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ONTOLOGY REPORT - ANNOTATIONS

Term:macroautophagy
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Accession:GO:0016236 term browser browse the term
Definition:The autophagic process that proceeds via the formation of an autophagosome.
Synonyms:narrow_synonym: selective autophagy
 broad_synonym: autophagy
 alt_id: GO:0034262
 xref: Reactome:R-HSA-1632852 "Macroautophagy";   Reactome:R-HSA-5205685 "PINK1-PRKN Mediated Mitophagy";   Reactome:R-HSA-8934903 "Receptor Mediated Mitophagy"


show annotations for term's descendants           Sort by:
macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG12 autophagy related 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:119,948,443...119,965,702
Ensembl chr 2:119,941,997...119,965,696 		JBrowse link
G ATG14 autophagy related 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:184,701,020...184,743,752
Ensembl chr 1:184,686,142...184,743,706 		JBrowse link
G ATG16L1 autophagy related 16 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:133,651,294...133,693,472
Ensembl chr15:133,651,298...133,693,468 		JBrowse link
G ATG16L2 autophagy related 16 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:7,346,973...7,360,189
Ensembl chr 9:7,347,002...7,365,625 		JBrowse link
G ATG3 autophagy related 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24035364) Ensembl
MGI		 PMID:24035364 GO_REF:0000107 NCBI chr13:147,279,110...147,309,597
Ensembl chr13:147,279,437...147,309,590 		JBrowse link
G ATG5 autophagy related 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22496425), (PMID:23704209), (PMID:24035364)
(PMID:20453062)		 Ensembl
MGI
UniProt		 PMID:20453062 PMID:22496425 PMID:23704209 PMID:24035364 GO_REF:0000107 GO_REF:0000117 NCBI chr 1:72,343,950...72,520,402
Ensembl chr 1:72,270,799...72,520,396 		JBrowse link
G ATG7 autophagy related 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24035364)
(PMID:22496425), (PMID:23704209)		 Ensembl
MGI		 PMID:22496425 PMID:23704209 PMID:24035364 GO_REF:0000107 NCBI chr13:67,301,756...67,699,141
Ensembl chr13:67,417,938...67,707,654 		JBrowse link
G BECN1 beclin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:17468177)
(PMID:14657337)		 Ensembl
MGI
UniProt		 PMID:14657337 PMID:17468177 GO_REF:0000024 GO_REF:0000107 NCBI chr12:20,041,914...20,054,249
Ensembl chr12:20,041,956...20,054,373 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16714284) Ensembl
MGI		 PMID:16714284 GO_REF:0000107 NCBI chr 3:18,433,564...18,450,296
Ensembl chr 3:18,433,836...18,450,290 		JBrowse link
G EI24 EI24 autophagy associated transmembrane protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:52,704,560...52,724,966
Ensembl chr 9:52,704,570...52,720,938 		JBrowse link
G HDAC10 histone deacetylase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:439,142...445,337
Ensembl chr 5:439,808...445,334 		JBrowse link
G HMOX1 heme oxygenase 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:20705711) Ensembl
MGI		 PMID:20705711 GO_REF:0000107
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:37,957,830...37,959,505
Ensembl chr17:37,957,507...37,959,505 		JBrowse link
G MAP1LC3B microtubule associated protein 1 light chain 3 beta involved_in ISO (PMID:28223137) UniProt PMID:28223137 NCBI chr 6:1,919,879...1,941,069
Ensembl chr 6:1,915,387...1,941,069 		JBrowse link
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:15,371,182...15,379,067
Ensembl chr10:15,372,879...15,379,172 		JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in
acts_upstream_of		 IEA
ISO		 (PMID:16714284) Ensembl
MGI		 PMID:16714284 GO_REF:0000107 NCBI chr 6:71,286,989...71,412,913
Ensembl chr 6:71,286,989...71,412,888 		JBrowse link
G MYO5A myosin VA ISO RGD PMID:29217155 RGD:42721980 NCBI chr 1:119,165,751...119,398,591
Ensembl chr 1:119,165,942...119,394,725 		JBrowse link
G NBR1 NBR1 autophagy cargo receptor involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:19,755,733...19,789,014
Ensembl chr12:19,755,738...19,788,960 		JBrowse link
G NPC1 NPC intracellular cholesterol transporter 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:17468177) Ensembl
MGI		 PMID:17468177 GO_REF:0000107 NCBI chr 6:108,403,126...108,450,486
Ensembl chr 6:108,402,879...108,450,990 		JBrowse link
