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ONTOLOGY REPORT - ANNOTATIONS


Term:sarcoplasm
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Accession:GO:0016528 term browser browse the term
Definition:The cytoplasm of a muscle cell; includes the sarcoplasmic reticulum.
Synonyms:xref: Wikipedia:Sarcoplasm


show annotations for term's descendants           Sort by:
 
sarcoplasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtnbp1 dystrobrevin binding protein 1 IEA
ISO
GO_REF:0000107
(MGI:3037366|PMID:14688250)
Ensembl
RGD
PMID:14688250 GO_REF:0000107 MGI:3037366 NCBI chr17:20,090,136...20,182,332
Ensembl chr17:20,090,246...20,182,206
JBrowse link
G E2f5 E2F transcription factor 5 IDA RGD PMID:10725332 RGD:1581722 NCBI chr 2:88,350,764...88,366,913
Ensembl chr 2:88,351,361...88,366,115
JBrowse link
G Fabp3 fatty acid binding protein 3 IDA RGD PMID:2032944 RGD:1582411 NCBI chr 5:148,528,854...148,535,597
Ensembl chr 5:148,528,725...148,535,565
JBrowse link
G Flnc filamin C IDA PMID:21223964 BHF-UCL PMID:21223964 RGD:8554309 NCBI chr 4:56,710,934...56,738,779
Ensembl chr 4:56,711,049...56,738,791
JBrowse link
G Gsn gelsolin ISO (PMID:19549824) RGD PMID:19549824 NCBI chr 3:14,456,106...14,508,922
Ensembl chr 3:14,467,330...14,508,911
JBrowse link
G Habp4 hyaluronan binding protein 4 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:1,679,561...1,702,245
Ensembl chr17:1,679,627...1,701,623
JBrowse link
G Mef2c myocyte enhancer factor 2C IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Nol3 nucleolar protein 3 IEA
ISO
GO_REF:0000107
(MGI:3027425|PMID:14645204)
Ensembl
RGD
PMID:14645204 GO_REF:0000107 MGI:3027425 NCBI chr19:37,232,567...37,236,668
Ensembl chr19:37,235,001...37,236,649
JBrowse link
G Plec plectin IDA PMID:21223964 BHF-UCL PMID:21223964 RGD:8554309 NCBI chr 7:117,230,319...117,291,859
Ensembl chr 7:117,230,319...117,289,961
JBrowse link
G Slc8a3 solute carrier family 8 member A3 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:104,889,500...105,099,408
Ensembl chr 6:104,891,376...105,097,054
JBrowse link
G Spock1 sparc/osteonectin, cwcv and kazal like domains proteoglycan 1 ISO (MGI:2667547|PMID:10842087) RGD PMID:10842087 MGI:2667547 NCBI chr17:7,675,531...7,797,863
Ensembl chr17:7,675,531...7,797,863
JBrowse link
junctional membrane complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casq2 calsequestrin 2 ISO (MGI:4453101|PMID:19920148) RGD PMID:19920148 MGI:4453101 NCBI chr 2:204,512,361...204,568,643
Ensembl chr 2:204,512,302...204,568,656
JBrowse link
G Jph1 junctophilin 1 ISO
IBA
(MGI:1861885|PMID:10949023)
PMID:21873635
RGD PMID:10949023, PMID:21873635 MGI:1861885, RGD:13792537 NCBI chr 5:1,417,414...1,511,754
Ensembl chr 5:1,417,478...1,511,416
JBrowse link
G Jph2 junctophilin 2 ISO
IBA
(MGI:1861885|PMID:10949023)
PMID:21873635
RGD PMID:10949023, PMID:21873635 MGI:1861885, RGD:13792537 NCBI chr 3:159,709,998...159,776,536
Ensembl chr 3:159,712,325...159,775,643
JBrowse link
G Jph3 junctophilin 3 ISO
IBA
(MGI:3654871|PMID:16809425)
PMID:21873635
RGD PMID:16809425, PMID:21873635 MGI:3654871, RGD:13792537 NCBI chr19:54,553,419...54,613,477
Ensembl chr19:54,553,419...54,613,477
JBrowse link
G Jph4 junctophilin 4 IEA
IBA
