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ONTOLOGY REPORT - ANNOTATIONS


Term:selenocysteine metabolic process
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Accession:GO:0016259 term browser browse the term
Definition:The chemical reactions and pathways involving selenocysteine, an essential component of glutathione peroxidase and some other proteins.
Synonyms:exact_synonym: selenocysteine metabolism


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selenocysteine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Txnrd1 thioredoxin reductase 1 IMP RGD PMID:10512699 RGD:634379 NCBI chr 7:26,946,124...26,984,400
Ensembl chr 7:26,946,125...26,984,400
JBrowse link
selenocysteine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sephs1 selenophosphate synthetase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:77,312,562...77,340,934
Ensembl chr17:77,312,562...77,340,934
JBrowse link
G Sephs2 selenophosphate synthetase 2 ISO (MGI:3711593|PMID:17346238) RGD PMID:17346238 MGI:3711593 NCBI chr 1:198,719,158...198,721,476
Ensembl chr 1:198,719,162...198,721,476
JBrowse link
selenocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scly selenocysteine lyase IMP PMID:20164179 CAFA PMID:20164179 RGD:12793035 NCBI chr 9:98,438,408...98,459,075
Ensembl chr 9:98,438,439...98,459,080
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      primary metabolic process 10900
        cellular amino acid metabolic process 268
          alpha-amino acid metabolic process 190
            serine family amino acid metabolic process 40
              selenocysteine metabolic process 4
                negative regulation of selenocysteine metabolic process 0
                positive regulation of selenocysteine metabolic process 0
                regulation of selenocysteine metabolic process + 0
                selenocysteine biosynthetic process 2
                selenocysteine catabolic process 1
Path 2
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      cellular metabolic process 11073
        organic acid metabolic process 1008
          oxoacid metabolic process 970
            carboxylic acid metabolic process 951
              cellular amino acid metabolic process 268
                alpha-amino acid metabolic process 190
                  serine family amino acid metabolic process 40
                    selenocysteine metabolic process 4
                      negative regulation of selenocysteine metabolic process 0
                      positive regulation of selenocysteine metabolic process 0
                      regulation of selenocysteine metabolic process + 0
                      selenocysteine biosynthetic process 2
                      selenocysteine catabolic process 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.