G PDCD6IP programmed cell death 6 interacting protein involved_in ISO (PMID:25686249) UniProt PMID:25686249 NCBI chr13:19,597,064...19,664,047
Ensembl chr13:19,597,059...19,665,996 		JBrowse link
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chr 2:41,829,969...42,024,062
Ensembl chr 2:41,829,916...42,024,362 		JBrowse link
G PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24098492) Ensembl
MGI		 PMID:24098492 GO_REF:0000107 NCBI chr 9:65,073,728...65,154,861
Ensembl chr 9:65,073,738...65,154,538 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:125,890,598...126,038,753
Ensembl chr 6:125,890,712...126,043,157 		JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr13:1,730,988...1,815,555
Ensembl chr13:1,731,023...1,815,556 		JBrowse link
G PIM2 Pim-2 proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of		 IEA
ISO		 (PMID:17476689) Ensembl
MGI		 PMID:17476689 GO_REF:0000107 NCBI chr  X:42,993,547...42,998,575
Ensembl chr  X:42,993,551...42,998,573 		JBrowse link
G PLAA phospholipase A2 activating protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:196,176,004...196,219,614
Ensembl chr 1:196,176,456...196,219,834 		JBrowse link
G RAB2A RAB2A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:72,800,617...72,882,183
Ensembl chr 4:72,800,623...72,882,151 		JBrowse link
G RAB2B RAB2B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:77,698,907...77,717,211
Ensembl chr 7:77,689,551...77,716,772 		JBrowse link
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:9,734,766...9,828,330
Ensembl chr10:9,734,768...9,828,525 		JBrowse link
G SNF8 SNF8 subunit of ESCRT-II involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:25,142,748...25,152,847
Ensembl chr12:25,142,813...25,153,016 		JBrowse link
G SQSTM1 sequestosome 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:78,752,768...78,763,998
Ensembl chr 2:78,752,771...78,763,938 		JBrowse link
G TBC1D5 TBC1 domain family member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:4,191,544...4,738,448
Ensembl chr13:4,201,255...4,633,312 		JBrowse link
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23704209) Ensembl
MGI		 PMID:23704209 GO_REF:0000107 NCBI chr 2:4,844,627...4,860,562
Ensembl chr 2:4,844,637...4,860,498 		JBrowse link
G TECPR1 tectonin beta-propeller repeat containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:5,414,071...5,442,953
Ensembl chr 3:5,414,074...5,442,943 		JBrowse link
G TMEM74 transmembrane protein 74 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:28,722,243...28,727,007
Ensembl chr 4:28,722,273...28,731,093 		JBrowse link
G TP53INP2 tumor protein p53 inducible nuclear protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24713655) Ensembl
MGI		 PMID:24713655 GO_REF:0000107 NCBI chr17:38,104,189...38,113,167
Ensembl chr17:38,104,200...38,113,166 		JBrowse link
G UBQLN1 ubiquilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:31,275,916...31,317,521
Ensembl chr10:31,275,868...31,317,516 		JBrowse link
G UBXN6 UBX domain protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:74,357,522...74,378,600
Ensembl chr 2:74,357,517...74,378,592 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21258367) Ensembl
MGI		 PMID:21258367 GO_REF:0000107 NCBI chr14:23,423,693...23,448,130
Ensembl chr14:23,423,698...23,448,136 		JBrowse link
G VCP valosin containing protein involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:235,854,532...235,869,712
Ensembl chr 1:235,851,206...235,869,634 		JBrowse link
G VPS41 VPS41 subunit of HOPS complex involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:55,293,655...55,466,628
Ensembl chr18:55,301,624...55,466,628 		JBrowse link
G VTI1A vesicle transport through interaction with t-SNAREs 1A involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:122,848,727...123,217,568
Ensembl chr14:122,849,004...123,215,938 		JBrowse link
G VTI1B vesicle transport through interaction with t-SNAREs 1B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:91,386,020...91,413,480
Ensembl chr 7:91,374,640...91,413,607 		JBrowse link
G YOD1 YOD1 deubiquitinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:67,672,640...67,681,889
Ensembl chr 9:67,672,651...67,681,826 		JBrowse link
G ZFYVE1 zinc finger FYVE-type containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:96,323,256...96,380,286
Ensembl chr 7:96,323,262...96,380,284 		JBrowse link
aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG4A autophagy related 4A cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:88,545,924...88,633,328
Ensembl chr  X:88,548,751...88,633,321 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:140,223,903...140,245,590
Ensembl chr15:140,223,904...140,246,321 		JBrowse link
G ATG4C autophagy related 4C cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:149,560,318...149,691,959
Ensembl chr 6:149,608,220...149,692,153 		JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:69,320,313...69,328,522
Ensembl chr 2:69,320,331...69,328,519 		JBrowse link
G ATG5 autophagy related 5 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:72,343,950...72,520,402
Ensembl chr 1:72,270,799...72,520,396 		JBrowse link
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:15,371,182...15,379,067
Ensembl chr10:15,372,879...15,379,172 		JBrowse link
G SQSTM1 sequestosome 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:78,752,768...78,763,998
Ensembl chr 2:78,752,771...78,763,938 		JBrowse link
G UBQLN1 ubiquilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:31,275,916...31,317,521
Ensembl chr10:31,275,868...31,317,516 		JBrowse link
G WDFY3 WD repeat and FYVE domain containing 3 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:133,665,585...133,939,860
Ensembl chr 8:133,675,345...133,937,221 		JBrowse link
G WDR81 WD repeat domain 81 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:47,921,818...47,933,782
Ensembl chr12:47,922,012...47,933,778 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:15,935,354...16,119,082
Ensembl chr 2:15,935,375...16,119,079 		JBrowse link
G AP4M1 adaptor related protein complex 4 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:8,013,701...8,017,701
Ensembl chr 3:8,013,747...8,017,700 		JBrowse link
G AP5Z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:30930081) MGI
Ensembl		 PMID:30930081 GO_REF:0000107 NCBI chr 3:3,622,684...3,642,370
Ensembl chr 3:3,622,699...3,642,412 		JBrowse link
G ATG10 autophagy related 10 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:90,436,795...90,665,383
Ensembl chr 2:90,437,027...90,666,196 		JBrowse link
G ATG101 autophagy related 101 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:17,418,085...17,425,770
Ensembl chr 5:17,418,121...17,425,624 		JBrowse link
G ATG12 autophagy related 12 involved_in IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:119,948,443...119,965,702
Ensembl chr 2:119,941,997...119,965,696 		JBrowse link
G ATG13 autophagy related 13 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19211835) MGI
Ensembl
InterPro		 PMID:19211835 GO_REF:0000002 GO_REF:0000107 NCBI chr 2:15,856,859...15,916,122
Ensembl chr 2:15,856,860...15,916,109 		JBrowse link
G ATG14 autophagy related 14 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:184,701,020...184,743,752
Ensembl chr 1:184,686,142...184,743,706 		JBrowse link
G ATG16L1 autophagy related 16 like 1 involved_in IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr15:133,651,294...133,693,472
Ensembl chr15:133,651,298...133,693,468 		JBrowse link
G ATG16L2 autophagy related 16 like 2 involved_in
NOT|involved_in		 IEA
ISO		 (PMID:22082872) Ensembl
UniProt
InterPro		 PMID:22082872 GO_REF:0000002 GO_REF:0000107 NCBI chr 9:7,346,973...7,360,189
Ensembl chr 9:7,347,002...7,365,625 		JBrowse link
G ATG2A autophagy related 2A involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:7,261,819...7,282,614
Ensembl chr 2:7,262,031...7,282,347 		JBrowse link
G ATG2B autophagy related 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:117,506,298...117,586,651
Ensembl chr 7:117,506,302...117,586,545 		JBrowse link
G ATG3 autophagy related 3 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:21220506) Ensembl
MGI
GO_Central		 PMID:21220506 GO_REF:0000033 GO_REF:0000107 NCBI chr13:147,279,110...147,309,597
Ensembl chr13:147,279,437...147,309,590 		JBrowse link
G ATG4A autophagy related 4A cysteine peptidase involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:88,545,924...88,633,328
Ensembl chr  X:88,548,751...88,633,321 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr15:140,223,903...140,245,590
Ensembl chr15:140,223,904...140,246,321 		JBrowse link
G ATG4C autophagy related 4C cysteine peptidase involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:149,560,318...149,691,959