GO_REF:0000104
PMID:21873635
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr15:33,767,116...33,777,289
Ensembl chr15:33,768,595...33,775,109
JBrowse link
G Ryr1 ryanodine receptor 1 ISO (MGI:1342891|PMID:10444070) RGD PMID:10444070 MGI:1342891 NCBI chr 1:87,959,596...88,066,252
Ensembl chr 1:87,959,712...88,066,101
JBrowse link
G Ryr3 ryanodine receptor 3 ISO (MGI:1342891|PMID:10444070) RGD PMID:10444070 MGI:1342891 NCBI chr 3:104,117,307...104,665,151
Ensembl chr 3:104,118,063...104,504,204
JBrowse link
G Trdn triadin IDA
IMP
PMID:22505613 RGD
BHF-UCL
PMID:22505613, PMID:22505613 RGD:7327226, RGD:7327226 NCBI chr 1:25,403,390...25,787,664
Ensembl chr 1:25,403,390...25,839,345
JBrowse link
junctional sarcoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap6 A-kinase anchoring protein 6 colocalizes_with IDA PMID:12709444
PMID:9679148
BHF-UCL PMID:12709444, PMID:9679148 RGD:8554839, RGD:8553491 NCBI chr 6:73,553,111...73,991,992
Ensembl chr 6:73,553,210...73,990,534
JBrowse link
G Jph1 junctophilin 1 ISO (MGI:1861885|PMID:10949023) RGD PMID:10949023 MGI:1861885 NCBI chr 5:1,417,414...1,511,754
Ensembl chr 5:1,417,478...1,511,416
JBrowse link
G Trdn triadin IDA
IBA
PMID:21873635
PMID:22505613
RGD
GO_Central
BHF-UCL
PMID:7565919, PMID:21873635, PMID:22505613 RGD:2314606, RGD:13792537, RGD:7327226 NCBI chr 1:25,403,390...25,787,664
Ensembl chr 1:25,403,390...25,839,345
JBrowse link
longitudinal sarcoplasmic reticulum term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 ISO (PMID:16402920) RGD PMID:16402920 NCBI chr12:39,553,903...39,603,326
Ensembl chr12:39,553,903...39,603,326
JBrowse link
G Dhrs7c dehydrogenase/reductase 7C ISO (MGI:5306721|PMID:21995425) RGD PMID:21995425 MGI:5306721 NCBI chr10:54,352,270...54,370,653
Ensembl chr10:54,352,270...54,370,653
JBrowse link
ryanodine receptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fkbp1a FKBP prolyl isomerase 1A ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 3:147,042,944...147,062,725
Ensembl chr 3:147,042,944...147,062,724
JBrowse link
G Ryr1 ryanodine receptor 1 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:87,959,596...88,066,252
Ensembl chr 1:87,959,712...88,066,101
JBrowse link
sarcoplasmic reticulum term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07062512.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:180,425,804...180,505,916 JBrowse link
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase IDA RGD PMID:15180797 RGD:1642741 NCBI chr 2:219,788,234...219,843,189
Ensembl chr 2:219,788,234...219,842,986
JBrowse link
G Akap6 A-kinase anchoring protein 6 IDA
IBA
ISO
IEA
PMID:21873635
(PMID:10830164), (PMID:7721854)
GO_REF:0000107
RGD
Ensembl
PMID:7721854 PMID:10830164, PMID:7721854, PMID:21873635 GO_REF:0000107, RGD:6902944, RGD:13792537 NCBI chr 6:73,553,111...73,991,992
Ensembl chr 6:73,553,210...73,990,534
JBrowse link
G Akap7 A-kinase anchoring protein 7 IDA RGD PMID:17901878 RGD:2312630 NCBI chr 1:21,129,213...21,263,850
Ensembl chr 1:21,141,970...21,263,850
JBrowse link
G Akt2 AKT serine/threonine kinase 2 IDA MMO:0000662 RGD PMID:29676955 RGD:13703029 NCBI chr 1:84,400,939...84,451,223
Ensembl chr 1:84,411,726...84,450,162
JBrowse link
