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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA polymerase II, holoenzyme
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Accession:GO:0016591 term browser browse the term
Definition:A nuclear DNA-directed RNA polymerase complex containing an RNA polymerase II core enzyme as well as additional proteins and transcription factor complexes, that are capable of promoter recognition and transcription initiation from an RNA polymerase II promoter in vivo. These additional components may include general transcription factor complexes TFIIA, TFIID, TFIIE, TFIIF, or TFIIH, as well as Mediator, SWI/SNF, GCN5, or SRBs and confer the ability to recognize promoters.
Synonyms:exact_synonym: DNA-directed RNA polymerase II, holoenzyme



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RNA polymerase II, holoenzyme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GCOM1 GCOM1, MYZAP-POLR2M combined locus part_of IEA InterPro GO_REF:0000002 NCBI chr15:57,591,904...57,717,557
Ensembl chr15:57,591,908...57,714,745
JBrowse link
G MYO6 myosin VI part_of IDA (PMID:16949370) UniProt PMID:16949370 NCBI chr 6:75,749,203...75,919,537
Ensembl chr 6:75,749,192...75,919,537
JBrowse link
G POLR2M RNA polymerase II subunit M part_of IEA
IBA
IDA
(PMID:21873635)
(PMID:22231121)
InterPro
GO_Central
UniProt
PMID:21873635 PMID:22231121 GO_REF:0000002 NCBI chr15:57,706,714...57,717,557
Ensembl chr15:57,706,695...57,782,762
JBrowse link
G RECQL5 RecQ like helicase 5 part_of IDA (PMID:22231121) UniProt PMID:22231121 NCBI chr17:75,626,845...75,667,202
Ensembl chr17:75,626,845...75,667,189
JBrowse link
G RPAP2 RNA polymerase II associated protein 2 part_of IDA (PMID:22137580), (PMID:22231121) UniProt PMID:22137580 PMID:22231121 NCBI chr 1:92,299,050...92,402,056
Ensembl chr 1:92,299,059...92,402,056
JBrowse link
G RPRD1A regulation of nuclear pre-mRNA domain containing 1A part_of IDA
IBA
(PMID:22231121)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:22231121 NCBI chr18:35,982,385...36,067,576
Ensembl chr18:35,984,387...36,067,576
JBrowse link
G RPRD1B regulation of nuclear pre-mRNA domain containing 1B part_of IDA
IBA
(PMID:22231121)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:22231121 NCBI chr20:38,033,462...38,092,366
Ensembl chr20:38,033,725...38,127,780
JBrowse link
G RPRD2 regulation of nuclear pre-mRNA domain containing 2 part_of IDA
IBA
(PMID:22231121)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:22231121 NCBI chr 1:150,364,147...150,476,566
Ensembl chr 1:150,363,091...150,476,566
JBrowse link
Cdc73/Paf1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC73 cell division cycle 73 part_of IEA
IDA
IBA
(PMID:16307923), (PMID:18987311), (PMID:20178742)
(PMID:21873635)
InterPro
UniProt
GO_Central
PMID:16307923 PMID:18987311 PMID:20178742 PMID:21873635 GO_REF:0000002 NCBI chr 1:193,122,031...193,254,815
Ensembl chr 1:193,121,983...193,254,815
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component part_of IDA
IBA
(PMID:16307923), (PMID:20178742)
(PMID:21873635)
UniProt
GO_Central
PMID:16307923 PMID:20178742 PMID:21873635 NCBI chr11:10,751,246...10,779,746
Ensembl chr11:10,751,246...10,801,625
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component part_of IDA (PMID:16307923), (PMID:18987311), (PMID:20178742) UniProt PMID:16307923 PMID:18987311 PMID:20178742 NCBI chr15:51,938,024...51,971,798
Ensembl chr15:51,938,025...51,971,778
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component part_of IBA
IEA
IDA
(PMID:21873635)
(PMID:16307923), (PMID:20178742)
GO_Central
UniProt
PMID:16307923 PMID:20178742 PMID:21873635 GO_REF:0000117 NCBI chr19:39,385,629...39,391,106
Ensembl chr19:39,385,629...39,391,154
JBrowse link
