Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:gene silencing
go back to main search page
Accession:GO:0016458 term browser browse the term
Definition:Any process carried out at the cellular level that results in either long-term transcriptional repression via action on chromatin structure or RNA mediated, post-transcriptional repression of gene expression.
Comment:This is a rather broad grouping term. While it was originally defined for long-term, heritable, epigenetic effects, short term effects on expression mediated by RNA are also frequently referred to as gene silencing, and are grouped under this class.
Synonyms:related_synonym: long-term maintenance of gene inactivation
 xref: Wikipedia:Gene_silencing


show annotations for term's descendants           Sort by:
 
gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp1a charged multivesicular body protein 1A involved_in ISO (PMID:11559747) RGD PMID:11559747 NCBI chr19:56,001,724...56,010,004
Ensembl chr19:56,001,724...56,010,004
JBrowse link
G Dnmt1 DNA methyltransferase 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:3687778|PMID:10615135)
Ensembl
RGD
PMID:10615135 GO_REF:0000107 MGI:3687778 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 acts_upstream_of_or_within
involved_in
IEA
ISO
GO_REF:0000107
(MGI:3054495|PMID:15340049)
Ensembl
RGD
PMID:15340049 GO_REF:0000107 MGI:3054495 NCBI chr 1:216,293,087...216,630,339
Ensembl chr 1:216,293,087...216,630,339
JBrowse link
G Kmt2b lysine methyltransferase 2B acts_upstream_of_or_within ISO MGI:3056522|MGI:3623309 (MGI:4849597|PMID:20808952) RGD PMID:20808952 MGI:4849597 NCBI chr 1:89,022,889...89,042,176
Ensembl chr 1:89,023,200...89,042,176
JBrowse link
G Sox6 SRY-box transcription factor 6 acts_upstream_of_or_within ISO MGI:2681117 (MGI:3692153|PMID:16462943) RGD PMID:16462943 MGI:3692153 NCBI chr 1:185,631,702...186,186,192
Ensembl chr 1:185,673,177...186,182,829
JBrowse link
G Srcap Snf2-related CREBBP activator protein involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:198,957,764...199,007,576
Ensembl chr 1:198,960,542...199,007,347
JBrowse link
chromatin silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07062859.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 6:11,859,630...11,860,001 JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:85,360,439...85,370,283
Ensembl chr17:85,364,483...85,368,208
JBrowse link
G Ctbp1 C-terminal binding protein 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:21102443)
Ensembl
RGD
PMID:21102443 GO_REF:0000107 NCBI chr14:82,762,109...82,789,350
Ensembl chr14:82,762,190...82,789,319
JBrowse link
G Eed embryonic ectoderm development involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:154,189,252...154,216,340
Ensembl chr 1:154,189,260...154,216,340
JBrowse link
G H1f0 H1.0 linker histone involved_in ISO UniProtKB:P09429 (PMID:19158276) RGD PMID:19158276 NCBI chr 7:120,260,776...120,262,636 JBrowse link
G H2ab3 H2A.B variant histone 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:88,602,135...88,602,485
Ensembl chr  X:88,602,135...88,602,485
JBrowse link
G H2ac1 H2A clustered histone 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:43,422,454...43,422,846
Ensembl chr17:43,422,454...43,422,846
JBrowse link
G H2ac12 H2A clustered histone 12 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:44,527,990...44,528,557
Ensembl chr17:44,528,125...44,528,511
JBrowse link
G H2ac20 H2A clustered histone 20 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:198,360,271...198,360,735
Ensembl chr 2:198,360,301...198,360,678
JBrowse link
G H2ac21 H2A clustered histone 21 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:198,359,754...198,360,146
Ensembl chr 2:198,359,754...198,360,146
JBrowse link
G H2aj H2A.J histone involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:170,766,900...170,767,384
Ensembl chr 4:170,766,900...170,767,382
JBrowse link
G H2ap H2A.P histone involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:13,989,401...13,989,955
Ensembl chr  X:13,989,401...13,989,955
JBrowse link
G H2ax H2A.X variant histone involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 8:48,665,652...48,666,981
Ensembl chr 8:48,665,652...48,666,981
JBrowse link
G H2az1 H2A.Z variant histone 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:243,105,224...243,107,333
Ensembl chr 2:243,105,674...243,106,956
JBrowse link
G H2az2 H2A.Z variant histone 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr14:86,687,782...86,706,639
Ensembl chr14:86,687,782...86,706,626
JBrowse link
G Hells helicase, lymphoid specific acts_upstream_of_or_within ISO MGI:2178586 (MGI:3510059|PMID:15448183) RGD PMID:15448183 MGI:3510059 NCBI chr 1:257,901,856...257,953,889
Ensembl chr 1:257,766,691...257,949,183
Ensembl chr 1:257,766,691...257,949,183
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 involved_in ISO (PMID:12920187) RGD PMID:12920187 NCBI chr10:82,775,691...82,776,487
Ensembl chr10:82,775,691...82,776,487
JBrowse link
G Hist1h2ac histone cluster 1 H2A family member C involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:44,520,484...44,521,142
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G Hist1h2af histone cluster 1 H2A family member F involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:43,627,237...43,627,629
Ensembl chr17:43,627,237...43,627,629
JBrowse link
G Hist1h2ah histone cluster 1 H2A family member H involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:43,632,354...43,632,851
Ensembl chr17:44,747,796...44,748,188
Ensembl chr17:44,747,796...44,748,188
JBrowse link
G Hist1h2ai histone cluster 1, H2ai involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:44,758,412...44,759,675
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G hist1h2ail2 histone cluster 1, H2ai-like2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:44,794,087...44,794,563
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G Hist1h2ak histone cluster 1, H2ak involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:44,840,990...44,841,382
Ensembl chr17:44,840,990...44,841,382
JBrowse link
G Hist1h2an histone cluster 1, H2an involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:43,779,174...43,779,775
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G Hist1h2ao histone cluster 1, H2ao involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:44,744,534...44,744,931
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Hist2h2aa2 histone cluster 2 H2A family member A2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:198,381,678...198,382,247
Ensembl chr 2:198,388,809...198,389,201
Ensembl chr 2:198,388,809...198,389,201
JBrowse link
G Hist2h2aa3 histone cluster 2 H2A family member A3 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:198,388,766...198,389,293
Ensembl chr 2:198,388,809...198,389,201
Ensembl chr 2:198,388,809...198,389,201
JBrowse link
G Hist3h2a histone cluster 3, H2a involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:45,297,603...45,299,155 JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO UniProtKB:P07305 (PMID:19158276) RGD PMID:19158276 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Kdm1a lysine demethylase 1A involved_in ISO (MGI:4461095|PMID:20123967) RGD PMID:20123967 MGI:4461095 NCBI chr 5:154,909,003...154,965,171
Ensembl chr 5:154,909,003...154,965,171
JBrowse link
G Kmt2d lysine methyltransferase 2D involved_in ISO (MGI:4849597|PMID:20808952) RGD PMID:20808952 MGI:4849597 NCBI chr 7:140,507,137...140,542,479
Ensembl chr 7:140,489,492...140,546,908
JBrowse link
G LOC100363125 rCG42854-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:13,991,860...13,992,606
Ensembl chr  X:13,992,064...13,992,429
JBrowse link
G LOC100910554 histone H2A type 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:44,738,552...44,739,195
Ensembl chr17:44,738,643...44,739,035
JBrowse link
G LOC103690002 histone H2A.J involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:170,148,955...170,149,479
Ensembl chr 4:170,149,029...170,149,418
JBrowse link
G LOC103690190 histone H2A type 1-E involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:44,747,686...44,748,229
Ensembl chr17:44,747,796...44,748,188
Ensembl chr17:44,747,796...44,748,188
JBrowse link
G LOC103692167 polycomb group RING finger protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:114,776,680...114,779,447
Ensembl chr 4:114,776,797...114,779,446