G Ank1 ankyrin 1 IDA RGD PMID:12631729, PMID:9024692 RGD:633514, RGD:11251703 NCBI chr16:73,681,422...73,912,605
Ensembl chr16:73,681,422...73,827,488
JBrowse link
G Ank3 ankyrin 3 IDA RGD PMID:9664041 RGD:631996 NCBI chr20:19,948,767...20,480,628
Ensembl chr20:20,105,047...20,480,623
JBrowse link
G Atp2a1 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 TAS
ISO
ISS
IDA
(MGI:2153332|PMID:11784029)
GO_REF:0000024
RGD
UniProt
PMID:11784029, PMID:12222829, PMID:8447366, PMID:19029185, PMID:12409282 GO_REF:0000024 MGI:2153332, RGD:727704, RGD:7241223, RGD:2313265, RGD:724593 NCBI chr 1:197,855,912...197,875,038 JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 TAS
ISO
IDA
(MGI:5314827|PMID:22355118), (MGI:85770|PMID:9038922)
(PMID:12804600), (PMID:16402920)
RGD PMID:9038922 PMID:12804600 PMID:16402920 PMID:22355118, PMID:11595740, PMID:8447366, PMID:17901878, PMID:12409282 MGI:5314827 MGI:85770, RGD:70642, RGD:7241223, RGD:2312630, RGD:724593 NCBI chr12:39,553,903...39,603,326
Ensembl chr12:39,553,903...39,603,326
JBrowse link
G Atp2a3 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 ISO (PMID:8809064) RGD PMID:8809064 NCBI chr10:59,528,849...59,560,440
Ensembl chr10:59,529,785...59,560,433
JBrowse link
G Ca4 carbonic anhydrase 4 IDA RGD PMID:8911968 RGD:1600749 NCBI chr10:72,272,286...72,281,069
Ensembl chr10:72,272,248...72,281,067
JBrowse link
G Cacna1s calcium voltage-gated channel subunit alpha1 S ISO (MGI:3028707|PMID:12954602), (MGI:3529615|PMID:15536090), (MGI:3612722|PMID:16403451), (MGI:84458|PMID:8943043) RGD PMID:8943043 PMID:12954602 PMID:15536090 PMID:16403451 MGI:3028707 MGI:3529615 MGI:3612722 MGI:84458 NCBI chr13:52,889,570...52,964,558
Ensembl chr13:52,889,737...52,964,155
JBrowse link
G Cacna2d1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 IEA
ISO
GO_REF:0000107
(MGI:3529615|PMID:15536090)
Ensembl
RGD
PMID:15536090 GO_REF:0000107 MGI:3529615 NCBI chr 4:15,706,974...16,130,848
Ensembl chr 4:15,710,417...16,130,848
JBrowse link
G Cacnb1 calcium voltage-gated channel auxiliary subunit beta 1 ISO (MGI:84458|PMID:8943043) RGD PMID:8943043 MGI:84458 NCBI chr10:85,954,138...85,974,764
Ensembl chr10:85,954,138...85,974,651
JBrowse link
G Calr calreticulin IDA RGD PMID:8600158 RGD:2313254 NCBI chr19:25,956,771...25,961,666
Ensembl chr19:25,956,771...25,961,666
JBrowse link
G Camk2d calcium/calmodulin-dependent protein kinase II delta ISO (MGI:5466245|PMID:21998325) RGD PMID:21998325 MGI:5466245 NCBI chr 2:230,900,907...231,132,207
Ensembl chr 2:230,901,126...231,132,039
JBrowse link
G Casq1 calsequestrin 1 IDA
ISO
(MGI:2449410|PMID:12419813), (MGI:3037390|PMID:14728599), (MGI:5582187|PMID:7945294) RGD PMID:7945294 PMID:12419813 PMID:14728599, PMID:19029185 MGI:2449410 MGI:3037390 MGI:5582187, RGD:2313265 NCBI chr13:90,592,676...90,602,365
Ensembl chr13:90,592,681...90,602,365
JBrowse link
G Casq2 calsequestrin 2 IDA
ISO
(PMID:9287354) RGD PMID:9287354, PMID:17569730 RGD:2314601 NCBI chr 2:204,512,361...204,568,643
Ensembl chr 2:204,512,302...204,568,656
JBrowse link
G Ccdc78 coiled-coil domain containing 78 ISO (PMID:22818856) RGD PMID:22818856 NCBI chr10:15,155,839...15,160,039
Ensembl chr10:15,156,207...15,159,894
JBrowse link
