Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:sarcoplasm
go back to main search page
Accession:GO:0016528 term browser browse the term
Definition:The cytoplasm of a muscle cell; includes the sarcoplasmic reticulum.
Synonyms:xref: Wikipedia:Sarcoplasm
 never_in_taxon: NCBITaxon:4751 ! Fungi



show annotations for term's descendants           Sort by:
sarcoplasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd2 ankyrin repeat domain 2 located_in ISO (MGI:3796961|PMID:18302940), (MGI:5604137|PMID:24434510) RGD PMID:18302940 PMID:24434510 MGI:3796961 MGI:5604137 NCBI chr 1:240,847,111...240,856,563
Ensembl chr 1:240,847,072...240,856,566
JBrowse link
G Baalc BAALC binder of MAP3K1 and KLF4 located_in ISO (MGI:3530196|PMID:15749074) RGD PMID:15749074 MGI:3530196 NCBI chr 7:69,918,998...69,992,289
Ensembl chr 7:69,918,998...69,992,288
JBrowse link
G Bcl9 BCL9, transcription coactivator located_in ISO (MGI:4368064|PMID:19699733) RGD PMID:19699733 MGI:4368064 NCBI chr 2:184,760,616...184,846,261
Ensembl chr 2:184,760,618...184,786,435
JBrowse link
G Cavin4 caveolae associated protein 4 located_in ISO (MGI:3794929|PMID:18332105) RGD PMID:18332105 MGI:3794929 NCBI chr 5:62,996,906...63,007,677
Ensembl chr 5:62,996,865...63,007,678
JBrowse link
G Cthrc1 collagen triple helix repeat containing 1 located_in ISO
IEA
(MGI:4452466|PMID:18467647)
GO_REF:0000107
RGD
Ensembl
PMID:18467647 GO_REF:0000107 MGI:4452466 NCBI chr 7:70,122,474...70,132,756
Ensembl chr 7:70,122,474...70,132,756
JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 located_in ISO (MGI:3037366|PMID:14688250) RGD PMID:14688250 MGI:3037366 NCBI chr17:19,685,218...19,776,668
Ensembl chr17:19,685,215...19,776,661
JBrowse link
G E2f5 E2F transcription factor 5 IDA RGD PMID:10725332 RGD:1581722 NCBI chr 2:86,997,331...87,012,908
Ensembl chr 2:86,997,332...87,012,990
JBrowse link
G Elavl1 ELAV like RNA binding protein 1 located_in ISO (MGI:3763809|PMID:17475777) RGD PMID:17475777 MGI:3763809 NCBI chr12:2,640,936...2,684,787
Ensembl chr12:2,645,061...2,684,784
JBrowse link
G Fabp3 fatty acid binding protein 3 IDA RGD PMID:2032944 RGD:1582411 NCBI chr 5:142,651,962...142,658,707
Ensembl chr 5:142,651,956...142,658,718
JBrowse link
G Flnc filamin C located_in IDA PMID:21223964 BHF-UCL PMID:21223964 RGD:8554309 NCBI chr 4:58,034,088...58,061,882
Ensembl chr 4:58,034,189...58,061,844
JBrowse link
G Gsn gelsolin located_in ISO
IEA
(PMID:19549824)
GO_REF:0000107
RGD
Ensembl
PMID:19549824 GO_REF:0000107 NCBI chr 3:18,585,166...18,638,404
Ensembl chr 3:18,585,172...18,638,402
JBrowse link
G Habp4 hyaluronan binding protein 4 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:934,931...957,604
Ensembl chr17:935,654...957,565
JBrowse link
G Ifrd1 interferon-related developmental regulator 1 located_in ISO
IEA
(MGI:3575585|PMID:15743821)
GO_REF:0000107
RGD
Ensembl
PMID:15743821 GO_REF:0000107 MGI:3575585 NCBI chr 6:57,269,395...57,317,833
Ensembl chr 6:57,269,384...57,288,990
JBrowse link
G Kcnma1 potassium calcium-activated channel subfamily M alpha 1 located_in ISO (MGI:2680842|PMID:12952984) RGD PMID:12952984 MGI:2680842 NCBI chr15:302,480...1,007,675
Ensembl chr15:302,214...1,001,198
JBrowse link
G Mb myoglobin located_in ISS
ISO
GO_REF:0000024
(PMID:30918256)
UniProt
RGD
PMID:30918256 GO_REF:0000024 NCBI chr 7:108,759,903...108,767,134
Ensembl chr 7:108,759,904...108,767,383
JBrowse link
G Mef2c myocyte enhancer factor 2C located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Myh10 myosin heavy chain 10 located_in ISO (MGI:3052228|PMID:12893741) RGD PMID:12893741 MGI:3052228 NCBI chr10:53,393,901...53,525,174
Ensembl chr10:53,394,389...53,525,165
JBrowse link
G Nfatc1 nuclear factor of activated T-cells 1 IDA MMO:0000679 RGD PMID:30907990 RGD:329337341 NCBI chr18:74,046,422...74,156,041
Ensembl chr18:74,046,904...74,156,028
JBrowse link
G Nol3 nucleolar protein 3 located_in IEA
ISO
GO_REF:0000107
(MGI:3027425|PMID:14645204)
Ensembl
RGD
PMID:14645204 GO_REF:0000107 MGI:3027425 NCBI chr19:33,154,061...33,158,250
Ensembl chr19:33,154,062...33,158,250
JBrowse link
G Plec plectin located_in IDA PMID:21223964 BHF-UCL PMID:21223964 RGD:8554309 NCBI chr 7:107,887,764...107,949,100