JBrowse link
G LOC680063 similar to histone 2a involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537
G LOC684773 similar to histone 2a involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:43,777,353...43,777,827
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
G Macroh2a2 macroH2A.2 histone involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr20:31,352,924...31,402,483
Ensembl chr20:31,352,960...31,402,483
JBrowse link
G Mecp2 methyl CpG binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2137311 (MGI:3530434|PMID:15608638)
GO_REF:0000107
RGD
Ensembl
PMID:15608638 GO_REF:0000107 MGI:3530434 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Morf4l1 mortality factor 4 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 8:97,473,454...97,494,974
Ensembl chr 8:97,474,092...97,494,834
JBrowse link
G Morf4l2 mortality factor 4 like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:107,394,468...107,405,564
Ensembl chr  X:107,394,486...107,405,564
JBrowse link
G Msl3 MSL complex subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:27,015,826...27,033,562
Ensembl chr  X:27,015,884...27,033,555
JBrowse link
G Msl3l2 male-specific lethal 3-like 2 (Drosophila) involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr20:37,580,002...37,590,015
Ensembl chr20:37,587,687...37,589,198
JBrowse link
G Pcgf1 polycomb group ring finger 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:113,911,129...113,913,718
Ensembl chr 4:113,910,685...113,913,687
JBrowse link
G Pcgf2 polycomb group ring finger 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:85,631,829...85,642,591
Ensembl chr10:85,632,819...85,636,902
JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent, 1D involved_in ISO (MGI:5551345|PMID:24135283) RGD PMID:24135283 MGI:5551345 NCBI chr10:72,909,550...72,945,884
Ensembl chr10:72,909,550...72,945,884
JBrowse link
G RGD1562306 similar to H2A histone family, member Z involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:11,859,622...11,860,016 JBrowse link
G RGD1562871 similar to BMI1-like protein involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:79,546,624...79,547,767
Ensembl chr  X:79,546,624...79,547,767
JBrowse link
G Tnp1 transition protein 1 involved_in ISO
ISS
(PMID:11315969)
GO_REF:0000024
RGD
UniProt
PMID:11315969 GO_REF:0000024 NCBI chr 9:80,294,837...80,295,446
Ensembl chr 9:80,294,840...80,295,446
JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in ISO
IBA
(MGI:4431162|PMID:20080676)
PMID:21873635
RGD PMID:20080676, PMID:21873635, PMID:21873635 MGI:4431162, RGD:13792537, RGD:13792537 NCBI chr 9:16,003,058...16,080,152
Ensembl chr 9:16,003,058...16,080,152
JBrowse link
chromatin silencing at telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dot1l DOT1 like histone lysine methyltransferase involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:11,786,105...11,824,742
Ensembl chr 7:11,786,105...11,824,742
JBrowse link
G Dpy30 dpy-30 histone methyltransferase complex regulatory subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:22,296,128...22,316,894
Ensembl chr 6:22,296,128...22,316,894
JBrowse link
G Dydc1 DPY30 domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr16:18,648,030...18,667,962
Ensembl chr16:18,648,866...18,667,968
JBrowse link
G Dydc2 DPY30 domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr16:18,635,235...18,649,074
Ensembl chr16:18,635,388...18,645,941
JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO UniProtKB:P38827 (MGI:892875|PMID:9214638) RGD PMID:9214638 MGI:892875 NCBI chr10:89,104,026...89,139,978
Ensembl chr10:89,104,027...89,130,339
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in ISO UniProtKB:P38827 (PMID:9214638) RGD PMID:9214638 NCBI chr 4:77,284,404...77,347,011
Ensembl chr 4:77,284,404...77,347,011
JBrowse link
G Hat1 histone acetyltransferase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:58,022,395...58,070,067
Ensembl chr 3:58,022,238...58,070,068
JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in ISO (MGI:5584328|PMID:24735877) RGD PMID:24735877 MGI:5584328 NCBI chr 3:37,599,540...37,648,818
Ensembl chr 3:37,599,728...37,647,631
JBrowse link
conversion of ds siRNA to ss siRNA involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III involved_in ISO (PMID:19701182) RGD PMID:19701182 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002945.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 1:89,967,031...90,000,386 JBrowse link
G Ajuba ajuba LIM protein involved_in ISO (PMID:20616046) RGD PMID:20616046 NCBI chr15:33,208,210...33,218,456
Ensembl chr15:33,208,216...33,218,456
JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 involved_in ISO (PMID:23172285), (PMID:24768540) RGD PMID:23172285 PMID:24768540 NCBI chr19:9,668,186...9,761,605
Ensembl chr19:9,668,186...9,761,605
JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in ISO
ISS
(PMID:17507929)
GO_REF:0000024
RGD
UniProt
PMID:17507929 GO_REF:0000024 NCBI chr 3:151,356,867...151,363,201
Ensembl chr 3:151,356,868...151,363,115
JBrowse link
G Limd1 LIM domain containing 1 involved_in ISO (PMID:20616046) RGD PMID:20616046 NCBI chr 8:132,553,218...132,598,826
Ensembl chr 8:132,553,218...132,598,812
JBrowse link
G Mir1 microRNA 1 acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871), (MGI:5575655|PMID:17397913) RGD PMID:15361871 PMID:17397913 MGI:3510301 MGI:5575655 NCBI chr18:2,054,933...2,055,019 JBrowse link
G Mir100 microRNA 100 acts_upstream_of_or_within ISO (MGI:4822296|PMID:20439489) RGD PMID:20439489 MGI:4822296 NCBI chr 8:45,746,948...45,747,027
Ensembl chr 8:45,746,948...45,747,027
JBrowse link
G Mir107 microRNA 107 acts_upstream_of_or_within ISO (MGI:5013695|PMID:21415270) RGD PMID:21415270 MGI:5013695 NCBI chr 1:253,128,250...253,128,336
Ensembl chr 1:253,128,250...253,128,336
JBrowse link
G Mir10a microRNA 10a acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:3510301 NCBI chr10:84,165,950...84,166,059
Ensembl chr10:84,165,950...84,166,059
JBrowse link
G Mir124-1 microRNA 124-1 acts_upstream_of_or_within ISO (MGI:3706460|PMID:17403776), (MGI:4438512|PMID:19898466), (MGI:5303045|PMID:21857657) RGD PMID:17403776 PMID:19898466 PMID:21857657 MGI:3706460 MGI:4438512 MGI:5303045 NCBI chr15:47,964,298...47,964,382
Ensembl chr15:47,964,298...47,964,382
JBrowse link
G Mir124-2 microRNA 124-2 acts_upstream_of_or_within ISO (MGI:3706460|PMID:17403776), (MGI:4438512|PMID:19898466), (MGI:5303045|PMID:21857657) RGD PMID:17403776 PMID:19898466 PMID:21857657 MGI:3706460 MGI:4438512 MGI:5303045 NCBI chr 2:102,311,603...102,311,711
Ensembl chr 2:102,311,603...102,311,711
JBrowse link
G Mir124-3 microRNA 124-3 acts_upstream_of_or_within ISO (MGI:3706460|PMID:17403776), (MGI:4438512|PMID:19898466), (MGI:5303045|PMID:21857657) RGD PMID:17403776 PMID:19898466 PMID:21857657 MGI:3706460 MGI:4438512 MGI:5303045 NCBI chr 3:176,406,205...176,406,291
Ensembl chr 3:176,406,205...176,406,291
JBrowse link
G Mir125a microRNA 125a acts_upstream_of_or_within ISO (MGI:4438512|PMID:19898466) RGD PMID:19898466 MGI:4438512 NCBI chr 1:59,704,827...59,704,911
Ensembl chr 1:59,704,827...59,704,911
JBrowse link
G Mir125b1 microRNA 125b-1 involved_in ISO (MGI:5882697|PMID:28281528) RGD PMID:28281528 MGI:5882697 NCBI chr 8:45,798,260...45,798,346
Ensembl chr 8:45,798,260...45,798,346
JBrowse link
G Mir125b2 microRNA 125b-2 involved_in ISO (MGI:5882697|PMID:28281528) RGD PMID:28281528 MGI:5882697 NCBI chr11:16,097,346...16,097,433 JBrowse link
G Mir133a1 microRNA 133a-1 acts_upstream_of_or_within ISO MGI:3822152|MGI:3822154 (MGI:3820745|PMID:19015276) RGD PMID:19015276 MGI:3820745 NCBI chr18:2,052,478...2,052,564 JBrowse link
G Mir137 microRNA 137 acts_upstream_of_or_within ISO (MGI:4822296|PMID:20439489) RGD PMID:20439489 MGI:4822296 NCBI chr 2:221,658,106...221,658,207
Ensembl chr 2:221,658,106...221,658,207
JBrowse link
G Mir155 microRNA 155 acts_upstream_of_or_within ISO (MGI:4833768|PMID:20548288) RGD PMID:20548288 MGI:4833768 NCBI chr11:24,176,603...24,176,667
Ensembl chr11:24,176,603...24,176,667
JBrowse link
G Mir17 microRNA 17 acts_upstream_of_or_within ISO MGI:3790968 (MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:5140688 NCBI chr15:100,179,879...100,179,962
Ensembl chr15:100,179,879...100,179,962
JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within ISO (MGI:6108693|PMID:28819115) RGD PMID:28819115 MGI:6108693 NCBI chr 4:57,463,569...57,463,678