G Fabp3 fatty acid binding protein 3 NOT IDA RGD PMID:2032944 RGD:1582411 NCBI chr 5:148,528,854...148,535,597
Ensembl chr 5:148,528,725...148,535,565
JBrowse link
G Fkbp1a FKBP prolyl isomerase 1A ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 3:147,042,944...147,062,725
Ensembl chr 3:147,042,944...147,062,724
JBrowse link
G Fkbp1b FKBP prolyl isomerase 1B ISO (MGI:5007884|PMID:19578067), (MGI:5288113|PMID:21788490) RGD PMID:19578067 PMID:21788490 MGI:5007884 MGI:5288113 NCBI chr 6:29,975,863...29,987,252
Ensembl chr 6:29,977,797...29,987,451
JBrowse link
G Gstm2 glutathione S-transferase mu 2 ISO (PMID:22406107) RGD PMID:22406107 NCBI chr 2:210,778,041...210,782,807
Ensembl chr 2:210,720,704...210,782,856
JBrowse link
G H6pd hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) ISO MGI:3624665 (MGI:3793398|PMID:18222920) RGD PMID:18222920 MGI:3793398 NCBI chr 5:166,994,683...167,030,441
Ensembl chr 5:166,998,881...167,030,441
JBrowse link
G Hax1 HCLS1 associated protein X-1 IDA
IBA
ISO
PMID:19920172
PMID:21873635
(MGI:4414726|PMID:19920172)
RGD PMID:19920172, PMID:19920172, PMID:21873635 MGI:4414726, RGD:10047287, RGD:13792537 NCBI chr 2:189,330,900...189,333,305
Ensembl chr 2:189,330,902...189,333,322
JBrowse link
G Hk2 hexokinase 2 IDA MMO:0000662 RGD PMID:29676955 RGD:13703029 NCBI chr 4:113,559,396...113,609,897
Ensembl chr 4:113,559,427...113,610,243
JBrowse link
G Itpr1 inositol 1,4,5-trisphosphate receptor, type 1 IDA
IBA
ISO
IEA
PMID:21873635
(MGI:3583849|PMID:16014380)
GO_REF:0000107
RGD
Ensembl
PMID:16014380, PMID:16014380, PMID:21873635 GO_REF:0000107 MGI:3583849, RGD:7175269, RGD:13792537 NCBI chr 4:140,247,297...140,580,749
Ensembl chr 4:140,247,313...140,580,748
JBrowse link
G Itpr2 inositol 1,4,5-trisphosphate receptor, type 2 IDA
IBA
ISO
PMID:21873635
(MGI:3583849|PMID:16014380)
RGD PMID:16014380, PMID:16014380, PMID:21873635 MGI:3583849, RGD:7175269, RGD:13792537 NCBI chr 4:180,423,452...180,800,088
Ensembl chr 4:180,538,389...180,722,358
JBrowse link
G Itpr3 inositol 1,4,5-trisphosphate receptor, type 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:5,645,894...5,711,702
Ensembl chr20:5,646,097...5,711,702
JBrowse link
G Jph1 junctophilin 1 ISO
IBA
(MGI:1861885|PMID:10949023)
PMID:21873635
RGD PMID:10949023, PMID:21873635 MGI:1861885, RGD:13792537 NCBI chr 5:1,417,414...1,511,754
Ensembl chr 5:1,417,478...1,511,416
JBrowse link
G Jph2 junctophilin 2 ISO
IBA
(MGI:1861885|PMID:10949023)
PMID:21873635
RGD PMID:10949023, PMID:21873635 MGI:1861885, RGD:13792537 NCBI chr 3:159,709,998...159,776,536
Ensembl chr 3:159,712,325...159,775,643
JBrowse link
G Jsrp1 junctional sarcoplasmic reticulum protein 1 ISO
IBA
(MGI:2677582|PMID:12871958)
PMID:21873635
RGD PMID:12871958, PMID:21873635 MGI:2677582, RGD:13792537 NCBI chr 7:11,769,950...11,774,373
Ensembl chr 7:11,769,400...11,774,387
JBrowse link
G Mtmr12 myotubularin related protein 12 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:62,236,497...62,305,995
Ensembl chr 2:62,236,577...62,303,919
JBrowse link
G Nol3 nucleolar protein 3 IDA PMID:23382383 UniProt PMID:23382383 RGD:10047354 NCBI chr19:37,232,567...37,236,668
Ensembl chr19:37,235,001...37,236,649
JBrowse link
G Nos1 nitric oxide synthase 1 ISO
IEA
(PMID:9892689)
GO_REF:0000107