G PEX2 peroxisomal biogenesis factor 2 part_of IBA
IDA
(PMID:21873635)
(PMID:18987311)
GO_Central
UniProt
PMID:18987311 PMID:21873635 NCBI chr 8:76,980,258...77,001,044
Ensembl chr 8:76,980,258...77,001,044
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component part_of IDA
IBA
(PMID:20178742)
(PMID:21873635)
UniProt
GO_Central
PMID:20178742 PMID:21873635 NCBI chr15:41,417,095...41,483,563
Ensembl chr15:41,408,408...41,483,563
JBrowse link
G SETD5 SET domain containing 5 colocalizes_with
part_of
ISS
ISO
(MGI:5812827|PMID:27864380) UniProtKB
UniProt
PMID:27864380 GO_REF:0000024 MGI:5812827 NCBI chr 3:9,397,615...9,478,154
Ensembl chr 3:9,397,615...9,479,240
JBrowse link
G WDR61 WD repeat domain 61 part_of IDA
IBA
(PMID:20178742)
(PMID:21873635)
UniProt
GO_Central
PMID:20178742 PMID:21873635 NCBI chr15:78,283,233...78,299,703
Ensembl chr15:78,277,835...78,299,703
JBrowse link
core TFIIH complex portion of holo TFIIH complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2H2 general transcription factor IIH subunit 2 part_of IDA (PMID:27193682) UniProt PMID:27193682 NCBI chr 5:71,035,124...71,109,113
Ensembl chr 5:71,032,670...71,067,689
JBrowse link
G GTF2H3 general transcription factor IIH subunit 3 part_of IDA (PMID:27193682) UniProt PMID:27193682 NCBI chr12:123,633,829...123,662,604
Ensembl chr12:123,633,739...123,662,604
JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 part_of IDA (PMID:27193682) UniProt PMID:27193682 NCBI chr 6:30,908,207...30,914,106
Ensembl chr 6:30,908,207...30,914,106
JBrowse link
RNA polymerase II, core complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLR2A RNA polymerase II subunit A part_of IDA
IBA
(PMID:9852112)
(PMID:21873635)
UniProt
GO_Central
PMID:9852112 PMID:21873635 NCBI chr17:7,484,366...7,514,616
Ensembl chr17:7,484,366...7,514,616
JBrowse link
G POLR2B RNA polymerase II subunit B part_of IBA
IDA
(PMID:21873635)
(PMID:9852112)
GO_Central
UniProt
PMID:9852112 PMID:21873635 NCBI chr 4:56,978,896...57,031,158
Ensembl chr 4:56,977,722...57,031,158
JBrowse link
G POLR2C RNA polymerase II subunit C part_of IDA
IBA
(PMID:9852112)
(PMID:21873635)
UniProt
GO_Central
PMID:9852112 PMID:21873635 NCBI chr16:57,462,679...57,472,009
Ensembl chr16:57,462,660...57,472,009
JBrowse link
G POLR2D RNA polymerase II subunit D part_of IBA
IDA
(PMID:21873635)
(PMID:9528765), (PMID:9852112)
GO_Central
UniProt
PMID:9528765 PMID:9852112 PMID:21873635 NCBI chr 2:127,843,553...127,858,155
Ensembl chr 2:127,843,553...127,858,155
JBrowse link
G POLR2E RNA polymerase II, I and III subunit E part_of IBA
IDA
(PMID:21873635)
(PMID:9852112)
GO_Central
UniProt
PMID:9852112 PMID:21873635 NCBI chr19:1,086,574...1,095,387
Ensembl chr19:1,086,574...1,095,380
JBrowse link
G POLR2F RNA polymerase II, I and III subunit F part_of IEA
IBA
IDA
(PMID:21873635)
(PMID:9852112)
InterPro
GO_Central
UniProt
PMID:9852112 PMID:21873635 GO_REF:0000002 NCBI chr22:37,953,663...38,041,915
Ensembl chr22:37,952,607...38,041,915
JBrowse link
G POLR2G RNA polymerase II subunit G part_of IBA
IDA
(PMID:21873635)
(PMID:9852112)
GO_Central
UniProt
PMID:9852112 PMID:21873635 NCBI chr11:62,761,580...62,766,710
Ensembl chr11:62,761,565...62,766,710
JBrowse link
G POLR2H RNA polymerase II, I and III subunit H part_of IDA
IBA
(PMID:9852112)
(PMID:21873635)
UniProt
GO_Central
PMID:9852112 PMID:21873635 NCBI chr 3:184,361,710...184,368,594
Ensembl chr 3:184,361,718...184,368,596
JBrowse link
G POLR2I RNA polymerase II subunit I part_of IBA
IDA
(PMID:21873635)
(PMID:9852112)
GO_Central
UniProt
PMID:9852112 PMID:21873635 NCBI chr19:36,113,709...36,114,875
Ensembl chr19:36,113,709...36,115,213
JBrowse link
G POLR2J RNA polymerase II subunit J part_of IBA
IEA
IDA
(PMID:21873635)
(PMID:9852112)
GO_Central
UniProt