Ensembl chr 7:107,887,764...107,945,467
JBrowse link
G Scn3a sodium voltage-gated channel alpha subunit 3 located_in ISO
IEA
(MGI:3625769|PMID:15746173)
GO_REF:0000107
RGD
Ensembl
PMID:15746173 GO_REF:0000107 MGI:3625769 NCBI chr 3:50,146,411...50,258,119
Ensembl chr 3:50,148,139...50,258,119
JBrowse link
G Serpinb5 serpin family B member 5 located_in ISO (MGI:3806752|PMID:18593913) RGD PMID:18593913 MGI:3806752 NCBI chr13:22,985,557...23,005,756
Ensembl chr13:22,985,557...23,005,756
JBrowse link
G Sertad1 SERTA domain containing 1 located_in ISO (MGI:5575588|PMID:24211589) RGD PMID:24211589 MGI:5575588 NCBI chr 1:82,775,692...82,778,961
Ensembl chr 1:82,775,252...82,779,091
JBrowse link
G Slc8a3 solute carrier family 8 member A3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:100,874,359...101,007,989
Ensembl chr 6:100,874,369...101,007,508
JBrowse link
G Spock1 sparc/osteonectin, cwcv and kazal like domains proteoglycan 1 located_in ISO (MGI:2667547|PMID:10842087) RGD PMID:10842087 MGI:2667547 NCBI chr17:6,741,504...7,221,685
Ensembl chr17:6,742,273...7,224,935
JBrowse link
G Tnnt2 troponin T2, cardiac type located_in ISO (MGI:3578095|PMID:15830381) RGD PMID:15830381 MGI:3578095 NCBI chr13:47,267,325...47,285,390
Ensembl chr13:47,267,204...47,285,388
JBrowse link
junctional membrane complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag5 BAG cochaperone 5 part_of ISS
ISO
GO_REF:0000024
(MGI:7311923|PMID:35044787)
UniProt
RGD
PMID:35044787 GO_REF:0000024 MGI:7311923 NCBI chr 6:130,768,467...130,772,122
Ensembl chr 6:130,768,141...130,772,970
JBrowse link
G Casq2 calsequestrin 2 part_of ISO (MGI:4453101|PMID:19920148) RGD PMID:19920148 MGI:4453101 NCBI chr 2:189,526,003...189,582,276
Ensembl chr 2:189,525,960...189,582,267
JBrowse link
G Jph1 junctophilin 1 part_of ISO
IBA
(MGI:1861885|PMID:10949023)
GO_REF:0000033
RGD
GO_Central
PMID:10949023 GO_REF:0000033 MGI:1861885 NCBI chr 5:2,030,227...2,137,171
Ensembl chr 5:2,030,281...2,125,284
JBrowse link
G Jph2 junctophilin 2 part_of ISO
IBA
(MGI:1861885|PMID:10949023)
GO_REF:0000033
RGD
GO_Central
PMID:10949023 GO_REF:0000033 MGI:1861885 NCBI chr 3:151,994,768...152,058,941
Ensembl chr 3:151,994,778...152,058,904
JBrowse link
G Jph3 junctophilin 3 part_of ISO
IBA
(MGI:3654871|PMID:16809425)
GO_REF:0000033
RGD
GO_Central
PMID:16809425 GO_REF:0000033 MGI:3654871 NCBI chr19:49,793,967...49,855,338
Ensembl chr19:49,793,092...49,855,338
JBrowse link
G Jph4 junctophilin 4 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:28,579,579...28,588,903
Ensembl chr15:28,571,568...28,587,573
JBrowse link
G Ryr1 ryanodine receptor 1 part_of ISO (MGI:1342891|PMID:10444070) RGD PMID:10444070 MGI:1342891 NCBI chr 1:84,292,578...84,423,824
Ensembl chr 1:84,292,578...84,423,812
JBrowse link
G Ryr3 ryanodine receptor 3 part_of ISO (MGI:1342891|PMID:10444070) RGD PMID:10444070 MGI:1342891 NCBI chr 3:99,431,755...99,979,125
Ensembl chr 3:99,432,505...99,704,961
JBrowse link
G Trdn triadin part_of IDA
IMP
PMID:22505613 RGD
BHF-UCL
PMID:22505613 PMID:22505613 RGD:7327226, RGD:7327226 NCBI chr 1:23,955,651...24,410,494
Ensembl chr 1:23,955,651...24,410,595
JBrowse link
junctional sarcoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap6 A-kinase anchoring protein 6 located_in IDA PMID:12709444 BHF-UCL PMID:12709444 RGD:8554839 NCBI chr 6:70,184,101...70,624,369
Ensembl chr 6:70,184,175...70,619,738
JBrowse link
G Asph aspartate-beta-hydroxylase located_in ISO (PMID:8530521) RGD PMID:8530521 NCBI chr 5:22,601,581...22,814,107
Ensembl chr 5:22,603,486...22,813,876
JBrowse link
G Jph1 junctophilin 1 located_in ISO (MGI:1861885|PMID:10949023) RGD PMID:10949023 MGI:1861885 NCBI chr 5:2,030,227...2,137,171
Ensembl chr 5:2,030,281...2,125,284
JBrowse link
G Reep5 receptor accessory protein 5 located_in ISO (MGI:6401630|PMID:32075961) RGD PMID:32075961 MGI:6401630 NCBI chr18:25,945,375...25,983,271
Ensembl chr18:25,945,381...25,976,509
JBrowse link
G Trdn triadin is_active_in
located_in
IDA
IBA
IEA
GO_REF:0000033
GO_REF:0000118
PMID:22505613
GO_Central
TreeGrafter
RGD
PMID:7565919 PMID:22505613 GO_REF:0000033 GO_REF:0000118, RGD:2314606, RGD:7327226 NCBI chr 1:23,955,651...24,410,494
Ensembl chr 1:23,955,651...24,410,595
