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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA polymerase II, holoenzyme
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Accession:GO:0016591 term browser browse the term
Definition:A nuclear DNA-directed RNA polymerase complex containing an RNA polymerase II core enzyme as well as additional proteins and transcription factor complexes, that are capable of promoter recognition and transcription initiation from an RNA polymerase II promoter in vivo. These additional components may include general transcription factor complexes TFIIA, TFIID, TFIIE, TFIIF, or TFIIH, as well as Mediator, SWI/SNF, GCN5, or SRBs and confer the ability to recognize promoters.
Synonyms:exact_synonym: DNA-directed RNA polymerase II, holoenzyme



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RNA polymerase II, holoenzyme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo6 myosin VI part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:80,164,976...80,311,729
Ensembl chr 9:80,165,031...80,311,729
JBrowse link
G Myzap myocardial zonula adherens protein part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:71,504,347...71,592,360
Ensembl chr 9:71,504,347...71,592,360
JBrowse link
G Polr2m polymerase (RNA) II (DNA directed) polypeptide M part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 9:71,478,437...71,485,983
Ensembl chr 9:71,478,437...71,485,935
JBrowse link
G Recql5 RecQ protein-like 5 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:115,892,595...115,933,514
Ensembl chr11:115,892,595...115,933,477
JBrowse link
G Rpap2 RNA polymerase II associated protein 2 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:107,597,373...107,661,853
Ensembl chr 5:107,597,373...107,661,838
JBrowse link
G Rprd1a regulation of nuclear pre-mRNA domain containing 1A part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr18:24,484,960...24,530,235
Ensembl chr18:24,484,960...24,530,204
JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B part_of IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 2:158,028,475...158,078,207
Ensembl chr 2:158,028,497...158,132,297
JBrowse link
G Rprd2 regulation of nuclear pre-mRNA domain containing 2 part_of IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 3:95,759,871...95,819,744
Ensembl chr 3:95,760,341...95,818,863
JBrowse link
Cdc73/Paf1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73, Paf1/RNA polymerase II complex component part_of IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 1:143,603,276...143,702,893
Ensembl chr 1:143,598,800...143,702,893
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component part_of ISO
IBA
IPI
(MGI:6201960|PMID:21873635)
(MGI:6203683|PMID:27749823)
MGI
GO_Central
UniProt
PMID:21873635 PMID:27749823 GO_REF:0000096 MGI:4834177 MGI:6201960 MGI:6203683 NCBI chr 7:111,028,951...111,056,377
Ensembl chr 7:111,028,951...111,056,377
JBrowse link
G Leo1 Leo1, Paf1/RNA polymerase II complex component part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:75,441,015...75,466,432
Ensembl chr 9:75,441,524...75,466,432
JBrowse link
G Paf1 Paf1, RNA polymerase II complex component part_of IPI
ISO
IBA
(MGI:6203683|PMID:27749823)
(MGI:6201960|PMID:21873635)
UniProt
MGI
GO_Central
PMID:21873635 PMID:27749823 GO_REF:0000096 MGI:4834177 MGI:6201960 MGI:6203683 NCBI chr 7:28,392,996...28,399,383
Ensembl chr 7:28,392,951...28,399,388
JBrowse link
G Pex2 peroxisomal biogenesis factor 2 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:5,560,188...5,578,596
Ensembl chr 3:5,560,188...5,576,239
JBrowse link
G Rtf1 RTF1, Paf1/RNA polymerase II complex component part_of IPI
ISO
IBA
(MGI:6203683|PMID:27749823)
(MGI:6201960|PMID:21873635)
UniProt
MGI
GO_Central
PMID:21873635 PMID:27749823 GO_REF:0000096 MGI:4834177 MGI:6201960 MGI:6203683 NCBI chr 2:119,675,068...119,735,407
Ensembl chr 2:119,675,068...119,735,407
JBrowse link
G Setd5 SET domain containing 5 part_of IDA (MGI:5812827|PMID:27864380) UniProt PMID:27864380 MGI:5812827 NCBI chr 6:113,077,262...113,153,432
Ensembl chr 6:113,077,365...113,153,435
JBrowse link
G Wdr61 WD repeat domain 61 part_of IPI
IBA
ISO
(MGI:6203683|PMID:27749823)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