PMID:9852112 PMID:21873635 GO_REF:0000117 NCBI chr 7:102,473,128...102,478,934
Ensembl chr 7:102,473,118...102,478,907
JBrowse link
G POLR2J2 RNA polymerase II subunit J2 part_of IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000117 NCBI chr 7:102,636,748...102,671,735
Ensembl chr 7:102,665,368...102,671,629
JBrowse link
G POLR2J3 RNA polymerase II subunit J3 part_of IEA
IBA
(PMID:21873635) InterPro
UniProt
GO_Central
PMID:21873635 GO_REF:0000002 GO_REF:0000117 NCBI chr 7:102,537,919...102,572,621
Ensembl chr 7:102,562,133...102,572,583
Ensembl chr 7:102,562,133...102,572,583
JBrowse link
G POLR2K RNA polymerase II, I and III subunit K part_of IBA
IDA
(PMID:21873635)
(PMID:9852112)
GO_Central
UniProt
PMID:9852112 PMID:21873635 NCBI chr 8:100,150,636...100,154,003
Ensembl chr 8:100,150,623...100,154,003
JBrowse link
G POLR2L RNA polymerase II, I and III subunit L part_of IBA
IDA
(PMID:21873635)
(PMID:9852112)
GO_Central
UniProt
PMID:9852112 PMID:21873635 NCBI chr11:839,721...842,529
Ensembl chr11:837,356...842,529
JBrowse link
G POLR2M RNA polymerase II subunit M part_of IPI (PMID:30190596) FlyBase PMID:30190596 NCBI chr15:57,706,714...57,717,557
Ensembl chr15:57,706,695...57,782,762
JBrowse link
transcription factor TFIIA complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2A1 general transcription factor IIA subunit 1 part_of
located_in
IBA
IPI
IEA
IDA
(PMID:21873635)
(PMID:8626665)
(PMID:7724559)
GO_Central
ComplexPortal
InterPro
BHF-UCL
PMID:7724559 PMID:8626665 PMID:21873635 GO_REF:0000002 NCBI chr14:81,175,452...81,221,390
Ensembl chr14:81,175,452...81,221,377
JBrowse link
G GTF2A1L general transcription factor IIA subunit 1 like part_of IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 2:48,617,856...48,679,604
Ensembl chr 2:48,617,798...48,733,148
JBrowse link
G GTF2A2 general transcription factor IIA subunit 2 part_of
located_in
IEA
IPI
IDA
IBA
(PMID:8626665)
(PMID:7724559), (PMID:7958899), (PMID:7958900)
(PMID:21873635)
InterPro
ComplexPortal
BHF-UCL
GO_Central
PMID:7724559 PMID:7958899 PMID:7958900 PMID:8626665 PMID:21873635 GO_REF:0000002 NCBI chr15:59,638,062...59,657,515
Ensembl chr15:59,638,062...59,657,541
JBrowse link
G STON1-GTF2A1L STON1-GTF2A1L readthrough part_of IEA InterPro GO_REF:0000002 NCBI chr 2:48,529,925...48,776,519
Ensembl chr 2:48,529,925...48,776,517
JBrowse link
G TBP TATA-box binding protein part_of IDA (PMID:7724559) BHF-UCL PMID:7724559 NCBI chr 6:170,554,369...170,572,859
Ensembl chr 6:170,554,302...170,572,870
JBrowse link
G TBPL1 TATA-box binding protein like 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:133,952,174...133,990,432
Ensembl chr 6:133,952,170...133,990,432
JBrowse link
transcription factor TFIID complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit part_of IDA (PMID:27193682) UniProt PMID:27193682 NCBI chr19:45,349,837...45,370,647
Ensembl chr19:45,349,837...45,370,918
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit part_of IDA (PMID:27193682) UniProt PMID:27193682 NCBI chr 2:127,257,290...127,294,166
Ensembl chr 2:127,257,290...127,294,166
JBrowse link
G GTF2A1 general transcription factor IIA subunit 1 part_of IDA (PMID:27193682) UniProt PMID:27193682 NCBI chr14:81,175,452...81,221,390
Ensembl chr14:81,175,452...81,221,377
JBrowse link
G GTF2A2 general transcription factor IIA subunit 2 part_of IDA (PMID:27193682) UniProt PMID:27193682 NCBI chr15:59,638,062...59,657,515
Ensembl chr15:59,638,062...59,657,541
JBrowse link
G GTF2B general transcription factor IIB part_of IDA (PMID:27193682) UniProt PMID:27193682 NCBI chr 1:88,852,633...88,891,944
Ensembl chr 1:88,852,633...88,891,944
JBrowse link
G GTF2E1 general transcription factor IIE subunit 1 part_of IDA (PMID:27193682) UniProt PMID:27193682 NCBI chr 3:120,742,744...120,783,069
