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ONTOLOGY REPORT - ANNOTATIONS

Term:macroautophagy
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Accession:GO:0016236 term browser browse the term
Definition:The autophagic process that proceeds via the formation of an autophagosome.
Synonyms:narrow_synonym: selective autophagy
 broad_synonym: autophagy
 alt_id: GO:0034262
 xref: Reactome:R-HSA-1632852 "Macroautophagy";   Reactome:R-HSA-5205685 "PINK1-PRKN Mediated Mitophagy";   Reactome:R-HSA-8934903 "Receptor Mediated Mitophagy"

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show annotations for term's descendants           Sort by:
macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936742:1,000,029...1,007,885
Ensembl chrNW_004936742:999,771...1,007,885 		JBrowse link
G Atg14 autophagy related 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:155,709...195,860
Ensembl chrNW_004936495:154,593...195,917 		JBrowse link
G Atg16l1 autophagy related 16 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936525:3,973,574...4,010,442
Ensembl chrNW_004936525:3,972,558...4,010,514 		JBrowse link
G Atg16l2 autophagy related 16 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:2,070,985...2,084,141
Ensembl chrNW_004936498:2,070,881...2,083,968 		JBrowse link
G Atg3 autophagy related 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24035364) Ensembl
MGI		 PMID:24035364 GO_REF:0000107 NCBI chrNW_004936536:232,343...257,949
Ensembl chrNW_004936536:232,192...257,954 		JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22496425), (PMID:23704209), (PMID:24035364)
(PMID:20453062)		 Ensembl
MGI
UniProt		 PMID:20453062 PMID:22496425 PMID:23704209 PMID:24035364 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936564:2,759,085...2,885,394
Ensembl chrNW_004936564:2,758,598...2,885,420 		JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22496425), (PMID:23704209)
(PMID:24035364)		 Ensembl
MGI		 PMID:22496425 PMID:23704209 PMID:24035364 GO_REF:0000107 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Becn1 beclin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14657337)
(PMID:17468177)		 Ensembl
MGI		 PMID:14657337 PMID:17468177 GO_REF:0000107 NCBI chrNW_004936490:17,518,100...17,531,126
Ensembl chrNW_004936490:17,517,751...17,531,151 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16714284) Ensembl
MGI		 PMID:16714284 GO_REF:0000107 NCBI chrNW_004936501:11,955,334...11,967,338
Ensembl chrNW_004936501:11,955,184...11,967,436 		JBrowse link
G CUNH1orf116 chromosome unknown C1orf116 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:5,586,969...5,615,159
Ensembl chrNW_004936557:5,584,324...5,616,998
Ensembl chrNW_004936557:5,584,324...5,616,998 		JBrowse link
G Ei24 EI24 autophagy associated transmembrane protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936743:1,957,948...1,970,885
Ensembl chrNW_004936743:1,958,829...1,969,540 		JBrowse link
G Hdac10 histone deacetylase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:562,038...567,709
Ensembl chrNW_004936629:562,022...567,822 		JBrowse link
G Hmox1 heme oxygenase 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:20705711) Ensembl
MGI		 PMID:20705711 GO_REF:0000107 NCBI chrNW_004936492:5,042,353...5,049,216
Ensembl chrNW_004936492:5,042,330...5,049,311 		JBrowse link
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:24,448,402...24,536,163
Ensembl chrNW_004936476:24,448,350...24,536,196 		JBrowse link
G LOC101976670 ubiquitin-like protein ATG12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936673:2,861,475...2,862,529 JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:6,104,748...6,106,348
Ensembl chrNW_004936561:6,104,742...6,106,699 		JBrowse link
G Map1lc3c microtubule associated protein 1 light chain 3 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:8,492,840...8,497,028
Ensembl chrNW_004936526:8,492,840...8,496,744 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in
acts_upstream_of		 IEA
ISO		 (PMID:16714284) Ensembl
MGI		 PMID:16714284 GO_REF:0000107 NCBI chrNW_004936474:158,376...282,310
Ensembl chrNW_004936474:157,590...282,342 		JBrowse link
G Myo5a myosin VA ISO RGD PMID:29217155 RGD:42721980 NCBI chrNW_004936471:14,105,832...14,257,386
Ensembl chrNW_004936471:14,111,841...14,254,246 		JBrowse link
G Nbr1 NBR1 autophagy cargo receptor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:17,803,074...17,832,349
Ensembl chrNW_004936490:17,803,006...17,832,945 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:17468177) Ensembl
MGI		 PMID:17468177 GO_REF:0000107 NCBI chrNW_004936550:2,983,172...3,032,222
Ensembl chrNW_004936550:2,980,442...3,032,229 		JBrowse link
G Pdcd6ip programmed cell death 6 interacting protein involved_in ISO (PMID:25686249) UniProt PMID:25686249 NCBI chrNW_004936473:24,010,942...24,086,836
Ensembl chrNW_004936473:24,010,935...24,086,846 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004936528:1,845,372...1,964,908
Ensembl chrNW_004936528:1,869,527...1,964,183 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24098492) Ensembl
MGI		 PMID:24098492 GO_REF:0000107 NCBI chrNW_004936567:314,957...377,544
Ensembl chrNW_004936567:314,898...378,045 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936517:4,009,938...4,145,518
Ensembl chrNW_004936517:4,033,247...4,145,422 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936529:4,162,276...4,232,471
Ensembl chrNW_004936529:4,162,112...4,232,510 		JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of		 IEA
ISO		 (PMID:17476689) Ensembl
MGI		 PMID:17476689 GO_REF:0000107 NCBI chrNW_004936721:839,876...844,488
Ensembl chrNW_004936721:839,874...844,488 		JBrowse link
G Plaa phospholipase A2 activating protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936611:2,665,294...2,698,372
Ensembl chrNW_004936611:2,665,370...2,700,538 		JBrowse link
G Rab2a RAB2A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:12,626,242...12,680,334
Ensembl chrNW_004936496:12,626,250...12,680,365 		JBrowse link
G Rab2b RAB2B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936880:610,903...628,176
Ensembl chrNW_004936880:610,878...628,753 		JBrowse link
G Snf8 SNF8 subunit of ESCRT-II involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:12,507,147...12,520,424
Ensembl chrNW_004936490:12,507,116...12,523,674 		JBrowse link
G Sqstm1 sequestosome 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936739:943,080...955,296
Ensembl chrNW_004936739:938,745...955,263 		JBrowse link
G Tbc1d5 TBC1 domain family member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:9,868,657...10,294,554
Ensembl chrNW_004936473:9,868,430...10,188,484 		JBrowse link
G Tcirg1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23704209) Ensembl
MGI		 PMID:23704209 GO_REF:0000107 NCBI chrNW_004936599:2,070,211...2,079,169
Ensembl chrNW_004936599:2,066,847...2,079,206 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936750:756,602...781,422
Ensembl chrNW_004936750:756,072...781,549 		JBrowse link
G Tmem74 transmembrane protein 74 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:36,084,902...36,091,517
Ensembl chrNW_004936470:36,087,350...36,088,267 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24713655) Ensembl
MGI		 PMID:24713655 GO_REF:0000107 NCBI chrNW_004936561:5,984,044...5,992,536
Ensembl chrNW_004936561:5,984,079...5,992,536 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936828:543,651...588,673
Ensembl chrNW_004936828:542,407...588,679 		JBrowse link
G Ubxn6 UBX domain protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,565,473...2,578,721
Ensembl chrNW_004936588:2,565,461...2,578,624 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21258367) Ensembl
MGI		 PMID:21258367 GO_REF:0000107 NCBI chrNW_004936660:2,160,394...2,188,848
Ensembl chrNW_004936660:2,163,844...2,187,080 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,085,959...3,102,461
Ensembl chrNW_004936524:3,085,500...3,102,466 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936478:14,296,191...14,454,650
Ensembl chrNW_004936478:14,293,108...14,454,707 		JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936486:3,010,169...3,353,512
Ensembl chrNW_004936486:3,010,490...3,347,424 		JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936495:11,043,813...11,064,113
Ensembl chrNW_004936495:11,045,429...11,064,206 		JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:2,304,521...2,364,472
Ensembl chrNW_004936488:2,304,438...2,364,709 		JBrowse link
aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg4a autophagy related 4A cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936499:6,641,192...6,691,685
Ensembl chrNW_004936499:6,640,957...6,691,995 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936745:291,311...308,469
Ensembl chrNW_004936745:292,746...307,746 		JBrowse link
G Atg4c autophagy related 4C cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936692:439,475...532,633
Ensembl chrNW_004936692:439,280...532,657 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936659:823,318...830,642
Ensembl chrNW_004936659:823,172...830,521 		JBrowse link
G Atg5 autophagy related 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:2,759,085...2,885,394
Ensembl chrNW_004936564:2,758,598...2,885,420 		JBrowse link
G LOC101974150 WD repeat and FYVE domain-containing protein 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936738:31,426...150,463
Ensembl chrNW_004936738:1,841...147,264 		JBrowse link
G Map1lc3c microtubule associated protein 1 light chain 3 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:8,492,840...8,497,028
Ensembl chrNW_004936526:8,492,840...8,496,744 		JBrowse link
G Sqstm1 sequestosome 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936739:943,080...955,296
Ensembl chrNW_004936739:938,745...955,263 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936828:543,651...588,673
Ensembl chrNW_004936828:542,407...588,679 		JBrowse link
G Wdr81 WD repeat domain 81 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:7,856,263...7,868,249
Ensembl chrNW_004936538:7,856,185...7,868,259 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936562:2,493,823...2,676,868
Ensembl chrNW_004936562:2,493,774...2,676,912 		JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:246,335...250,278
Ensembl chrNW_004936543:246,335...254,975 		JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:30930081) MGI
Ensembl		 PMID:30930081 GO_REF:0000107 NCBI chrNW_004936765:1,112,333...1,123,244
Ensembl chrNW_004936765:1,111,882...1,123,316 		JBrowse link
G Atg10 autophagy related 10 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936469:1,241,854...1,506,174
Ensembl chrNW_004936469:1,242,111...1,505,743 		JBrowse link
G Atg101 autophagy related 101 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936512:9,518,128...9,525,986
Ensembl chrNW_004936512:9,518,074...9,526,961 		JBrowse link
G Atg12 autophagy related 12 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936742:1,000,029...1,007,885
Ensembl chrNW_004936742:999,771...1,007,885 		JBrowse link
G Atg13 autophagy related 13 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19211835) MGI
Ensembl