RGD
Ensembl
PMID:9892689 GO_REF:0000107 NCBI chr12:44,214,949...44,405,530
Ensembl chr12:44,213,943...44,520,341
JBrowse link
G P3h2 prolyl 3-hydroxylase 2 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr11:78,028,885...78,169,746
Ensembl chr11:78,029,038...78,169,648
JBrowse link
G Pln phospholamban IDA
ISO
(MGI:85770|PMID:9038922) RGD PMID:9038922, PMID:12403631, PMID:17901878 MGI:85770, RGD:633528, RGD:2312630 NCBI chr20:34,633,157...34,642,904
Ensembl chr20:34,633,157...34,642,904
JBrowse link
G Pomt1 protein-O-mannosyltransferase 1 ISO (MGI:3709220|PMID:17456771) RGD PMID:17456771 MGI:3709220 NCBI chr 3:11,253,424...11,271,873
Ensembl chr 3:11,254,026...11,271,872
JBrowse link
G Pygm glycogen phosphorylase, muscle associated IDA RGD PMID:12967914, PMID:11692172 RGD:1599989, RGD:1599897 NCBI chr 1:221,756,325...221,771,142
Ensembl chr 1:221,756,286...221,771,143
JBrowse link
G Rasd1 ras related dexamethasone induced 1 ISO (MGI:5613473|PMID:19800018) RGD PMID:19800018 MGI:5613473 NCBI chr10:46,330,361...46,339,326
Ensembl chr10:46,330,368...46,332,172
JBrowse link
G Ryr1 ryanodine receptor 1 IDA
ISO
(MGI:2153332|PMID:11784029), (MGI:3028707|PMID:12954602), (MGI:3529615|PMID:15536090), (MGI:70290|PMID:7832748), (MGI:84458|PMID:8943043) RGD PMID:7832748 PMID:8943043 PMID:11784029 PMID:12954602 PMID:15536090, PMID:19230144 MGI:2153332 MGI:3028707 MGI:3529615 MGI:70290 MGI:84458, RGD:7175256 NCBI chr 1:87,959,596...88,066,252
Ensembl chr 1:87,959,712...88,066,101
JBrowse link
G Ryr2 ryanodine receptor 2 IDA
ISO
(MGI:5288113|PMID:21788490), (MGI:5431202|PMID:22406107), (MGI:5486563|PMID:12919952)
(PMID:10830164), (PMID:12919952)
PMID:11590243
RGD PMID:10830164 PMID:12919952 PMID:21788490 PMID:22406107, PMID:21807619, PMID:11590243 MGI:5288113 MGI:5431202 MGI:5486563, RGD:7175254, RGD:1599255 NCBI chr17:65,533,998...65,955,606
Ensembl chr17:65,535,403...65,955,606
JBrowse link
G S100a1 S100 calcium binding protein A1 ISO
IBA
(PMID:12804600)
PMID:21873635
(MGI:2664619|PMID:12804600)
RGD PMID:12804600, PMID:21873635 MGI:2664619, RGD:13792537 NCBI chr 2:189,900,505...189,905,348
Ensembl chr 2:189,900,667...189,903,219
JBrowse link
G Sar1a secretion associated, Ras related GTPase 1A ISO (MGI:3037390|PMID:14728599) RGD PMID:14728599 MGI:3037390 NCBI chr20:31,298,269...31,310,676
Ensembl chr20:31,265,483...31,310,674
JBrowse link
G Sgcd sarcoglycan, delta ISO (MGI:3612722|PMID:16403451), (MGI:4835364|PMID:19931597) RGD PMID:16403451 PMID:19931597 MGI:3612722 MGI:4835364 NCBI chr10:32,062,946...32,471,454
Ensembl chr10:32,062,946...32,471,454
JBrowse link
G Slc2a4 solute carrier family 2 member 4 IDA MMO:0000662 RGD PMID:29676955 RGD:13703029 NCBI chr10:56,552,921...56,558,562
Ensembl chr10:56,552,983...56,558,487
JBrowse link
G Sln sarcolipin ISO
ISS
(PMID:9575189)
GO_REF:0000024
RGD
UniProt
PMID:9575189 GO_REF:0000024 NCBI chr 8:58,431,407...58,435,654
Ensembl chr 8:58,431,407...58,435,654
JBrowse link
G Syne2 spectrin repeat containing nuclear envelope protein 2 ISO (PMID:15671068) RGD PMID:15671068 NCBI chr 6:98,884,269...99,153,551 JBrowse link
G Thbs1 thrombospondin 1 ISO (MGI:5431143|PMID:22682248) RGD PMID:22682248 MGI:5431143 NCBI chr 3:109,862,120...109,873,466