Ensembl chr 4:57,463,569...57,463,678
JBrowse link
G Mir196a microRNA 196a acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:3510301 NCBI chr 7:144,584,235...144,584,344
Ensembl chr 7:144,584,235...144,584,344
JBrowse link
G Mir196c microRNA 196c acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:3510301 NCBI chr10:84,113,578...84,113,657
Ensembl chr10:84,113,578...84,113,657
JBrowse link
G Mir1b microRNA 1b acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:3510301 NCBI chr 3:175,769,716...175,769,800
Ensembl chr 3:175,769,716...175,769,800
JBrowse link
G Mir200b microRNA 200b acts_upstream_of_or_within ISO (MGI:5013695|PMID:21415270) RGD PMID:21415270 MGI:5013695 NCBI chr 5:173,490,144...173,490,238
Ensembl chr 5:173,490,144...173,490,238
JBrowse link
G Mir205 microRNA 205 acts_upstream_of_or_within ISO (MGI:5514438|PMID:23974039) RGD PMID:23974039 MGI:5514438 NCBI chr13:112,233,283...112,233,390
Ensembl chr13:112,233,283...112,233,390
JBrowse link
G Mir21 microRNA 21 acts_upstream_of_or_within
involved_in
ISO (MGI:5693365|PMID:19147652), (MGI:6208917|PMID:29925839)
(MGI:6208917|PMID:29925839)
RGD PMID:19147652 PMID:29925839 MGI:5693365 MGI:6208917 NCBI chr10:73,902,210...73,902,301
Ensembl chr10:73,902,210...73,902,301
JBrowse link
G Mir223 microRNA 223 acts_upstream_of_or_within ISO MGI:3811186 (MGI:3811177|PMID:18278031) RGD PMID:18278031 MGI:3811177 NCBI chr  X:65,367,812...65,367,921
Ensembl chr  X:65,367,812...65,367,921
JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within ISO (MGI:5516374|PMID:24101522) RGD PMID:24101522 MGI:5516374 NCBI chr19:25,318,582...25,318,656
Ensembl chr19:25,318,582...25,318,656
JBrowse link
G Mir26a microRNA 26a acts_upstream_of_or_within ISO (MGI:5494382|PMID:22210897) RGD PMID:22210897 MGI:5494382 NCBI chr 8:127,714,441...127,714,530
Ensembl chr 8:127,714,441...127,714,530
JBrowse link
G Mir26b microRNA 26b acts_upstream_of_or_within ISO (MGI:5494382|PMID:22210897) RGD PMID:22210897 MGI:5494382 NCBI chr 9:81,675,275...81,675,359
Ensembl chr 9:81,675,275...81,675,359
JBrowse link
G Mir301a microRNA 301a acts_upstream_of_or_within ISO (MGI:5426073|PMID:22517757) RGD PMID:22517757 MGI:5426073 NCBI chr10:74,417,746...74,417,845
Ensembl chr10:74,417,746...74,417,845
JBrowse link
G Mir30a microRNA 30a acts_upstream_of_or_within ISO (MGI:3838679|PMID:19185580) RGD PMID:19185580 MGI:3838679 NCBI chr 9:29,542,635...29,542,705
Ensembl chr 9:29,542,635...29,542,705
JBrowse link
G Mir324 microRNA 324 acts_upstream_of_or_within ISO (MGI:5576401|PMID:24882011) RGD PMID:24882011 MGI:5576401 NCBI chr10:56,621,126...56,621,208
Ensembl chr10:56,621,124...56,621,212
JBrowse link
G Mir34a microRNA 34a acts_upstream_of_or_within ISO (MGI:4822296|PMID:20439489), (MGI:5613071|PMID:25043055) RGD PMID:20439489 PMID:25043055 MGI:4822296 MGI:5613071 NCBI chr 5:167,092,491...167,092,592
Ensembl chr 5:167,092,491...167,092,592
JBrowse link
G Mir3545 microRNA 3545 acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:4946569 NCBI chr 6:136,704,947...136,705,061
Ensembl chr 6:136,704,947...136,705,061
JBrowse link
G Mir423 microRNA 423 involved_in ISO (MGI:5922106|PMID:28411267) RGD PMID:28411267 MGI:5922106 NCBI chr10:63,098,366...63,098,444
Ensembl chr10:63,098,360...63,098,453
JBrowse link
G Mir489 microRNA 489 acts_upstream_of_or_within ISO (MGI:5312165|PMID:22358842) RGD PMID:22358842 MGI:5312165 NCBI chr 4:28,659,523...28,659,628
Ensembl chr 4:28,659,523...28,659,628
JBrowse link
G Mir494 microRNA 494 acts_upstream_of_or_within ISO (MGI:5302482|PMID:20837890) RGD PMID:20837890 MGI:5302482 NCBI chr 6:133,864,370...133,864,452
Ensembl chr 6:133,864,369...133,864,453
JBrowse link
G Mir7-1 microRNA 7-1 acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:4946569 NCBI chr17:6,675,016...6,675,112
Ensembl chr17:6,675,016...6,675,112
JBrowse link
G Mir873 microRNA 873 acts_upstream_of_or_within ISO (MGI:6103206|PMID:28837808) RGD PMID:28837808 MGI:6103206 NCBI chr 5:52,481,076...52,481,152
Ensembl chr 5:52,481,076...52,481,152
JBrowse link
G Mir874 microRNA 874 acts_upstream_of_or_within ISO (MGI:5551666|PMID:24462679) RGD PMID:24462679 MGI:5551666 NCBI chr17:7,025,014...7,025,089
Ensembl chr17:7,025,014...7,025,089
JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within ISO (MGI:6108693|PMID:28819115) RGD PMID:28819115 MGI:6108693 NCBI chr 4:57,463,366...57,463,471
Ensembl chr 4:57,463,366...57,463,471
JBrowse link
G Mirlet7a1 microRNA let-7a-1 acts_upstream_of_or_within ISO MGI:3619049 (MGI:4438512|PMID:19898466), (MGI:5461254|PMID:23152446) RGD PMID:19898466 PMID:23152446 MGI:4438512 MGI:5461254 NCBI chr17:16,417,853...16,417,946
Ensembl chr17:16,417,855...16,417,954
JBrowse link
G Mirlet7b microRNA let-7b acts_upstream_of_or_within ISO (MGI:5461254|PMID:23152446) RGD PMID:23152446 MGI:5461254 NCBI chr 7:126,590,627...126,590,711
Ensembl chr 7:126,590,627...126,590,711
JBrowse link
G Mirlet7c1 microRNA let-7c-1 acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:3510301 NCBI chr11:16,052,873...16,052,966
Ensembl chr11:16,052,868...16,052,975
JBrowse link
G Mirlet7c2 microRNA let-7c-2 acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:3510301 NCBI chr 7:126,590,212...126,590,306
Ensembl chr 7:126,590,212...126,590,306
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:17507929) RGD PMID:17507929 NCBI chr 2:207,277,088...207,301,245
Ensembl chr 2:207,278,161...207,300,854
JBrowse link
G Tnrc6a trinucleotide repeat containing adaptor 6A involved_in ISO
IBA
(PMID:23172285)
PMID:21873635
RGD PMID:23172285, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:192,991,584...193,146,403
Ensembl chr 1:193,076,430...193,146,394
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:121,930,610...122,147,934
Ensembl chr 7:121,930,615...122,147,934
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C involved_in ISO
IBA
UniProtKB:Q8SY33 (PMID:23172285)
PMID:21873635
RGD PMID:23172285, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:106,698,359...106,763,639
Ensembl chr10:106,712,127...106,762,043
JBrowse link
G Wtip WT1 interacting protein involved_in ISO (PMID:20616046) RGD PMID:20616046 NCBI chr 1:89,966,496...89,999,892 JBrowse link
gene silencing by RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:5486537|PMID:19716330)
UniProt
RGD
PMID:19716330 GO_REF:0000024 MGI:5486537 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Asz1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:45,358,574...45,414,177
Ensembl chr 4:45,358,574...45,414,177
JBrowse link
G Cnot10 CCR4-NOT transcription complex, subunit 10 involved_in IEA GO_REF:0000043
GO_REF:0000104
UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 8:122,634,681...122,696,466
Ensembl chr 8:122,634,685...122,679,720
JBrowse link
G Cnot11 CCR4-NOT transcription complex, subunit 11 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:46,270,229...46,279,928
Ensembl chr 9:46,270,122...46,279,995
JBrowse link
G Cnot6 CCR4-NOT transcription complex, subunit 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:35,144,291...35,195,126
Ensembl chr10:35,146,337...35,187,416
JBrowse link
G Cnot6l CCR4-NOT transcription complex, subunit 6-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:15,059,101...15,148,255
Ensembl chr14:15,059,387...15,146,586
JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in ISO (MGI:5486537|PMID:19716330) RGD PMID:19716330 MGI:5486537 NCBI chr16:54,899,452...54,918,616
Ensembl chr16:54,899,452...54,918,613
JBrowse link
G Cnot9 CCR4-NOT transcription complex subunit 9 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:81,783,349...81,808,815
Ensembl chr 9:81,783,349...81,808,805
JBrowse link
G Ddx4 DEAD-box helicase 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:44,447,610...44,504,263
Ensembl chr 2:44,447,573...44,504,354
JBrowse link
G Eri1 exoribonuclease 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:60,307,148...60,327,237
Ensembl chr16:60,307,148...60,327,236
JBrowse link
G Exd1 exonuclease 3'-5' domain containing 1 involved_in ISO (MGI:5751619|PMID:26669262) RGD PMID:26669262 MGI:5751619 NCBI chr 3:111,326,388...111,354,419
Ensembl chr 3:111,326,480...111,354,419
JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 involved_in ISS
ISO
GO_REF:0000024
(MGI:5439219|PMID:22902560)
UniProt
RGD
PMID:22902560 GO_REF:0000024 MGI:5439219 NCBI chr12:24,365,941...24,438,088
Ensembl chr12:24,367,199...24,438,019