Ensembl chr 3:120,742,637...120,783,069
JBrowse link
G GTF2E2 general transcription factor IIE subunit 2 part_of IDA (PMID:27193682) UniProt PMID:27193682 NCBI chr 8:30,578,318...30,658,241
Ensembl chr 8:30,578,318...30,658,236
JBrowse link
G GTF2F1 general transcription factor IIF subunit 1 part_of IDA (PMID:27193682) UniProt PMID:27193682 NCBI chr19:6,379,569...6,393,186
Ensembl chr19:6,379,572...6,393,981
JBrowse link
G GTF2H2 general transcription factor IIH subunit 2 part_of IDA (PMID:27193682) UniProt PMID:27193682 NCBI chr 5:71,035,124...71,109,113
Ensembl chr 5:71,032,670...71,067,689
JBrowse link
G GTF2H3 general transcription factor IIH subunit 3 part_of IDA (PMID:27193682) UniProt PMID:27193682 NCBI chr12:123,633,829...123,662,604
Ensembl chr12:123,633,739...123,662,604
JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 part_of IDA (PMID:27193682) UniProt PMID:27193682 NCBI chr 6:30,908,207...30,914,106
Ensembl chr 6:30,908,207...30,914,106
JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 part_of IDA
IBA
(PMID:27193682)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:27193682 NCBI chr 6:158,168,316...158,199,344
Ensembl chr 6:158,168,350...158,199,344
JBrowse link
G LINC02218 long intergenic non-protein coding RNA 2218 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:17,444,010...17,483,946
Ensembl chr 5:17,444,010...17,486,829
JBrowse link
G TAF1 TATA-box binding protein associated factor 1 part_of
located_in
IBA
IPI
IDA
TAS
(PMID:21873635)
(PMID:23332750)
(PMID:14580349), (PMID:24927529), (PMID:25412659), (PMID:27007846), (PMID:29111974), (PMID:8625415)
(PMID:12498690)
GO_Central
ComplexPortal
ParkinsonsUK-UCL
PMID:8625415 PMID:12498690 PMID:14580349 PMID:21873635 PMID:23332750 More... NCBI chr  X:71,366,220...71,530,525
Ensembl chr  X:71,366,222...71,532,374
JBrowse link
G TAF10 TATA-box binding protein associated factor 10 part_of
located_in
IDA
IPI
IBA
(PMID:14580349), (PMID:15099517), (PMID:29111974), (PMID:7729427), (PMID:7923369)
(PMID:23332750)
(PMID:21873635)
MGI
ComplexPortal
GO_Central
PMID:7729427 PMID:7923369 PMID:14580349 PMID:15099517 PMID:21873635 More... NCBI chr11:6,606,294...6,612,216
Ensembl chr11:6,606,294...6,612,539
JBrowse link
G TAF11 TATA-box binding protein associated factor 11 part_of
located_in
IBA
IPI
IEA
IDA
(PMID:21873635)
(PMID:23332750)
(PMID:14580349), (PMID:29111974), (PMID:7729427), (PMID:8670810)
GO_Central
ComplexPortal
InterPro
ARUK-UCL
PMID:7729427 PMID:8670810 PMID:14580349 PMID:21873635 PMID:23332750 More... GO_REF:0000002 NCBI chr 6:34,877,462...34,888,071
Ensembl chr 6:34,877,462...34,888,071
JBrowse link
G TAF11L11 TATA-box binding protein associated factor 11 like 11 part_of IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 5:17,604,177...17,605,377 JBrowse link
G TAF11L12 TATA-box binding protein associated factor 11 like 12 part_of IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 5:17,610,496...17,611,583 JBrowse link
G TAF11L13 TATA-box binding protein associated factor 11 like 13 part_of IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 5:17,632,088...17,632,684 JBrowse link
G TAF11L14 TATA-box binding protein associated factor 11 like 14 part_of IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 5:17,634,460...17,635,053 JBrowse link
G TAF11L2 TATA-box binding protein associated factor 11 like 2 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:17,498,231...17,498,827
Ensembl chr 5:17,498,231...17,498,827
JBrowse link
G TAF11L3 TATA-box binding protein associated factor 11 like 3 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:17,518,267...17,519,063
Ensembl chr 5:17,518,367...17,518,963
JBrowse link
G TAF11L4 TATA-box binding protein associated factor 11 like 4 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:17,521,701...17,522,497