Ensembl chr 6:149,608,220...149,692,153 		JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:69,320,313...69,328,522
Ensembl chr 2:69,320,331...69,328,519 		JBrowse link
G ATG5 autophagy related 5 involved_in
acts_upstream_of_or_within		 ISO
IBA
IEA		 (PMID:23704209) RGD
GO_Central
MGI
Ensembl		 PMID:16420522 PMID:23704209 GO_REF:0000033 GO_REF:0000107 RGD:1643189 NCBI chr 1:72,343,950...72,520,402
Ensembl chr 1:72,270,799...72,520,396 		JBrowse link
G ATG7 autophagy related 7 involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 (PMID:23704209) Ensembl
GO_Central
MGI		 PMID:23704209 GO_REF:0000033 GO_REF:0000107 NCBI chr13:67,301,756...67,699,141
Ensembl chr13:67,417,938...67,707,654 		JBrowse link
G ATG9A autophagy related 9A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15755735), (PMID:22456507)
(PMID:23402761)
(PMID:22456507)		 MGI
Ensembl		 PMID:15755735 PMID:22456507 PMID:23402761 GO_REF:0000107 NCBI chr15:121,254,355...121,265,564
Ensembl chr15:121,254,355...121,265,569 		JBrowse link
G ATG9B autophagy related 9B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15755735) MGI
Ensembl		 PMID:15755735 GO_REF:0000107 NCBI chr18:6,200,246...6,208,988
Ensembl chr18:6,200,639...6,208,286 		JBrowse link
G ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in IEA
IBA
ISS		 Ensembl
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:31,674,659...31,744,981
Ensembl chr14:31,674,757...31,744,969 		JBrowse link
G BECN1 beclin 1 involved_in ISO
IBA
IEA
ISS		 RGD
GO_Central
Ensembl
UniProt		 PMID:16420522 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 RGD:1643189 NCBI chr12:20,041,914...20,054,249
Ensembl chr12:20,041,956...20,054,373 		JBrowse link
G BECN2 beclin 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:15,388,712...15,390,250
Ensembl chr10:15,388,605...15,390,226 		JBrowse link
G CTSD cathepsin D involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15452145) Ensembl
MGI		 PMID:15452145 GO_REF:0000107 NCBI chr 2:1,188,548...1,197,642
Ensembl chr 2:1,188,549...1,197,643 		JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:110,881,770...110,954,092
Ensembl chr 4:110,881,768...110,953,967 		JBrowse link
G EMC6 ER membrane protein complex subunit 6 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:49,759,153...49,760,069
Ensembl chr12:49,759,163...49,760,065 		JBrowse link
G FBXO30 F-box protein 30 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24430976) Ensembl
MGI		 PMID:24430976 GO_REF:0000107 NCBI chr 1:19,806,363...19,893,350
Ensembl chr 1:19,806,765...19,893,339 		JBrowse link
G GABARAP GABA type A receptor-associated protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:52,596,130...52,598,166
Ensembl chr12:52,596,543...52,598,194 		JBrowse link
G GABARAPL1 GABA type A receptor associated protein like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:61,758,127...61,767,427
Ensembl chr 5:61,758,130...61,767,601 		JBrowse link
G GABARAPL2 GABA type A receptor associated protein like 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:12,122,219...12,132,986
Ensembl chr 6:12,107,422...12,132,991 		JBrowse link
G LOC102158581 gamma-aminobutyric acid receptor-associated protein pseudogene involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:76,675,741...76,676,338 JBrowse link
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr17:37,957,830...37,959,505
Ensembl chr17:37,957,507...37,959,505 		JBrowse link
G MAP1LC3B microtubule associated protein 1 light chain 3 beta involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:1,919,879...1,941,069
Ensembl chr 6:1,915,387...1,941,069 		JBrowse link
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:15,371,182...15,379,067
Ensembl chr10:15,372,879...15,379,172 		JBrowse link
G MTM1 myotubularin 1 acts_upstream_of ISO (PMID:23695157) MGI PMID:23695157 NCBI chr  X:122,286,904...122,379,302
Ensembl chr  X:122,286,916...122,379,299 		JBrowse link
G NSFL1C NSFL1 cofactor involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:33,869,487...33,890,873
Ensembl chr17:33,869,527...33,892,064 		JBrowse link
G PACS2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23455425) MGI
Ensembl		 PMID:23455425 GO_REF:0000107
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA		 (PMID:24098492) RGD
MGI
GO_Central
Ensembl		 PMID:12453151 PMID:24098492 GO_REF:0000033 GO_REF:0000107 RGD:2303129 NCBI chr 6:125,890,598...126,038,753
