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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of macroautophagy
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Accession:GO:0016239 term browser browse the term
Definition:Any process, such as recognition of nutrient depletion, that activates or increases the rate of macroautophagy to bring cytosolic macromolecules to the vacuole/lysosome for degradation.
Synonyms:exact_synonym: positive regulation of starvation-induced autophagy;   up regulation of macroautophagy;   upregulation of macroautophagy
 narrow_synonym: activation of macroautophagy;   stimulation of macroautophagy



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positive regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BNIP3 BCL2 interacting protein 3 acts_upstream_of_or_within IGI (PMID:19273585) MGI PMID:19273585 NCBI chr10:131,967,684...131,981,923
Ensembl chr10:131,967,684...131,981,967
JBrowse link
G BNIP3L BCL2 interacting protein 3 like acts_upstream_of_or_within IGI (PMID:19273585) MGI PMID:19273585 NCBI chr 8:26,383,054...26,413,127
Ensembl chr 8:26,383,054...26,505,636
JBrowse link
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IGI
IMP
(PMID:27103069)
(PMID:27103069), (PMID:27334615)
HGNC PMID:27103069 PMID:27334615 NCBI chr 9:27,546,546...27,573,866
Ensembl chr 9:27,535,640...27,573,866
JBrowse link
G DCN decorin acts_upstream_of_or_within IDA
IGI
(PMID:23798385) MGI PMID:23798385 NCBI chr12:91,140,484...91,182,817
Ensembl chr12:91,140,484...91,183,217
JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin acts_upstream_of_or_within
involved_in
IMP
IEA
(PMID:20453062) MGI
Ensembl
PMID:20453062 GO_REF:0000107 NCBI chr 6:145,383,353...145,736,023
Ensembl chr 6:145,382,535...145,736,023
JBrowse link
G GNAI3 G protein subunit alpha i3 involved_in IMP (PMID:12642577) UniProt PMID:12642577 NCBI chr 1:109,548,615...109,600,195
Ensembl chr 1:109,548,615...109,600,195
JBrowse link
G GPSM1 G protein signaling modulator 1 involved_in IDA (PMID:12642577) UniProt PMID:12642577 NCBI chr 9:136,327,539...136,359,601
Ensembl chr 9:136,327,476...136,359,605
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19273585) Ensembl
MGI
PMID:19273585 GO_REF:0000107 NCBI chr14:61,695,513...61,748,258
Ensembl chr14:61,695,513...61,748,259
JBrowse link
G HMOX1 heme oxygenase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20705711) Ensembl
MGI
PMID:20705711 GO_REF:0000107 NCBI chr22:35,381,096...35,394,207
Ensembl chr22:35,380,361...35,394,214
JBrowse link
G IKBKG inhibitor of nuclear factor kappa B kinase regulatory subunit gamma involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr  X:154,541,238...154,565,046
Ensembl chr  X:154,541,199...154,565,046
JBrowse link
G IL4 interleukin 4 involved_in ISS UniProt GO_REF:0000024 NCBI chr 5:132,673,989...132,682,678
Ensembl chr 5:132,673,986...132,682,678
JBrowse link
G KDR kinase insert domain receptor acts_upstream_of_or_within IGI (PMID:23798385) MGI PMID:23798385 NCBI chr 4:55,078,481...55,125,595
Ensembl chr 4:55,078,481...55,125,595
JBrowse link
G LACRT lacritin involved_in IDA (PMID:23640897) FlyBase PMID:23640897 NCBI chr12:54,630,811...54,634,895
Ensembl chr12:54,630,811...54,634,895
JBrowse link
G LARP1 La ribonucleoprotein 1, translational regulator involved_in IMP (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr 5:154,682,979...154,817,605
Ensembl chr 5:154,682,986...154,817,605
JBrowse link
G MAP3K7 mitogen-activated protein kinase kinase kinase 7 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 6:90,513,579...90,587,072
Ensembl chr 6:90,513,573...90,587,086
JBrowse link
G PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 involved_in IMP (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr11:117,144,287...117,178,173
Ensembl chr11:117,144,284...117,176,894
JBrowse link
G PIM2 Pim-2 proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17476689) Ensembl
MGI