Ensembl chr 5:17,521,801...17,522,397
JBrowse link
G TAF11L5 TATA-box binding protein associated factor 11 like 5 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:17,525,135...17,525,931
Ensembl chr 5:17,525,235...17,525,831
JBrowse link
G TAF11L6 TATA-box binding protein associated factor 11 like 6 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:17,528,569...17,529,365
Ensembl chr 5:17,528,669...17,529,265
JBrowse link
G TAF11L9 TATA-box binding protein associated factor 11 like 9 part_of IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 5:17,593,798...17,594,394 JBrowse link
G TAF12 TATA-box binding protein associated factor 12 part_of
located_in
IBA
IPI
IDA
(PMID:21873635)
(PMID:23332750)
(PMID:14580349), (PMID:29111974)
GO_Central
ComplexPortal
MGI
PMID:14580349 PMID:21873635 PMID:23332750 PMID:29111974 NCBI chr 1:28,602,850...28,648,707
Ensembl chr 1:28,589,323...28,643,085
JBrowse link
G TAF13 TATA-box binding protein associated factor 13 part_of
located_in
IDA
IPI
IBA
NAS
(PMID:29111974), (PMID:7729427)
(PMID:23332750)
(PMID:21873635)
(PMID:9695952)
ARUK-UCL
ComplexPortal
GO_Central
UniProt
PMID:7729427 PMID:9695952 PMID:21873635 PMID:23332750 PMID:29111974 NCBI chr 1:109,064,140...109,076,003
Ensembl chr 1:109,062,486...109,076,003
JBrowse link
G TAF1L TATA-box binding protein associated factor 1 like part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:32,629,454...32,635,669
Ensembl chr 9:32,629,454...32,635,669
JBrowse link
G TAF2 TATA-box binding protein associated factor 2 part_of
located_in
IBA
IPI
IDA
IEA
(PMID:21873635)
(PMID:23332750)
(PMID:10409744), (PMID:14580349), (PMID:27007846), (PMID:29111974), (PMID:9774672)
GO_Central
ComplexPortal
UniProt
InterPro
PMID:9774672 PMID:10409744 PMID:14580349 PMID:21873635 PMID:23332750 More... GO_REF:0000002 NCBI chr 8:119,730,773...119,832,858
Ensembl chr 8:119,730,774...119,832,841
JBrowse link
G TAF3 TATA-box binding protein associated factor 3 part_of
located_in
IDA
IPI
IBA
(PMID:11438666), (PMID:29111974)
(PMID:23332750)
(PMID:21873635)
MGI
ComplexPortal
GO_Central
PMID:11438666 PMID:21873635 PMID:23332750 PMID:29111974 NCBI chr10:7,818,505...8,016,631
Ensembl chr10:7,818,505...8,016,631
JBrowse link
G TAF4 TATA-box binding protein associated factor 4 part_of
located_in
IBA
IPI
IEA
IDA
(PMID:21873635)
(PMID:23332750)
(PMID:14580349), (PMID:29111974)
GO_Central
ComplexPortal
InterPro
ARUK-UCL
PMID:14580349 PMID:21873635 PMID:23332750 PMID:29111974 GO_REF:0000002 NCBI chr20:61,974,798...62,065,881
Ensembl chr20:61,953,469...62,065,881
JBrowse link
G TAF4B TATA-box binding protein associated factor 4b part_of IBA
IEA
IDA
(PMID:21873635)
(PMID:29111974)
GO_Central
InterPro
ARUK-UCL
PMID:21873635 PMID:29111974 GO_REF:0000002 NCBI chr18:26,226,445...26,391,685
Ensembl chr18:26,226,445...26,391,685
JBrowse link
G TAF5 TATA-box binding protein associated factor 5 part_of
located_in
IBA
IPI
IDA
(PMID:21873635)
(PMID:23332750)
(PMID:14580349), (PMID:29111974), (PMID:9045704)
GO_Central
ComplexPortal
UniProt
PMID:9045704 PMID:14580349 PMID:21873635 PMID:23332750 PMID:29111974 NCBI chr10:103,367,976...103,389,065
Ensembl chr10:103,367,976...103,389,065
JBrowse link
G TAF5L TATA-box binding protein associated factor 5 like NOT|part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:229,593,111...229,626,122
Ensembl chr 1:229,593,121...229,626,047
JBrowse link
G TAF6 TATA-box binding protein associated factor 6 part_of
located_in
IEA
IPI
IDA
IBA
(PMID:23332750)
(PMID:14580349), (PMID:27007846), (PMID:29111974), (PMID:8262073)
(PMID:21873635)
InterPro
ComplexPortal
MGI
GO_Central
PMID:8262073 PMID:14580349 PMID:21873635 PMID:23332750 PMID:27007846 More... GO_REF:0000002 NCBI chr 7:100,107,070...100,127,208