InterPro		 PMID:19211835 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936562:2,424,398...2,473,103
Ensembl chrNW_004936562:2,423,001...2,473,232 		JBrowse link
G Atg14 autophagy related 14 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936495:155,709...195,860
Ensembl chrNW_004936495:154,593...195,917 		JBrowse link
G Atg16l1 autophagy related 16 like 1 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936525:3,973,574...4,010,442
Ensembl chrNW_004936525:3,972,558...4,010,514 		JBrowse link
G Atg16l2 autophagy related 16 like 2 involved_in
NOT|involved_in		 IEA
ISO		 (PMID:22082872) Ensembl
UniProt
InterPro		 PMID:22082872 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936498:2,070,985...2,084,141
Ensembl chrNW_004936498:2,070,881...2,083,968 		JBrowse link
G Atg2a autophagy related 2A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:4,417,810...4,437,639
Ensembl chrNW_004936599:4,417,900...4,437,178 		JBrowse link
G Atg2b autophagy related 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936604:583,391...641,217
Ensembl chrNW_004936604:584,480...641,183 		JBrowse link
G Atg3 autophagy related 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21220506) Ensembl
TreeGrafter
MGI		 PMID:21220506 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936536:232,343...257,949
Ensembl chrNW_004936536:232,192...257,954 		JBrowse link
G Atg4a autophagy related 4A cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936499:6,641,192...6,691,685
Ensembl chrNW_004936499:6,640,957...6,691,995 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936745:291,311...308,469
Ensembl chrNW_004936745:292,746...307,746 		JBrowse link
G Atg4c autophagy related 4C cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936692:439,475...532,633
Ensembl chrNW_004936692:439,280...532,657 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936659:823,318...830,642
Ensembl chrNW_004936659:823,172...830,521 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23704209) RGD
MGI
Ensembl		 PMID:16420522 PMID:23704209 GO_REF:0000107 RGD:1643189 NCBI chrNW_004936564:2,759,085...2,885,394
Ensembl chrNW_004936564:2,758,598...2,885,420 		JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23704209) Ensembl
TreeGrafter
MGI		 PMID:23704209 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15755735), (PMID:22456507)
(PMID:23402761)
(PMID:22456507)		 MGI
Ensembl		 PMID:15755735 PMID:22456507 PMID:23402761 GO_REF:0000107 NCBI chrNW_004936569:1,635,958...1,645,600
Ensembl chrNW_004936569:1,635,836...1,645,815 		JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15755735) MGI
Ensembl		 PMID:15755735 GO_REF:0000107 NCBI chrNW_004936527:6,445,824...6,453,582
Ensembl chrNW_004936527:6,446,667...6,453,511 		JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:3,300,941...3,357,595
Ensembl chrNW_004936558:3,300,941...3,357,941 		JBrowse link
G Becn1 beclin 1 involved_in ISO
IEA		 RGD
TreeGrafter
Ensembl
UniProt		 PMID:16420522 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 RGD:1643189 NCBI chrNW_004936490:17,518,100...17,531,126
Ensembl chrNW_004936490:17,517,751...17,531,151 		JBrowse link
G Becn2 beclin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936526:8,532,991...8,534,271
Ensembl chrNW_004936526:8,533,009...8,534,271 		JBrowse link
G Ctsd cathepsin D involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15452145) Ensembl
MGI		 PMID:15452145 GO_REF:0000107 NCBI chrNW_004936816:680,798...690,959
Ensembl chrNW_004936816:680,798...691,039 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936704:653,434...736,660
Ensembl chrNW_004936704:653,403...739,151 		JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936677:367,364...368,268
Ensembl chrNW_004936677:367,341...368,265 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24430976) Ensembl
MGI		 PMID:24430976 GO_REF:0000107 NCBI chrNW_004936625:761,013...819,826
Ensembl chrNW_004936625:738,124...821,566 		JBrowse link
G LOC101958458 T-cell-specific guanine nucleotide triphosphate-binding protein 2-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936826:912,414...918,490 JBrowse link
G LOC101972667 immunity related GTPase M involved_in ISO (PMID:16888103) UniProt PMID:16888103 NCBI chrNW_004936504:4,055,091...4,056,089 JBrowse link
G LOC101973519 interferon-inducible GTPase 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936504:4,125,169...4,127,174 JBrowse link
G LOC101976670 ubiquitin-like protein ATG12 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936673:2,861,475...2,862,529 JBrowse link
G LOC106144852 interferon-inducible GTPase 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936504:4,173,569...4,181,993 JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:6,104,748...6,106,348
Ensembl chrNW_004936561:6,104,742...6,106,699 		JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:23695157) Ensembl
MGI		 PMID:23695157 GO_REF:0000107 NCBI chrNW_004936714:1,792,893...1,870,338
Ensembl chrNW_004936714:1,792,845...1,870,389 		JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936485:17,217,462...17,238,253
Ensembl chrNW_004936485:17,217,462...17,238,628 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23455425) MGI
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chrNW_004936621:172,727...206,803
Ensembl chrNW_004936621:175,387...206,662 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:24098492) RGD
TreeGrafter
MGI
Ensembl		 PMID:12453151 PMID:24098492 GO_REF:0000107 GO_REF:0000118 RGD:2303129 NCBI chrNW_004936517:4,009,938...4,145,518
Ensembl chrNW_004936517:4,033,247...4,145,422 		JBrowse link
G Psen1 presenilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15452145) Ensembl
MGI		 PMID:15452145 GO_REF:0000107 NCBI chrNW_004936488:2,464,623...2,528,807
Ensembl chrNW_004936488:2,464,527...2,530,065 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (PMID:22939626) UniProt PMID:22939626 NCBI chrNW_004936491:9,858,645...9,891,674 JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:4,095,829...4,127,714
Ensembl chrNW_004936476:4,095,329...4,127,701 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:8,167,567...8,183,105
Ensembl chrNW_004936535:8,167,551...8,183,111 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:297,600...304,929
Ensembl chrNW_004936798:296,066...305,176 		JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936590:260,685...335,143
Ensembl chrNW_004936590:260,685...334,721 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936569:654,904...676,012
Ensembl chrNW_004936569:657,071...675,292 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936531:8,555,966...8,562,829
Ensembl chrNW_004936531:8,555,637...8,562,885 		JBrowse link
G Stx12 syntaxin 12 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:12,019,099...12,057,028
Ensembl chrNW_004936474:12,019,041...12,060,213 		JBrowse link
G Synpo2 synaptopodin 2 involved_in ISO PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chrNW_004936869:321,821...461,253 JBrowse link
G Tcirg1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23908015) Ensembl
MGI		 PMID:23908015 GO_REF:0000107 NCBI chrNW_004936599:2,070,211...2,079,169
Ensembl chrNW_004936599:2,066,847...2,079,206 		JBrowse link
G Tmem41b transmembrane protein 41B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936528:8,824,964...8,842,483
Ensembl chrNW_004936528:8,814,873...8,845,167 		JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936544:7,882,710...7,891,668
Ensembl chrNW_004936544:7,881,102...7,891,463 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936561:5,984,044...5,992,536
Ensembl chrNW_004936561:5,984,079...5,992,536 		JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936533:1,857,685...1,874,973
Ensembl chrNW_004936533:1,857,666...1,876,120 		JBrowse link
G Trim32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:5,606,690...5,619,856
Ensembl chrNW_004936487:5,606,693...5,619,856 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936828:543,651...588,673
Ensembl chrNW_004936828:542,407...588,679 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936819:530,833...534,185
Ensembl chrNW_004936819:532,037...533,920 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936493:7,969,271...7,978,537
Ensembl chrNW_004936493:7,971,960...7,985,314 		JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936496:4,520,334...4,564,358
Ensembl chrNW_004936496:4,532,714...4,559,562 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936660:2,160,394...2,188,848
Ensembl chrNW_004936660:2,163,844...2,187,080 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936821:1,051,247...1,162,500
Ensembl chrNW_004936821:1,051,053...1,162,735 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:33,807,825...33,814,520
Ensembl chrNW_004936471:33,807,010...33,814,573 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:3,532,985...3,648,009
Ensembl chrNW_004936490:3,532,985...3,647,967 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:975,113...981,149
Ensembl chrNW_004936721:975,104...981,731 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936923:173,515...192,616
Ensembl chrNW_004936923:173,515...192,580 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:7,782,836...7,812,142
Ensembl chrNW_004936541:7,783,322...7,812,054 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936765:909,118...946,788
Ensembl chrNW_004936765:907,877...946,822 		JBrowse link
autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg2b AFG2 AAA ATPase homolog B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:8,064,708...8,078,968
Ensembl chrNW_004936471:8,065,363...8,080,939 		JBrowse link
G Atg12 autophagy related 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936742:1,000,029...1,007,885
Ensembl chrNW_004936742:999,771...1,007,885 		JBrowse link
G Atg14 autophagy related 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:155,709...195,860
Ensembl chrNW_004936495:154,593...195,917 		JBrowse link
G Becn1 beclin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:17,518,100...17,531,126
Ensembl chrNW_004936490:17,517,751...17,531,151 		JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:366,563...376,303
Ensembl chrNW_004936641:366,569...376,337 		JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004936626:391,942...394,440 JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004937062:133,361...136,329 JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936610:2,282,925...2,320,554
Ensembl chrNW_004936610:2,281,066...2,321,211 		JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936712:1,023,994...1,044,727
Ensembl chrNW_004936712:1,023,989...1,044,728 		JBrowse link
G Chmp4a charged multivesicular body protein 4A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:341,066...344,928
Ensembl chrNW_004936722:341,307...345,104 		JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:6,756,360...6,798,964
Ensembl chrNW_004936561:6,756,307...6,799,290 		JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936656:2,531,654...2,558,106
Ensembl chrNW_004936656:2,531,576...2,558,106 		JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004936524:1,804,643...1,820,491 JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:4,769,409...4,775,186