JBrowse link
longitudinal sarcoplasmic reticulum term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 located_in ISO (PMID:16402920) RGD PMID:16402920 NCBI chr12:34,072,710...34,122,142
Ensembl chr12:34,072,683...34,122,101
JBrowse link
G Dhrs7c dehydrogenase/reductase 7C located_in ISO
ISS
(MGI:5306721|PMID:21995425)
GO_REF:0000024
RGD
UniProt
PMID:21995425 GO_REF:0000024 MGI:5306721 NCBI chr10:52,495,262...52,513,338
Ensembl chr10:52,495,262...52,513,338
JBrowse link
ryanodine receptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fkbp1a FKBP prolyl isomerase 1A part_of ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 3:140,040,359...140,060,107
Ensembl chr 3:140,040,278...140,060,743
JBrowse link
G Ryr1 ryanodine receptor 1 part_of ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:84,292,578...84,423,824
Ensembl chr 1:84,292,578...84,423,812
JBrowse link
sarcoplasmic reticulum term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase IDA RGD PMID:15180797 RGD:1642741 NCBI chr 2:204,705,053...204,760,966
Ensembl chr 2:204,705,053...204,760,828
JBrowse link
G Akap6 A-kinase anchoring protein 6 is_active_in
located_in
IDA
IBA
IEA
ISO
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
PMID:7721854
(PMID:10830164), (PMID:7721854)
GO_Central
TreeGrafter
Ensembl
RGD
PMID:7721854 PMID:10830164 PMID:7721854 PMID:7721854 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118, RGD:6902944, RGD:6902944 NCBI chr 6:70,184,101...70,624,369
Ensembl chr 6:70,184,175...70,619,738
JBrowse link
G Akap7 A-kinase anchoring protein 7 IDA RGD PMID:17901878 RGD:2312630 NCBI chr 1:20,087,190...20,217,799
Ensembl chr 1:20,087,373...20,217,797
JBrowse link
G Akt2 AKT serine/threonine kinase 2 IDA MMO:0000662 RGD PMID:29676955 RGD:13703029 NCBI chr 1:82,877,228...82,933,828
Ensembl chr 1:82,883,547...82,933,817
JBrowse link
G Ank1 ankyrin 1 IDA RGD PMID:12631729 PMID:9024692 RGD:633514, RGD:11251703 NCBI chr16:68,876,294...69,054,963
Ensembl chr16:68,877,504...69,054,759
JBrowse link
G Ank3 ankyrin 3 IDA RGD PMID:9664041 RGD:631996 NCBI chr20:18,602,267...19,225,831
Ensembl chr20:18,602,786...19,086,300
JBrowse link
G Atp2a1 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 located_in TAS
ISO
ISS
IDA
(MGI:2153332|PMID:11784029)
GO_REF:0000024
RGD
UniProt
PMID:11784029 PMID:12222829 PMID:8447366 PMID:19029185 PMID:12409282 GO_REF:0000024 MGI:2153332, RGD:727704, RGD:7241223, RGD:2313265, RGD:724593 NCBI chr 1:181,026,606...181,044,859
Ensembl chr 1:181,026,608...181,044,838
JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 located_in TAS
ISO
IDA
(MGI:5314827|PMID:22355118), (MGI:6791656|PMID:29475982), (MGI:85770|PMID:9038922)
(PMID:12804600)
(PMID:16402920)
RGD PMID:9038922 PMID:12804600 PMID:16402920 PMID:22355118 PMID:29475982 More... MGI:5314827 MGI:6791656 MGI:85770, RGD:70642, RGD:7241223, RGD:724593, RGD:2312630 NCBI chr12:34,072,710...34,122,142
Ensembl chr12:34,072,683...34,122,101
JBrowse link
G Atp2a3 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 located_in ISO (PMID:8809064) RGD PMID:8809064 NCBI chr10:57,581,742...57,612,758
Ensembl chr10:57,582,128...57,612,748
JBrowse link
G Cacna1s calcium voltage-gated channel subunit alpha1 S located_in ISO
IEA
(MGI:3028707|PMID:12954602), (MGI:3529615|PMID:15536090), (MGI:3612722|PMID:16403451), (MGI:84458|PMID:8943043)
GO_REF:0000107
RGD
Ensembl
PMID:8943043 PMID:12954602 PMID:15536090 PMID:16403451 GO_REF:0000107 MGI:3028707 MGI:3529615 MGI:3612722 MGI:84458 NCBI chr13:47,493,949...47,564,194
Ensembl chr13:47,493,949...47,564,318
JBrowse link
G Cacna2d1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 located_in ISO
IEA
(MGI:3529615|PMID:15536090)
GO_REF:0000107
RGD
Ensembl
PMID:15536090 GO_REF:0000107 MGI:3529615 NCBI chr 4:18,950,611...19,374,969
Ensembl chr 4:18,951,002...19,374,969
JBrowse link
G Cacnb1 calcium voltage-gated channel auxiliary subunit beta 1 located_in ISO (MGI:84458|PMID:8943043) RGD PMID:8943043 MGI:84458 NCBI chr10:82,998,182...83,018,838
Ensembl chr10:82,998,182...83,018,694
JBrowse link
G Calr calreticulin IDA RGD PMID:8600158 RGD:2313254 NCBI chr19:23,308,525...23,313,420
Ensembl chr19:23,308,351...23,313,414
JBrowse link