PMID:17476689 GO_REF:0000107 NCBI chr  X:48,913,182...48,919,024
Ensembl chr  X:48,913,182...48,919,024
JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IMP (PMID:20871098) ParkinsonsUK-UCL PMID:20871098 NCBI chr 1:20,633,458...20,651,511
Ensembl chr 1:20,633,458...20,651,511
JBrowse link
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in TAS (PMID:25126726) ParkinsonsUK-UCL PMID:25126726 NCBI chr 1:56,645,314...56,715,335
Ensembl chr 1:56,645,314...56,715,335
JBrowse link
G RAB12 RAB12, member RAS oncogene family involved_in ISO (PMID:23357852) UniProt PMID:23357852 NCBI chr18:8,609,437...8,639,383
Ensembl chr18:8,609,437...8,639,383
JBrowse link
G RUFY4 RUN and FYVE domain containing 4 involved_in IEA
IBA
IMP
(PMID:26416964) InterPro
GO_Central
UniProt
PMID:26416964 GO_REF:0000002 GO_REF:0000033 NCBI chr 2:218,034,934...218,090,652
Ensembl chr 2:218,034,960...218,090,584
JBrowse link
G SCOC short coiled-coil protein involved_in IDA (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr 4:140,257,308...140,385,728
Ensembl chr 4:140,257,286...140,385,728
JBrowse link
G SESN1 sestrin 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:108,984,309...109,094,846
Ensembl chr 6:108,984,309...109,094,846
JBrowse link
G SESN2 sestrin 2 involved_in IMP
IBA
(PMID:23274085) UniProt
GO_Central
PMID:23274085 GO_REF:0000033 NCBI chr 1:28,259,518...28,282,491
Ensembl chr 1:28,259,518...28,282,491
JBrowse link
G SESN3 sestrin 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:95,165,513...95,232,475
Ensembl chr11:95,165,513...95,232,541
JBrowse link
G SIRT1 sirtuin 1 involved_in IEA
IDA
(PMID:18296641) Ensembl
UniProt
PMID:18296641 GO_REF:0000107 NCBI chr10:67,884,656...67,918,390
Ensembl chr10:67,884,656...67,918,390
JBrowse link
G STING1 stimulator of interferon response cGAMP interactor 1 involved_in IEA
IBA
IDA
(PMID:30568238), (PMID:30842662), (PMID:37535724) Ensembl
GO_Central
UniProt
PMID:30568238 PMID:30842662 PMID:37535724 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:139,475,533...139,482,758
Ensembl chr 5:139,475,533...139,482,935
JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit involved_in IMP (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr19:39,445,582...39,476,670
Ensembl chr19:39,436,156...39,476,670
JBrowse link
G TBK1 TANK binding kinase 1 involved_in IDA (PMID:27103069) HGNC PMID:27103069 NCBI chr12:64,452,120...64,502,114
Ensembl chr12:64,452,090...64,502,114
JBrowse link
G TRIM13 tripartite motif containing 13 involved_in IDA
IBA
(PMID:22178386) UniProt
GO_Central
PMID:22178386 GO_REF:0000033 NCBI chr13:49,997,042...50,018,467
Ensembl chr13:49,995,888...50,020,481
JBrowse link
G TSC1 TSC complex subunit 1 ISO RGD PMID:23435171 RGD:10448950 NCBI chr 9:132,891,349...132,945,378
Ensembl chr 9:132,891,348...132,946,874
JBrowse link
G TSC2 TSC complex subunit 2 involved_in
acts_upstream_of_or_within
IGI
ISO
(PMID:23778976)
(PMID:20453062)
ParkinsonsUK-UCL
MGI
PMID:20453062 PMID:23778976 NCBI chr16:2,047,985...2,089,491
Ensembl chr16:2,047,967...2,089,491
JBrowse link
G WAC WW domain containing adaptor with coiled-coil involved_in IMP (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr10:28,532,779...28,623,112
Ensembl chr10:28,532,493...28,623,112
JBrowse link
G WDR24 WD repeat domain 24 involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:684,622...690,398
Ensembl chr16:684,622...690,444
JBrowse link
positive regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAG3 BAG cochaperone 3 involved_in IMP (PMID:18006506) ARUK-UCL PMID:18006506 NCBI chr10:119,651,380...119,677,819
Ensembl chr10:119,651,380...119,677,819
JBrowse link
G CSNK2A1 casein kinase 2 alpha 1 involved_in IDA (PMID:22017874) UniProt PMID:22017874 NCBI chr20:472,498...543,790
Ensembl chr20:472,498...543,835
JBrowse link
G HSPB8 heat shock protein family B (small) member 8 involved_in IMP (PMID:18006506) ARUK-UCL PMID:18006506 NCBI chr12:119,178,931...119,194,746