Ensembl chrNW_004936594:4,769,466...4,774,293 		JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,730,284...6,757,816
Ensembl chrNW_004936555:6,745,738...6,756,467 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16714284) Ensembl
MGI		 PMID:16714284 GO_REF:0000107 NCBI chrNW_004936501:11,955,334...11,967,338
Ensembl chrNW_004936501:11,955,184...11,967,436 		JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:27715390) MGI
Ensembl		 PMID:27715390 GO_REF:0000107 NCBI chrNW_004936596:1,187,402...1,205,277
Ensembl chrNW_004936596:1,184,314...1,205,377 		JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23479740) Ensembl
TreeGrafter
MGI		 PMID:23479740 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936517:841,402...941,054
Ensembl chrNW_004936517:841,411...939,581 		JBrowse link
G Lamp2 lysosomal associated membrane protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:9,584,221...9,622,330
Ensembl chrNW_004936479:9,584,221...9,610,420 		JBrowse link
G Lix1 limb and CNS expressed 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936523:6,324,014...6,373,323
Ensembl chrNW_004936523:6,323,971...6,373,351 		JBrowse link
G Lix1l limb and CNS expressed 1 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936867:673,332...692,005
Ensembl chrNW_004936867:675,337...692,515 		JBrowse link
G LOC101972667 immunity related GTPase M involved_in ISO (PMID:21757726) UniProt PMID:21757726 NCBI chrNW_004936504:4,055,091...4,056,089 JBrowse link
G LOC101976670 ubiquitin-like protein ATG12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936673:2,861,475...2,862,529 JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:6,104,748...6,106,348
Ensembl chrNW_004936561:6,104,742...6,106,699 		JBrowse link
G Map1lc3c microtubule associated protein 1 light chain 3 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:8,492,840...8,497,028
Ensembl chrNW_004936526:8,492,840...8,496,744 		JBrowse link
G Mcoln1 mucolipin TRP cation channel 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20600908) Ensembl
MGI		 PMID:20600908 GO_REF:0000107 NCBI chrNW_004936588:4,600,344...4,608,793
Ensembl chrNW_004936588:4,600,344...4,608,787 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29514215) Ensembl
MGI		 PMID:29514215 GO_REF:0000107 NCBI chrNW_004936642:2,745,889...2,833,286
Ensembl chrNW_004936642:2,801,908...2,832,830 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936517:4,009,938...4,145,518
Ensembl chrNW_004936517:4,033,247...4,145,422 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:4,162,276...4,232,471
Ensembl chrNW_004936529:4,162,112...4,232,510 		JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in ISO (PMID:28306502), (PMID:30704899)
(PMID:30704899)		 UniProt PMID:28306502 PMID:30704899 NCBI chrNW_004936857:839,418...870,961 JBrowse link
G Snap29 synaptosome associated protein 29 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:2,377,284...2,402,049
Ensembl chrNW_004936619:2,376,815...2,401,967 		JBrowse link
G Snapin SNAP associated protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20920792)
(PMID:22797916)		 Ensembl
MGI		 PMID:20920792 PMID:22797916 GO_REF:0000107 NCBI chrNW_004936580:3,449,585...3,464,709
Ensembl chrNW_004936580:3,462,987...3,464,214 		JBrowse link
G Snx14 sorting nexin 14 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936510:5,685,342...5,786,672
Ensembl chrNW_004936510:5,685,017...5,786,703 		JBrowse link
G Stx17 syntaxin 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:8,324,562...8,381,244
Ensembl chrNW_004936524:8,324,569...8,376,114 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936750:756,602...781,422
Ensembl chrNW_004936750:756,072...781,549 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936828:543,651...588,673
Ensembl chrNW_004936828:542,407...588,679 		JBrowse link
G Uvrag UV radiation resistance associated involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:4,555,325...4,869,099
Ensembl chrNW_004936498:4,555,276...4,870,896 		JBrowse link
G Vamp7 vesicle associated membrane protein 7 NOT|involved_in ISO (PMID:23217709) UniProt PMID:23217709 NCBI chrNW_004936958:345,055...393,384 JBrowse link
G Vamp8 vesicle associated membrane protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936712:1,688,126...1,689,742
Ensembl chrNW_004936712:1,688,093...1,689,816 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936524:3,085,959...3,102,461
Ensembl chrNW_004936524:3,085,500...3,102,466 		JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT|involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chrNW_004936488:6,247,329...6,277,494
Ensembl chrNW_004936488:6,247,296...6,277,506 		JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:15,879,324...15,900,544
Ensembl chrNW_004936485:15,879,327...15,900,544 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:2,227,305...2,257,725
Ensembl chrNW_004936558:2,227,253...2,257,722 		JBrowse link
G Vps33b VPS33B late endosome and lysosome associated NOT|involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chrNW_004936483:16,007,448...16,031,353
Ensembl chrNW_004936483:16,007,465...16,032,392 		JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B NOT|involved_in ISO (PMID:23217709) UniProt PMID:23217709 NCBI chrNW_004936495:11,043,813...11,064,113
Ensembl chrNW_004936495:11,045,429...11,064,206 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 NOT|involved_in ISO (PMID:20505359) UniProt PMID:20505359 NCBI chrNW_004936765:909,118...946,788
Ensembl chrNW_004936765:907,877...946,822 		JBrowse link
autophagosome membrane docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936495:155,709...195,860
Ensembl chrNW_004936495:154,593...195,917 		JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:3,300,941...3,357,595
Ensembl chrNW_004936558:3,300,941...3,357,941 		JBrowse link
G Calm1 calmodulin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:17,580,425...17,588,480
Ensembl chrNW_004936488:17,580,454...17,588,507 		JBrowse link
G Calm2 calmodulin 2 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chrNW_004936508:5,207,909...5,223,780
Ensembl chrNW_004936508:5,207,904...5,223,780 		JBrowse link
G Calm3 calmodulin 3 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chrNW_004936664:471,446...480,858
Ensembl chrNW_004936664:471,440...480,441 		JBrowse link
G Snap29 synaptosome associated protein 29 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:2,377,284...2,402,049
Ensembl chrNW_004936619:2,376,815...2,401,967 		JBrowse link
G Stx17 syntaxin 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:8,324,562...8,381,244
Ensembl chrNW_004936524:8,324,569...8,376,114 		JBrowse link
G Vamp8 vesicle associated membrane protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936712:1,688,126...1,689,742
Ensembl chrNW_004936712:1,688,093...1,689,816 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:3,532,985...3,648,009
Ensembl chrNW_004936490:3,532,985...3,647,967 		JBrowse link
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:3,968,216...3,980,821
Ensembl chrNW_004936474:3,968,506...3,980,815 		JBrowse link
G Gba1 glucosylceramidase beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23707074) Ensembl
ARUK-UCL		 PMID:23707074 GO_REF:0000107 NCBI chrNW_004936580:4,715,869...4,720,752
Ensembl chrNW_004936580:4,715,408...4,720,798 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004936528:1,845,372...1,964,908
Ensembl chrNW_004936528:1,869,527...1,964,183 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24098492) Ensembl
MGI		 PMID:24098492 GO_REF:0000107 NCBI chrNW_004936567:314,957...377,544
Ensembl chrNW_004936567:314,898...378,045 		JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:25365221) MGI PMID:25365221 NCBI chrNW_004936471:7,540,647...7,618,783 JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25365221) MGI
Ensembl		 PMID:25365221 GO_REF:0000107 NCBI chrNW_004936495:11,132,025...11,191,446
Ensembl chrNW_004936495:11,134,138...11,190,863 		JBrowse link
autophagosome-endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rubcnl rubicon like autophagy enhancer involved_in ISO (PMID:28306502) UniProt PMID:28306502 NCBI chrNW_004936857:839,418...870,961 JBrowse link
autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ARF like GTPase 8B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936577:4,430,939...4,475,186
Ensembl chrNW_004936577:4,430,898...4,475,212 		JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:3,968,216...3,980,821
Ensembl chrNW_004936474:3,968,506...3,980,815 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:11,955,334...11,967,338
Ensembl chrNW_004936501:11,955,184...11,967,436 		JBrowse link
G Diaph3 diaphanous related formin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:33036023) Ensembl
MGI		 PMID:33036023 GO_REF:0000107 NCBI chrNW_004936705:1,381,025...1,833,890
Ensembl chrNW_004936705:1,380,445...1,731,280 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936520:5,383,737...5,540,176
Ensembl chrNW_004936520:5,383,737...5,540,203 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:14,168,951...14,201,712
Ensembl chrNW_004936490:14,168,981...14,202,108 		JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:1,685,902...1,732,361
Ensembl chrNW_004936541:1,685,923...1,732,420 		JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in ISO (PMID:28306502) UniProt PMID:28306502 NCBI chrNW_004936857:839,418...870,961 JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:5,073,274...5,103,733
Ensembl chrNW_004936492:5,073,191...5,103,739 		JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:5,457,363...5,512,966
Ensembl chrNW_004936471:5,457,035...5,512,625 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936750:1,381,864...1,406,736
Ensembl chrNW_004936750:1,381,851...1,407,323 		JBrowse link
glycophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936742:1,000,029...1,007,885
Ensembl chrNW_004936742:999,771...1,007,885 		JBrowse link
G Atg2a autophagy related 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936599:4,417,810...4,437,639
Ensembl chrNW_004936599:4,417,900...4,437,178 		JBrowse link
G Atg2b autophagy related 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936604:583,391...641,217
Ensembl chrNW_004936604:584,480...641,183 		JBrowse link
G Atg3 autophagy related 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936536:232,343...257,949
Ensembl chrNW_004936536:232,192...257,954 		JBrowse link
G Gaa alpha glucosidase involved_in ISO (PMID:12739885) MGI PMID:12739885 NCBI chrNW_004936594:4,125,595...4,142,261 JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936902:364,158...372,888
Ensembl chrNW_004936902:362,282...373,459 		JBrowse link
G LOC101976670 ubiquitin-like protein ATG12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936673:2,861,475...2,862,529 JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936590:260,685...335,143
Ensembl chrNW_004936590:260,685...334,721 		JBrowse link
G Stbd1 starch binding domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936676:300,244...304,206
Ensembl chrNW_004936676:299,963...304,213 		JBrowse link
lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aup1 AUP1 lipid droplet regulating VLDL assembly factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936556:738,946...742,049
Ensembl chrNW_004936556:739,094...742,034 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:297,600...304,929
Ensembl chrNW_004936798:296,066...305,176 		JBrowse link
G Spart spartin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:30,467,975...30,525,880
Ensembl chrNW_004936472:30,467,964...30,504,624 		JBrowse link
mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl interactor 2 involved_in ISO (PMID:38081847) UniProt PMID:38081847 NCBI chrNW_004936631:30,109...101,748
Ensembl chrNW_004936631:30,199...98,511 		JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936562:2,493,823...2,676,868
Ensembl chrNW_004936562:2,493,774...2,676,912 		JBrowse link
G Arfip2 ARF interacting protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936842:526,467...531,278
Ensembl chrNW_004936842:524,182...530,540 		JBrowse link
G Arhgap26 Rho GTPase activating protein 26 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:11,106,030...11,531,854
Ensembl chrNW_004936504:11,108,092...11,531,861 		JBrowse link
G Atg13 autophagy related 13 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936562:2,424,398...2,473,103
Ensembl chrNW_004936562:2,423,001...2,473,232 		JBrowse link
G Atg14 autophagy related 14 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936495:155,709...195,860
Ensembl chrNW_004936495:154,593...195,917 		JBrowse link
G Atg4a autophagy related 4A cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936499:6,641,192...6,691,685
Ensembl chrNW_004936499:6,640,957...6,691,995 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936745:291,311...308,469
Ensembl chrNW_004936745:292,746...307,746 		JBrowse link
G Atg4c autophagy related 4C cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936692:439,475...532,633
Ensembl chrNW_004936692:439,280...532,657 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936659:823,318...830,642
Ensembl chrNW_004936659:823,172...830,521 		JBrowse link
G Atg7 autophagy related 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Bcl2l13 BCL2 like 13 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:31266807) MGI
Ensembl		 PMID:31266807 GO_REF:0000107 NCBI chrNW_004936807:601,759...678,531
Ensembl chrNW_004936807:601,730...676,966 		JBrowse link
G Becn1 beclin 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:17,518,100...17,531,126
Ensembl chrNW_004936490:17,517,751...17,531,151 		JBrowse link
G Becn2 beclin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936526:8,532,991...8,534,271
Ensembl chrNW_004936526:8,533,009...8,534,271 		JBrowse link
G Bnip3 BCL2 interacting protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:18,449,371...18,460,435
Ensembl chrNW_004936486:18,448,494...18,455,927 		JBrowse link
G Clec16a C-type lectin domain containing 16A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:9,089,478...9,264,563
Ensembl chrNW_004936530:9,089,476...9,264,592 		JBrowse link
G Ctsk cathepsin K involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004936580:1,022,762...1,038,020
Ensembl chrNW_004936580:1,022,762...1,034,984 		JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:10,746,687...10,769,304
Ensembl chrNW_004936495:10,745,923...10,773,199 		JBrowse link
G Fundc1 FUN14 domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:10,643,172...10,657,118
Ensembl chrNW_004936502:10,643,071...10,657,134 		JBrowse link
G Gba1 glucosylceramidase beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23707074) Ensembl
MGI		 PMID:23707074 GO_REF:0000107 NCBI chrNW_004936580:4,715,869...4,720,752
Ensembl chrNW_004936580:4,715,408...4,720,798 		JBrowse link
G LOC101977755 protein NipSnap homolog 3A involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936559:7,343,173...7,356,151 JBrowse link
G LOC106144638 protein NipSnap homolog 3A involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936559:7,318,148...7,328,410 JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004936689:429,907...1,080,226
Ensembl chrNW_004936689:430,293...1,079,838 		JBrowse link
G Nipsnap1 nipsnap homolog 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936657:3,504,940...3,517,654
Ensembl chrNW_004936657:3,504,913...3,517,708 		JBrowse link
G Nipsnap2 nipsnap homolog 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936543:7,928,250...7,957,436
Ensembl chrNW_004936543:7,928,217...7,969,914 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:99,335...137,833
Ensembl chrNW_004936762:99,293...137,874 		JBrowse link
G Phb2 prohibitin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936709:854,493...859,182
Ensembl chrNW_004936709:854,698...858,851 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in IEA
ISO		 Ensembl
RGD		 PMID:25154397 GO_REF:0000107 RGD:12904014 NCBI chrNW_004936474:6,574,471...6,589,478
Ensembl chrNW_004936474:6,573,623...6,589,478 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24949970) Ensembl
MGI		 PMID:24949970 GO_REF:0000107 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872 		JBrowse link
G Retreg1 reticulophagy regulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31446166) Ensembl
MGI		 PMID:31446166 GO_REF:0000107 NCBI chrNW_004936480:19,114,753...19,253,346
Ensembl chrNW_004936480:19,114,768...19,253,352 		JBrowse link
G Rimoc1 RAB7A interacting MON1-CCZ1 complex subunit 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936518:880,781...897,655
Ensembl chrNW_004936518:880,669...898,417 		JBrowse link
G Spata33 spermatogenesis associated 33 involved_in ISO (PMID:33087875) UniProt PMID:33087875 NCBI chrNW_004936641:360,941...366,496 JBrowse link
G Sqstm1 sequestosome 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936739:943,080...955,296
Ensembl chrNW_004936739:938,745...955,263 		JBrowse link
G Tafazzin tafazzin, phospholipid-lysophospholipid transacylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936809:1,160,265...1,168,956
Ensembl chrNW_004936809:1,160,247...1,171,097 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chrNW_004936606:4,518,525...4,540,109
Ensembl chrNW_004936606:4,518,584...4,540,114 		JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO (PMID:21855797) ParkinsonsUK-UCL PMID:21855797 NCBI chrNW_004936660:2,160,394...2,188,848
Ensembl chrNW_004936660:2,163,844...2,187,080 		JBrowse link
negative regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:757,500...778,416
Ensembl chrNW_004936721:758,181...778,053 		JBrowse link
G Lypla1 lysophospholipase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:937,918...971,315
Ensembl chrNW_004936496:936,763...971,710 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27994061) Ensembl
MGI		 PMID:27994061 GO_REF:0000107 NCBI chrNW_004936490:17,518,100...17,531,126
Ensembl chrNW_004936490:17,517,751...17,531,151 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23918802) Ensembl
MGI		 PMID:23918802 GO_REF:0000107 NCBI chrNW_004936727:1,648,451...1,663,294
Ensembl chrNW_004936727:1,648,448...1,663,455 		JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936743:1,871,808...1,917,370
Ensembl chrNW_004936743:1,871,664...1,903,245 		JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936663:1,576,311...1,637,363
Ensembl chrNW_004936663:1,576,269...1,623,296 		JBrowse link
G LOC101959716 transmembrane protein 39A-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936531:7,196,458...7,198,575 JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936607:628,469...761,117
Ensembl chrNW_004936607:626,991...761,123 		JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23695157) Ensembl
TreeGrafter
MGI		 PMID:23695157 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936714:1,792,893...1,870,338
Ensembl chrNW_004936714:1,792,845...1,870,389 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:11,998,064...11,999,431
Ensembl chrNW_004936501:11,997,834...11,999,709 		JBrowse link
G Phf23 PHD finger protein 23 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936595:528,832...533,212
Ensembl chrNW_004936595:528,516...533,235 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,574,471...6,589,478
Ensembl chrNW_004936474:6,573,623...6,589,478 		JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936494:5,410,219...5,501,687
Ensembl chrNW_004936494:5,410,269...5,501,498 		JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936872:294,116...313,893
Ensembl chrNW_004936872:294,066...313,293 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936741:1,838,974...1,848,742
Ensembl chrNW_004936741:1,838,834...1,844,459 		JBrowse link
G Tmem39a transmembrane protein 39A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936536:6,376,539...6,406,314 JBrowse link
negative regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:9,089,478...9,264,563
Ensembl chrNW_004936530:9,089,476...9,264,592 		JBrowse link
G LOC101959716 transmembrane protein 39A-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936531:7,196,458...7,198,575 JBrowse link
G Phf23 PHD finger protein 23 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936595:528,832...533,212
Ensembl chrNW_004936595:528,516...533,235 		JBrowse link
G Rubcn rubicon autophagy regulator involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936784:370,173...438,263
Ensembl chrNW_004936784:383,899...438,275 		JBrowse link
G Tmem39a transmembrane protein 39A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936536:6,376,539...6,406,314 JBrowse link
G Ubqln4 ubiquilin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:5,299,864...5,316,583
Ensembl chrNW_004936580:5,301,389...5,315,756 		JBrowse link
negative regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20705711) Ensembl
MGI		 PMID:20705711 GO_REF:0000107 NCBI chrNW_004936492:5,042,353...5,049,216
Ensembl chrNW_004936492:5,042,330...5,049,311 		JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936607:628,469...761,117
Ensembl chrNW_004936607:626,991...761,123 		JBrowse link
G Lzts1 leucine zipper tumor suppressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:4,330,878...4,384,883
Ensembl chrNW_004936555:4,330,787...4,384,932 		JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25327288)
(PMID:16714284), (PMID:23274896)		 MGI
TreeGrafter
Ensembl		 PMID:16714284 PMID:23274896 PMID:25327288 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:158,376...282,310
Ensembl chrNW_004936474:157,590...282,342 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17468177) Ensembl
MGI		 PMID:17468177 GO_REF:0000107 NCBI chrNW_004936550:2,983,172...3,032,222
Ensembl chrNW_004936550:2,980,442...3,032,229 		JBrowse link
G Nrbp2 nuclear receptor binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:8,327,326...8,333,573
Ensembl chrNW_004936470:8,327,258...8,332,200 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,574,471...6,589,478
Ensembl chrNW_004936474:6,573,623...6,589,478 		JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24797518) Ensembl
MGI		 PMID:24797518 GO_REF:0000107 NCBI chrNW_004936538:4,504,039...4,512,785
Ensembl chrNW_004936538:4,500,478...4,512,761 		JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:8,975,818...9,013,684