Ensembl chr 3:109,862,117...109,873,466
JBrowse link
G Thbs4 thrombospondin 4 ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:5431143|PMID:22682248)
UniProt
Ensembl
RGD
PMID:22682248 GO_REF:0000024 GO_REF:0000107 MGI:5431143 NCBI chr 2:22,343,727...22,385,855
Ensembl chr 2:22,343,727...22,385,855
JBrowse link
G Tmem38a transmembrane protein 38a IEA
ISO
GO_REF:0000107
(MGI:3715564|PMID:17611541)
Ensembl
RGD
PMID:17611541 GO_REF:0000107 MGI:3715564 NCBI chr16:18,960,197...18,974,942
Ensembl chr16:18,959,315...18,974,770
JBrowse link
G Trdn triadin IDA
ISO
(PMID:9287354) RGD PMID:9287354, PMID:21811790 RGD:7327228 NCBI chr 1:25,403,390...25,787,664
Ensembl chr 1:25,403,390...25,839,345
JBrowse link
G Xdh xanthine dehydrogenase IEA
ISO
GO_REF:0000107
(MGI:5613473|PMID:19800018)
Ensembl
RGD
PMID:19800018 GO_REF:0000107 MGI:5613473 NCBI chr 6:25,149,570...25,211,273
Ensembl chr 6:25,149,235...25,211,494
JBrowse link
sarcoplasmic reticulum lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Calr calreticulin IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr19:25,956,771...25,961,666
Ensembl chr19:25,956,771...25,961,666
JBrowse link
G Calu calumenin IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:56,625,611...56,653,112
Ensembl chr 4:56,625,561...56,653,111
JBrowse link
G Casq1 calsequestrin 1 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:3625212|PMID:16600288), (MGI:5306707|PMID:22049211)
UniProt
RGD
PMID:16600288 PMID:22049211, PMID:21873635 GO_REF:0000024 MGI:3625212 MGI:5306707, RGD:13792537 NCBI chr13:90,592,676...90,602,365
Ensembl chr13:90,592,681...90,602,365
JBrowse link
G Casq2 calsequestrin 2 IEA
IBA
ISO
GO_REF:0000044
PMID:21873635
(MGI:4453101|PMID:19920148)
UniProt
RGD
PMID:19920148, PMID:21873635 GO_REF:0000044 MGI:4453101, RGD:13792537 NCBI chr 2:204,512,361...204,568,643
Ensembl chr 2:204,512,302...204,568,656
JBrowse link
G Hsp90b1 heat shock protein 90 beta family member 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:27,226,570...27,240,533
Ensembl chr 7:27,226,569...27,240,533
JBrowse link
G Manf mesencephalic astrocyte-derived neurotrophic factor IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:115,623,175...115,626,408
Ensembl chr 8:115,623,178...115,626,380
JBrowse link
sarcoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07005775.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:197,856,903...197,858,016 JBrowse link
G Atp2a1 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:5614883|PMID:25640239), (MGI:5751610|PMID:26816378)
UniProt
RGD
PMID:25640239 PMID:26816378, PMID:21873635 GO_REF:0000024 MGI:5614883 MGI:5751610, RGD:13792537 NCBI chr 1:197,855,912...197,875,038 JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 IC
IBA
PMID:21873635 RGD
GO_Central
PMID:21300842, PMID:21873635 RGD:6904139, RGD:13792537 NCBI chr12:39,553,903...39,603,326
Ensembl chr12:39,553,903...39,603,326
JBrowse link
G Atp2a3 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 IEA
IBA
GO_REF:0000044
PMID:21873635
UniProt PMID:21873635 GO_REF:0000044, RGD:13792537 NCBI chr10:59,528,849...59,560,440
Ensembl chr10:59,529,785...59,560,433
JBrowse link
G Camk2b calcium/calmodulin-dependent protein kinase II beta IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:86,208,876...86,297,727