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in ISO (MGI:3813746|PMID:18694567) RGD PMID:18694567 MGI:3813746 NCBI chr13:84,412,569...84,452,140
Ensembl chr13:84,383,670...84,452,181
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:61,734,118...61,767,098
Ensembl chr 5:61,734,118...61,766,481
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:72,071,838...72,103,087
Ensembl chr11:72,921,282...72,929,003
JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5486537|PMID:19716330)
UniProt
RGD
PMID:19716330 GO_REF:0000024 MGI:5486537 NCBI chr 7:75,409,581...75,421,874
Ensembl chr 7:75,409,581...75,422,268
JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:31,608,641...31,629,961
Ensembl chr12:31,609,053...31,629,881
JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 involved_in ISO (MGI:3709799|PMID:17446352), (MGI:3778312|PMID:18381894), (MGI:3815367|PMID:18922463) RGD PMID:17446352 PMID:18381894 PMID:18922463 MGI:3709799 MGI:3778312 MGI:3815367 NCBI chr15:52,037,693...52,116,277
Ensembl chr15:52,037,693...52,116,001
JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3708051|PMID:17395546), (MGI:3778312|PMID:18381894), (MGI:3815367|PMID:18922463)
GO_REF:0000043
UniProt
RGD
PMID:17395546 PMID:18381894 PMID:18922463 GO_REF:0000024 GO_REF:0000043 MGI:3708051 MGI:3778312 MGI:3815367 NCBI chr 8:13,208,774...13,251,970
Ensembl chr 8:13,208,774...13,251,812
JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:55,772,377...56,171,669
Ensembl chr 4:55,772,377...56,171,668
JBrowse link
G Tdrd1 tudor domain containing 1 involved_in ISO (MGI:4356231|PMID:19465913) RGD PMID:19465913 MGI:4356231 NCBI chr 1:277,639,670...277,685,236
Ensembl chr 1:277,641,512...277,685,257
JBrowse link
G Tdrd12 tudor domain containing 12 involved_in ISO (MGI:5516419|PMID:24067652) RGD PMID:24067652 MGI:5516419 NCBI chr 1:91,739,126...91,811,577
Ensembl chr 1:91,740,933...91,811,547
JBrowse link
G Tdrd9 tudor domain containing 9 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:136,536,636...136,650,481
Ensembl chr 6:136,536,736...136,649,859
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in ISO (PMID:19716330) RGD PMID:19716330 NCBI chr 7:121,930,610...122,147,934
Ensembl chr 7:121,930,615...122,147,934
JBrowse link
heterochromatin maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO (MGI:5578697|PMID:24335282) RGD PMID:24335282 MGI:5578697 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO (PMID:19372552) RGD PMID:19372552 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of ISO (PMID:24769206) RGD PMID:24769206 NCBI chr 5:164,844,642...164,864,360
Ensembl chr 5:164,845,925...164,860,910
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO
IEA
(PMID:15469825)
GO_REF:0000107
RGD
Ensembl
PMID:15469825 GO_REF:0000107 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B acts_upstream_of_or_within ISO MGI:2183933 (MGI:3720437|PMID:17488778) RGD PMID:17488778 MGI:3720437 NCBI chr10:37,439,947...37,454,867
Ensembl chr10:37,441,284...37,455,022
JBrowse link
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 acts_upstream_of_or_within ISO (MGI:5317038|PMID:21266480) RGD PMID:21266480 MGI:5317038 NCBI chr15:24,021,674...24,056,073
Ensembl chr15:24,021,674...24,056,073
JBrowse link
heterochromatin organization involved in chromatin silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISO (MGI:5532809|PMID:23754746), (MGI:5803776|PMID:26391951) RGD PMID:23754746 PMID:26391951 MGI:5532809 MGI:5803776 NCBI chr 9:119,675,750...119,818,620
Ensembl chr 9:119,676,628...119,818,310
JBrowse link
miRNA loading onto RISC involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific involved_in ISO
IEA
(PMID:23622242)
GO_REF:0000107
RGD
Ensembl
PMID:23622242 GO_REF:0000107 NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
JBrowse link
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:18178619), (PMID:19966796)
Ensembl
RGD
PMID:18178619 PMID:19966796 GO_REF:0000107 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Dicer1 dicer 1 ribonuclease III involved_in ISO (PMID:18178619) RGD PMID:18178619 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISO (PMID:18178619) RGD PMID:18178619 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
miRNA mediated inhibition of translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:17671087), (PMID:18771919), (PMID:19801630)
GO_REF:0000104
UniProt
RGD
PMID:17671087 PMID:18771919 PMID:19801630 GO_REF:0000024 GO_REF:0000104 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in ISO
IEA
ISS
(PMID:17507929)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:17507929 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:151,356,867...151,363,201
Ensembl chr 3:151,356,868...151,363,115
JBrowse link
G Mir125a microRNA 125a acts_upstream_of_or_within ISO (MGI:5465045|PMID:22751012) RGD PMID:22751012 MGI:5465045 NCBI chr 1:59,704,827...59,704,911
Ensembl chr 1:59,704,827...59,704,911
JBrowse link
G Mir143 microRNA 143 acts_upstream_of_or_within ISO (MGI:5289772|PMID:21441927) RGD PMID:21441927 MGI:5289772 NCBI chr18:56,971,273...56,971,377
Ensembl chr18:56,971,273...56,971,377
JBrowse link
G Mir186 microRNA 186 acts_upstream_of_or_within ISO (MGI:6402838|PMID:32109384) RGD PMID:32109384 MGI:6402838 NCBI chr 2:263,873,759...263,873,844
Ensembl chr 2:263,873,759...263,873,844
JBrowse link
G Mirlet7b microRNA let-7b acts_upstream_of_or_within ISO (MGI:6402838|PMID:32109384) RGD PMID:32109384 MGI:6402838 NCBI chr 7:126,590,627...126,590,711
Ensembl chr 7:126,590,627...126,590,711
JBrowse link
G Mirlet7g microRNA let-7g acts_upstream_of_or_within ISO (MGI:6402838|PMID:32109384) RGD PMID:32109384 MGI:6402838 NCBI chr 8:114,874,457...114,874,544
Ensembl chr 8:114,874,454...114,874,550
JBrowse link
G Rbm4 RNA binding motif protein 4 involved_in ISO (PMID:19801630) RGD PMID:19801630 NCBI chr 1:220,038,403...220,049,756
Ensembl chr 1:220,039,734...220,048,966
JBrowse link
G Tnrc6a trinucleotide repeat containing adaptor 6A involved_in ISO (PMID:17671087) RGD PMID:17671087 NCBI chr 1:192,991,584...193,146,403
Ensembl chr 1:193,076,430...193,146,394
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:121,930,610...122,147,934
Ensembl chr 7:121,930,615...122,147,934
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:106,698,359...106,763,639
Ensembl chr10:106,712,127...106,762,043
JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISS
ISO
GO_REF:0000024
(MGI:5448492|PMID:22735451)
UniProt
RGD
PMID:22735451 GO_REF:0000024 MGI:5448492 NCBI chr 8:122,553,015...122,604,787
Ensembl chr 8:122,553,015...122,604,787
JBrowse link
G Zfp36 zinc finger protein 36 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5487524|PMID:21278420)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21278420 GO_REF:0000024 GO_REF:0000107 MGI:5487524 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
mRNA cleavage involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 NOT
NOT|involved_in
ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5616320|PMID:16357216)
GO_REF:0000104
(PMID:15260970), (PMID:17524464), (PMID:18771919)
UniProt
RGD
PMID:15260970 PMID:16357216 PMID:17524464 PMID:18771919 GO_REF:0000024 GO_REF:0000104 MGI:5616320 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 NOT
NOT|involved_in
ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 NOT
NOT|involved_in
ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Mir196a microRNA 196a acts_upstream_of_or_within ISO (MGI:3042528|PMID:15105502), (MGI:3510301|PMID:15361871) RGD PMID:15105502 PMID:15361871 MGI:3042528 MGI:3510301 NCBI chr 7:144,584,235...144,584,344
Ensembl chr 7:144,584,235...144,584,344
JBrowse link
G Mir196b microRNA 196b acts_upstream_of_or_within ISO (MGI:3042528|PMID:15105502) RGD PMID:15105502 MGI:3042528 NCBI chr 4:82,199,056...82,199,140
Ensembl chr 4:82,199,056...82,199,140
JBrowse link
G Mir196c microRNA 196c acts_upstream_of_or_within ISO (MGI:3042528|PMID:15105502), (MGI:3510301|PMID:15361871) RGD PMID:15105502 PMID:15361871 MGI:3042528 MGI:3510301 NCBI chr10:84,113,578...84,113,657
Ensembl chr10:84,113,578...84,113,657
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:16289642) RGD PMID:16289642 NCBI chr 2:207,277,088...207,301,245
Ensembl chr 2:207,278,161...207,300,854
JBrowse link
mRNA cleavage involved in gene silencing by siRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 NOT
NOT|involved_in
ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:15260970), (PMID:22795694)