Ensembl chrNW_004936481:8,975,790...9,013,723 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936741:1,838,974...1,848,742
Ensembl chrNW_004936741:1,838,834...1,844,459 		JBrowse link
G Tsc1 TSC complex subunit 1 involved_in ISO PMID:23435171 ParkinsonsUK-UCL PMID:23435171 RGD:10448950 NCBI chrNW_004936487:19,331,183...19,386,841
Ensembl chrNW_004936487:19,331,194...19,386,892 		JBrowse link
G Tsc2 TSC complex subunit 2 ISO RGD PMID:24599401 RGD:11568679 NCBI chrNW_004936694:1,958,152...1,993,373
Ensembl chrNW_004936694:1,958,154...1,993,363 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:3,194,842...3,228,701
Ensembl chrNW_004936594:3,194,482...3,228,748 		JBrowse link
negative regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004936530:9,089,478...9,264,563
Ensembl chrNW_004936530:9,089,476...9,264,592 		JBrowse link
G Fbxl4 F-box and leucine rich repeat protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936651:530,296...609,443
Ensembl chrNW_004936651:530,197...609,417 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,574,471...6,589,478
Ensembl chrNW_004936474:6,573,623...6,589,478 		JBrowse link
G Pptc7 protein phosphatase targeting COQ7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:3,491,225...3,531,886
Ensembl chrNW_004936558:3,490,808...3,532,345 		JBrowse link
G Rnf41 ring finger protein 41 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24949970) Ensembl
MGI		 PMID:24949970 GO_REF:0000107 NCBI chrNW_004936646:605,302...630,645
Ensembl chrNW_004936646:605,302...631,022 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chrNW_004936606:4,518,525...4,540,109
Ensembl chrNW_004936606:4,518,584...4,540,114 		JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
G Tspo translocator protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936718:992,301...995,172
Ensembl chrNW_004936718:992,301...995,995 		JBrowse link
G Usp30 ubiquitin specific peptidase 30 ISO RGD PMID:24896179 RGD:13208875 NCBI chrNW_004936769:874,188...902,690
Ensembl chrNW_004936769:826,615...904,034 		JBrowse link
negative regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htra2 HtrA serine peptidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936556:741,718...746,016
Ensembl chrNW_004936556:741,718...749,090 		JBrowse link
G Vps13c vacuolar protein sorting 13 homolog C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:22,661,899...22,842,144
Ensembl chrNW_004936471:22,661,447...22,842,150 		JBrowse link
nucleophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg3 autophagy related 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936536:232,343...257,949
Ensembl chrNW_004936536:232,192...257,954 		JBrowse link
pexophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acbd5 acyl-CoA binding domain containing 5 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936484:2,224,308...2,268,302
Ensembl chrNW_004936484:2,225,659...2,271,668 		JBrowse link
G Atm ATM serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:359,134...534,672
Ensembl chrNW_004936551:359,362...532,211 		JBrowse link
G Pex2 peroxisomal biogenesis factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936702:1,573,616...1,626,323
Ensembl chrNW_004936702:1,573,650...1,591,004 		JBrowse link
G Pex5 peroxisomal biogenesis factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936709:587,296...606,085
Ensembl chrNW_004936709:587,295...606,247 		JBrowse link
G Pjvk pejvakin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:7,670,557...7,677,480
Ensembl chrNW_004936509:7,670,325...7,677,581 		JBrowse link
G Sqstm1 sequestosome 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936739:943,080...955,296
Ensembl chrNW_004936739:938,745...955,263 		JBrowse link
piecemeal microautophagy of the nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936742:1,000,029...1,007,885
Ensembl chrNW_004936742:999,771...1,007,885 		JBrowse link
G Atg13 autophagy related 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936562:2,424,398...2,473,103
Ensembl chrNW_004936562:2,423,001...2,473,232 		JBrowse link
G Atg2a autophagy related 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936599:4,417,810...4,437,639
Ensembl chrNW_004936599:4,417,900...4,437,178 		JBrowse link
G Atg2b autophagy related 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936604:583,391...641,217
Ensembl chrNW_004936604:584,480...641,183 		JBrowse link
G Atg4a autophagy related 4A cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936499:6,641,192...6,691,685
Ensembl chrNW_004936499:6,640,957...6,691,995 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936745:291,311...308,469
Ensembl chrNW_004936745:292,746...307,746 		JBrowse link
G Atg4c autophagy related 4C cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936692:439,475...532,633
Ensembl chrNW_004936692:439,280...532,657 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936659:823,318...830,642
Ensembl chrNW_004936659:823,172...830,521 		JBrowse link
G Atg5 autophagy related 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936564:2,759,085...2,885,394
Ensembl chrNW_004936564:2,758,598...2,885,420 		JBrowse link
G Atg7 autophagy related 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Atg9a autophagy related 9A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936569:1,635,958...1,645,600
Ensembl chrNW_004936569:1,635,836...1,645,815 		JBrowse link
G Atg9b autophagy related 9B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936527:6,445,824...6,453,582
Ensembl chrNW_004936527:6,446,667...6,453,511 		JBrowse link
G LOC101976670 ubiquitin-like protein ATG12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936673:2,861,475...2,862,529 JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936590:260,685...335,143
Ensembl chrNW_004936590:260,685...334,721 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936559:684,536...792,829
Ensembl chrNW_004936559:690,397...792,835 		JBrowse link
G Snx7 sorting nexin 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936537:940,282...1,022,903
Ensembl chrNW_004936537:940,724...1,022,887 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936660:2,160,394...2,188,848
Ensembl chrNW_004936660:2,163,844...2,187,080 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936821:1,051,247...1,162,500
Ensembl chrNW_004936821:1,051,053...1,162,735 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:33,807,825...33,814,520
Ensembl chrNW_004936471:33,807,010...33,814,573 		JBrowse link
positive regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag3 BAG cochaperone 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:8,985,871...9,007,461
Ensembl chrNW_004936486:8,985,761...9,007,502 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISO (PMID:22017874) UniProt PMID:22017874 NCBI chrNW_004936485:17,966,993...18,021,191 JBrowse link
G Hspb8 heat shock protein family B (small) member 8 involved_in ISO (PMID:18006506) ARUK-UCL PMID:18006506 NCBI chrNW_004936668:1,496,600...1,505,650 JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,767,526...3,775,416
Ensembl chrNW_004936599:3,766,242...3,776,128 		JBrowse link
G LOC101966195 huntingtin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:20,443,101...20,577,167
Ensembl chrNW_004936477:20,443,113...20,577,071
Ensembl chrNW_004936477:20,443,113...20,577,071 		JBrowse link
G LOC101977244 zinc finger DHHC-type palmitoyltransferase 19 involved_in ISO (PMID:37802024) UniProt PMID:37802024 NCBI chrNW_004936784:748,381...833,841 JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:4,417,810...4,437,639
Ensembl chrNW_004936599:4,417,900...4,437,178 		JBrowse link
G Atg7 autophagy related 7 ISO RGD PMID:33372336 RGD:407571673 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Becn1 beclin 1 ISO RGD PMID:25561470 RGD:11561937 NCBI chrNW_004936490:17,518,100...17,531,126
Ensembl chrNW_004936490:17,517,751...17,531,151 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936704:653,434...736,660
Ensembl chrNW_004936704:653,403...739,151 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:15,181,009...15,217,952
Ensembl chrNW_004936487:15,180,811...15,217,406 		JBrowse link
G Moap1 modulator of apoptosis 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936733:1,111,256...1,113,651
Ensembl chrNW_004936733:1,111,958...1,113,010 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936520:5,383,737...5,540,176
Ensembl chrNW_004936520:5,383,737...5,540,203 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:14,168,951...14,201,712
Ensembl chrNW_004936490:14,168,981...14,202,108 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,737,088...1,748,056
Ensembl chrNW_004936646:1,737,034...1,748,057 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:40,642,240...40,727,831
Ensembl chrNW_004936469:40,641,928...40,727,837 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936650:1,944,291...2,054,847
Ensembl chrNW_004936650:1,944,346...2,056,665 		JBrowse link
G Ralb RAS like proto-oncogene B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:50,237,804...50,279,483
Ensembl chrNW_004936469:50,236,409...50,279,583 		JBrowse link
G Sh3glb1 SH3 domain containing GRB2 like, endophilin B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936732:2,066,848...2,097,947
Ensembl chrNW_004936732:2,067,204...2,097,631 		JBrowse link
G Snx18 sorting nexin 18 involved_in ISO (PMID:29437695) UniProt PMID:29437695 NCBI chrNW_004936480:13,108,510...13,137,550 JBrowse link
G Snx30 sorting nexin family member 30 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:684,536...792,829
Ensembl chrNW_004936559:690,397...792,835 		JBrowse link
G Snx4 sorting nexin 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004937215:127,074...137,281 JBrowse link
G Snx7 sorting nexin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:940,282...1,022,903
Ensembl chrNW_004936537:940,724...1,022,887 		JBrowse link
G Trim32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:5,606,690...5,619,856
Ensembl chrNW_004936487:5,606,693...5,619,856 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO RGD PMID:23448468 RGD:13208863 NCBI chrNW_004936660:2,160,394...2,188,848
Ensembl chrNW_004936660:2,163,844...2,187,080 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:975,113...981,149
Ensembl chrNW_004936721:975,104...981,731 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:7,782,836...7,812,142
Ensembl chrNW_004936541:7,783,322...7,812,054 		JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:5,985,407...5,987,453
Ensembl chrNW_004936504:5,985,960...5,987,210 		JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in ISO (PMID:25771791) GO_Central PMID:25771791 NCBI chrNW_004936490:12,576,752...12,609,273 JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004936530:9,089,478...9,264,563
Ensembl chrNW_004936530:9,089,476...9,264,592 		JBrowse link
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936596:3,938...81,226
Ensembl chrNW_004936596:3,720...81,257 		JBrowse link
G LOC101960300 calcium-binding and coiled-coil domain-containing protein 2-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936570:22,898...25,121 JBrowse link