G Camk2d calcium/calmodulin-dependent protein kinase II delta located_in ISO (MGI:5466245|PMID:21998325) RGD PMID:21998325 MGI:5466245 NCBI chr 2:215,023,785...215,287,351
Ensembl chr 2:215,024,004...215,286,178
JBrowse link
G Car4 carbonic anhydrase 4 IDA RGD PMID:8911968 RGD:1600749 NCBI chr10:69,827,945...69,836,501
Ensembl chr10:69,827,945...69,836,501
JBrowse link
G Casq1 calsequestrin 1 located_in IDA
ISO
(MGI:2449410|PMID:12419813), (MGI:3037390|PMID:14728599), (MGI:5582187|PMID:7945294) RGD PMID:7945294 PMID:12419813 PMID:14728599 PMID:19029185 MGI:2449410 MGI:3037390 MGI:5582187, RGD:2313265 NCBI chr13:84,670,648...84,680,339
Ensembl chr13:84,670,649...84,680,339
JBrowse link
G Casq2 calsequestrin 2 located_in IDA
ISO
(PMID:9287354) RGD PMID:9287354 PMID:17569730 RGD:2314601 NCBI chr 2:189,526,003...189,582,276
Ensembl chr 2:189,525,960...189,582,267
JBrowse link
G Ccdc78 coiled-coil domain containing 78 located_in ISO (PMID:22818856) RGD PMID:22818856 NCBI chr10:14,808,355...14,812,284
Ensembl chr10:14,807,710...14,812,282
JBrowse link
G Col6a1 collagen type VI alpha 1 chain is_active_in ISO MGI:2153356 (MGI:6511400|PMID:22024752) RGD PMID:22024752 MGI:6511400 NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597
JBrowse link
G ENSRNOG00000067540 located_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr10:31,328,152...31,328,972 JBrowse link
G Fabp3 fatty acid binding protein 3 NOT IDA RGD PMID:2032944 RGD:1582411 NCBI chr 5:142,651,962...142,658,707
Ensembl chr 5:142,651,956...142,658,718
JBrowse link
G Fkbp1a FKBP prolyl isomerase 1A located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 3:140,040,359...140,060,107
Ensembl chr 3:140,040,278...140,060,743
JBrowse link
G Fkbp1b FKBP prolyl isomerase 1B located_in ISO (MGI:5007884|PMID:19578067), (MGI:5288113|PMID:21788490) RGD PMID:19578067 PMID:21788490 MGI:5007884 MGI:5288113 NCBI chr 6:27,832,128...27,850,600
Ensembl chr 6:27,838,802...27,848,653
JBrowse link
G Gstm2 glutathione S-transferase mu 2 located_in ISO (PMID:22406107) RGD PMID:22406107 NCBI chr 2:195,624,015...195,628,774
Ensembl chr 2:195,544,426...195,628,961
JBrowse link
G Gstm7 glutathione S-transferase, mu 7 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:195,566,701...195,572,149
Ensembl chr 2:195,566,701...195,572,203
JBrowse link
G H6pd hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) is_active_in ISO MGI:3624665 (MGI:3793398|PMID:18222920) RGD PMID:18222920 MGI:3793398 NCBI chr 5:160,434,499...160,470,203
Ensembl chr 5:160,438,697...160,470,171
JBrowse link
G Hax1 HCLS1 associated protein X-1 part_of
located_in
is_active_in
IDA
IEA
IBA
ISO
PMID:19920172
GO_REF:0000118
GO_REF:0000033
(MGI:4414726|PMID:19920172)
TreeGrafter
GO_Central
RGD
PMID:19920172 PMID:19920172 GO_REF:0000033 GO_REF:0000118 MGI:4414726, RGD:10047287 NCBI chr 2:175,434,242...175,437,926
Ensembl chr 2:175,434,238...175,437,714
JBrowse link
G Hk2 hexokinase 2 IDA MMO:0000662 RGD PMID:29676955 RGD:13703029 NCBI chr 4:115,234,509...115,283,530
Ensembl chr 4:115,234,509...115,283,530
JBrowse link
G Itpr1 inositol 1,4,5-trisphosphate receptor, type 1 is_active_in
located_in
IDA
IBA
IEA
ISO
GO_REF:0000033
GO_REF:0000107
(MGI:3583849|PMID:16014380)
GO_Central
Ensembl
RGD
PMID:16014380 PMID:16014380 GO_REF:0000033 GO_REF:0000107 MGI:3583849, RGD:7175269 NCBI chr 4:141,187,377...141,554,240
Ensembl chr 4:141,187,418...141,510,491
JBrowse link
G Itpr2 inositol 1,4,5-trisphosphate receptor, type 2 is_active_in
located_in
IDA
IBA
ISO
GO_REF:0000033
(MGI:3583849|PMID:16014380)
GO_Central
RGD
PMID:16014380 PMID:16014380 GO_REF:0000033 MGI:3583849, RGD:7175269 NCBI chr 4:179,028,594...179,434,657
Ensembl chr 4:179,027,281...179,404,164
JBrowse link
G Itpr3 inositol 1,4,5-trisphosphate receptor, type 3 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:5,136,968...5,202,339
Ensembl chr20:5,136,441...5,202,337
JBrowse link
G Jph1 junctophilin 1 located_in
is_active_in
ISO
IBA
(MGI:1861885|PMID:10949023)
GO_REF:0000033
RGD
GO_Central
PMID:10949023 GO_REF:0000033 MGI:1861885 NCBI chr 5:2,030,227...2,137,171
Ensembl chr 5:2,030,281...2,125,284
JBrowse link
G Jph2 junctophilin 2 located_in
is_active_in
ISO
IBA
(MGI:1861885|PMID:10949023)
