortal
GO_Central
PMID:21873635 PMID:23332750 GO_REF:0000002 NCBI chr 6:85,618,679...85,643,087
Ensembl chr 6:85,618,688...85,643,076
JBrowse link
G TAF13 TATA-box binding protein associated factor 13 part_of
located_in
IBA
ISO
IEA
(PMID:21873635)
(PMID:23332750)
GO_Central
ComplexPortal
Ensembl
PMID:21873635 PMID:23332750 GO_REF:0000107 NCBI chr 4:110,980,816...110,991,941
Ensembl chr 4:110,971,573...110,992,019
JBrowse link
G TAF2 TATA-box binding protein associated factor 2 part_of
located_in
IEA
ISO
IBA
(PMID:23332750)
(PMID:21873635)
InterPro
ComplexPortal
GO_Central
PMID:21873635 PMID:23332750 GO_REF:0000002 NCBI chr 4:19,180,215...19,267,416
Ensembl chr 4:19,180,280...19,278,592
JBrowse link
G TAF3 TATA-box binding protein associated factor 3 part_of
located_in
IEA
ISO
IBA
(PMID:23332750)
(PMID:21873635)
Ensembl
ComplexPortal
GO_Central
PMID:21873635 PMID:23332750 GO_REF:0000107 NCBI chr10:63,422,184...63,576,400
Ensembl chr10:63,422,186...63,576,378
JBrowse link
G TAF4 TATA-box binding protein associated factor 4 part_of
located_in
IBA
ISO
(PMID:21873635)
(PMID:23332750)
GO_Central
ComplexPortal
PMID:21873635 PMID:23332750 NCBI chr17:61,465,820...61,529,963
Ensembl chr17:61,465,822...61,529,890
JBrowse link
G TAF4B TATA-box binding protein associated factor 4b part_of IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 6:110,855,636...110,972,798
Ensembl chr 6:110,855,636...110,971,994
JBrowse link
G TAF5 TATA-box binding protein associated factor 5 part_of
located_in
IBA
ISO
(PMID:21873635)
(PMID:23332750)
GO_Central
ComplexPortal
PMID:21873635 PMID:23332750 NCBI chr14:114,304,563...114,321,624
Ensembl chr14:114,304,557...114,339,770
JBrowse link
G TAF5L TATA-box binding protein associated factor 5 like NOT|part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:60,254,502...60,286,368
Ensembl chr14:60,223,432...60,302,958
JBrowse link
G TAF6 TATA-box binding protein associated factor 6 part_of
located_in
IBA
ISO
IEA
(PMID:21873635)
(PMID:23332750)
GO_Central
ComplexPortal
Ensembl
PMID:21873635 PMID:23332750 GO_REF:0000107 NCBI chr 3:8,017,675...8,026,982
Ensembl chr 3:8,017,674...8,026,972
JBrowse link
G TAF6L TATA-box binding protein associated factor 6 like part_of IEA InterPro GO_REF:0000002 NCBI chr 2:8,983,823...8,999,990
Ensembl chr 2:8,983,825...9,000,122
JBrowse link
G TAF7 TATA-box binding protein associated factor 7 part_of
located_in
IBA
ISO
(PMID:21873635)
(PMID:23332750)
GO_Central
ComplexPortal
PMID:21873635 PMID:23332750 NCBI chr 2:142,949,271...142,952,611
Ensembl chr 2:142,947,310...142,952,507
JBrowse link
G TAF7L TATA-box binding protein associated factor 7 like part_of IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr  X:82,930,258...82,951,065
Ensembl chr  X:82,930,264...82,951,042
JBrowse link
G TAF8 TATA-box binding protein associated factor 8 part_of
located_in
IEA
ISO
IBA
(PMID:23332750)
(PMID:21873635)
InterPro
ComplexPortal
GO_Central
PMID:21873635 PMID:23332750 GO_REF:0000002 NCBI chr 7:37,179,270...37,209,588
Ensembl chr 7:37,180,827...37,210,663
JBrowse link
G TAF9 TATA-box binding protein associated factor 9 part_of
located_in
IBA
ISO
(PMID:21873635)
(PMID:23332750)
GO_Central
ComplexPortal
PMID:21873635 PMID:23332750 NCBI chr16:47,494,841...47,499,568
Ensembl chr16:47,488,941...47,499,542
JBrowse link
G TAF9B TATA-box binding protein associated factor 9b part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:62,214,331...62,228,782
Ensembl chr  X:62,207,464...62,229,021
JBrowse link
G TBP TATA-box binding protein located_in
part_of
ISO (PMID:23332750)
(PMID:14580349), (PMID:27007846), (PMID:27193682), (PMID:29111974), (PMID:7729427)
RGD
ComplexPortal
UniProt
PMID:7729427 PMID:7980586 PMID:14580349 PMID:23332750 PMID:27007846 More... RGD:2306552 NCBI chr 1:5,669...23,675 JBrowse link