G LOC101972667 immunity related GTPase M involved_in ISO (PMID:16888103) UniProt PMID:16888103 NCBI chrNW_004936504:4,055,091...4,056,089 JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936741:1,838,974...1,848,742
Ensembl chrNW_004936741:1,838,834...1,844,459 		JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:5,073,274...5,103,733
Ensembl chrNW_004936492:5,073,191...5,103,739 		JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl1 ELAV like RNA binding protein 1 ISO RGD PMID:33372336 RGD:407571673 NCBI chrNW_004936588:4,931,665...4,959,032
Ensembl chrNW_004936588:4,927,950...4,959,064 		JBrowse link
positive regulation of autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Znrf1 zinc and ring finger 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:23,814,200...23,918,871
Ensembl chrNW_004936475:23,814,194...23,916,530 		JBrowse link
G Znrf2 zinc and ring finger 2 involved_in ISO (PMID:38360932) FlyBase PMID:38360932 NCBI chrNW_004936478:6,589,440...6,681,315 JBrowse link
positive regulation of lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:5,985,407...5,987,453
Ensembl chrNW_004936504:5,985,960...5,987,210 		JBrowse link
G LOC101966195 huntingtin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:20,443,101...20,577,167
Ensembl chrNW_004936477:20,443,113...20,577,071
Ensembl chrNW_004936477:20,443,113...20,577,071 		JBrowse link
G LOC101967158 serine palmitoyltransferase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25332431) MGI
Ensembl		 PMID:25332431 GO_REF:0000107 NCBI chrNW_004936488:6,313,189...6,404,425
Ensembl chrNW_004936488:6,289,833...6,296,849
Ensembl chrNW_004936488:6,289,833...6,296,849 		JBrowse link
G Sesn2 sestrin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22958918) Ensembl
MGI		 PMID:22958918 GO_REF:0000107 NCBI chrNW_004936474:12,416,652...12,436,799
Ensembl chrNW_004936474:12,416,652...12,436,814 		JBrowse link
G Sptlc1 serine palmitoyltransferase long chain base subunit 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25332431) MGI
Ensembl		 PMID:25332431 GO_REF:0000107 NCBI chrNW_004936796:886,946...948,254
Ensembl chrNW_004936796:886,922...948,254 		JBrowse link
positive regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19273585) MGI
Ensembl		 PMID:19273585 GO_REF:0000107 NCBI chrNW_004936486:18,449,371...18,460,435
Ensembl chrNW_004936486:18,448,494...18,455,927 		JBrowse link
G Bnip3l BCL2 interacting protein 3 like acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19273585) MGI
Ensembl		 PMID:19273585 GO_REF:0000107 NCBI chrNW_004936757:499,485...523,494
Ensembl chrNW_004936757:499,147...523,541 		JBrowse link
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936611:2,074,655...2,101,846
Ensembl chrNW_004936611:2,078,716...2,101,881 		JBrowse link
G Dcn decorin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23798385) MGI
Ensembl		 PMID:23798385 GO_REF:0000107 NCBI chrNW_004936507:7,887,259...7,923,055
Ensembl chrNW_004936507:7,884,654...7,922,961 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20453062) MGI
Ensembl		 PMID:20453062 GO_REF:0000107 NCBI chrNW_004936625:761,013...819,826
Ensembl chrNW_004936625:738,124...821,566 		JBrowse link
G Gnai3 G protein subunit alpha i3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936704:1,031,476...1,075,662
Ensembl chrNW_004936704:1,032,708...1,074,384 		JBrowse link
G Gpsm1 G protein signaling modulator 1 involved_in ISO (PMID:12642577) UniProt PMID:12642577 NCBI chrNW_004936669:1,442,550...1,469,563
Ensembl chrNW_004936669:1,440,902...1,463,944 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19273585) Ensembl
MGI		 PMID:19273585 GO_REF:0000107 NCBI chrNW_004936495:5,770,988...5,816,157
Ensembl chrNW_004936495:5,770,669...5,816,157 		JBrowse link
G Hmox1 heme oxygenase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20705711) Ensembl
MGI		 PMID:20705711 GO_REF:0000107 NCBI chrNW_004936492:5,042,353...5,049,216
Ensembl chrNW_004936492:5,042,330...5,049,311 		JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma involved_in ISO (PMID:23778976) ParkinsonsUK-UCL PMID:23778976 NCBI chrNW_004936809:1,280,254...1,306,964
Ensembl chrNW_004936809:1,257,654...1,301,813 		JBrowse link
G Kdr kinase insert domain receptor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23798385) MGI
Ensembl		 PMID:23798385 GO_REF:0000107 NCBI chrNW_004936482:17,537,697...17,581,320
Ensembl chrNW_004936482:17,538,864...17,581,002 		JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936515:8,039,887...8,125,006
Ensembl chrNW_004936515:8,043,436...8,063,964 		JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 involved_in ISO (PMID:23778976) ParkinsonsUK-UCL PMID:23778976 NCBI chrNW_004936510:1,772,971...1,836,075
Ensembl chrNW_004936510:1,772,971...1,837,765 		JBrowse link
G Pafah1b2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:2,390,904...2,417,596
Ensembl chrNW_004936542:2,390,513...2,414,882 		JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17476689) Ensembl
MGI		 PMID:17476689 GO_REF:0000107 NCBI chrNW_004936721:839,876...844,488
Ensembl chrNW_004936721:839,874...844,488 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,574,471...6,589,478
Ensembl chrNW_004936474:6,573,623...6,589,478 		JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in ISO (PMID:23357852) UniProt PMID:23357852 NCBI chrNW_004936670:2,315,930...2,338,489
Ensembl chrNW_004936670:2,315,442...2,338,509 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936569:654,904...676,012
Ensembl chrNW_004936569:657,071...675,292 		JBrowse link
G Scoc short coiled-coil protein involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004936535:7,403,767...7,412,903 JBrowse link
G Sesn1 sestrin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936564:5,187,152...5,291,201
Ensembl chrNW_004936564:5,187,005...5,291,498 		JBrowse link
G Sesn2 sestrin 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:12,416,652...12,436,799
Ensembl chrNW_004936474:12,416,652...12,436,814 		JBrowse link
G Sesn3 sestrin 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936700:2,429,535...2,491,752
Ensembl chrNW_004936700:2,429,446...2,488,127 		JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936531:8,555,966...8,562,829
Ensembl chrNW_004936531:8,555,637...8,562,885 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:2,280,390...2,308,085
Ensembl chrNW_004936661:2,280,285...2,308,780 		JBrowse link
G Tbk1 TANK binding kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:2,763,755...2,809,229
Ensembl chrNW_004936545:2,763,596...2,809,709 		JBrowse link
G Trim13 tripartite motif containing 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936565:2,976,681...2,989,036
Ensembl chrNW_004936565:2,976,729...2,989,088 		JBrowse link
G Tsc1 TSC complex subunit 1 ISO RGD PMID:23435171 RGD:10448950 NCBI chrNW_004936487:19,331,183...19,386,841
Ensembl chrNW_004936487:19,331,194...19,386,892 		JBrowse link
G Tsc2 TSC complex subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20453062) Ensembl
MGI		 PMID:20453062 GO_REF:0000107 NCBI chrNW_004936694:1,958,152...1,993,373
Ensembl chrNW_004936694:1,958,154...1,993,363 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936613:2,793,706...2,862,984
Ensembl chrNW_004936613:2,794,732...2,865,913 		JBrowse link
G Wdr24 WD repeat domain 24 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936501:321,877...326,984
Ensembl chrNW_004936501:321,924...327,253 		JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:2,493,823...2,676,868
Ensembl chrNW_004936562:2,493,774...2,676,912 		JBrowse link
G Atg7 autophagy related 7 ISO RGD PMID:37042059 RGD:407532700 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Cers1 ceramide synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:2,442,978...2,467,184
Ensembl chrNW_004936596:2,442,991...2,467,184 		JBrowse link
G Dele1 DAP3 binding cell death enhancer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:12,247,584...12,259,962
Ensembl chrNW_004936504:12,245,776...12,259,851 		JBrowse link
G Eif2ak1 eukaryotic translation initiation factor 2 alpha kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936750:389,913...430,783
Ensembl chrNW_004936750:389,845...432,460 		JBrowse link
G Fbxo7 F-box protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:7,261,442...7,276,779
Ensembl chrNW_004936492:7,261,009...7,276,943 		JBrowse link
G LOC101966195 huntingtin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:20,443,101...20,577,167
Ensembl chrNW_004936477:20,443,113...20,577,071
Ensembl chrNW_004936477:20,443,113...20,577,071 		JBrowse link
G LOC101972667 immunity related GTPase M involved_in ISO (PMID:21102437), (PMID:32939830)
(PMID:33510463)		 UniProt PMID:21102437 PMID:32939830 PMID:33510463 NCBI chrNW_004936504:4,055,091...4,056,089 JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:3,708,069...3,742,845
Ensembl chrNW_004936475:3,713,362...3,745,982 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO
IEA		 RGD
Ensembl		 PMID:28608965 GO_REF:0000107 RGD:13432560 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872 		JBrowse link
G Slc25a4 solute carrier family 25 member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936554:4,130,461...4,135,046
Ensembl chrNW_004936554:4,130,459...4,135,044 		JBrowse link
G Slc25a5 solute carrier family 25 member 5 involved_in ISO (PMID:31618756) UniProt PMID:31618756 NCBI chrNW_004936479:10,432,172...10,435,154 JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO PMID:29934347 UniProt PMID:29934347 RGD:405650300 NCBI chrNW_004936501:328,767...330,963
Ensembl chrNW_004936501:326,451...330,983 		JBrowse link
G Ube2a ubiquitin conjugating enzyme E2 A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:10,330,666...10,340,268
Ensembl chrNW_004936479:10,330,632...10,340,367 		JBrowse link
G Vps13d vacuolar protein sorting 13 homolog D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:955,081...1,194,200
Ensembl chrNW_004936474:955,040...1,195,859 		JBrowse link
positive regulation of reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:13,345,443...13,355,841
Ensembl chrNW_004936490:13,345,443...13,355,841 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:15,516,348...15,526,380
Ensembl chrNW_004936485:15,516,302...15,526,376 		JBrowse link
G Ufl1 UFM1 specific ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936699:1,131,385...1,163,310
Ensembl chrNW_004936699:1,129,344...1,163,530 		JBrowse link
positive regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5if1 ATP synthase inhibitory factor subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,396,416...12,399,760
Ensembl chrNW_004936474:12,396,023...12,401,023 		JBrowse link
G Cdc37 cell division cycle 37, HSP90 cochaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:711,165...721,207
Ensembl chrNW_004936659:711,117...721,260 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23707074) ARUK-UCL
Ensembl		 PMID:23707074 GO_REF:0000107 NCBI chrNW_004936580:4,715,869...4,720,752
Ensembl chrNW_004936580:4,715,408...4,720,798 		JBrowse link
G Hdac6 histone deacetylase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:757,500...778,416