Ensembl chr 6:125,890,712...126,043,157 		JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15452145) Ensembl
MGI		 PMID:15452145 GO_REF:0000107 NCBI chr 7:96,478,179...96,567,884
Ensembl chr 7:96,478,190...96,569,130 		JBrowse link
G RAB19 RAB19, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:9,367,239...9,391,097
Ensembl chr18:9,364,451...9,384,083 		JBrowse link
G RAB1A RAB1A, member RAS oncogene family involved_in IEA
IBA
ISS		 Ensembl
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:76,837,673...76,868,156
Ensembl chr 3:76,837,430...76,869,778 		JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:28,632,065...28,658,958
Ensembl chr 7:28,632,082...28,658,952 		JBrowse link
G RAB33A RAB33A, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:106,708,402...106,723,803
Ensembl chr  X:106,712,398...106,723,404 		JBrowse link
G RAB33B RAB33B, member RAS oncogene family involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:87,545,106...87,570,545
Ensembl chr 8:87,545,116...87,570,545 		JBrowse link
G RAB43 RAB43, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:71,564,250...71,596,318
Ensembl chr13:71,562,350...71,596,249 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:71,777,422...71,886,758
Ensembl chr13:71,777,424...71,852,694 		JBrowse link
G RB1CC1 RB1 inducible coiled-coil 1 involved_in IEA
IBA		 Ensembl
GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:77,593,204...77,649,551
Ensembl chr 4:77,594,324...77,649,548 		JBrowse link
G RUFY4 RUN and FYVE domain containing 4 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr15:120,193,657...120,213,625
Ensembl chr15:120,192,235...120,213,462 		JBrowse link
G STING1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:141,359,402...141,367,222
Ensembl chr 2:141,358,993...141,367,198 		JBrowse link
G STX12 syntaxin 12 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:84,918,827...84,960,235
Ensembl chr 6:84,918,678...84,960,720 		JBrowse link
G SYNPO2 synaptopodin 2 involved_in ISO PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 8:104,677,580...104,844,169
Ensembl chr 8:104,677,583...104,873,791 		JBrowse link
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23908015) Ensembl
MGI		 PMID:23908015 GO_REF:0000107 NCBI chr 2:4,844,627...4,860,562
Ensembl chr 2:4,844,637...4,860,498 		JBrowse link
G TMEM41B transmembrane protein 41B involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:223,973...249,813
Ensembl chr 9:223,994...250,293 		JBrowse link
G TP53INP1 tumor protein p53 inducible nuclear protein 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:41,747,654...41,766,688
Ensembl chr 4:41,747,654...41,766,685 		JBrowse link
G TP53INP2 tumor protein p53 inducible nuclear protein 2 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr17:38,104,189...38,113,167
Ensembl chr17:38,104,200...38,113,166 		JBrowse link
G TRAF6 TNF receptor associated factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:24,602,749...24,628,263
Ensembl chr 2:24,602,804...24,626,072 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:257,051,421...257,066,911
Ensembl chr 1:257,054,228...257,066,909 		JBrowse link
G UBQLN1 ubiquilin 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr10:31,275,916...31,317,521
Ensembl chr10:31,275,868...31,317,516 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:48,948,062...48,951,392
Ensembl chr  X:48,948,389...48,950,263 		JBrowse link
G UBXN2A UBX domain protein 2A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:114,667,278...114,714,185
Ensembl chr 3:114,673,035...114,714,178 		JBrowse link
G UBXN2B UBX domain protein 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:74,405,876...74,437,650
Ensembl chr 4:74,405,902...74,437,615 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr14:23,423,693...23,448,130
Ensembl chr14:23,423,698...23,448,136 		JBrowse link
G ULK2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:59,806,904...59,878,398
Ensembl chr12:59,806,955...59,878,388 		JBrowse link
G ULK3 unc-51 like kinase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:58,699,989...58,707,191
Ensembl chr 7:58,699,984...58,707,187 		JBrowse link
G VMP1 vacuole membrane protein 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 Ensembl chr12:35,933,173...36,065,956 JBrowse link