GO_REF:0000033
RGD
GO_Central
PMID:10949023 GO_REF:0000033 MGI:1861885 NCBI chr 3:151,994,768...152,058,941
Ensembl chr 3:151,994,778...152,058,904
JBrowse link
G Jsrp1 junctional sarcoplasmic reticulum protein 1 located_in
is_active_in
ISO
IBA
(MGI:2677582|PMID:12871958)
GO_REF:0000033
RGD
GO_Central
PMID:12871958 GO_REF:0000033 MGI:2677582 NCBI chr 7:8,889,486...8,906,055
Ensembl chr 7:8,901,609...8,906,055
JBrowse link
G Mtmr12 myotubularin related protein 12 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:61,223,714...61,293,270
Ensembl chr 2:61,223,851...61,293,197
JBrowse link
G Nol3 nucleolar protein 3 located_in IDA PMID:23382383 UniProt PMID:23382383 RGD:10047354 NCBI chr19:33,154,061...33,158,250
Ensembl chr19:33,154,062...33,158,250
JBrowse link
G Nos1 nitric oxide synthase 1 located_in ISO
IEA
(PMID:9892689)
GO_REF:0000107
RGD
Ensembl
PMID:9892689 GO_REF:0000107 NCBI chr12:38,615,111...38,795,492
Ensembl chr12:38,626,714...38,710,945
JBrowse link
G Nox4 NADPH oxidase 4 IDA MMO:0000679 RGD PMID:21896730 RGD:329849108 NCBI chr 1:140,900,886...141,078,844
Ensembl chr 1:140,901,097...141,077,406
JBrowse link
G Oprk1 opioid receptor, kappa 1 IDA RGD PMID:26365878 RGD:401900132 NCBI chr 5:13,860,016...13,877,823
Ensembl chr 5:13,860,021...13,877,823
JBrowse link
G Oprm1 opioid receptor, mu 1 located_in IDA RGD PMID:26686371 RGD:401831050 NCBI chr 1:43,160,057...43,413,409
Ensembl chr 1:43,160,057...43,413,409
JBrowse link
G P3h2 prolyl 3-hydroxylase 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr11:74,634,267...74,775,422
Ensembl chr11:74,634,267...74,775,421
JBrowse link
G Pln phospholamban is_active_in
located_in
IDA
IBA
ISO
GO_REF:0000033
(MGI:85770|PMID:9038922)
GO_Central
RGD
PMID:9038922 PMID:12403631 PMID:17901878 GO_REF:0000033 MGI:85770, RGD:633528, RGD:2312630 NCBI chr20:32,629,537...32,639,559 JBrowse link
G Pomt1 protein-O-mannosyltransferase 1 located_in ISO (MGI:3709220|PMID:17456771) RGD PMID:17456771 MGI:3709220 NCBI chr 3:15,520,717...15,538,579
Ensembl chr 3:15,520,481...15,538,581
JBrowse link
G Pygm glycogen phosphorylase, muscle associated IDA RGD PMID:12967914 PMID:11692172 RGD:1599989, RGD:1599897 NCBI chr 1:203,690,550...203,705,369
Ensembl chr 1:203,690,533...203,705,368
JBrowse link
G Rasd1 ras related dexamethasone induced 1 located_in ISO (MGI:5613473|PMID:19800018) RGD PMID:19800018 MGI:5613473 NCBI chr10:44,766,451...44,775,773
Ensembl chr10:44,766,455...44,768,186
JBrowse link
G Ryr1 ryanodine receptor 1 located_in IDA
ISO
MMO:0000679
(MGI:2153332|PMID:11784029), (MGI:3028707|PMID:12954602), (MGI:3529615|PMID:15536090), (MGI:70290|PMID:7832748), (MGI:84458|PMID:8943043)
RGD PMID:7832748 PMID:8943043 PMID:11784029 PMID:12954602 PMID:15536090 More... MGI:2153332 MGI:3028707 MGI:3529615 MGI:70290 MGI:84458, RGD:7175256, RGD:329849108 NCBI chr 1:84,292,578...84,423,824
Ensembl chr 1:84,292,578...84,423,812
JBrowse link
G Ryr2 ryanodine receptor 2 located_in IDA
ISO
(MGI:5288113|PMID:21788490), (MGI:5431202|PMID:22406107), (MGI:5486563|PMID:12919952)
PMID:11590243
(PMID:10830164), (PMID:12919952)
RGD PMID:10830164 PMID:12919952 PMID:21788490 PMID:22406107 PMID:21807619 More... MGI:5288113 MGI:5431202 MGI:5486563, RGD:7175254, RGD:1599255 NCBI chr17:58,389,925...58,975,641
Ensembl chr17:58,389,925...58,975,142
JBrowse link
G S100a1 S100 calcium binding protein A1 located_in
is_active_in
ISO
IBA
IEA
(PMID:12804600)
GO_REF:0000033
GO_REF:0000044
(MGI:2664619|PMID:12804600)
RGD
GO_Central
UniProt
PMID:12804600 GO_REF:0000033 GO_REF:0000044 MGI:2664619 NCBI chr 2:175,993,922...175,998,765
Ensembl chr 2:175,993,922...175,999,544
JBrowse link
G S100b S100 calcium binding protein B located_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr20:12,372,866...12,381,619
Ensembl chr20:12,372,881...12,394,743
JBrowse link
G Sar1a secretion associated, Ras related GTPase 1A located_in ISO (MGI:3037390|PMID:14728599) RGD PMID:14728599 MGI:3037390 NCBI chr20:29,623,529...29,635,935
Ensembl chr20:29,623,553...29,635,935
JBrowse link
G Sgcd sarcoglycan, delta located_in ISO (MGI:3612722|PMID:16403451), (MGI:4835364|PMID:19931597) RGD PMID:16403451 PMID:19931597 MGI:3612722 MGI:4835364 NCBI chr10:31,346,480...32,328,364