Ensembl
RGD
PMID:15260970 PMID:22795694 GO_REF:0000107 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 NOT
NOT|involved_in
ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 NOT
NOT|involved_in
ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
negative regulation of chromatin silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atad2 ATPase family, AAA domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:97,984,754...98,027,379
Ensembl chr 7:97,984,862...98,026,052
JBrowse link
G Atad2b ATPase family, AAA domain containing 2B involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:28,998,080...29,066,850
Ensembl chr 6:29,012,007...29,163,134
JBrowse link
G H1f0 H1.0 linker histone involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:120,260,776...120,262,636 JBrowse link
G H1f1 H1.1 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:43,614,101...43,614,844
Ensembl chr17:43,614,101...43,614,844
JBrowse link
G H1f10 H1.10 linker histone involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:119,889,016...119,892,661
Ensembl chr 4:119,889,371...119,889,949
JBrowse link
G H1f2 H1.2 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:43,638,938...43,640,445
Ensembl chr17:43,639,749...43,640,387
JBrowse link
G H1f4 H1.4 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:43,734,461...43,735,120
Ensembl chr17:43,734,461...43,735,120
JBrowse link
G H1f5 H1.5 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:44,766,313...44,766,981
Ensembl chr17:44,766,313...44,766,981
JBrowse link
G H1f6 H1.6 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:43,675,190...43,675,934
Ensembl chr17:43,675,190...43,675,934
JBrowse link
G H1f8 H1.8 linker histone involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:147,844,658...147,849,779
Ensembl chr 4:147,844,658...147,849,779
JBrowse link
G H4f3 H1.3 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:43,797,711...43,798,450
Ensembl chr17:43,797,721...43,798,383
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:82,775,691...82,776,487
Ensembl chr10:82,775,691...82,776,487
JBrowse link
negative regulation of gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnd1 DND microRNA-mediated repression inhibitor 1 involved_in ISO
IBA
(PMID:18155131)
PMID:21873635
RGD PMID:18155131, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr18:29,608,588...29,611,212
Ensembl chr18:29,608,588...29,611,212
JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in ISS
ISO
GO_REF:0000024
RNAcentral:URS000024463E_9606 (PMID:26595526), (PMID:27089893)
UniProt
RGD
PMID:26595526 PMID:27089893 GO_REF:0000024 NCBI chr12:2,461,502...2,502,432
Ensembl chr12:2,461,502...2,502,432
JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19409607) RGD PMID:19409607 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma involved_in ISO (PMID:28522568) RGD PMID:28522568 NCBI chr 4:147,274,055...147,399,383
Ensembl chr 4:147,274,107...147,399,380
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO RNAcentral:URS000024463E_9606 (PMID:22269326) RGD PMID:22269326 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
negative regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcdin3d BCDIN3 domain containing RNA methyltransferase involved_in ISO
IBA
ISS
(PMID:23063121)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:23063121, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr 7:141,132,106...141,136,700
Ensembl chr 7:141,132,133...141,136,700
JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) RGD PMID:18951094 NCBI chr20:50,482,536...50,580,273
Ensembl chr20:50,486,809...50,564,987
JBrowse link
negative regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il6 interleukin 6 acts_upstream_of ISO UniProtKB:P40763 (PMID:31507089) RGD PMID:31507089 NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) RGD PMID:18951094 NCBI chr20:50,482,536...50,580,273
Ensembl chr20:50,486,809...50,564,987
JBrowse link
G Mecp2 methyl CpG binding protein 2 IMP RGD PMID:24636259 RGD:12789709 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO (PMID:31507089) RGD PMID:31507089 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
negative regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Esr1 estrogen receptor 1 involved_in ISO
IEA
(PMID:20388878)
GO_REF:0000107
RGD
Ensembl
PMID:20388878 GO_REF:0000107 NCBI chr 1:41,192,029...41,594,799
Ensembl chr 1:41,192,824...41,594,796
JBrowse link
G Ncor1 nuclear receptor co-repressor 1 involved_in ISO
IEA
(PMID:20388878)
GO_REF:0000107
RGD
Ensembl
PMID:20388878 GO_REF:0000107 NCBI chr10:48,629,121...48,772,890
Ensembl chr10:48,629,121...48,772,890
JBrowse link
G Ncor2 nuclear receptor co-repressor 2 involved_in ISO (PMID:20388878) RGD PMID:20388878 NCBI chr12:36,871,917...37,033,701
Ensembl chr12:36,871,999...37,033,701
JBrowse link
G Ppp3ca protein phosphatase 3 catalytic subunit alpha involved_in ISO (MGI:5562625|PMID:24161931) RGD PMID:24161931 MGI:5562625 NCBI chr 2:241,909,332...242,186,861
Ensembl chr 2:241,909,832...242,184,854
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO RNAcentral:URS000024463E_9606 (PMID:22269326) RGD PMID:22269326 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tnf tumor necrosis factor acts_upstream_of_or_within ISO (PMID:31124343), (PMID:31824476) RGD PMID:31124343 PMID:31824476 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO MGI:1890508 (MGI:5013521|PMID:21522133) RGD PMID:21522133 MGI:5013521 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Zc3h10 zinc finger CCCH type containing 10 involved_in ISO (PMID:28431233) RGD PMID:28431233 NCBI chr 7:2,968,428...2,972,521
Ensembl chr 7:2,968,435...2,972,521
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISO
ISS
(PMID:22055188)
GO_REF:0000024
RGD
UniProt
PMID:22055188 GO_REF:0000024 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033|MGI:98834 (MGI:5013521|PMID:21522133) RGD PMID:21522133 MGI:5013521 NCBI chr 5:139,982,404...140,015,541
Ensembl chr 5:139,983,680...140,015,541
JBrowse link
negative regulation of production of siRNA involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tert telomerase reverse transcriptase involved_in ISO (PMID:19701182) RGD PMID:19701182 NCBI chr 1:32,250,876...32,275,330
Ensembl chr 1:32,251,714...32,272,476
JBrowse link
negative regulation of RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific acts_upstream_of_or_within
involved_in
IEA
ISO
GO_REF:0000107
(MGI:3573853|PMID:15556947)
Ensembl
RGD
PMID:15556947 GO_REF:0000107 MGI:3573853 NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
JBrowse link
positive regulation of chromatin silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mier1 MIER1 transcriptional regulator involved_in ISO (PMID:12482978) RGD PMID:12482978 NCBI chr 5:122,642,065...122,693,642
Ensembl chr 5:122,641,885...122,693,635
JBrowse link
G Sin3a SIN3 transcription regulator family member A involved_in ISO (PMID:22783022) RGD PMID:22783022 NCBI chr 8:61,748,590...61,803,314
Ensembl chr 8:61,762,768...61,803,099
JBrowse link
positive regulation of chromatin silencing at telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt6 sirtuin 6 involved_in ISO (PMID:21847107) RGD PMID:21847107 NCBI chr 7:10,937,622...10,943,048
Ensembl chr 7:10,937,599...10,943,063
JBrowse link
positive regulation of gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002945.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 1:89,967,031...90,000,386 JBrowse link
G Ajuba ajuba LIM protein involved_in ISO
IBA
ISS
(PMID:20616046)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20616046, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr15:33,208,210...33,218,456
Ensembl chr15:33,208,216...33,218,456
JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:17531811) RGD PMID:17531811 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:4868681|PMID:20159450)
GO_REF:0000024
(PMID:17057366)
Ensembl
RGD
UniProt
PMID:17057366 PMID:20159450 GO_REF:0000024 GO_REF:0000107 MGI:4868681 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISO
IEA
ISS
(PMID:17057366)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:17057366 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:120,529,716...120,570,356
Ensembl chr 2:120,512,899...120,570,355
JBrowse link
G Limd1 LIM domain containing 1 involved_in ISO
IBA
ISS
(PMID:20616046)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20616046, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr 8:132,553,218...132,598,826