G WDR45 WD repeat domain 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:43,150,691...43,155,981
Ensembl chr  X:43,147,477...43,156,234 		JBrowse link
G WDR45B WD repeat domain 45B involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:522,762...547,333
Ensembl chr12:522,829...549,156 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:11,715,332...11,752,009
Ensembl chr12:11,715,318...11,752,021 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:3,800,170...3,830,973
Ensembl chr 3:3,800,186...3,834,413 		JBrowse link
autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFG2B AFG2 AAA ATPase homolog B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:126,314,573...126,335,193
Ensembl chr 1:126,313,402...126,335,475 		JBrowse link
G ATG12 autophagy related 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:119,948,443...119,965,702
Ensembl chr 2:119,941,997...119,965,696 		JBrowse link
G ATG14 autophagy related 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:184,701,020...184,743,752
Ensembl chr 1:184,686,142...184,743,706 		JBrowse link
G BECN1 beclin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:20,041,914...20,054,249
Ensembl chr12:20,041,956...20,054,373 		JBrowse link
G CHMP1A charged multivesicular body protein 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:351,878...358,655
Ensembl chr 6:351,866...358,653 		JBrowse link
G CHMP1B charged multivesicular body protein 1B involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chr 6:97,356,924...97,359,613 JBrowse link
G CHMP2A charged multivesicular body protein 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:63,102,155...63,105,032
Ensembl chr 6:63,102,156...63,104,943 		JBrowse link
G CHMP2B charged multivesicular body protein 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:168,534,950...168,569,574
Ensembl chr13:168,533,694...168,569,688 		JBrowse link
G CHMP3 charged multivesicular body protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:58,206,921...58,279,252
Ensembl chr 3:58,206,921...58,279,248 		JBrowse link
G CHMP4A charged multivesicular body protein 4A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:75,089,092...75,093,796
Ensembl chr 7:75,089,423...75,097,761 		JBrowse link
G CHMP4B charged multivesicular body protein 4B involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:37,285,422...37,334,103
Ensembl chr17:37,285,442...37,334,101 		JBrowse link
G CHMP4C charged multivesicular body protein 4C involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:54,860,481...54,895,229
Ensembl chr 4:54,859,930...54,895,192 		JBrowse link
G CHMP5 charged multivesicular body protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:33,212,769...33,227,237
Ensembl chr10:33,211,516...33,227,302 		JBrowse link
G CHMP6 charged multivesicular body protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:1,691,821...1,698,347
Ensembl chr12:1,691,823...1,698,305 		JBrowse link
G CHMP7 charged multivesicular body protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:7,390,066...7,403,657
Ensembl chr14:7,390,061...7,403,654 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16714284) Ensembl
MGI		 PMID:16714284 GO_REF:0000107 NCBI chr 3:18,433,564...18,450,296
Ensembl chr 3:18,433,836...18,450,290 		JBrowse link
G ELP6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:27715390) MGI
Ensembl		 PMID:27715390 GO_REF:0000107 NCBI chr13:30,329,815...30,341,952
Ensembl chr13:30,325,249...30,341,295 		JBrowse link
G EPG5 ectopic P-granules 5 autophagy tethering factor involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:23479740) Ensembl
MGI
GO_Central		 PMID:23479740 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:95,493,779...95,616,794
Ensembl chr 1:95,498,720...95,616,755 		JBrowse link
G GABARAP GABA type A receptor-associated protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:52,596,130...52,598,166
Ensembl chr12:52,596,543...52,598,194 		JBrowse link
G GABARAPL1 GABA type A receptor associated protein like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:61,758,127...61,767,427
Ensembl chr 5:61,758,130...61,767,601 		JBrowse link
G GABARAPL2 GABA type A receptor associated protein like 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:12,122,219...12,132,986
Ensembl chr 6:12,107,422...12,132,991 		JBrowse link
