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ONTOLOGY REPORT - ANNOTATIONS


Term:sarcoplasmic reticulum
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Accession:GO:0016529 term browser browse the term
Definition:A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle cell; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage.
Comment:See also the cellular component terms 'sarcoplasm ; GO:0016528', 'nuclear envelope ; GO:0005635' and 'endoplasmic reticulum ; GO:0005783'.
Synonyms:alt_id: GO:0008221
 xref: Wikipedia:Endoplasmic_reticulum#Sarcoplasmic_reticulum


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sarcoplasmic reticulum term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AKAP6 A-kinase anchoring protein 6 JBrowse link 7 66,913,541 67,462,147 RGD:14298760
G CACNA2D1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 JBrowse link 9 97,781,057 98,265,925 RGD:14298760
G HAX1 HCLS1 associated protein X-1 JBrowse link 4 95,467,629 95,470,972 RGD:14298760
G ITPR1 inositol 1,4,5-trisphosphate receptor type 1 JBrowse link 13 61,068,131 61,398,918 RGD:14298760
G ITPR3 inositol 1,4,5-trisphosphate receptor type 3 JBrowse link 7 29,835,922 29,901,305 RGD:14298760
G JPH1 junctophilin 1 JBrowse link 4 61,628,304 61,716,550 RGD:14298760
G JSRP1 junctional sarcoplasmic reticulum protein 1 JBrowse link 2 76,418,508 76,422,405 RGD:14298760
G POMT1 protein O-mannosyltransferase 1 JBrowse link 1 271,432,196 271,448,584 RGD:14298760
G RASD1 ras related dexamethasone induced 1 JBrowse link 12 60,922,466 60,924,255 RGD:14298760
G RYR1 ryanodine receptor 1 JBrowse link 6 47,339,759 47,458,457 RGD:14298760
G SGCD sarcoglycan delta JBrowse link 16 66,447,982 67,481,709 RGD:14298760
G SLN sarcolipin JBrowse link 9 36,232,955 36,242,405 RGD:14298760
G SYNE2 spectrin repeat containing nuclear envelope protein 2 JBrowse link 1 193,909,563 194,352,550 RGD:14298760
G THBS4 thrombospondin 4 JBrowse link 2 88,729,531 88,780,759 RGD:14298760
G TMEM38A transmembrane protein 38A JBrowse link 2 60,929,043 60,960,527 RGD:14298760
G TRDN triadin JBrowse link 1 39,180,544 39,567,245 RGD:14298760
G XDH xanthine dehydrogenase JBrowse link 3 107,987,060 108,052,043 RGD:14298760
junctional sarcoplasmic reticulum membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G JPH1 junctophilin 1 JBrowse link 4 61,628,304 61,716,550 RGD:14298760
G TRDN triadin JBrowse link 1 39,180,544 39,567,245 RGD:14298760
longitudinal sarcoplasmic reticulum term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DHRS7C dehydrogenase/reductase 7C JBrowse link 12 54,647,773 54,661,442 RGD:14298760
ryanodine receptor complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RYR1 ryanodine receptor 1 JBrowse link 6 47,339,759 47,458,457 RGD:14298760
sarcoplasmic reticulum lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CALR calreticulin JBrowse link 2 66,098,263 66,102,074 RGD:14298760
G CASQ1 calsequestrin 1 JBrowse link 4 90,276,752 90,288,990 RGD:14298760
G CASQ2 calsequestrin 2 JBrowse link 4 104,918,204 104,984,019 RGD:14298760
G HSP90B1 heat shock protein 90 beta family member 1 JBrowse link 5 80,511,513 80,531,016 RGD:14298760
sarcoplasmic reticulum membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP2A1 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 JBrowse link 3 18,545,064 18,568,312 RGD:14298760
G ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 JBrowse link 14 31,674,659 31,744,981 RGD:14298760
G ATP2A3 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 JBrowse link 12 49,980,488 50,014,006 RGD:14298760
G C4H1orf226 chromosome 4 C1orf226 homolog JBrowse link 4 88,129,231 88,471,741 RGD:14298760
G CAMK2D calcium/calmodulin dependent protein kinase II delta JBrowse link 8 108,916,019 109,221,317 RGD:14298760
G DHRS7C dehydrogenase/reductase 7C JBrowse link 12 54,647,773 54,661,442 RGD:14298760
G DMPK DM1 protein kinase JBrowse link 6 52,100,259 52,110,822 RGD:14298760
G FKBP1A FKBP prolyl isomerase 1A JBrowse link 17 33,910,047 33,935,212 RGD:14298760
G FKBP1B FKBP prolyl isomerase 1B JBrowse link 3 114,623,529 114,636,200 RGD:14298760
G ITPR2 inositol 1,4,5-trisphosphate receptor type 2 JBrowse link 5 46,935,923 47,465,681 RGD:14298760
G KLHL41 kelch like family member 41 JBrowse link 15 75,875,694 75,893,789 RGD:14298760
G MRLN myoregulin JBrowse link 14 63,124,188 63,152,845 RGD:14298760
G NOS1 nitric oxide synthase 1 JBrowse link 14 35,112,898 35,299,297 RGD:14298760
G RYR1 ryanodine receptor 1 JBrowse link 6 47,339,759 47,458,457 RGD:14298760
G RYR2 ryanodine receptor 2 JBrowse link 14 53,652,140 54,406,691 RGD:14298760
terminal cisterna term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RYR1 ryanodine receptor 1 JBrowse link 6 47,339,759 47,458,457 RGD:14298760

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 15319
    intracellular 10411
      cytoplasm 7430
        sarcoplasm 42
          sarcoplasmic reticulum 35
            longitudinal sarcoplasmic reticulum + 1
            sarcoplasmic reticulum lumen + 4
            sarcoplasmic reticulum membrane + 17
            terminal cisterna + 1
Path 2
Term Annotations click to browse term
  cellular_component 15319
    cellular anatomical entity 15170
      organelle 9349
        membrane-bounded organelle 8229
          intracellular membrane-bounded organelle 7570
            endoplasmic reticulum 778
              sarcoplasmic reticulum 35
                longitudinal sarcoplasmic reticulum + 1
                sarcoplasmic reticulum lumen + 4
                sarcoplasmic reticulum membrane + 17
                terminal cisterna + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.