Ensembl chr12:119,171,555...119,224,855
JBrowse link
G HTT huntingtin involved_in IMP (PMID:25686248) ParkinsonsUK-UCL PMID:25686248 NCBI chr 4:3,074,681...3,243,960
Ensembl chr 4:3,041,363...3,243,957
JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in IDA (PMID:31857589) UniProt PMID:31857589 NCBI chr11:65,712,018...65,719,604
Ensembl chr11:65,711,996...65,719,604
JBrowse link
G ZDHHC19 zinc finger DHHC-type palmitoyltransferase 19 involved_in IDA (PMID:37802024) UniProt PMID:37802024 NCBI chr 3:196,197,452...196,211,400
Ensembl chr 3:196,197,452...196,211,437
JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG2A autophagy related 2A involved_in IDA (PMID:30952800), (PMID:31271352) UniProt PMID:30952800 PMID:31271352 NCBI chr11:64,894,546...64,917,209
Ensembl chr11:64,894,546...64,917,209
JBrowse link
G ATG7 autophagy related 7 ISO RGD PMID:33372336 RGD:407571673 NCBI chr 3:11,272,397...11,576,353
Ensembl chr 3:11,272,309...11,557,665
JBrowse link
G BECN1 beclin 1 involved_in ISO
IEA
RGD
Ensembl
PMID:25561470 GO_REF:0000107 RGD:11561937 NCBI chr17:42,810,132...42,824,282
Ensembl chr17:42,810,134...42,833,350
JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IMP (PMID:21072319) BHF-UCL PMID:21072319 NCBI chr 1:109,114,115...109,206,781
Ensembl chr 1:109,113,679...109,206,781
JBrowse link
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 involved_in IMP (PMID:25484098) GO_Central PMID:25484098 NCBI chr 9:127,451,486...127,503,501
Ensembl chr 9:127,451,489...127,503,499
JBrowse link
G MOAP1 modulator of apoptosis 1 involved_in IEA
IMP
(PMID:33783314) Ensembl
UniProt
PMID:33783314 GO_REF:0000107 NCBI chr14:93,182,199...93,184,897
Ensembl chr14:93,182,199...93,184,923
JBrowse link
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr10:22,534,854...22,714,578
Ensembl chr10:22,534,854...22,714,578
JBrowse link
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr17:38,765,691...38,799,556
Ensembl chr17:38,765,691...38,800,126
JBrowse link
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr12:57,591,192...57,603,418
Ensembl chr12:57,591,174...57,603,418
JBrowse link
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 involved_in IMP
IBA
(PMID:25495476) GO_Central PMID:25495476 GO_REF:0000033 NCBI chr 2:135,052,292...135,176,396
Ensembl chr 2:135,052,289...135,176,667
JBrowse link
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IMP (PMID:25495476) GO_Central PMID:25495476 NCBI chr 1:220,148,293...220,272,453
Ensembl chr 1:220,148,293...220,272,529
JBrowse link
G RALB RAS like proto-oncogene B involved_in IMP (PMID:24056301) UniProt PMID:24056301 NCBI chr 2:120,240,070...120,294,710
Ensembl chr 2:120,240,064...120,294,710
JBrowse link
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 involved_in IMP (PMID:21068542) UniProt PMID:21068542 NCBI chr 1:86,704,576...86,748,184
Ensembl chr 1:86,704,570...86,748,184
JBrowse link
G SNX18 sorting nexin 18 involved_in IMP (PMID:29437695) UniProt PMID:29437695 NCBI chr 5:54,517,759...54,648,005
Ensembl chr 5:54,517,759...54,546,586
JBrowse link
G SNX30 sorting nexin family member 30 involved_in IMP (PMID:32513819) UniProt PMID:32513819 NCBI chr 9:112,749,723...112,885,769
Ensembl chr 9:112,750,760...112,881,671
JBrowse link
G SNX4 sorting nexin 4 involved_in IMP
IBA
(PMID:32513819), (PMID:33468622) UniProt
GO_Central
PMID:32513819 PMID:33468622 GO_REF:0000033 NCBI chr 3:125,446,650...125,520,202
Ensembl chr 3:125,446,650...125,520,202
JBrowse link
G SNX7 sorting nexin 7 involved_in IMP (PMID:32513819) UniProt PMID:32513819 NCBI chr 1:98,661,319...98,760,500
Ensembl chr 1:98,661,701...98,760,500
JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IDA (PMID:37943659) UniProt PMID:37943659 NCBI chr 9:116,687,305...116,701,299
Ensembl chr 9:116,687,305...116,701,300
JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in ISO
IEA
RGD
Ensembl
PMID:23448468 GO_REF:0000107 RGD:13208863 NCBI chr12:131,894,622...131,923,150
Ensembl chr12:131,894,622...131,923,150