Ensembl chrNW_004936721:758,181...778,053 		JBrowse link
G Hk2 hexokinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936556:1,054,143...1,113,425
Ensembl chrNW_004936556:1,054,021...1,113,450 		JBrowse link
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936751:478,978...622,818
Ensembl chrNW_004936751:478,300...622,820 		JBrowse link
G Mul1 mitochondrial E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,479,640...6,486,080
Ensembl chrNW_004936474:6,477,504...6,486,660 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,574,471...6,589,478
Ensembl chrNW_004936474:6,573,623...6,589,478 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872 		JBrowse link
G Tomm7 translocase of outer mitochondrial membrane 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:30,787...36,952
Ensembl chrNW_004936478:30,666...37,062 		JBrowse link
G Vdac1 voltage dependent anion channel 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936647:1,220,075...1,249,579
Ensembl chrNW_004936647:1,230,450...1,249,814 		JBrowse link
positive regulation of xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101972667 immunity related GTPase M involved_in ISO (PMID:25891078) UniProt PMID:25891078 NCBI chrNW_004936504:4,055,091...4,056,089 JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:15,181,009...15,217,952
Ensembl chrNW_004936487:15,180,811...15,217,406 		JBrowse link
G Mapk3 mitogen-activated protein kinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chrNW_004936501:12,342,670...12,390,650
Ensembl chrNW_004936501:12,384,804...12,392,180 		JBrowse link
G Nod1 nucleotide binding oligomerization domain containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chrNW_004936478:6,717,354...6,768,293
Ensembl chrNW_004936478:6,715,245...6,768,372 		JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chrNW_004936475:3,708,069...3,742,845
Ensembl chrNW_004936475:3,713,362...3,745,982 		JBrowse link
G Optn optineurin involved_in ISO (PMID:21617041) ParkinsonsUK-UCL PMID:21617041 NCBI chrNW_004937104:73,340...113,179 JBrowse link
G Ripk2 receptor interacting serine/threonine kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chrNW_004936544:3,606,925...3,653,248
Ensembl chrNW_004936544:3,606,879...3,655,532 		JBrowse link
G Rnf31 ring finger protein 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:385,972...397,718
Ensembl chrNW_004936722:385,971...398,030 		JBrowse link
G Tbk1 TANK binding kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:2,763,755...2,809,229
Ensembl chrNW_004936545:2,763,596...2,809,709 		JBrowse link
G Tlr2 toll like receptor 2 acts_upstream_of_or_within ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004936576:522,234...531,660
Ensembl chrNW_004936576:527,434...529,788 		JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004936525:3,973,574...4,010,442
Ensembl chrNW_004936525:3,972,558...4,010,514 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) MGI PMID:23918802 NCBI chrNW_004936564:2,759,085...2,885,394
Ensembl chrNW_004936564:2,758,598...2,885,420 		JBrowse link
G LOC101972667 immunity related GTPase M involved_in ISO (PMID:28389568) UniProt PMID:28389568 NCBI chrNW_004936504:4,055,091...4,056,089 JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004936765:909,118...946,788
Ensembl chrNW_004936765:907,877...946,822 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip2 ARF interacting protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936842:526,467...531,278
Ensembl chrNW_004936842:524,182...530,540 		JBrowse link
G Atg13 autophagy related 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936562:2,424,398...2,473,103
Ensembl chrNW_004936562:2,423,001...2,473,232 		JBrowse link
G Atg16l1 autophagy related 16 like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24954904) Ensembl
MGI		 PMID:24954904 GO_REF:0000107 NCBI chrNW_004936525:3,973,574...4,010,442
Ensembl chrNW_004936525:3,972,558...4,010,514 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936745:291,311...308,469
Ensembl chrNW_004936745:292,746...307,746 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:823,318...830,642
Ensembl chrNW_004936659:823,172...830,521 		JBrowse link
G Atg9a autophagy related 9A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936569:1,635,958...1,645,600
Ensembl chrNW_004936569:1,635,836...1,645,815 		JBrowse link
G Atg9b autophagy related 9B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936527:6,445,824...6,453,582
Ensembl chrNW_004936527:6,446,667...6,453,511 		JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004936689:429,907...1,080,226
Ensembl chrNW_004936689:430,293...1,079,838 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23455425) MGI
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chrNW_004936474:767,754...795,258
Ensembl chrNW_004936474:767,671...796,556 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23455425) MGI
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chrNW_004936621:172,727...206,803
Ensembl chrNW_004936621:175,387...206,662 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24098492) Ensembl
MGI		 PMID:24098492 GO_REF:0000107 NCBI chrNW_004936517:4,009,938...4,145,518
Ensembl chrNW_004936517:4,033,247...4,145,422 		JBrowse link
G Stx17 syntaxin 17 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23455425) MGI
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chrNW_004936524:8,324,562...8,381,244
Ensembl chrNW_004936524:8,324,569...8,376,114 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24954904) Ensembl
MGI		 PMID:24954904 GO_REF:0000107 NCBI chrNW_004936765:909,118...946,788
Ensembl chrNW_004936765:907,877...946,822 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936611:2,074,655...2,101,846
Ensembl chrNW_004936611:2,078,716...2,101,881 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180 		JBrowse link
G Efnb1 ephrin B1 involved_in
acts_upstream_of_positive_effect		 IEA
ISO		 (PMID:33280498) Ensembl
UniProt		 PMID:33280498 GO_REF:0000107 NCBI chrNW_004936777:434,729...447,778
Ensembl chrNW_004936777:434,692...447,780 		JBrowse link
G Ephb2 EPH receptor B2 involved_in
acts_upstream_of_positive_effect		 IEA
ISO		 (PMID:33280498) Ensembl
UniProt		 PMID:33280498 GO_REF:0000107 NCBI chrNW_004936474:8,109,800...8,203,106
Ensembl chrNW_004936474:8,109,031...8,203,106 		JBrowse link
G Ift20 intraflagellar transport 20 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chrNW_004936538:4,484,484...4,491,688 JBrowse link
G Ift88 intraflagellar transport 88 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chrNW_004936720:1,041,216...1,168,725
Ensembl chrNW_004936720:1,041,211...1,168,748 		JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937211:67,199...92,204
Ensembl chrNW_004937211:55,221...92,040 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:158,376...282,310
Ensembl chrNW_004936474:157,590...282,342 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936950:242,071...323,204
Ensembl chrNW_004936950:242,522...320,078 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,317,258...3,324,208
Ensembl chrNW_004936599:3,317,258...3,324,213 		JBrowse link
G Rnf186 ring finger protein 186 acts_upstream_of_positive_effect ISO (PMID:33280498) UniProt PMID:33280498 NCBI chrNW_004936474:5,947,077...5,947,772 JBrowse link
G Rnf5 ring finger protein 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23093945) Ensembl
MGI		 PMID:23093945 GO_REF:0000107 NCBI chrNW_004936727:1,422,207...1,424,808
Ensembl chrNW_004936727:1,422,207...1,424,739 		JBrowse link
G Tbc1d14 TBC1 domain family member 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:18,761,034...18,864,578
Ensembl chrNW_004936477:18,761,477...18,859,988 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936819:530,833...534,185
Ensembl chrNW_004936819:532,037...533,920 		JBrowse link
regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936742:1,000,029...1,007,885
Ensembl chrNW_004936742:999,771...1,007,885 		JBrowse link
G Atg5 autophagy related 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:2,759,085...2,885,394
Ensembl chrNW_004936564:2,758,598...2,885,420 		JBrowse link
G Clec16a C-type lectin domain containing 16A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936530:9,089,478...9,264,563
Ensembl chrNW_004936530:9,089,476...9,264,592 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:11,955,334...11,967,338
Ensembl chrNW_004936501:11,955,184...11,967,436 		JBrowse link
G LOC101976670 ubiquitin-like protein ATG12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936673:2,861,475...2,862,529 JBrowse link
G Tbc1d25 TBC1 domain family member 25 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936721:524,398...536,918
Ensembl chrNW_004936721:524,247...537,363 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936750:756,602...781,422
Ensembl chrNW_004936750:756,072...781,549 		JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:22186024 GO_REF:0000107 GO_REF:0000118 RGD:13442482 NCBI chrNW_004936474:3,968,216...3,980,821
Ensembl chrNW_004936474:3,968,506...3,980,815 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:11,955,334...11,967,338
Ensembl chrNW_004936501:11,955,184...11,967,436 		JBrowse link
G Dnajc16 DnaJ heat shock protein family (Hsp40) member C16 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:3,201,773...3,241,939
Ensembl chrNW_004936474:3,201,755...3,243,093 		JBrowse link
regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:155,709...195,860
Ensembl chrNW_004936495:154,593...195,917 		JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:3,968,216...3,980,821
Ensembl chrNW_004936474:3,968,506...3,980,815 		JBrowse link
G Atp6v0a1 ATPase H+ transporting V0 subunit a1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:17,235,661...17,296,589
Ensembl chrNW_004936490:17,235,661...17,296,633 		JBrowse link
G Becn1 beclin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:17,518,100...17,531,126
Ensembl chrNW_004936490:17,517,751...17,531,151 		JBrowse link
G Hdac6 histone deacetylase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:757,500...778,416
Ensembl chrNW_004936721:758,181...778,053 		JBrowse link
G Mtmr8 myotubularin related protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936635:3,336,218...3,415,998
Ensembl chrNW_004936635:3,336,148...3,415,166 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936517:4,009,938...4,145,518
Ensembl chrNW_004936517:4,033,247...4,145,422 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:4,162,276...4,232,471
Ensembl chrNW_004936529:4,162,112...4,232,510 		JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:4,872,360...4,939,873
Ensembl chrNW_004936522:4,875,046...4,939,879 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936828:543,651...588,673
Ensembl chrNW_004936828:542,407...588,679 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936819:530,833...534,185
Ensembl chrNW_004936819:532,037...533,920 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936660:2,160,394...2,188,848
Ensembl chrNW_004936660:2,163,844...2,187,080 		JBrowse link
regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy10 adenylate cyclase 10 ISO RGD PMID:31172217 RGD:329403053 NCBI chrNW_004936481:18,274,158...18,330,136
Ensembl chrNW_004936481:18,274,154...18,330,173 		JBrowse link
G Bnip3l BCL2 interacting protein 3 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936757:499,485...523,494
Ensembl chrNW_004936757:499,147...523,541 		JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004936475:10,030,408...10,073,576
Ensembl chrNW_004936475:10,033,717...10,075,511 		JBrowse link
G Cttn cortactin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:481,234...503,857
Ensembl chrNW_004936599:481,243...501,743 		JBrowse link
G Dnm1l dynamin 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936607:3,576,357...3,632,423
Ensembl chrNW_004936607:3,576,392...3,632,554 		JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936689:2,261,163...2,449,951
Ensembl chrNW_004936689:2,259,477...2,344,764 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:2,728,089...2,735,718
Ensembl chrNW_004936596:2,728,114...2,735,317 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004936631:3,909,046...3,915,939
Ensembl chrNW_004936631:3,911,693...3,915,560 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:266,462...277,256
Ensembl chrNW_004936706:269,126...277,256 		JBrowse link
G Parl presenilin associated rhomboid like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:5,945,765...5,992,972
Ensembl chrNW_004936578:5,945,635...5,993,143 		JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936741:1,408,669...1,419,717
Ensembl chrNW_004936741:1,406,521...1,419,776 		JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004936492:115,923...174,614
Ensembl chrNW_004936492:115,821...174,775 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004936594:3,194,842...3,228,701
Ensembl chrNW_004936594:3,194,482...3,228,748 		JBrowse link
G Vdac1 voltage dependent anion channel 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936647:1,220,075...1,249,579
Ensembl chrNW_004936647:1,230,450...1,249,814 		JBrowse link
reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936599:4,417,810...4,437,639
Ensembl chrNW_004936599:4,417,900...4,437,178 		JBrowse link
G Atg2b autophagy related 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936604:583,391...641,217
Ensembl chrNW_004936604:584,480...641,183 		JBrowse link
G Atg9a autophagy related 9A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936569:1,635,958...1,645,600
Ensembl chrNW_004936569:1,635,836...1,645,815 		JBrowse link
G Atg9b autophagy related 9B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936527:6,445,824...6,453,582
Ensembl chrNW_004936527:6,446,667...6,453,511 		JBrowse link
G Bnip3 BCL2 interacting protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:18,449,371...18,460,435
Ensembl chrNW_004936486:18,448,494...18,455,927 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:15,516,348...15,526,380
Ensembl chrNW_004936485:15,516,302...15,526,376 		JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31006538) Ensembl
TreeGrafter
MGI		 PMID:31006538 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936590:260,685...335,143
Ensembl chrNW_004936590:260,685...334,721 		JBrowse link
G Retreg1 reticulophagy regulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:34338405) Ensembl
TreeGrafter
MGI
InterPro		 PMID:34338405 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936480:19,114,753...19,253,346
Ensembl chrNW_004936480:19,114,768...19,253,352 		JBrowse link
G Retreg2 reticulophagy regulator family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:34338405) Ensembl
MGI		 PMID:34338405 GO_REF:0000107 NCBI chrNW_004936569:1,593,091...1,599,745
Ensembl chrNW_004936569:1,593,085...1,599,437 		JBrowse link
G Retreg3 reticulophagy regulator family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:34338405) Ensembl
MGI
InterPro		 PMID:34338405 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936490:17,334,458...17,357,544
Ensembl chrNW_004936490:17,334,464...17,357,570 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936559:684,536...792,829
Ensembl chrNW_004936559:690,397...792,835 		JBrowse link
G Snx7 sorting nexin 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936537:940,282...1,022,903
Ensembl chrNW_004936537:940,724...1,022,887 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936531:8,555,966...8,562,829
Ensembl chrNW_004936531:8,555,637...8,562,885 		JBrowse link
G Tex264 testis expressed 264, ER-phagy receptor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:31006538) MGI
TreeGrafter
Ensembl		 PMID:31006538 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936529:3,008,355...3,039,537
Ensembl chrNW_004936529:3,008,056...3,039,562 		JBrowse link
G Uba5 ubiquitin like modifier activating enzyme 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:5,997,459...6,010,776
Ensembl chrNW_004936529:5,996,707...6,014,227 		JBrowse link
G Ufc1 ubiquitin-fold modifier conjugating enzyme 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936903:449,042...462,727
Ensembl chrNW_004936903:449,039...462,727 		JBrowse link
G Ufl1 UFM1 specific ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936699:1,131,385...1,163,310
Ensembl chrNW_004936699:1,129,344...1,163,530 		JBrowse link
G Ufm1 ubiquitin fold modifier 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937057:143,001...153,873
Ensembl chrNW_004937057:142,995...153,873 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936660:2,160,394...2,188,848
Ensembl chrNW_004936660:2,163,844...2,187,080 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936821:1,051,247...1,162,500
Ensembl chrNW_004936821:1,051,053...1,162,735 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:33,807,825...33,814,520
Ensembl chrNW_004936471:33,807,010...33,814,573 		JBrowse link
ribophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Armc3 armadillo repeat containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936520:5,116,628...5,211,163
Ensembl chrNW_004936520:5,116,628...5,211,163 		JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936590:260,685...335,143
Ensembl chrNW_004936590:260,685...334,721 		JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irgq immunity related GTPase Q involved_in ISO (PMID:39481378) UniProt PMID:39481378 NCBI chrNW_004936706:790,878...799,100
Ensembl chrNW_004936706:790,963...798,969 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936750:1,381,864...1,406,736
Ensembl chrNW_004936750:1,381,851...1,407,323 		JBrowse link
G Stbd1 starch binding domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936676:300,244...304,206
Ensembl chrNW_004936676:299,963...304,213 		JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:5,073,274...5,103,733
Ensembl chrNW_004936492:5,073,191...5,103,739 		JBrowse link
type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:757,500...778,416
Ensembl chrNW_004936721:758,181...778,053 		JBrowse link
G Mfn2 mitofusin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:767,754...795,258
Ensembl chrNW_004936474:767,671...796,556 		JBrowse link
G Optn optineurin involved_in ISO (PMID:25294927) ParkinsonsUK-UCL PMID:25294927 NCBI chrNW_004937104:73,340...113,179 JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chrNW_004936750:1,381,864...1,406,736
Ensembl chrNW_004936750:1,381,851...1,407,323 		JBrowse link
xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16 like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24954904) Ensembl
MGI		 PMID:24954904 GO_REF:0000107 NCBI chrNW_004936525:3,973,574...4,010,442
Ensembl chrNW_004936525:3,972,558...4,010,514 		JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in ISO (PMID:23022382), (PMID:25771791) DisProt PMID:23022382 PMID:25771791 NCBI chrNW_004936490:12,576,752...12,609,273 JBrowse link
G Lgals8 galectin 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:16,357,433...16,374,675
Ensembl chrNW_004936484:16,357,816...16,374,689 		JBrowse link
G LOC101960300 calcium-binding and coiled-coil domain-containing protein 2-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936570:22,898...25,121 JBrowse link
G Mapk3 mitogen-activated protein kinase 3 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chrNW_004936501:12,342,670...12,390,650
Ensembl chrNW_004936501:12,384,804...12,392,180 		JBrowse link
G Nod1 nucleotide binding oligomerization domain containing 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chrNW_004936478:6,717,354...6,768,293
Ensembl chrNW_004936478:6,715,245...6,768,372 		JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chrNW_004936475:3,708,069...3,742,845
Ensembl chrNW_004936475:3,713,362...3,745,982 		JBrowse link
G Ripk2 receptor interacting serine/threonine kinase 2 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chrNW_004936544:3,606,925...3,653,248
Ensembl chrNW_004936544:3,606,879...3,655,532 		JBrowse link
G Rnf213 ring finger protein 213 involved_in ISO (PMID:34012115) UniProt PMID:34012115 NCBI chrNW_004936594:4,241,006...4,331,841
Ensembl chrNW_004936594:4,241,396...4,331,868 		JBrowse link
G Tlr2 toll like receptor 2 acts_upstream_of ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004936576:522,234...531,660
Ensembl chrNW_004936576:527,434...529,788 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24954904) Ensembl
MGI		 PMID:24954904 GO_REF:0000107 NCBI chrNW_004936765:909,118...946,788
Ensembl chrNW_004936765:907,877...946,822 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17413
    cellular process 17016
      process utilizing autophagic mechanism 515
        autophagy 515
          macroautophagy 319
            aggrephagy + 18
            amphisome-lysosome fusion 0
            autophagosome maturation + 65
            autophagosome organization + 121
            autophagosome-endosome fusion 1
            autophagosome-lysosome fusion + 12
            glycophagy 9
            lipophagy + 8
            lysophagy 0
            mitophagy + 80
            negative regulation of macroautophagy + 38
            nucleophagy + 20
            pexophagy 6
            positive regulation of macroautophagy + 98
            proteaphagy 0
            regulation of macroautophagy + 154
            reticulophagy + 22
            ribophagy 2
            xenophagy + 16
Path 2
Term Annotations click to browse term
  biological_process 17413
    cellular process 17016
      metabolic process 11317
        catabolic process 2418
          autophagy 515
            macroautophagy 319
              aggrephagy + 18
              amphisome-lysosome fusion 0
              autophagosome maturation + 65
              autophagosome organization + 121
              autophagosome-endosome fusion 1
              autophagosome-lysosome fusion + 12
              glycophagy 9
              lipophagy + 8
              lysophagy 0
              mitophagy + 80
              negative regulation of macroautophagy + 38
              nucleophagy + 20
              pexophagy 6
              positive regulation of macroautophagy + 98
              proteaphagy 0
              regulation of macroautophagy + 154
              reticulophagy + 22
              ribophagy 2
              xenophagy + 16
paths to the root