G TCEA1 transcription elongation factor A1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:77,109,555...77,138,324
Ensembl chr 4:77,109,507...77,138,362
JBrowse link
transcription factor TFIIE complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2E2 general transcription factor IIE subunit 2 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:54,444,480...54,525,566
Ensembl chr15:54,444,470...54,531,213
JBrowse link
transcription factor TFIIF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2F1 general transcription factor IIF subunit 1 part_of
located_in
IBA
ISO
(PMID:21873635)
(PMID:11183778)
GO_Central
ComplexPortal
PMID:11183778 PMID:21873635 NCBI chr 2:72,687,612...72,698,274
Ensembl chr 2:72,687,790...72,701,971
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 part_of
located_in
IBA
ISO
IEA
(PMID:21873635)
(PMID:11183778)
GO_Central
ComplexPortal
Ensembl
InterPro
PMID:11183778 PMID:21873635 GO_REF:0000002 GO_REF:0000107 NCBI chr11:21,987,410...22,144,921
Ensembl chr11:21,983,822...22,144,954
JBrowse link
transcription factor TFIIH holo complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNH cyclin H part_of ISO (PMID:9852112) UniProt PMID:9852112 NCBI chr 2:94,980,938...95,019,053
Ensembl chr 2:94,980,940...95,018,726
JBrowse link
G CDK7 cyclin dependent kinase 7 part_of ISO (PMID:9852112) RGD
UniProt
PMID:7553866 PMID:9852112 RGD:9590319 NCBI chr16:47,410,136...47,445,795
Ensembl chr16:47,410,144...47,449,356
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:51,734,318...51,757,508
Ensembl chr 6:51,734,319...51,779,624
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit part_of IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr15:25,189,644...25,224,381
Ensembl chr15:25,189,663...25,228,066
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 ISO RGD PMID:7553866 RGD:9590319 NCBI chr11:21,987,410...22,144,921
Ensembl chr11:21,983,822...22,144,954
JBrowse link
G GTF2H1 general transcription factor IIH subunit 1 part_of IBA
ISO
(PMID:21873635) GO_Central
RGD
PMID:7553866 PMID:21873635 RGD:9590319 NCBI chr 2:40,857,720...40,900,591
Ensembl chr 2:40,857,723...40,901,123
JBrowse link
G GTF2H2 general transcription factor IIH subunit 2 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:47,658,015...47,700,926 JBrowse link
G GTF2H3 general transcription factor IIH subunit 3 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:29,335,715...29,355,465
Ensembl chr14:29,335,580...29,355,436
JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 part_of ISO (PMID:9852112) UniProt PMID:9852112 NCBI chr 7:23,398,414...23,404,268 JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 part_of IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr 1:8,928,280...8,935,030
Ensembl chr 1:8,917,240...8,934,919
JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase part_of IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr 1:189,690,343...189,908,144
Ensembl chr 1:189,690,354...189,910,589
JBrowse link
transcription factor TFIIK complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNH cyclin H part_of IBA
IEA
(PMID:21873635) GO_Central
Ensembl
InterPro
PMID:21873635 GO_REF:0000002 GO_REF:0000107 NCBI chr 2:94,980,938...95,019,053
Ensembl chr 2:94,980,940...95,018,726
JBrowse link
G CDK7 cyclin dependent kinase 7 part_of IEA
IBA
(PMID:21873635) InterPro
GO_Central
Ensembl
PMID:21873635 GO_REF:0000002 GO_REF:0000107 NCBI chr16:47,410,136...47,445,795
Ensembl chr16:47,410,144...47,449,356
JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:189,690,343...189,908,144
Ensembl chr 1:189,690,354...189,910,589
JBrowse link
transcription factor TFTC complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KAT2A lysine acetyltransferase 2A part_of IEA Ensembl GO_REF:0000107 NCBI chr12:20,638,493...20,647,464