JBrowse link
G WDR45 WD repeat domain 45 involved_in IDA (PMID:31271352) UniProt PMID:31271352 NCBI chr  X:49,074,442...49,101,178
Ensembl chr  X:49,074,433...49,101,170
JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IDA (PMID:31271352) UniProt PMID:31271352 NCBI chr17:68,421,281...68,457,496
Ensembl chr17:68,420,948...68,457,513
JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADRB2 adrenoceptor beta 2 involved_in IDA (PMID:23708524) GO_Central PMID:23708524 NCBI chr 5:148,826,611...148,828,623
Ensembl chr 5:148,826,611...148,828,623
JBrowse link
G CALCOCO2 calcium binding and coiled-coil domain 2 involved_in IMP
IBA
(PMID:25771791) GO_Central PMID:25771791 GO_REF:0000033 NCBI chr17:48,831,035...48,865,245
Ensembl chr17:48,831,018...48,868,228
JBrowse link
G CLEC16A C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chr16:10,944,564...11,182,186
Ensembl chr16:10,944,539...11,182,186
JBrowse link
G FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in IMP
IBA
(PMID:26468287) ParkinsonsUK-UCL
GO_Central
PMID:26468287 GO_REF:0000033 NCBI chr 3:45,917,903...45,995,824
Ensembl chr 3:45,917,903...45,995,824
JBrowse link
G IRGM immunity related GTPase M involved_in IMP (PMID:16888103) UniProt PMID:16888103 NCBI chr 5:150,846,521...150,902,402
Ensembl chr 5:150,846,521...150,900,736
JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IMP (PMID:28195531) HGNC PMID:28195531 NCBI chr17:18,315,293...18,328,056
Ensembl chr17:18,315,293...18,328,056
JBrowse link
G TOM1 target of myb1 membrane trafficking protein involved_in IMP (PMID:23023224) UniProt PMID:23023224 NCBI chr22:35,299,275...35,347,973
Ensembl chr22:35,299,275...35,347,992
JBrowse link
G UVRAG UV radiation resistance associated involved_in TAS (PMID:21118109) ParkinsonsUK-UCL PMID:21118109 NCBI chr11:75,815,210...76,144,232
Ensembl chr11:75,815,210...76,144,232
JBrowse link
positive regulation of lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADRB2 adrenoceptor beta 2 involved_in IDA (PMID:23708524) GO_Central PMID:23708524 NCBI chr 5:148,826,611...148,828,623
Ensembl chr 5:148,826,611...148,828,623
JBrowse link
G HTT huntingtin involved_in IMP (PMID:25686248) ParkinsonsUK-UCL PMID:25686248 NCBI chr 4:3,074,681...3,243,960
Ensembl chr 4:3,041,363...3,243,957
JBrowse link
G SESN2 sestrin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22958918) Ensembl
MGI
PMID:22958918 GO_REF:0000107 NCBI chr 1:28,259,518...28,282,491
Ensembl chr 1:28,259,518...28,282,491
JBrowse link
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 acts_upstream_of_or_within IDA (PMID:25332431) MGI PMID:25332431 NCBI chr 9:92,031,147...92,115,413
Ensembl chr 9:92,000,087...92,115,413
JBrowse link
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 acts_upstream_of_or_within IDA (PMID:25332431) MGI PMID:25332431 NCBI chr14:77,505,997...77,616,637
Ensembl chr14:77,505,997...77,616,637
JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in IDA (PMID:30217973) UniProt PMID:30217973 NCBI chr11:46,396,412...46,594,023
Ensembl chr11:46,396,414...46,594,125
JBrowse link
G ATG7 autophagy related 7 ISO RGD PMID:37042059 RGD:407532700 NCBI chr 3:11,272,397...11,576,353
Ensembl chr 3:11,272,309...11,557,665
JBrowse link
G CERS1 ceramide synthase 1 involved_in IDA (PMID:22922758) UniProt PMID:22922758 NCBI chr19:18,868,545...18,896,982
Ensembl chr19:18,868,545...18,896,727
JBrowse link
G DELE1 DAP3 binding cell death enhancer 1 involved_in IDA (PMID:38340717) UniProt PMID:38340717 NCBI chr 5:141,923,871...141,942,047
Ensembl chr 5:141,923,855...141,942,047
JBrowse link
G EIF2AK1 eukaryotic translation initiation factor 2 alpha kinase 1 involved_in IDA (PMID:38340717) UniProt PMID:38340717 NCBI chr 7:6,022,247...6,059,175
Ensembl chr 7:6,022,247...6,059,175
JBrowse link
G FBXO7 F-box protein 7 involved_in IEA
IDA
(PMID:26310625) Ensembl
ParkinsonsUK-UCL
PMID:26310625 GO_REF:0000107 NCBI chr22:32,474,811...32,498,829