Ensembl chr10:31,280,511...31,724,840
JBrowse link
G Slc2a4 solute carrier family 2 member 4 IDA MMO:0000662 RGD PMID:29676955 RGD:13703029 NCBI chr10:54,666,015...54,671,581
Ensembl chr10:54,666,015...54,671,565
JBrowse link
G Slc30a7 solute carrier family 30 member 7 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:203,855,484...203,922,155
Ensembl chr 2:203,859,175...203,922,132
JBrowse link
G Sln sarcolipin located_in ISO
ISS
(PMID:9575189)
GO_REF:0000024
RGD
UniProt
PMID:9575189 GO_REF:0000024 NCBI chr 8:54,221,389...54,248,110
Ensembl chr 8:54,243,542...54,247,791
JBrowse link
G Sntn sentan, cilia apical structure protein located_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr15:11,512,563...11,525,608
Ensembl chr15:11,512,563...11,525,603
JBrowse link
G Strit1 small transmembrane regulator of ion transport 1 located_in ISO (MGI:5751610|PMID:26816378) RGD PMID:26816378 MGI:5751610 NCBI chr 2:147,935,219...147,938,083
Ensembl chr 2:147,935,222...147,938,083
JBrowse link
G Syne2 spectrin repeat containing nuclear envelope protein 2 located_in ISO (PMID:15671068) RGD PMID:15671068 NCBI chr 6:94,537,088...94,848,085
Ensembl chr 6:94,537,088...94,848,064
JBrowse link
G Thbs1 thrombospondin 1 located_in ISO (MGI:5431143|PMID:22682248) RGD PMID:22682248 MGI:5431143 NCBI chr 3:105,056,293...105,071,445
Ensembl chr 3:105,056,292...105,071,440
JBrowse link
G Thbs4 thrombospondin 4 located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000044
(MGI:5431143|PMID:22682248)
UniProt
RGD
PMID:22682248 GO_REF:0000024 GO_REF:0000044 MGI:5431143 NCBI chr 2:23,983,158...24,025,289
Ensembl chr 2:23,983,158...24,026,313
JBrowse link
G Tmem38a transmembrane protein 38a located_in IEA
ISO
GO_REF:0000107
(MGI:3715564|PMID:17611541)
Ensembl
RGD
PMID:17611541 GO_REF:0000107 MGI:3715564 NCBI chr16:17,258,160...17,274,204
Ensembl chr16:17,258,164...17,273,415
JBrowse link
G Trdn triadin located_in IDA
ISO
(PMID:9287354) RGD PMID:9287354 PMID:21811790 RGD:7327228 NCBI chr 1:23,955,651...24,410,494
Ensembl chr 1:23,955,651...24,410,595
JBrowse link
G Xdh xanthine dehydrogenase located_in IEA
ISO
GO_REF:0000107
(MGI:5613473|PMID:19800018)
Ensembl
RGD
PMID:19800018 GO_REF:0000107 MGI:5613473 NCBI chr 6:21,530,463...21,592,172
Ensembl chr 6:21,530,113...21,592,268
JBrowse link
sarcoplasmic reticulum lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Calr calreticulin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr19:23,308,525...23,313,420
Ensembl chr19:23,308,351...23,313,414
JBrowse link
G Calu calumenin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:57,949,086...57,976,589
Ensembl chr 4:57,948,997...57,976,593
JBrowse link
G Casq1 calsequestrin 1 located_in
is_active_in
ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(MGI:3625212|PMID:16600288), (MGI:5306707|PMID:22049211)
UniProt
GO_Central
RGD
PMID:16600288 PMID:22049211 GO_REF:0000024 GO_REF:0000033 MGI:3625212 MGI:5306707 NCBI chr13:84,670,648...84,680,339
Ensembl chr13:84,670,649...84,680,339
JBrowse link
G Casq2 calsequestrin 2 located_in
is_active_in
IEA
ISO
IBA
GO_REF:0000044
(MGI:4453101|PMID:19920148)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:19920148 GO_REF:0000033 GO_REF:0000044 MGI:4453101 NCBI chr 2:189,526,003...189,582,276
Ensembl chr 2:189,525,960...189,582,267
JBrowse link
G Hsp90b1 heat shock protein 90 beta family member 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:21,110,431...21,124,762
Ensembl chr 7:21,110,457...21,124,788
JBrowse link
G Manf mesencephalic astrocyte-derived neurotrophic factor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:107,500,856...107,551,595
Ensembl chr 8:107,548,352...107,551,438
JBrowse link
sarcoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07005775.1 located_in IEA GO_REF:0000044
GO_REF:0000107
UniProt
Ensembl
GO_REF:0000044 GO_REF:0000107
G Asph aspartate-beta-hydroxylase located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:22,601,581...22,814,107
Ensembl chr 5:22,603,486...22,813,876
JBrowse link
G Atp2a1 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
GO_REF:0000044
(MGI:5614883|PMID:25640239), (MGI:5751610|PMID:26816378)
UniProt
Ensembl
RGD