MGI
PMID:21873635 PMID:27749823 GO_REF:0000096 MGI:4834177 MGI:6201960 MGI:6203683 NCBI chr 9:54,717,153...54,734,549
Ensembl chr 9:54,714,735...54,734,519
JBrowse link
core TFIIH complex portion of holo TFIIH complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2h2 general transcription factor II H, polypeptide 2 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:100,460,218...100,492,609
Ensembl chr13:100,460,218...100,492,579
JBrowse link
G Gtf2h3 general transcription factor IIH, polypeptide 3 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:124,579,148...124,597,680
Ensembl chr 5:124,579,140...124,597,680
JBrowse link
G Gtf2h4 general transcription factor II H, polypeptide 4 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:35,667,728...35,673,750
Ensembl chr17:35,667,730...35,673,739
JBrowse link
RNA polymerase II, core complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myzap myocardial zonula adherens protein part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:71,504,347...71,592,360
Ensembl chr 9:71,504,347...71,592,360
JBrowse link
G Polr2a polymerase (RNA) II (DNA directed) polypeptide A part_of IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr11:69,733,997...69,758,633
Ensembl chr11:69,733,997...69,758,637
JBrowse link
G Polr2b polymerase (RNA) II (DNA directed) polypeptide B part_of IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 5:77,310,484...77,349,328
Ensembl chr 5:77,310,147...77,349,324
JBrowse link
G Polr2c polymerase (RNA) II (DNA directed) polypeptide C part_of IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 8:94,857,450...94,864,242
Ensembl chr 8:94,857,450...94,873,535
JBrowse link
G Polr2d polymerase (RNA) II (DNA directed) polypeptide D part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr18:31,789,125...31,796,709
Ensembl chr18:31,789,159...31,796,701
JBrowse link
G Polr2e polymerase (RNA) II (DNA directed) polypeptide E part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr10:80,035,953...80,039,659
Ensembl chr10:80,035,949...80,039,795
JBrowse link
G Polr2f polymerase (RNA) II (DNA directed) polypeptide F part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr15:79,141,325...79,151,774
Ensembl chr15:79,141,009...79,151,774
JBrowse link
G Polr2g polymerase (RNA) II (DNA directed) polypeptide G part_of IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr19:8,793,129...8,798,557
Ensembl chr19:8,793,127...8,798,577
JBrowse link
G Polr2h polymerase (RNA) II (DNA directed) polypeptide H part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr16:20,717,826...20,722,272
Ensembl chr16:20,717,665...20,722,267
JBrowse link
G Polr2i polymerase (RNA) II (DNA directed) polypeptide I part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 7:30,232,074...30,233,387
Ensembl chr 7:30,231,948...30,233,390
JBrowse link
G Polr2j polymerase (RNA) II (DNA directed) polypeptide J part_of ISO
IDA
IBA
(MGI:86690|PMID:9099876)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:9099876 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 MGI:86690 NCBI chr 5:136,116,691...136,122,947
Ensembl chr 5:136,116,631...136,122,947
JBrowse link
G Polr2k polymerase (RNA) II (DNA directed) polypeptide K part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr15:36,174,010...36,177,012
Ensembl chr15:36,174,010...36,177,010
JBrowse link
G Polr2l polymerase (RNA) II (DNA directed) polypeptide L part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 7:141,471,860...141,475,153
Ensembl chr 7:141,471,860...141,475,132
JBrowse link
G Polr2m polymerase (RNA) II (DNA directed) polypeptide M part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:71,478,437...71,485,983
Ensembl chr 9:71,478,437...71,485,935
JBrowse link
transcription factor TFIIA complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2a1 general transcription factor II A, 1 part_of
located_in
IBA
ISO
IDA
(MGI:6201960|PMID:21873635)
(MGI:3583836|PMID:15927180)
GO_Central
MGI
PMID:15927180 PMID:21873635 GO_REF:0000096 MGI:3583836 MGI:4834177 MGI:6201960 NCBI chr12:91,555,262...91,590,487
Ensembl chr12:91,555,262...91,590,487
JBrowse link
G Gtf2a1l general transcription factor IIA, 1-like part_of IDA
IBA