Ensembl chr22:32,474,676...32,498,829
JBrowse link
G HTT huntingtin involved_in IMP (PMID:25686248) ParkinsonsUK-UCL PMID:25686248 NCBI chr 4:3,074,681...3,243,960
Ensembl chr 4:3,041,363...3,243,957
JBrowse link
G IRGM immunity related GTPase M involved_in IDA (PMID:21102437), (PMID:32939830) UniProt PMID:21102437 PMID:32939830 NCBI chr 5:150,846,521...150,902,402
Ensembl chr 5:150,846,521...150,900,736
JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr16:50,693,606...50,733,075
Ensembl chr16:50,693,588...50,733,077
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in ISO
IDA
(PMID:26310625) RGD
ParkinsonsUK-UCL
PMID:26310625 PMID:28608965 RGD:13432560 NCBI chr 6:161,347,417...162,727,766
Ensembl chr 6:161,347,417...162,727,775
JBrowse link
G SLC25A4 solute carrier family 25 member 4 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 4:185,143,266...185,150,382
Ensembl chr 4:185,143,266...185,150,382
JBrowse link
G SLC25A5 solute carrier family 25 member 5 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr  X:119,468,444...119,471,396
Ensembl chr  X:119,468,422...119,471,396
JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr16:680,410...682,801
Ensembl chr16:680,224...682,870
JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A involved_in IDA (PMID:23685073) UniProt PMID:23685073 NCBI chr  X:119,574,563...119,584,423
Ensembl chr  X:119,474,802...119,591,083
JBrowse link
G VPS13D vacuolar protein sorting 13 homolog D involved_in IMP (PMID:29307555) UniProt PMID:29307555 NCBI chr 1:12,230,030...12,512,047
Ensembl chr 1:12,230,030...12,512,047
JBrowse link
positive regulation of reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK5RAP3 CDK5 regulatory subunit associated protein 3 involved_in IDA
IMP
(PMID:36543799)
(PMID:32851973)
UniProt PMID:32851973 PMID:36543799 NCBI chr17:47,967,904...47,981,781
Ensembl chr17:47,967,810...47,981,781
JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IDA (PMID:36543799) UniProt PMID:36543799 NCBI chr20:3,190,350...3,204,682
Ensembl chr20:3,190,350...3,204,685
JBrowse link
G UFL1 UFM1 specific ligase 1 involved_in IDA (PMID:36543799) UniProt PMID:36543799 NCBI chr 6:96,521,806...96,555,276
Ensembl chr 6:96,521,595...96,555,276
JBrowse link
positive regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP5IF1 ATP synthase inhibitory factor subunit 1 involved_in IMP (PMID:24005319) ParkinsonsUK-UCL PMID:24005319 NCBI chr 1:28,236,124...28,238,100
Ensembl chr 1:28,236,109...28,246,906
JBrowse link
G CDC37 cell division cycle 37, HSP90 cochaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:10,391,133...10,403,542
Ensembl chr19:10,391,090...10,420,121
JBrowse link
G GBA1 glucosylceramidase beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23707074) ARUK-UCL
Ensembl
PMID:23707074 GO_REF:0000107 NCBI chr 1:155,234,452...155,244,627
Ensembl chr 1:155,234,452...155,244,699
JBrowse link
G HDAC6 histone deacetylase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:48,801,398...48,824,982
Ensembl chr  X:48,801,377...48,824,982
JBrowse link
G HK2 hexokinase 2 involved_in IMP (PMID:23962723) ParkinsonsUK-UCL PMID:23962723 NCBI chr 2:74,834,127...74,893,359
Ensembl chr 2:74,834,127...74,893,359
JBrowse link
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in IDA (PMID:30217973) CACAO PMID:30217973 NCBI chr  X:53,532,096...53,686,719
Ensembl chr  X:53,532,096...53,686,752
JBrowse link
G MUL1 mitochondrial E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:20,499,448...20,508,151
Ensembl chr 1:20,499,448...20,508,151
JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IMP (PMID:20871098) ParkinsonsUK-UCL PMID:20871098 NCBI chr 1:20,633,458...20,651,511
Ensembl chr 1:20,633,458...20,651,511
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IDA
IMP
(PMID:20457763)
(PMID:20871098), (PMID:23212910)
ParkinsonsUK-UCL PMID:20457763 PMID:20871098 PMID:23212910 NCBI chr 6:161,347,417...162,727,766
Ensembl chr 6:161,347,417...162,727,775