PMID:25640239 PMID:26816378 GO_REF:0000024 GO_REF:0000044 GO_REF:0000107 MGI:5614883 MGI:5751610 NCBI chr 1:181,026,606...181,044,859
Ensembl chr 1:181,026,608...181,044,838
JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 located_in IC
IEA
ISO
GO_REF:0000044
(PMID:16402920)
UniProt
RGD
PMID:16402920 PMID:21300842 GO_REF:0000044, RGD:6904139 NCBI chr12:34,072,710...34,122,142
Ensembl chr12:34,072,683...34,122,101
JBrowse link
G Atp2a3 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:57,581,742...57,612,758
Ensembl chr10:57,582,128...57,612,748
JBrowse link
G Camk2b calcium/calmodulin-dependent protein kinase II beta located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:80,845,206...80,934,172
Ensembl chr14:80,845,238...80,933,994
JBrowse link
G Camk2d calcium/calmodulin-dependent protein kinase II delta located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:215,023,785...215,287,351
Ensembl chr 2:215,024,004...215,286,178
JBrowse link
G Camk2g calcium/calmodulin-dependent protein kinase II gamma located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr15:3,504,017...3,563,050
Ensembl chr15:3,504,085...3,563,050
JBrowse link
G Casq1 calsequestrin 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:84,670,648...84,680,339
Ensembl chr13:84,670,649...84,680,339
JBrowse link
G Cherp calcium homeostasis endoplasmic reticulum protein located_in IDA PMID:21454501 UniProt PMID:21454501 RGD:8554079 NCBI chr16:17,367,455...17,380,507
Ensembl chr16:17,367,455...17,380,507
JBrowse link
G Dhrs7c dehydrogenase/reductase 7C located_in ISS
ISO
GO_REF:0000024
(MGI:5306721|PMID:21995425), (MGI:6810289|PMID:27806939), (MGI:6814709|PMID:22143674)
UniProt
RGD
PMID:21995425 PMID:22143674 PMID:27806939 GO_REF:0000024 MGI:5306721 MGI:6810289 MGI:6814709 NCBI chr10:52,495,262...52,513,338
Ensembl chr10:52,495,262...52,513,338
JBrowse link
G Dmpk DM1 protein kinase located_in ISO (MGI:3575053|PMID:15598648) RGD PMID:15598648 MGI:3575053 NCBI chr 1:78,730,255...78,740,585
Ensembl chr 1:78,730,275...78,740,593
JBrowse link
G ENSRNOG00000067970 located_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 3:99,631,867...99,979,128 JBrowse link
G Fkbp1a FKBP prolyl isomerase 1A located_in
is_active_in
ISO
IEA
IBA
(MGI:3028710|PMID:14592808)
GO_REF:0000118
GO_REF:0000033
RGD
TreeGrafter
GO_Central
PMID:14592808 GO_REF:0000033 GO_REF:0000118 MGI:3028710 NCBI chr 3:140,040,359...140,060,107
Ensembl chr 3:140,040,278...140,060,743
JBrowse link
G Fkbp1b FKBP prolyl isomerase 1B located_in
is_active_in
ISO
IEA
IBA
(MGI:3028710|PMID:14592808), (MGI:3620455|PMID:16481613)
GO_REF:0000118
GO_REF:0000033
RGD
TreeGrafter
GO_Central
PMID:14592808 PMID:16481613 GO_REF:0000033 GO_REF:0000118 MGI:3028710 MGI:3620455 NCBI chr 6:27,832,128...27,850,600
Ensembl chr 6:27,838,802...27,848,653
JBrowse link
G Hrc histidine rich calcium binding protein located_in ISO (MGI:3625212|PMID:16600288) RGD PMID:16600288 MGI:3625212 NCBI chr 1:95,813,262...95,816,987
Ensembl chr 1:95,813,253...95,816,984
JBrowse link
G Itpr2 inositol 1,4,5-trisphosphate receptor, type 2 located_in ISO
IEA
(PMID:10828023)
GO_REF:0000107
RGD
Ensembl
PMID:10828023 GO_REF:0000107 NCBI chr 4:179,028,594...179,434,657
Ensembl chr 4:179,027,281...179,404,164
JBrowse link
G Jph2 junctophilin 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:151,994,768...152,058,941
Ensembl chr 3:151,994,778...152,058,904
JBrowse link
G Klhl41 kelch-like family member 41 located_in
is_active_in
ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(MGI:5586786|PMID:24268659)
(PMID:24268659)
UniProt
GO_Central
RGD
PMID:24268659 GO_REF:0000024 GO_REF:0000033 MGI:5586786 NCBI chr 3:54,434,291...54,447,415
Ensembl chr 3:54,434,234...54,449,222
JBrowse link
G Mrln myoregulin located_in ISO (MGI:5614883|PMID:25640239) RGD PMID:25640239 MGI:5614883 NCBI chr20:18,406,789...18,423,805
Ensembl chr20:18,406,707...18,428,418
JBrowse link
G Nos1 nitric oxide synthase 1 located_in ISO (MGI:5613473|PMID:19800018) RGD PMID:19800018 MGI:5613473 NCBI chr12:38,615,111...38,795,492
Ensembl chr12:38,626,714...38,710,945
JBrowse link
G Nos1ap nitric oxide synthase 1 adaptor protein located_in ISO (MGI:5613473|PMID:19800018) RGD PMID:19800018 MGI:5613473 NCBI chr13:82,547,799...82,820,999