Ensembl chr14:86,208,901...86,297,652
JBrowse link
G Camk2d calcium/calmodulin-dependent protein kinase II delta IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:230,900,907...231,132,207
Ensembl chr 2:230,901,126...231,132,039
JBrowse link
G Camk2g calcium/calmodulin-dependent protein kinase II gamma IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr15:3,936,721...3,995,740
Ensembl chr15:3,936,786...3,995,915
JBrowse link
G Casq1 calsequestrin 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:90,592,676...90,602,365
Ensembl chr13:90,592,681...90,602,365
JBrowse link
G Cherp calcium homeostasis endoplasmic reticulum protein IDA PMID:21454501 UniProt PMID:21454501 RGD:8554079 NCBI chr16:19,068,783...19,081,837
Ensembl chr16:19,068,783...19,081,837
JBrowse link
G Dhrs7c dehydrogenase/reductase 7C ISO
IBA
(MGI:5306721|PMID:21995425)
PMID:21873635
RGD PMID:21995425, PMID:21873635 MGI:5306721, RGD:13792537 NCBI chr10:54,352,270...54,370,653
Ensembl chr10:54,352,270...54,370,653
JBrowse link
G Dmpk DM1 protein kinase ISO (MGI:3575053|PMID:15598648) RGD PMID:15598648 MGI:3575053 NCBI chr 1:79,988,096...79,999,358
Ensembl chr 1:79,989,019...79,999,364
JBrowse link
G Fkbp1a FKBP prolyl isomerase 1A ISO (MGI:3028710|PMID:14592808) RGD PMID:14592808 MGI:3028710 NCBI chr 3:147,042,944...147,062,725
Ensembl chr 3:147,042,944...147,062,724
JBrowse link
G Fkbp1b FKBP prolyl isomerase 1B ISO
IBA
(MGI:3028710|PMID:14592808), (MGI:3620455|PMID:16481613)
PMID:21873635
RGD PMID:14592808 PMID:16481613, PMID:21873635 MGI:3028710 MGI:3620455, RGD:13792537 NCBI chr 6:29,975,863...29,987,252
Ensembl chr 6:29,977,797...29,987,451
JBrowse link
G Hrc histidine rich calcium binding protein ISO (MGI:3625212|PMID:16600288) RGD PMID:16600288 MGI:3625212 NCBI chr 1:101,324,788...101,328,391
Ensembl chr 1:101,324,652...101,328,435
JBrowse link
G Itpr2 inositol 1,4,5-trisphosphate receptor, type 2 ISO (PMID:10828023) RGD PMID:10828023 NCBI chr 4:180,423,452...180,800,088
Ensembl chr 4:180,538,389...180,722,358
JBrowse link
G Jph2 junctophilin 2 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:159,709,998...159,776,536
Ensembl chr 3:159,712,325...159,775,643
JBrowse link
G Klhl41 kelch-like family member 41 ISO
IBA
ISS
(PMID:24268659)
PMID:21873635
(MGI:5586786|PMID:24268659)
GO_REF:0000024
RGD
UniProt
PMID:24268659, PMID:21873635 GO_REF:0000024 MGI:5586786, RGD:13792537 NCBI chr 3:55,910,177...55,923,303
Ensembl chr 3:55,910,177...55,923,303
JBrowse link
G Mrln myoregulin ISO (MGI:5614883|PMID:25640239) RGD PMID:25640239 MGI:5614883 NCBI chr20:19,703,628...19,720,596 JBrowse link
G Nos1 nitric oxide synthase 1 ISO (MGI:5613473|PMID:19800018) RGD PMID:19800018 MGI:5613473 NCBI chr12:44,214,949...44,405,530
Ensembl chr12:44,213,943...44,520,341
JBrowse link
G Nos1ap nitric oxide synthase 1 adaptor protein ISO (MGI:5613473|PMID:19800018) RGD PMID:19800018 MGI:5613473 NCBI chr13:88,653,123...88,943,976 JBrowse link
G Pln phospholamban ISS
ISO
GO_REF:0000024
(MGI:5751610|PMID:26816378)
UniProt
RGD
PMID:26816378 GO_REF:0000024 MGI:5751610 NCBI chr20:34,633,157...34,642,904
Ensembl chr20:34,633,157...34,642,904
JBrowse link