(MGI:3583836|PMID:15927180)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:15927180 PMID:21873635 MGI:3583836 MGI:6201960 NCBI chr17:88,665,493...88,715,157
Ensembl chr17:88,668,660...88,715,152
JBrowse link
G Gtf2a2 general transcription factor II A, 2 part_of
located_in
IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 9:70,012,548...70,022,866
Ensembl chr 9:70,012,550...70,022,866
JBrowse link
G Tbp TATA box binding protein part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:15,499,888...15,517,427
Ensembl chr17:15,499,888...15,528,379
JBrowse link
G Tbpl1 TATA box binding protein-like 1 part_of IDA (MGI:3583836|PMID:15927180) MGI PMID:15927180 MGI:3583836 NCBI chr10:22,703,877...22,732,666
Ensembl chr10:22,703,879...22,731,938
JBrowse link
transcription factor TFIID complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 excision repair cross-complementing rodent repair deficiency, complementation group 2 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:19,382,017...19,395,694
Ensembl chr 7:19,382,010...19,395,694
JBrowse link
G Ercc3 excision repair cross-complementing rodent repair deficiency, complementation group 3 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr18:32,240,304...32,270,151
Ensembl chr18:32,240,300...32,270,151
JBrowse link
G Gtf2a1 general transcription factor II A, 1 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:91,555,262...91,590,487
Ensembl chr12:91,555,262...91,590,487
JBrowse link
G Gtf2a2 general transcription factor II A, 2 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:70,012,548...70,022,866
Ensembl chr 9:70,012,550...70,022,866
JBrowse link
G Gtf2b general transcription factor IIB part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:142,765,247...142,783,606
Ensembl chr 3:142,765,045...142,783,606
JBrowse link
G Gtf2e1 general transcription factor II E, polypeptide 1 (alpha subunit) part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:37,509,796...37,539,789
Ensembl chr16:37,509,790...37,539,789
JBrowse link
G Gtf2e2 general transcription factor II E, polypeptide 2 (beta subunit) part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:33,731,914...33,777,173
Ensembl chr 8:33,731,833...33,777,173
JBrowse link
G Gtf2f1 general transcription factor IIF, polypeptide 1 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:57,003,401...57,011,394
Ensembl chr17:57,003,405...57,011,288
JBrowse link
G Gtf2h2 general transcription factor II H, polypeptide 2 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:100,460,218...100,492,609
Ensembl chr13:100,460,218...100,492,579
JBrowse link
G Gtf2h3 general transcription factor IIH, polypeptide 3 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:124,579,148...124,597,680
Ensembl chr 5:124,579,140...124,597,680
JBrowse link
G Gtf2h4 general transcription factor II H, polypeptide 4 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:35,667,728...35,673,750
Ensembl chr17:35,667,730...35,673,739
JBrowse link
G Gtf2h5 general transcription factor IIH, polypeptide 5 part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr17:6,079,828...6,085,488
Ensembl chr17:6,079,786...6,086,517
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 part_of
located_in
IBA
ISO
(MGI:6201960|PMID:21873635)
(MGI:2679136|PMID:14580349)
GO_Central
MGI
PMID:14580349 PMID:21873635 GO_REF:0000096 MGI:2679136 MGI:4834177 MGI:6201960 NCBI chr  X:101,527,572...101,601,789
Ensembl chr  X:101,532,734...101,601,789
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 part_of
located_in
TAS
ISO
IBA
(MGI:1344821|PMID:10469660)
(MGI:2679136|PMID:14580349)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:10469660 PMID:14580349 PMID:21873635 GO_REF:0000096 MGI:1344821 MGI:2679136 MGI:4834177 MGI:6201960 NCBI chr 7:105,742,894...105,744,375
Ensembl chr 7:105,739,393...105,744,361
JBrowse link
G Taf11 TATA-box binding protein associated factor 11 part_of
located_in
IBA
ISO
(MGI:6201960|PMID:21873635)
(MGI:2679136|PMID:14580349)
GO_Central
MGI
PMID:14580349 PMID:21873635 GO_REF:0000096 MGI:2679136 MGI:4834177 MGI:6201960 NCBI chr17:27,901,122...27,909,343
Ensembl chr17:27,901,122...27,909,844
JBrowse link
G Taf12 TATA-box binding protein associated factor 12 part_of
located_in
IBA
ISO
(MGI:6201960|PMID:21873635)