Ensembl chr 7:100,107,070...100,119,841
JBrowse link
G TAF6L TATA-box binding protein associated factor 6 like part_of IEA InterPro GO_REF:0000002 NCBI chr11:62,771,396...62,787,342
Ensembl chr11:62,771,357...62,787,342
JBrowse link
G TAF7 TATA-box binding protein associated factor 7 part_of
located_in
IEA
IPI
IDA
IBA
(PMID:23332750)
(PMID:14580349), (PMID:24927529), (PMID:25412659), (PMID:27007846), (PMID:29111974), (PMID:7824954)
(PMID:21873635)
InterPro
ComplexPortal
ParkinsonsUK-UCL
GO_Central
PMID:7824954 PMID:14580349 PMID:21873635 PMID:23332750 PMID:24927529 More... GO_REF:0000002 NCBI chr 5:141,318,490...141,320,784
Ensembl chr 5:141,260,225...141,320,784
JBrowse link
G TAF7L TATA-box binding protein associated factor 7 like part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:101,268,257...101,293,083
Ensembl chr  X:101,268,253...101,293,057
JBrowse link
G TAF8 TATA-box binding protein associated factor 8 part_of
located_in
IBA
IPI
IDA
IEA
(PMID:21873635)
(PMID:23332750)
(PMID:14580349), (PMID:27007846), (PMID:29111974)
GO_Central
ComplexPortal
UniProt
InterPro
PMID:14580349 PMID:21873635 PMID:23332750 PMID:27007846 PMID:29111974 GO_REF:0000002 NCBI chr 6:42,050,522...42,083,278
Ensembl chr 6:42,050,513...42,087,461
JBrowse link
G TAF9 TATA-box binding protein associated factor 9 part_of
located_in
IBA
IPI
IDA
(PMID:21873635)
(PMID:23332750)
(PMID:14580349), (PMID:15899866), (PMID:29111974)
GO_Central
ComplexPortal
ARUK-UCL
PMID:14580349 PMID:15899866 PMID:21873635 PMID:23332750 PMID:29111974 NCBI chr 5:69,364,743...69,369,824
Ensembl chr 5:69,364,743...69,370,013
JBrowse link
G TAF9B TATA-box binding protein associated factor 9b part_of IBA
IDA
(PMID:21873635)
(PMID:15899866), (PMID:29111974)
GO_Central
UniProt
PMID:15899866 PMID:21873635 PMID:29111974 NCBI chr  X:78,129,748...78,139,650
Ensembl chr  X:78,129,748...78,139,650
JBrowse link
G TBP TATA-box binding protein located_in
part_of
ISO
IPI
IDA
(PMID:23332750)
(PMID:14580349), (PMID:27007846), (PMID:27193682), (PMID:29111974), (PMID:7729427)
RGD
ComplexPortal
UniProt
PMID:7729427 PMID:7980586 PMID:14580349 PMID:23332750 PMID:27007846 More... RGD:2306552 NCBI chr 6:170,554,369...170,572,859
Ensembl chr 6:170,554,302...170,572,870
JBrowse link
G TCEA1 transcription elongation factor A1 part_of IDA (PMID:27193682) UniProt PMID:27193682 NCBI chr 8:53,966,556...54,022,448
Ensembl chr 8:53,966,552...54,022,456
JBrowse link
transcription factor TFIIE complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2E1 general transcription factor IIE subunit 1 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:120,742,744...120,783,069
Ensembl chr 3:120,742,637...120,783,069
JBrowse link
G GTF2E2 general transcription factor IIE subunit 2 part_of IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 8:30,578,318...30,658,241
Ensembl chr 8:30,578,318...30,658,236
JBrowse link
transcription factor TFIIF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2F1 general transcription factor IIF subunit 1 part_of
located_in
IBA
IPI
(PMID:21873635)
(PMID:11183778)
GO_Central
ComplexPortal
PMID:11183778 PMID:21873635 NCBI chr19:6,379,569...6,393,186
Ensembl chr19:6,379,572...6,393,981
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 part_of
located_in
IBA
IPI
(PMID:21873635)
(PMID:11183778)
GO_Central
ComplexPortal
PMID:11183778 PMID:21873635 NCBI chr13:45,119,830...45,284,893
Ensembl chr13:45,120,510...45,284,893
JBrowse link
transcription factor TFIIH holo complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNH cyclin H part_of IDA (PMID:9852112) UniProt PMID:9852112 NCBI chr 5:87,311,471...87,412,971
Ensembl chr 5:87,318,416...87,412,930
JBrowse link
G CDK7 cyclin dependent kinase 7 part_of IDA
ISO
(PMID:9852112) UniProt
RGD