Ensembl chr 8:132,553,218...132,598,812
JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 involved_in IMP PMID:24676391 BHF-UCL PMID:24676391, PMID:24676391 RGD:10400879, RGD:10400879 NCBI chr 2:240,773,520...240,890,053
Ensembl chr 2:240,773,456...240,866,689
JBrowse link
G Pum1 pumilio RNA-binding family member 1 involved_in ISO (PMID:20818387), (PMID:22345517) RGD PMID:20818387 PMID:22345517 NCBI chr 5:148,781,239...148,911,776
Ensembl chr 5:148,781,222...148,911,803
JBrowse link
G Pum2 pumilio RNA-binding family member 2 involved_in ISO (PMID:22345517) RGD PMID:22345517 NCBI chr 6:33,786,184...33,865,693
Ensembl chr 6:33,786,197...33,865,687
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO (PMID:23820254) RGD PMID:23820254 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
G Trim71 tripartite motif containing 71 acts_upstream_of_or_within ISO (MGI:4438512|PMID:19898466) RGD PMID:19898466 MGI:4438512 NCBI chr 8:122,553,015...122,604,787
Ensembl chr 8:122,553,015...122,604,787
JBrowse link
G Wtip WT1 interacting protein involved_in ISO (PMID:20616046) RGD PMID:20616046 NCBI chr 1:89,966,496...89,999,892 JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO
ISS
(PMID:15766526)
GO_REF:0000024
RGD
UniProt
PMID:15766526 GO_REF:0000024 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
positive regulation of miRNA mediated inhibition of translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:23409027)
Ensembl
RGD
PMID:23409027 GO_REF:0000107 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ddx6 DEAD-box helicase 6 involved_in ISO
IEA
(PMID:27342281)
GO_REF:0000107
RGD
Ensembl
PMID:27342281 GO_REF:0000107 NCBI chr 8:48,924,768...48,961,394
Ensembl chr 8:48,925,604...48,958,026
JBrowse link
G Eif4e2 eukaryotic translation initiation factor 4E family member 2 involved_in ISO
IEA
(PMID:28487484)
GO_REF:0000107
RGD
Ensembl
PMID:28487484 GO_REF:0000107 NCBI chr 9:94,310,476...94,325,445
Ensembl chr 9:94,307,852...94,336,831
JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO
IEA
(PMID:24335285), (PMID:27342281), (PMID:28487484), (PMID:32354837)
GO_REF:0000107
RGD
Ensembl
PMID:24335285 PMID:27342281 PMID:28487484 PMID:32354837 GO_REF:0000107 NCBI chr14:83,412,843...83,455,694
Ensembl chr14:83,412,968...83,455,456
JBrowse link
G Eif4g1 eukaryotic translation initiation factor 4 gamma, 1 involved_in ISO (PMID:23409027) RGD PMID:23409027 NCBI chr11:83,907,659...83,927,683
Ensembl chr11:83,908,109...83,926,524
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO (PMID:23820254) RGD PMID:23820254 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in ISO
IEA
(PMID:32354837)
GO_REF:0000107
RGD
Ensembl
PMID:32354837 GO_REF:0000107 NCBI chr 7:121,930,610...122,147,934
Ensembl chr 7:121,930,615...122,147,934
JBrowse link
positive regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
GO_REF:0000107
(PMID:18548003)
Ensembl
RGD
PMID:18548003 GO_REF:0000107 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in ISO (PMID:18548003) RGD PMID:18548003 NCBI chr10:94,979,759...94,988,461
Ensembl chr10:94,980,928...94,988,461
JBrowse link
G Egfr epidermal growth factor receptor involved_in ISO (PMID:21673316) RGD PMID:21673316 NCBI chr14:99,919,485...100,104,136
Ensembl chr14:99,919,485...100,098,796
JBrowse link
G Il6 interleukin 6 acts_upstream_of_or_within ISO (PMID:27252421) RGD PMID:27252421 NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
JBrowse link
G Lin28a lin-28 homolog A involved_in ISO (MGI:5294254|PMID:21962509) RGD PMID:21962509 MGI:5294254 NCBI chr 5:152,230,343...152,247,873
Ensembl chr 5:152,230,343...152,247,332
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 involved_in ISO
IEA
(PMID:24375836)
GO_REF:0000107
RGD
Ensembl
PMID:24375836 GO_REF:0000107 NCBI chr 8:69,134,218...69,722,573
Ensembl chr 8:69,134,223...69,164,758
JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 involved_in ISO (PMID:24375836) RGD PMID:24375836 NCBI chr 7:11,458,971...11,478,520
Ensembl chr 7:11,458,967...11,478,489
JBrowse link
G Myocd myocardin involved_in IEA
ISO
GO_REF:0000107
(MGI:6414695|PMID:28342807)
Ensembl
RGD
PMID:28342807 GO_REF:0000107 MGI:6414695 NCBI chr10:51,682,053...51,781,458
Ensembl chr10:51,683,540...51,778,986
JBrowse link
G Nr2f1 nuclear receptor subfamily 2, group F, member 1 acts_upstream_of_or_within ISO MGI:2385930 (MGI:5574156|PMID:24349493) RGD PMID:24349493 MGI:5574156 NCBI chr 2:5,569,954...5,579,894
Ensembl chr 2:5,569,935...5,579,894
JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 involved_in ISO (PMID:26020802) RGD PMID:26020802 NCBI chr17:31,537,580...31,569,904
Ensembl chr17:31,537,591...31,569,904
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO (PMID:18548003) RGD PMID:18548003 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:22578566), (PMID:26100857) RGD PMID:22578566 PMID:26100857 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
positive regulation of RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpo5 exportin 5 involved_in ISO (PMID:15613540) RGD PMID:15613540 NCBI chr 9:17,125,201...17,163,170
Ensembl chr 9:17,125,201...17,163,170
JBrowse link
post-transcriptional gene silencing by RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Helz helicase with zinc finger involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:95,767,754...95,911,025
Ensembl chr10:95,770,154...95,906,927
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:207,277,088...207,301,245
Ensembl chr 2:207,278,161...207,300,854
JBrowse link
G Mov10l1 Mov10 like RISC complex RNA helicase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:129,973,391...130,039,306
Ensembl chr 7:129,973,480...130,037,344
JBrowse link
posttranscriptional gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07034923.1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr12:491,007...499,601 JBrowse link
G Celf1 CUGBP, Elav-like family member 1 involved_in ISO
IMP
(PMID:30508596) RGD PMID:30508596, PMID:30508596, PMID:30508596 RGD:38501076, RGD:38501076 NCBI chr 3:79,768,900...79,844,548
Ensembl chr 3:79,823,945...79,842,082
JBrowse link
G Celf2 CUGBP, Elav-like family member 2 involved_in IMP PMID:30508596 ARUK-UCL PMID:30508596, PMID:30508596 RGD:38501076, RGD:38501076 NCBI chr17:75,259,269...75,660,154
Ensembl chr17:75,352,389...75,654,951
JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:6479802|PMID:28350193)
Ensembl
RGD
PMID:28350193 GO_REF:0000107 MGI:6479802 NCBI chr12:2,461,502...2,502,432
Ensembl chr12:2,461,502...2,502,432
JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 involved_in ISO (PMID:27157137) RGD PMID:27157137 NCBI chr 9:94,425,191...94,550,431
Ensembl chr 9:94,425,252...94,550,431
JBrowse link
G LOC103689943 meiosis arrest female protein 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:28,267...72,912
Ensembl chr10:28,243...72,912
JBrowse link
G Marf1 meiosis regulator and mRNA stability factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:908,806...953,481
Ensembl chr10:908,806...953,474
JBrowse link
G Mir33 microRNA 33 acts_upstream_of_or_within ISO (MGI:4456895|PMID:20466882) RGD PMID:20466882 MGI:4456895 NCBI chr 7:123,431,612...123,431,680
Ensembl chr 7:123,431,612...123,431,680
JBrowse link
G Mir34c microRNA 34c acts_upstream_of_or_within ISO (MGI:4439432|PMID:20212154) RGD PMID:20212154 MGI:4439432 NCBI chr 8:55,492,024...55,492,100
Ensembl chr 8:55,492,024...55,492,100
JBrowse link
G Pum1 pumilio RNA-binding family member 1 involved_in ISO (MGI:5315177|PMID:22342750), (MGI:5640939|PMID:24412312) RGD PMID:22342750 PMID:24412312 MGI:5315177 MGI:5640939 NCBI chr 5:148,781,239...148,911,776
Ensembl chr 5:148,781,222...148,911,803
JBrowse link
G Zar1 zygote arrest 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:37,757,579...37,764,389
Ensembl chr14:37,759,776...37,763,712
JBrowse link
pre-miRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpo5 exportin 5 involved_in ISO (PMID:14681208), (PMID:15613540) RGD PMID:14681208 PMID:15613540 NCBI chr 9:17,125,201...17,163,170
Ensembl chr 9:17,125,201...17,163,170
JBrowse link
pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific involved_in ISO
IEA
(PMID:23622242)
GO_REF:0000107
RGD
Ensembl
PMID:23622242 GO_REF:0000107 NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
JBrowse link
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5616320|PMID:16357216)