(MGI:2679136|PMID:14580349)
GO_Central
MGI
PMID:14580349 PMID:21873635 GO_REF:0000096 MGI:2679136 MGI:4834177 MGI:6201960 NCBI chr 4:132,274,355...132,293,329
Ensembl chr 4:132,274,375...132,295,766
JBrowse link
G Taf13 TATA-box binding protein associated factor 13 part_of
located_in
IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 3:108,571,699...108,582,068
Ensembl chr 3:108,571,698...108,583,222
JBrowse link
G Taf2 TATA-box binding protein associated factor 2 part_of
located_in
IBA
ISO
(MGI:6201960|PMID:21873635)
(MGI:2679136|PMID:14580349)
GO_Central
MGI
PMID:14580349 PMID:21873635 GO_REF:0000096 MGI:2679136 MGI:4834177 MGI:6201960 NCBI chr15:55,015,129...55,072,187
Ensembl chr15:55,015,131...55,072,152
JBrowse link
G Taf3 TATA-box binding protein associated factor 3 part_of
located_in
IBA
ISO
(MGI:6201960|PMID:21873635)
(MGI:2386188|PMID:11438666)
GO_Central
MGI
PMID:11438666 PMID:21873635 GO_REF:0000096 MGI:2386188 MGI:4834177 MGI:6201960 NCBI chr 2:9,914,552...10,048,609
Ensembl chr 2:9,914,552...10,048,596
JBrowse link
G Taf4 TATA-box binding protein associated factor 4 part_of
located_in
IBA
ISO
(MGI:6201960|PMID:21873635)
(MGI:2679136|PMID:14580349)
GO_Central
MGI
PMID:14580349 PMID:21873635 GO_REF:0000096 MGI:2679136 MGI:4834177 MGI:6201960 NCBI chr 2:179,912,146...179,976,646
Ensembl chr 2:179,912,152...179,976,646
JBrowse link
G Taf4b TATA-box binding protein associated factor 4b part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr18:14,783,201...14,960,424
Ensembl chr18:14,783,245...14,900,359
JBrowse link
G Taf5 TATA-box binding protein associated factor 5 part_of
located_in
IBA
ISO
(MGI:6201960|PMID:21873635)
(MGI:2679136|PMID:14580349)
GO_Central
MGI
PMID:14580349 PMID:21873635 GO_REF:0000096 MGI:2679136 MGI:4834177 MGI:6201960 NCBI chr19:47,067,748...47,083,479
Ensembl chr19:47,067,746...47,083,479
JBrowse link
G Taf5l TATA-box binding protein associated factor 5 like NOT|part_of IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 8:123,996,310...124,021,397
Ensembl chr 8:123,996,318...124,021,397
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 part_of
located_in
IBA
ISO
(MGI:6201960|PMID:21873635)
(MGI:2679136|PMID:14580349)
GO_Central
MGI
PMID:14580349 PMID:21873635 GO_REF:0000096 MGI:2679136 MGI:4834177 MGI:6201960 NCBI chr 5:138,178,617...138,187,451
Ensembl chr 5:138,178,617...138,187,451
JBrowse link
G Taf6l TATA-box binding protein associated factor 6 like part_of IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr19:8,774,354...8,786,417
Ensembl chr19:8,774,487...8,786,417
JBrowse link
G Taf7 TATA-box binding protein associated factor 7 part_of
located_in
IDA
ISO
IBA
(MGI:1342782|PMID:10438527)
(MGI:2679136|PMID:14580349)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:10438527 PMID:14580349 PMID:21873635 GO_REF:0000096 MGI:1342782 MGI:2679136 MGI:4834177 MGI:6201960 NCBI chr18:37,640,491...37,644,204
Ensembl chr18:37,640,491...37,644,204
JBrowse link
G Taf7l TATA-box binding protein associated factor 7 like part_of IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:134,460,116...134,476,505
Ensembl chr  X:134,460,118...134,476,490
JBrowse link
G Taf7l2 Taf7l2 part_of IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:116,111,664...116,113,917
Ensembl chr10:116,111,664...116,113,917
JBrowse link
G Taf8 TATA-box binding protein associated factor 8 part_of
located_in
IBA
ISO
(MGI:6201960|PMID:21873635)
(MGI:2679136|PMID:14580349)
GO_Central
MGI
PMID:14580349 PMID:21873635 GO_REF:0000096 MGI:2679136 MGI:4834177 MGI:6201960 NCBI chr17:47,483,364...47,502,321
Ensembl chr17:47,483,364...47,502,292
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 part_of
located_in
IBA
ISO
(MGI:6201960|PMID:21873635)
(MGI:2679136|PMID:14580349)
GO_Central
MGI
PMID:14580349 PMID:21873635 GO_REF:0000096 MGI:2679136 MGI:4834177 MGI:6201960 NCBI chr13:100,651,343...100,656,060
Ensembl chr13:100,651,579...100,656,060
Ensembl chr13:100,651,579...100,656,060
JBrowse link
G Taf9b TATA-box binding protein associated factor 9B part_of IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr  X:106,206,874...106,221,158
Ensembl chr  X:106,206,883...106,221,158
JBrowse link
G Tbp TATA box binding protein part_of
located_in
ISO (MGI:2679136|PMID:14580349) RGD