PMID:7553866 PMID:9852112 RGD:9590319 NCBI chr 5:69,234,795...69,277,430
Ensembl chr 5:69,234,795...69,277,430
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit part_of IDA
TAS
(PMID:9852112)
(PMID:7663514)
UniProt PMID:7663514 PMID:9852112 NCBI chr19:45,349,837...45,370,647
Ensembl chr19:45,349,837...45,370,918
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit part_of IDA
IBA
TAS
(PMID:9852112)
(PMID:21873635)
(PMID:7663514)
UniProt
GO_Central
PMID:7663514 PMID:9852112 PMID:21873635 NCBI chr 2:127,257,290...127,294,166
Ensembl chr 2:127,257,290...127,294,166
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 ISO RGD PMID:7553866 RGD:9590319 NCBI chr13:45,119,830...45,284,893
Ensembl chr13:45,120,510...45,284,893
JBrowse link
G GTF2H1 general transcription factor IIH subunit 1 part_of IDA
ISO
IBA
(PMID:9852112)
(PMID:21873635)
UniProt
RGD
GO_Central
PMID:7553866 PMID:9852112 PMID:21873635 RGD:9590319 NCBI chr11:18,322,567...18,367,045
Ensembl chr11:18,322,295...18,367,045
JBrowse link
G GTF2H2 general transcription factor IIH subunit 2 part_of IDA
IBA
(PMID:9852112)
(PMID:21873635)
UniProt
GO_Central
PMID:9852112 PMID:21873635 NCBI chr 5:71,035,124...71,109,113
Ensembl chr 5:71,032,670...71,067,689
JBrowse link
G GTF2H2C GTF2H2 family member C part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:69,560,191...69,595,221
Ensembl chr 5:71,032,670...71,067,689
Ensembl chr 5:71,032,670...71,067,689
JBrowse link
G GTF2H2C_2 GTF2H2 family member C, copy 2 part_of IBA (PMID:21873635) GO_Central PMID:21873635
G GTF2H3 general transcription factor IIH subunit 3 part_of IBA
IDA
(PMID:21873635)
(PMID:9852112)
GO_Central
UniProt
PMID:9852112 PMID:21873635 NCBI chr12:123,633,829...123,662,604
Ensembl chr12:123,633,739...123,662,604
JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 part_of IDA
IBA
(PMID:9852112)
(PMID:21873635)
UniProt
GO_Central
PMID:9852112 PMID:21873635 NCBI chr 6:30,908,207...30,914,106
Ensembl chr 6:30,908,207...30,914,106
JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:158,168,316...158,199,344
Ensembl chr 6:158,168,350...158,199,344
JBrowse link
G MMS19 MMS19 homolog, cytosolic iron-sulfur assembly component part_of NAS (PMID:11279242) UniProt PMID:11279242 NCBI chr10:97,458,324...97,498,794
Ensembl chr10:97,458,324...97,498,794
JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase part_of IEA
IBA
IDA
(PMID:21873635)
(PMID:9852112)
InterPro
GO_Central
UniProt
PMID:9852112 PMID:21873635 GO_REF:0000002 NCBI chr14:60,734,735...60,969,965
Ensembl chr14:60,734,742...60,969,965
JBrowse link
transcription factor TFIIK complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNH cyclin H part_of IBA
IDA
IEA
(PMID:21873635)
(PMID:8692841)
GO_Central
UniProt
InterPro
PMID:8692841 PMID:21873635 GO_REF:0000002 NCBI chr 5:87,311,471...87,412,971
Ensembl chr 5:87,318,416...87,412,930
JBrowse link
G CDK7 cyclin dependent kinase 7 part_of IBA
IEA
IDA
(PMID:21873635)
(PMID:8692841)
GO_Central
InterPro
UniProt
PMID:8692841 PMID:21873635 GO_REF:0000002 NCBI chr 5:69,234,795...69,277,430
Ensembl chr 5:69,234,795...69,277,430
JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase part_of IDA (PMID:8692841) UniProt PMID:8692841 NCBI chr14:60,734,735...60,969,965
Ensembl chr14:60,734,742...60,969,965
JBrowse link
transcription factor TFTC complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KAT2A lysine acetyltransferase 2A part_of IDA (PMID:10373431) UniProt PMID:10373431 NCBI chr17:42,113,111...42,121,367
Ensembl chr17:42,113,111...42,121,367
JBrowse link
G SUPT3H SPT3 homolog, SAGA and STAGA complex component part_of IDA (PMID:10373431) UniProt PMID:10373431 NCBI chr 6:44,809,057...45,378,051
Ensembl chr 6:44,809,317...45,377,953
JBrowse link