JBrowse link
G TOMM7 translocase of outer mitochondrial membrane 7 involved_in IMP (PMID:24270810) ParkinsonsUK-UCL PMID:24270810 NCBI chr 7:22,812,974...22,822,849
Ensembl chr 7:22,812,628...22,822,849
JBrowse link
G VDAC1 voltage dependent anion channel 1 involved_in IMP (PMID:32047033) UniProt PMID:32047033 NCBI chr 5:133,971,871...134,114,540
Ensembl chr 5:133,971,871...134,004,975
JBrowse link
positive regulation of xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IRGM immunity related GTPase M involved_in IDA (PMID:25891078) UniProt PMID:25891078 NCBI chr 5:150,846,521...150,902,402
Ensembl chr 5:150,846,521...150,900,736
JBrowse link
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 involved_in IMP (PMID:23245322) GO_Central PMID:23245322 NCBI chr 9:127,451,486...127,503,501
Ensembl chr 9:127,451,489...127,503,499
JBrowse link
G MAPK3 mitogen-activated protein kinase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22033934) Ensembl
MGI
PMID:22033934 GO_REF:0000107 NCBI chr16:30,114,105...30,123,220
Ensembl chr16:30,114,105...30,123,506
JBrowse link
G NOD1 nucleotide binding oligomerization domain containing 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22033934) Ensembl
MGI
PMID:22033934 GO_REF:0000107 NCBI chr 7:30,424,527...30,478,784
Ensembl chr 7:30,424,527...30,478,784
JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22033934) Ensembl
MGI
PMID:22033934 GO_REF:0000107 NCBI chr16:50,693,606...50,733,075
Ensembl chr16:50,693,588...50,733,077
JBrowse link
G OPTN optineurin involved_in IMP (PMID:21617041) ParkinsonsUK-UCL PMID:21617041 NCBI chr10:13,100,082...13,138,308
Ensembl chr10:13,099,449...13,138,308
JBrowse link
G RIPK2 receptor interacting serine/threonine kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22033934) Ensembl
MGI
PMID:22033934 GO_REF:0000107 NCBI chr 8:89,757,816...89,791,064
Ensembl chr 8:89,757,806...89,791,064
JBrowse link
G RNF31 ring finger protein 31 involved_in IDA (PMID:28481331) UniProt PMID:28481331 NCBI chr14:24,146,875...24,160,655
Ensembl chr14:24,146,683...24,160,660
JBrowse link
G TBK1 TANK binding kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:64,452,120...64,502,114
Ensembl chr12:64,452,090...64,502,114
JBrowse link
G TLR2 toll like receptor 2 acts_upstream_of_or_within ISO (PMID:22033934) MGI PMID:22033934 NCBI chr 4:153,684,280...153,710,637
Ensembl chr 4:153,684,050...153,706,260
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20497
    cellular process 19744
      process utilizing autophagic mechanism 638
        autophagy 638
          macroautophagy 392
            positive regulation of macroautophagy 101
              positive regulation of aggrephagy 6
              positive regulation of autophagosome assembly 21
              positive regulation of autophagosome maturation 8
              positive regulation of lipophagy 5
              positive regulation of mitophagy + 25
              positive regulation of reticulophagy 3
              positive regulation of xenophagy 10
Path 2
Term Annotations click to browse term
  biological_process 20497
    biological regulation 13645
      regulation of biological process 13243
        positive regulation of biological process 7077
          positive regulation of cellular process 6712
            positive regulation of metabolic process 4059
              positive regulation of catabolic process 713
                positive regulation of autophagy 171
                  positive regulation of macroautophagy 101
                    positive regulation of aggrephagy 6
                    positive regulation of autophagosome assembly 21
                    positive regulation of autophagosome maturation 8
                    positive regulation of lipophagy 5
                    positive regulation of mitophagy + 25
                    positive regulation of reticulophagy 3
                    positive regulation of xenophagy 10
paths to the root