MGI
PMID:7980586 PMID:14580349 GO_REF:0000096 MGI:2679136 MGI:4417868 MGI:4834177 RGD:2306552 NCBI chr17:15,499,888...15,517,427
Ensembl chr17:15,499,888...15,528,379
JBrowse link
G Tcea1 transcription elongation factor A (SII) 1 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:4,857,694...4,897,909
Ensembl chr 1:4,857,814...4,897,909
JBrowse link
transcription factor TFIIE complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2e1 general transcription factor II E, polypeptide 1 (alpha subunit) part_of IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr16:37,509,796...37,539,789
Ensembl chr16:37,509,790...37,539,789
JBrowse link
G Gtf2e2 general transcription factor II E, polypeptide 2 (beta subunit) part_of IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 8:33,731,914...33,777,173
Ensembl chr 8:33,731,833...33,777,173
JBrowse link
transcription factor TFIIF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2f1 general transcription factor IIF, polypeptide 1 part_of
located_in
IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr17:57,003,401...57,011,394
Ensembl chr17:57,003,405...57,011,288
JBrowse link
G Gtf2f2 general transcription factor IIF, polypeptide 2 part_of
located_in
IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr14:75,896,928...76,010,865
Ensembl chr14:75,896,937...76,010,865
JBrowse link
transcription factor TFIIH holo complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnh cyclin H part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:85,189,377...85,213,731
Ensembl chr13:85,189,408...85,223,469
JBrowse link
G Cdk7 cyclin-dependent kinase 7 part_of ISO MGI
RGD
PMID:7553866 GO_REF:0000096 MGI:4417868 MGI:4834177 RGD:9590319 NCBI chr13:100,697,024...100,730,942
Ensembl chr13:100,702,631...100,730,939
JBrowse link
G Ercc2 excision repair cross-complementing rodent repair deficiency, complementation group 2 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:19,382,017...19,395,694
Ensembl chr 7:19,382,010...19,395,694
JBrowse link
G Ercc3 excision repair cross-complementing rodent repair deficiency, complementation group 3 part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr18:32,240,304...32,270,151
Ensembl chr18:32,240,300...32,270,151
JBrowse link
G Gtf2f2 general transcription factor IIF, polypeptide 2 part_of ISO RGD
MGI
PMID:7553866 GO_REF:0000096 MGI:4417868 RGD:9590319 NCBI chr14:75,896,928...76,010,865
Ensembl chr14:75,896,937...76,010,865
JBrowse link
G Gtf2h1 general transcription factor II H, polypeptide 1 part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
RGD
GO_Central
PMID:7553866 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:4834177 MGI:6201960 RGD:9590319 NCBI chr 7:46,796,094...46,823,800
Ensembl chr 7:46,796,103...46,823,800
JBrowse link
G Gtf2h2 general transcription factor II H, polypeptide 2 part_of IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr13:100,460,218...100,492,609
Ensembl chr13:100,460,218...100,492,579
JBrowse link
G Gtf2h3 general transcription factor IIH, polypeptide 3 part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 5:124,579,148...124,597,680
Ensembl chr 5:124,579,140...124,597,680
JBrowse link
G Gtf2h4 general transcription factor II H, polypeptide 4 part_of IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr17:35,667,728...35,673,750
Ensembl chr17:35,667,730...35,673,739
JBrowse link
G Gtf2h5 general transcription factor IIH, polypeptide 5 part_of IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr17:6,079,828...6,085,488
Ensembl chr17:6,079,786...6,086,517
JBrowse link
G Mnat1 menage a trois 1 part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr12:73,112,185...73,273,988
Ensembl chr12:73,123,717...73,273,988
JBrowse link
G Psmc5 protease (prosome, macropain) 26S subunit, ATPase 5 part_of ISO (MGI:893345|PMID:9173976) MGI PMID:9173976 MGI:893345 NCBI chr11:106,256,185...106,263,112
Ensembl chr11:106,256,154...106,263,120
JBrowse link
transcription factor TFIIK complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnh cyclin H part_of IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr13:85,189,377...85,213,731
Ensembl chr13:85,189,408...85,223,469
JBrowse link
G Cdk7 cyclin-dependent kinase 7 part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr13:100,697,024...100,730,942