G TADA3 transcriptional adaptor 3 part_of IDA (PMID:10373431) UniProt PMID:10373431 NCBI chr 3:9,779,967...9,793,011
Ensembl chr 3:9,779,967...9,793,011
JBrowse link
G TAF10 TATA-box binding protein associated factor 10 part_of IDA (PMID:10373431), (PMID:9603525) UniProt PMID:9603525 PMID:10373431 NCBI chr11:6,606,294...6,612,216
Ensembl chr11:6,606,294...6,612,539
JBrowse link
G TAF12 TATA-box binding protein associated factor 12 part_of IDA (PMID:9603525) UniProt PMID:9603525 NCBI chr 1:28,602,850...28,648,707
Ensembl chr 1:28,589,323...28,643,085
JBrowse link
G TAF2 TATA-box binding protein associated factor 2 part_of IDA (PMID:10373431) UniProt PMID:10373431 NCBI chr 8:119,730,773...119,832,858
Ensembl chr 8:119,730,774...119,832,841
JBrowse link
G TAF4 TATA-box binding protein associated factor 4 part_of IDA (PMID:10373431), (PMID:9603525) UniProt PMID:9603525 PMID:10373431 NCBI chr20:61,974,798...62,065,881
Ensembl chr20:61,953,469...62,065,881
JBrowse link
G TAF5 TATA-box binding protein associated factor 5 part_of IDA (PMID:10373431), (PMID:9603525) UniProt PMID:9603525 PMID:10373431 NCBI chr10:103,367,976...103,389,065
Ensembl chr10:103,367,976...103,389,065
JBrowse link
G TAF5L TATA-box binding protein associated factor 5 like part_of IEA
IDA
(PMID:10373431) InterPro
UniProt
PMID:10373431 GO_REF:0000002 NCBI chr 1:229,593,111...229,626,122
Ensembl chr 1:229,593,121...229,626,047
JBrowse link
G TAF6 TATA-box binding protein associated factor 6 part_of IDA (PMID:9603525) UniProt PMID:9603525 NCBI chr 7:100,107,070...100,127,208
Ensembl chr 7:100,107,070...100,119,841
JBrowse link
G TAF7 TATA-box binding protein associated factor 7 part_of IDA (PMID:9603525) UniProt PMID:9603525 NCBI chr 5:141,318,490...141,320,784
Ensembl chr 5:141,260,225...141,320,784
JBrowse link
G TAF9 TATA-box binding protein associated factor 9 part_of IDA
IBA
(PMID:15899866)
(PMID:21873635)
UniProt
GO_Central
PMID:15899866 PMID:21873635 NCBI chr 5:69,364,743...69,369,824
Ensembl chr 5:69,364,743...69,370,013
JBrowse link
G TAF9B TATA-box binding protein associated factor 9b part_of IDA (PMID:15899866) UniProt PMID:15899866 NCBI chr  X:78,129,748...78,139,650
Ensembl chr  X:78,129,748...78,139,650
JBrowse link
G TRRAP transformation/transcription domain associated protein part_of IDA (PMID:10373431) UniProt PMID:10373431 NCBI chr 7:98,878,532...99,013,241
Ensembl chr 7:98,877,933...99,050,831
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19416
    cellular anatomical entity 19209
      nucleoplasm 4155
        RNA polymerase II, holoenzyme 89
          Cdc73/Paf1 complex 8
          RNA polymerase II, core complex 15
          transcription factor TFIIA complex 6
          transcription factor TFIID complex + 44
          transcription factor TFIIE complex 2
          transcription factor TFIIF complex 2
          transcription factor TFIIH holo complex + 14
          transcription factor TFTC complex 14
Path 2
Term Annotations click to browse term
  cellular_component 19416
    cellular anatomical entity 19209
      organelle 14465
        membrane-bounded organelle 13628
          intracellular membrane-bounded organelle 12562
            nucleus 7986
              nuclear protein-containing complex 1352
                nuclear DNA-directed RNA polymerase complex 114
                  RNA polymerase II, holoenzyme 89
                    Cdc73/Paf1 complex 8
                    RNA polymerase II, core complex 15
                    transcription factor TFIIA complex 6
                    transcription factor TFIID complex + 44
                    transcription factor TFIIE complex 2
                    transcription factor TFIIF complex 2
                    transcription factor TFIIH holo complex + 14
                    transcription factor TFTC complex 14
paths to the root