G Ryr1 ryanodine receptor 1 IDA
IBA
ISO
IEA
PMID:21454501
PMID:21873635
(MGI:3028710|PMID:14592808), (MGI:3764002|PMID:18003898)
GO_REF:0000044
PMID:11316255
(PMID:7556644)
RGD
UniProt
PMID:7556644 PMID:14592808 PMID:18003898, PMID:21454501, PMID:21873635, PMID:11316255 GO_REF:0000044 MGI:3028710 MGI:3764002, RGD:8554079, RGD:13792537, RGD:12903237 NCBI chr 1:87,959,596...88,066,252
Ensembl chr 1:87,959,712...88,066,101
JBrowse link
G Ryr2 ryanodine receptor 2 IDA
IBA
ISO
IEA
PMID:11053140
PMID:21873635
(MGI:3028710|PMID:14592808), (MGI:3620455|PMID:16481613)
GO_REF:0000044
RGD
UniProt
PMID:14592808 PMID:16481613, PMID:11053140, PMID:21873635 GO_REF:0000044 MGI:3028710 MGI:3620455, RGD:8554533, RGD:13792537 NCBI chr17:65,533,998...65,955,606
Ensembl chr17:65,535,403...65,955,606
JBrowse link
G Ryr3 ryanodine receptor 3 ISO
IBA
(MGI:3028710|PMID:14592808)
PMID:21873635
RGD PMID:14592808, PMID:21873635 MGI:3028710, RGD:13792537 NCBI chr 3:104,117,307...104,665,151
Ensembl chr 3:104,118,063...104,504,204
JBrowse link
G Sln sarcolipin ISS
ISO
GO_REF:0000024
(MGI:5751610|PMID:26816378)
UniProt
RGD
PMID:26816378 GO_REF:0000024 MGI:5751610 NCBI chr 8:58,431,407...58,435,654
Ensembl chr 8:58,431,407...58,435,654
JBrowse link
G Stim1 stromal interaction molecule 1 ISO
ISS
(PMID:25326555)
GO_REF:0000024
RGD
UniProt
PMID:25326555 GO_REF:0000024 NCBI chr 1:167,373,894...167,533,412
Ensembl chr 1:167,373,678...167,533,420
JBrowse link
G Tmem109 transmembrane protein 109 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:226,925,114...226,935,710
Ensembl chr 1:226,925,117...226,935,689
JBrowse link
G Tmem38a transmembrane protein 38a IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr16:18,960,197...18,974,942
Ensembl chr16:18,959,315...18,974,770
JBrowse link
G Trdn triadin IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:25,403,390...25,787,664
Ensembl chr 1:25,403,390...25,839,345
JBrowse link
terminal cisterna term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casq1 calsequestrin 1 IDA RGD PMID:11010809 RGD:2313244 NCBI chr13:90,592,676...90,602,365
Ensembl chr13:90,592,681...90,602,365
JBrowse link
G Rtn2 reticulon 2 ISO
ISS
(MGI:4438323|PMID:19720795)
GO_REF:0000024
RGD
UniProt
PMID:19720795 GO_REF:0000024 MGI:4438323 NCBI chr 1:80,195,594...80,208,449
Ensembl chr 1:80,195,532...80,208,448
JBrowse link
G Ryr1 ryanodine receptor 1 IDA PMID:11316255 UniProt PMID:11316255 RGD:12903237 NCBI chr 1:87,959,596...88,066,252
Ensembl chr 1:87,959,712...88,066,101
JBrowse link
terminal cisterna lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casq1 calsequestrin 1 IDA RGD PMID:6355123 RGD:2313258 NCBI chr13:90,592,676...90,602,365
Ensembl chr13:90,592,681...90,602,365
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20659
    cellular anatomical entity 20354
      cytoplasm 11511
        sarcoplasm 81
          junctional membrane complex 8
          sarcoplasmic reticulum + 70
Path 2
Term Annotations click to browse term
  cellular_component 20659
    cellular anatomical entity 20354
      intracellular anatomical structure 14713
        cytoplasm 11511
          sarcoplasm 81
            junctional membrane complex 8
            sarcoplasmic reticulum + 70
paths to the root