Ensembl chr13:100,702,631...100,730,939
JBrowse link
G Mnat1 menage a trois 1 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:73,112,185...73,273,988
Ensembl chr12:73,123,717...73,273,988
JBrowse link
transcription factor TFTC complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kat2a K(lysine) acetyltransferase 2A part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:100,704,746...100,712,485
Ensembl chr11:100,704,746...100,712,465
JBrowse link
G Supt3 SPT3, SAGA and STAGA complex component part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:44,777,118...45,119,294
Ensembl chr17:44,777,152...45,119,290
JBrowse link
G Tada3 transcriptional adaptor 3 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:113,366,633...113,377,838
Ensembl chr 6:113,366,025...113,377,883
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:105,742,894...105,744,375
Ensembl chr 7:105,739,393...105,744,361
JBrowse link
G Taf12 TATA-box binding protein associated factor 12 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:132,274,355...132,293,329
Ensembl chr 4:132,274,375...132,295,766
JBrowse link
G Taf2 TATA-box binding protein associated factor 2 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:55,015,129...55,072,187
Ensembl chr15:55,015,131...55,072,152
JBrowse link
G Taf4 TATA-box binding protein associated factor 4 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:179,912,146...179,976,646
Ensembl chr 2:179,912,152...179,976,646
JBrowse link
G Taf5 TATA-box binding protein associated factor 5 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr19:47,067,748...47,083,479
Ensembl chr19:47,067,746...47,083,479
JBrowse link
G Taf5l TATA-box binding protein associated factor 5 like part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:123,996,310...124,021,397
Ensembl chr 8:123,996,318...124,021,397
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:138,178,617...138,187,451
Ensembl chr 5:138,178,617...138,187,451
JBrowse link
G Taf7 TATA-box binding protein associated factor 7 part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr18:37,640,491...37,644,204
Ensembl chr18:37,640,491...37,644,204
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 part_of ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr13:100,651,343...100,656,060
Ensembl chr13:100,651,579...100,656,060
Ensembl chr13:100,651,579...100,656,060
JBrowse link
G Taf9b TATA-box binding protein associated factor 9B part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:106,206,874...106,221,158
Ensembl chr  X:106,206,883...106,221,158
JBrowse link
G Trrap transformation/transcription domain-associated protein part_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:144,767,737...144,859,778
Ensembl chr 5:144,767,732...144,859,778
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 28382
    cellular anatomical entity 19152
      nucleoplasm 3638
        RNA polymerase II, holoenzyme 73
          Cdc73/Paf1 complex 8
          RNA polymerase II, core complex 14
          transcription factor TFIIA complex 5
          transcription factor TFIID complex + 33
          transcription factor TFIIE complex 2
          transcription factor TFIIF complex 2
          transcription factor TFIIH holo complex + 12
          transcription factor TFTC complex 14
Path 2
Term Annotations click to browse term
  cellular_component 28382
    cellular anatomical entity 19152
      organelle 13070
        membrane-bounded organelle 12165
          intracellular membrane-bounded organelle 11689
            nucleus 7351
              nuclear protein-containing complex 1273
                nuclear DNA-directed RNA polymerase complex 96
                  RNA polymerase II, holoenzyme 73
                    Cdc73/Paf1 complex 8
                    RNA polymerase II, core complex 14
                    transcription factor TFIIA complex 5
                    transcription factor TFIID complex + 33
                    transcription factor TFIIE complex 2
                    transcription factor TFIIF complex 2
                    transcription factor TFIIH holo complex + 12
                    transcription factor TFTC complex 14
paths to the root