Ensembl chr12:20,638,493...20,647,463
JBrowse link
G SUPT3H SPT3 homolog, SAGA and STAGA complex component part_of IEA Ensembl GO_REF:0000107 NCBI chr 7:39,763,303...40,161,123
Ensembl chr 7:39,751,927...40,161,114
JBrowse link
G TADA3 transcriptional adaptor 3 part_of IEA Ensembl GO_REF:0000107 NCBI chr13:66,067,623...66,080,170
Ensembl chr13:66,067,632...66,080,023
JBrowse link
G TAF10 TATA-box binding protein associated factor 10 part_of IEA Ensembl GO_REF:0000107 NCBI chr 9:3,144,262...3,145,702
Ensembl chr 9:3,144,277...3,145,720
JBrowse link
G TAF12 TATA-box binding protein associated factor 12 part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:85,618,679...85,643,087
Ensembl chr 6:85,618,688...85,643,076
JBrowse link
G TAF2 TATA-box binding protein associated factor 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:19,180,215...19,267,416
Ensembl chr 4:19,180,280...19,278,592
JBrowse link
G TAF4 TATA-box binding protein associated factor 4 part_of IEA Ensembl GO_REF:0000107 NCBI chr17:61,465,820...61,529,963
Ensembl chr17:61,465,822...61,529,890
JBrowse link
G TAF5 TATA-box binding protein associated factor 5 part_of IEA Ensembl GO_REF:0000107 NCBI chr14:114,304,563...114,321,624
Ensembl chr14:114,304,557...114,339,770
JBrowse link
G TAF5L TATA-box binding protein associated factor 5 like part_of IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr14:60,254,502...60,286,368
Ensembl chr14:60,223,432...60,302,958
JBrowse link
G TAF6 TATA-box binding protein associated factor 6 part_of IEA Ensembl GO_REF:0000107 NCBI chr 3:8,017,675...8,026,982
Ensembl chr 3:8,017,674...8,026,972
JBrowse link
G TAF7 TATA-box binding protein associated factor 7 part_of IEA Ensembl GO_REF:0000107 NCBI chr 2:142,949,271...142,952,611
Ensembl chr 2:142,947,310...142,952,507
JBrowse link
G TAF9 TATA-box binding protein associated factor 9 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:47,494,841...47,499,568
Ensembl chr16:47,488,941...47,499,542
JBrowse link
G TAF9B TATA-box binding protein associated factor 9b part_of IEA Ensembl GO_REF:0000107 NCBI chr  X:62,214,331...62,228,782
Ensembl chr  X:62,207,464...62,229,021
JBrowse link
G TRRAP transformation/transcription domain associated protein part_of ISO (PMID:10373431) UniProt PMID:10373431 NCBI chr 3:5,903,205...6,029,343
Ensembl chr 3:5,909,237...6,029,340
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17057
    cellular anatomical entity 16926
      nucleoplasm 3312
        RNA polymerase II, holoenzyme 72
          Cdc73/Paf1 complex 8
          RNA polymerase II, core complex 14
          transcription factor TFIIA complex 5
          transcription factor TFIID complex + 32
          transcription factor TFIIE complex 1
          transcription factor TFIIF complex 2
          transcription factor TFIIH holo complex + 11
          transcription factor TFTC complex 14
Path 2
Term Annotations click to browse term
  cellular_component 17057
    cellular anatomical entity 16926
      organelle 11616
        membrane-bounded organelle 10689
          intracellular membrane-bounded organelle 10213
            nucleus 6467
              nuclear protein-containing complex 1194
                nuclear DNA-directed RNA polymerase complex 96
                  RNA polymerase II, holoenzyme 72
                    Cdc73/Paf1 complex 8
                    RNA polymerase II, core complex 14
                    transcription factor TFIIA complex 5
                    transcription factor TFIID complex + 32
                    transcription factor TFIIE complex 1
                    transcription factor TFIIF complex 2
                    transcription factor TFIIH holo complex + 11
                    transcription factor TFTC complex 14
paths to the root