GO_REF:0000104
(PMID:16424907), (PMID:17671087), (PMID:18178619), (PMID:19966796)
UniProt
RGD
PMID:16357216 PMID:16424907 PMID:17671087 PMID:18178619 PMID:19966796 GO_REF:0000024 GO_REF:0000104 MGI:5616320 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:15973356), (PMID:16357216), (PMID:18178619), (PMID:23661684), (PMID:25549615)
(MGI:4359358|PMID:18604195)
PMID:21873635
RGD PMID:15973356 PMID:16357216 PMID:18178619 PMID:18604195 PMID:23661684 PMID:25549615, PMID:21873635, PMID:21873635 MGI:4359358, RGD:13792537, RGD:13792537 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Drosha drosha ribonuclease III acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:4359358|PMID:18604195)
PMID:21873635
RGD PMID:18604195, PMID:21873635, PMID:21873635 MGI:4359358, RGD:13792537, RGD:13792537 NCBI chr 2:62,887,267...63,000,307
Ensembl chr 2:62,887,267...62,999,572
JBrowse link
G Lin28a lin-28 homolog A involved_in
acts_upstream_of_or_within
ISO (PMID:18951094), (PMID:19703396)
(MGI:4359358|PMID:18604195), (MGI:4359360|PMID:18292307)
RGD PMID:18292307 PMID:18604195 PMID:18951094 PMID:19703396 MGI:4359358 MGI:4359360 NCBI chr 5:152,230,343...152,247,873
Ensembl chr 5:152,230,343...152,247,332
JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:19703396) RGD PMID:19703396 NCBI chr20:50,482,536...50,580,273
Ensembl chr20:50,486,809...50,564,987
JBrowse link
G Mrpl44 mitochondrial ribosomal protein L44 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 9:85,542,763...85,547,814
Ensembl chr 9:85,542,702...85,548,144
JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 involved_in IEA
ISO
GO_REF:0000107
(PMID:16424907), (PMID:23661684)
Ensembl
RGD
PMID:16424907 PMID:23661684 GO_REF:0000107 NCBI chr 3:63,489,081...63,507,918
Ensembl chr 3:63,489,074...63,507,926
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISS
ISO
GO_REF:0000024
(PMID:15973356), (PMID:16357216), (PMID:16424907), (PMID:18178619), (PMID:23661684)
UniProt
RGD
PMID:15973356 PMID:16357216 PMID:16424907 PMID:18178619 PMID:23661684 GO_REF:0000024 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO
IBA
(PMID:19703396), (PMID:25979828)
PMID:21873635
RGD PMID:19703396 PMID:25979828, PMID:21873635 RGD:13792537 NCBI chr 5:128,063,880...128,168,726
Ensembl chr 5:128,083,118...128,168,207
JBrowse link
G Tut7 terminal uridylyl transferase 7 involved_in ISO
IBA
(PMID:25979828)
PMID:21873635
RGD PMID:25979828, PMID:21873635 RGD:13792537 NCBI chr17:5,225,854...5,279,674
Ensembl chr17:5,225,835...5,271,794
JBrowse link
primary miRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl3 methyltransferase-like 3 involved_in ISO
IBA
(PMID:25799998)
PMID:21873635
RGD PMID:25799998, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr15:28,710,299...28,721,491
Ensembl chr15:28,710,300...28,721,127
JBrowse link
primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07035787.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr12:22,466,601...22,470,972 JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked acts_upstream_of_or_within_negative_effect ISO
IEA
(MGI:6108693|PMID:28819115)
GO_REF:0000107
RGD
Ensembl
PMID:28819115 GO_REF:0000107 MGI:6108693 NCBI chr  X:10,400,363...10,414,010
Ensembl chr  X:10,400,366...10,413,995
JBrowse link
G Dgcr8 DGCR8 microprocessor complex subunit involved_in ISO
IBA
(PMID:15531877), (PMID:15574589), (PMID:24449907), (PMID:24910438)
PMID:21873635
RGD PMID:15531877 PMID:15574589 PMID:24449907 PMID:24910438, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr11:86,852,682...86,885,233
Ensembl chr11:86,852,711...86,885,224
JBrowse link
G Drosha drosha ribonuclease III involved_in ISO
IBA
(PMID:14508493), (PMID:15574589)
PMID:21873635
RGD PMID:14508493 PMID:15574589, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:62,887,267...63,000,307
Ensembl chr 2:62,887,267...62,999,572
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO
ISS
IEA
(PMID:26321680)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:26321680 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:81,237,496...81,241,281
Ensembl chr 4:81,237,496...81,241,282
JBrowse link
G Mettl3 methyltransferase-like 3 involved_in ISO (PMID:25799998) RGD PMID:25799998 NCBI chr15:28,710,299...28,721,491
Ensembl chr15:28,710,300...28,721,127
JBrowse link
G Mrpl44 mitochondrial ribosomal protein L44 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 9:85,542,763...85,547,814
Ensembl chr 9:85,542,702...85,548,144
JBrowse link
G Pus10 pseudouridine synthase 10 involved_in ISO (PMID:31819270) RGD PMID:31819270 NCBI chr14:108,411,941...108,479,696
Ensembl chr14:108,412,152...108,479,781
JBrowse link
G Srrt serrate, RNA effector molecule involved_in ISO (PMID:19632182)
(MGI:4359572|PMID:19632182)
RGD PMID:19632182 MGI:4359572 NCBI chr12:22,457,898...22,471,090 JBrowse link
production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific acts_upstream_of_or_within ISO MGI:3032487 (MGI:5495061|PMID:23622242) RGD PMID:23622242 MGI:5495061 NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
JBrowse link
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:22795694) RGD PMID:22795694 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 acts_upstream_of_or_within
involved_in
ISO (PMID:19966796), (PMID:23661684)
MGI:3056454 (MGI:4462112|PMID:20424607)
RGD PMID:19966796 PMID:20424607 PMID:23661684 MGI:4462112 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:22795694) RGD PMID:22795694 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:22795694) RGD PMID:22795694 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within
involved_in
ISO (PMID:15973356), (PMID:23322395), (PMID:23661684), (PMID:26435691)
MGI:1926500|MGI:3589209|MGI:3589287|MGI:3622169 (MGI:3528782|PMID:15713842), (MGI:3588609|PMID:16040801), (MGI:3619610|PMID:16462742)
(MGI:4454581|PMID:20463238), (MGI:4830414|PMID:20805985), (MGI:5527004|PMID:24209619)
MGI:1926500|MGI:3589209|MGI:3589287|MGI:3622169 (MGI:3528782|PMID:15713842), (MGI:3588609|PMID:16040801), (MGI:3619610|PMID:16462742), (MGI:4454581|PMID:20463238), (MGI:4830414|PMID:20805985), (MGI:5527004|PMID:24209619)
RGD PMID:15713842 PMID:15973356 PMID:16040801 PMID:16462742 PMID:20463238 PMID:20805985 PMID:23322395 PMID:23661684 PMID:24209619 PMID:26435691 MGI:3528782 MGI:3588609 MGI:3619610 MGI:4454581 MGI:4830414 MGI:5527004 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G NEWGENE_1359268 Smad nuclear interacting protein 1 involved_in ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr 5:143,063,206...143,070,899
Ensembl chr 5:143,063,099...143,070,884
JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 involved_in ISO (PMID:23661684) RGD PMID:23661684 NCBI chr 3:63,489,081...63,507,918
Ensembl chr 3:63,489,074...63,507,926
JBrowse link
G Pum1 pumilio RNA-binding family member 1 involved_in ISO
IBA
(PMID:28431233)
PMID:21873635
RGD PMID:28431233, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:148,781,239...148,911,776
Ensembl chr 5:148,781,222...148,911,803
JBrowse link
G Pum2 pumilio RNA-binding family member 2 involved_in ISO
IBA
(PMID:28431233)
PMID:21873635
RGD PMID:28431233, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:33,786,184...33,865,693
Ensembl chr 6:33,786,197...33,865,687
JBrowse link
G Rbm3 RNA binding motif protein 3 acts_upstream_of_or_within ISO (MGI:3530692|PMID:15684048) RGD PMID:15684048 MGI:3530692 NCBI chr  X:15,098,880...15,102,344
Ensembl chr  X:15,098,904...15,102,340
JBrowse link
G Snip1 Smad nuclear interacting protein 1 involved_in ISO
ISS
IBA
(PMID:18632581)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:18632581, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr15:19,275,273...19,282,753
Ensembl chr 5:143,063,099...143,070,884
JBrowse link
G Spout1 SPOUT domain containing methyltransferase 1 involved_in ISO
IBA
(PMID:28431233)
PMID:21873635
RGD PMID:28431233, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:8,743,890...8,751,634
Ensembl chr 3:8,743,882...8,751,324
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISO (PMID:15973356), (PMID:23661684) RGD PMID:15973356 PMID:23661684 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISO
ISS
(PMID:28431233)
GO_REF:0000024
RGD
UniProt
PMID:28431233 GO_REF:0000024 NCBI chr 8:122,553,015...122,604,787
Ensembl chr 8:122,553,015...122,604,787
JBrowse link
G Zc3h7a zinc finger CCCH type containing 7 A involved_in ISO
IBA
(PMID:28431233)
PMID:21873635