Ensembl chr13:82,530,577...82,820,949
JBrowse link
G Pln phospholamban located_in ISS
ISO
GO_REF:0000024
(MGI:5751610|PMID:26816378)
UniProt
RGD
PMID:26816378 GO_REF:0000024 MGI:5751610 NCBI chr20:32,629,537...32,639,559 JBrowse link
G Reep5 receptor accessory protein 5 located_in ISO (MGI:6401630|PMID:32075961) RGD PMID:32075961 MGI:6401630 NCBI chr18:25,945,375...25,983,271
Ensembl chr18:25,945,381...25,976,509
JBrowse link
G Rtn2 reticulon 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:78,935,056...78,948,069
Ensembl chr 1:78,935,104...78,948,069
JBrowse link
G Ryr1 ryanodine receptor 1 located_in
is_active_in
IDA
IBA
IEA
ISO
PMID:21454501
GO_REF:0000033
PMID:11316255
GO_REF:0000117
(MGI:3028710|PMID:14592808), (MGI:3764002|PMID:18003898)
(PMID:7556644)
GO_Central
UniProt
RGD
PMID:7556644 PMID:14592808 PMID:18003898 PMID:21454501 PMID:11316255 GO_REF:0000033 GO_REF:0000117 MGI:3028710 MGI:3764002, RGD:8554079, RGD:12903237 NCBI chr 1:84,292,578...84,423,824
Ensembl chr 1:84,292,578...84,423,812
JBrowse link
G Ryr2 ryanodine receptor 2 located_in
is_active_in
IDA
IBA
ISS
IEA
ISO
PMID:11053140
GO_REF:0000033
GO_REF:0000024
GO_REF:0000117
(MGI:3028710|PMID:14592808), (MGI:3620455|PMID:16481613)
GO_Central
UniProt
RGD
PMID:14592808 PMID:16481613 PMID:11053140 GO_REF:0000024 GO_REF:0000033 GO_REF:0000117 MGI:3028710 MGI:3620455, RGD:8554533 NCBI chr17:58,389,925...58,975,641
Ensembl chr17:58,389,925...58,975,142
JBrowse link
G Ryr3 ryanodine receptor 3 located_in ISO (MGI:3028710|PMID:14592808) RGD PMID:14592808 MGI:3028710 NCBI chr 3:99,431,755...99,979,125
Ensembl chr 3:99,432,505...99,704,961
JBrowse link
G Slc30a7 solute carrier family 30 member 7 located_in IDA PMID:28232492 UniProt PMID:28232492 RGD:155888558 NCBI chr 2:203,855,484...203,922,155
Ensembl chr 2:203,859,175...203,922,132
JBrowse link
G Sln sarcolipin located_in ISS
ISO
GO_REF:0000024
(MGI:5751610|PMID:26816378)
UniProt
RGD
PMID:26816378 GO_REF:0000024 MGI:5751610 NCBI chr 8:54,221,389...54,248,110
Ensembl chr 8:54,243,542...54,247,791
JBrowse link
G Stim1 stromal interaction molecule 1 located_in ISS
ISO
GO_REF:0000024
(PMID:25326555)
UniProt
RGD
PMID:25326555 GO_REF:0000024 NCBI chr 1:156,656,246...156,818,777
Ensembl chr 1:156,656,013...156,818,363
JBrowse link
G Strit1 small transmembrane regulator of ion transport 1 located_in ISO (MGI:5751610|PMID:26816378) RGD PMID:26816378 MGI:5751610 NCBI chr 2:147,935,219...147,938,083
Ensembl chr 2:147,935,222...147,938,083
JBrowse link
G Tmem109 transmembrane protein 109 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:207,519,628...207,530,245
Ensembl chr 1:207,519,624...207,530,215
JBrowse link
G Tmem38a transmembrane protein 38a located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr16:17,258,160...17,274,204
Ensembl chr16:17,258,164...17,273,415
JBrowse link
terminal cisterna term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casq1 calsequestrin 1 IDA RGD PMID:11010809 RGD:2313244 NCBI chr13:84,670,648...84,680,339
Ensembl chr13:84,670,649...84,680,339
JBrowse link
G Rtn2 reticulon 2 part_of
located_in
ISS
ISO
GO_REF:0000024
(MGI:4438323|PMID:19720795)
UniProt
RGD
PMID:19720795 GO_REF:0000024 MGI:4438323 NCBI chr 1:78,935,056...78,948,069
Ensembl chr 1:78,935,104...78,948,069
JBrowse link
G Ryr1 ryanodine receptor 1 located_in IDA PMID:11316255 UniProt PMID:11316255 RGD:12903237 NCBI chr 1:84,292,578...84,423,824
Ensembl chr 1:84,292,578...84,423,812
JBrowse link
terminal cisterna lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casq1 calsequestrin 1 IDA RGD PMID:6355123 RGD:2313258 NCBI chr13:84,670,648...84,680,339
Ensembl chr13:84,670,649...84,680,339
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21308
    cellular anatomical entity 21148
      cytoplasm 12285
        sarcoplasm 109
          junctional membrane complex 9
          sarcoplasmic reticulum + 82
Path 2
Term Annotations click to browse term
  cellular_component 21308
    cellular anatomical entity 21148
      intracellular anatomical structure 15584
        cytoplasm 12285
          sarcoplasm 109
            junctional membrane complex 9
            sarcoplasmic reticulum + 82
paths to the root