RGD PMID:28431233, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:4,535,651...4,575,643
Ensembl chr10:4,536,180...4,575,646
JBrowse link
G Zc3h7b zinc finger CCCH-type containing 7B involved_in ISO
IBA
(PMID:28431233)
PMID:21873635
RGD PMID:28431233, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:122,978,999...123,027,166
Ensembl chr 7:122,979,021...123,027,150
JBrowse link
production of siRNA involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07012856.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 2:211,740,637...211,753,297 JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:15973356), (PMID:17452327), (PMID:23661684)
(MGI:2679763|PMID:14528307)
(MGI:5527004|PMID:24209619)
PMID:21873635
(MGI:2679763|PMID:14528307), (MGI:5527004|PMID:24209619)
RGD PMID:14528307 PMID:15973356 PMID:17452327 PMID:23661684 PMID:24209619, PMID:21873635, PMID:21873635 MGI:2679763 MGI:5527004, RGD:13792537, RGD:13792537 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Drosha drosha ribonuclease III involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:62,887,267...63,000,307
Ensembl chr 2:62,887,267...62,999,572
JBrowse link
G Henmt1 HEN methyltransferase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:211,740,571...211,753,718 JBrowse link
G Mrpl44 mitochondrial ribosomal protein L44 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 9:85,542,763...85,547,814
Ensembl chr 9:85,542,702...85,548,144
JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:17452327)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:17452327 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:63,489,081...63,507,918
Ensembl chr 3:63,489,074...63,507,926
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISS
ISO
GO_REF:0000024
(PMID:15973356), (PMID:17452327)
UniProt
RGD
PMID:15973356 PMID:17452327 GO_REF:0000024 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
G Tert telomerase reverse transcriptase involved_in ISO (PMID:19701182) RGD PMID:19701182 NCBI chr 1:32,250,876...32,275,330
Ensembl chr 1:32,251,714...32,272,476
JBrowse link
regulation of chromatin silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hira histone cell cycle regulator IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:86,168,196...86,276,430
Ensembl chr11:86,168,196...86,276,430
JBrowse link
G LOC100911837 protein HIRA-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:85,802,536...85,896,680
Ensembl chr11:85,802,605...85,895,613
JBrowse link
G Uty ubiquitously transcribed tetratricopeptide repeat containing, Y-linked acts_upstream_of_or_within ISO (MGI:5305502|PMID:22192413) RGD PMID:22192413 MGI:5305502 NCBI chr  Y:1,065,274...1,206,127
Ensembl chr  Y:989,240...1,206,096
JBrowse link
regulation of chromatin silencing at telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc45 cell division cycle 45 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr11:86,328,785...86,354,099
Ensembl chr11:86,329,012...86,358,453
JBrowse link
regulation of gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 involved_in ISO (PMID:20935635) RGD PMID:20935635 NCBI chr 7:3,124,953...3,132,533
Ensembl chr 7:3,124,954...3,132,457
JBrowse link
G H3c1 H3 clustered histone 1 involved_in ISO (PMID:16267050) RGD PMID:16267050 NCBI chr17:43,616,206...43,616,735
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 involved_in ISO (PMID:16267050) RGD PMID:16267050 NCBI chr17:43,814,773...43,815,183
Ensembl chr17:43,814,773...43,815,183
Ensembl chr17:43,814,773...43,815,183
JBrowse link
G Hist1h3b histone cluster 1, H3b involved_in ISO (PMID:16267050) RGD PMID:16267050 NCBI chr17:44,760,023...44,764,058
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
JBrowse link
G LOC684819 similar to H3 histone, family 2 isoform 2 involved_in ISO (PMID:16267050) RGD PMID:16267050 NCBI chr17:43,794,397...43,795,493 JBrowse link
regulation of gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmr1 FMRP translational regulator 1 involved_in ISO
ISS
(PMID:25464849)
GO_REF:0000024
RGD
UniProt
PMID:25464849 GO_REF:0000024 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Lin28a lin-28 homolog A acts_upstream_of_or_within ISO MGI:2685973 (MGI:4438512|PMID:19898466) RGD PMID:19898466 MGI:4438512 NCBI chr 5:152,230,343...152,247,873
Ensembl chr 5:152,230,343...152,247,332
JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:84,412,569...84,452,140
Ensembl chr13:84,383,670...84,452,181
JBrowse link
G Mir154 microRNA 154 acts_upstream_of_or_within ISO (MGI:5705446|PMID:25959411) RGD PMID:25959411 MGI:5705446 NCBI chr 6:133,888,586...133,888,669
Ensembl chr 6:133,888,586...133,888,669
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO MGI:4124681 (MGI:5315650|PMID:22187428) RGD PMID:22187428 MGI:5315650 NCBI chr10:106,698,359...106,763,639
Ensembl chr10:106,712,127...106,762,043
JBrowse link
G Trim71 tripartite motif containing 71 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:5448492|PMID:22735451)
MGI:1890546 (MGI:4438512|PMID:19898466)
MGI:1890546 (MGI:4438512|PMID:19898466), (MGI:5448492|PMID:22735451)
UniProt
RGD
PMID:19898466 PMID:22735451 GO_REF:0000024 MGI:4438512 MGI:5448492 NCBI chr 8:122,553,015...122,604,787
Ensembl chr 8:122,553,015...122,604,787
JBrowse link
regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tarbp2 TARBP2 subunit of RISC loading complex acts_upstream_of_or_within ISO MGI:2135565|MGI:5645258 (MGI:6094668|PMID:27159388) RGD PMID:27159388 MGI:6094668 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
regulation of production of siRNA involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589287 (MGI:3528782|PMID:15713842) RGD PMID:15713842 MGI:3528782 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Nrde2 NRDE-2, necessary for RNA interference, domain containing involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:124,136,949...124,177,426
Ensembl chr 6:124,142,395...124,177,404
JBrowse link
siRNA loading onto RISC involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in ISO
IEA
(PMID:19966796)
GO_REF:0000107
RGD
Ensembl
PMID:19966796 GO_REF:0000107 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in ISO
ISS
(PMID:17495927)
GO_REF:0000024
RGD
UniProt
PMID:17495927 GO_REF:0000024 NCBI chr 3:72,125,269...72,137,122
Ensembl chr 3:72,125,273...72,128,973
JBrowse link
G Dicer1 dicer 1 ribonuclease III involved_in ISO (PMID:15973356) RGD PMID:15973356 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISO (PMID:15973356) RGD PMID:15973356 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
small RNA loading onto RISC term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:17531811) RGD PMID:17531811 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
targeting of mRNA for destruction involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in ISO
ISS
(PMID:17495927)
GO_REF:0000024
RGD
UniProt
PMID:17495927 GO_REF:0000024 NCBI chr 3:72,125,269...72,137,122
Ensembl chr 3:72,125,273...72,128,973
JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:17531811) RGD PMID:17531811 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Dicer1 dicer 1 ribonuclease III involved_in ISO (PMID:15973356), (PMID:17452327) RGD PMID:15973356 PMID:17452327 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISO
ISS
(PMID:15973356)
GO_REF:0000024
RGD
UniProt
PMID:15973356 GO_REF:0000024 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20082
    cellular process 18900
      gene silencing 255
        chromatin silencing + 84
        gene silencing by RNA + 152
        mRNA cleavage involved in gene silencing + 8
        negative regulation of gene silencing + 33
        posttranscriptional gene silencing + 140
        regulation of gene silencing + 77
Path 2
Term Annotations click to browse term
  biological_process 20082
    biological regulation 13906
      regulation of biological process 13141
        regulation of metabolic process 6948
          negative regulation of metabolic process 3271
            negative regulation of macromolecule metabolic process 3004
              negative regulation of gene expression 1130
                gene silencing 255
                  chromatin silencing + 84
                  gene silencing by RNA + 152
                  mRNA cleavage involved in gene silencing + 8
                  negative regulation of gene silencing + 33
                  posttranscriptional gene silencing + 140
                  regulation of gene silencing + 77
paths to the root