G LAMP2 lysosomal associated membrane protein 2 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:98,586,718...98,623,939
Ensembl chr  X:98,581,992...98,623,940 		JBrowse link
G LIX1 limb and CNS expressed 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:103,741,379...103,801,879
Ensembl chr 2:103,744,330...103,792,578 		JBrowse link
G LIX1L limb and CNS expressed 1 like involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:99,384,293...99,403,554
Ensembl chr 4:99,384,394...99,404,891 		JBrowse link
G LOC102158581 gamma-aminobutyric acid receptor-associated protein pseudogene involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:76,675,741...76,676,338 JBrowse link
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr17:37,957,830...37,959,505
Ensembl chr17:37,957,507...37,959,505 		JBrowse link
G MAP1LC3B microtubule associated protein 1 light chain 3 beta involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:1,919,879...1,941,069
Ensembl chr 6:1,915,387...1,941,069 		JBrowse link
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr10:15,371,182...15,379,067
Ensembl chr10:15,372,879...15,379,172 		JBrowse link
G MCOLN1 mucolipin TRP cation channel 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20600908) Ensembl
MGI		 PMID:20600908 GO_REF:0000107 NCBI chr 2:71,602,888...71,613,331
Ensembl chr 2:71,602,770...71,613,312 		JBrowse link
G MFSD8 major facilitator superfamily domain containing 8 involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 (PMID:29514215) Ensembl
GO_Central
MGI		 PMID:29514215 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:96,925,063...96,972,390
Ensembl chr 8:96,925,081...96,972,383 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:125,890,598...126,038,753
Ensembl chr 6:125,890,712...126,043,157 		JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:1,730,988...1,815,555
Ensembl chr13:1,731,023...1,815,556 		JBrowse link
G RUBCNL rubicon like autophagy enhancer involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr11:20,995,439...21,036,429
Ensembl chr11:20,995,688...21,036,014 		JBrowse link
G SNAP29 synaptosome associated protein 29 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:50,492,187...50,511,475
Ensembl chr14:50,492,187...50,511,456 		JBrowse link
G SNAPIN SNAP associated protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22797916)
(PMID:20920792)		 Ensembl
MGI		 PMID:20920792 PMID:22797916 GO_REF:0000107 NCBI chr 4:95,987,524...95,989,527
Ensembl chr 4:95,984,358...95,989,474 		JBrowse link
G SNX14 sorting nexin 14 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:54,460,645...54,547,204
Ensembl chr 1:54,460,640...54,547,216 		JBrowse link
G STX17 syntaxin 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:241,657,463...241,785,270
Ensembl chr 1:241,657,506...241,765,783 		JBrowse link
G TECPR1 tectonin beta-propeller repeat containing 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:5,414,071...5,442,953
Ensembl chr 3:5,414,074...5,442,943 		JBrowse link
G UBQLN1 ubiquilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:31,275,916...31,317,521
Ensembl chr10:31,275,868...31,317,516 		JBrowse link
G UVRAG UV radiation resistance associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:10,088,779...10,370,857
Ensembl chr 9:10,088,798...10,370,855 		JBrowse link
G VAMP7 vesicle associated membrane protein 7 NOT|involved_in ISO (PMID:23217709) UniProt PMID:23217709 NCBI chr  X:125,863,266...125,917,232
Ensembl chr  X:125,863,292...125,917,225 		JBrowse link
G VAMP8 vesicle associated membrane protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:59,187,900...59,193,165
Ensembl chr 3:59,185,735...59,193,128 		JBrowse link
G VCP valosin containing protein involved_in ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:235,854,532...235,869,712
Ensembl chr 1:235,851,206...235,869,634 		JBrowse link
G VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT|involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chr 7:100,482,953...100,510,164
Ensembl chr 7:100,482,956...100,506,161 		JBrowse link
G VPS16 VPS16 core subunit of CORVET and HOPS complexes involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:32,803,596...32,825,974
Ensembl chr17:32,803,412...32,825,933 		JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:30,469,003...30,496,626
Ensembl chr14:30,469,070...30,495,470 		JBrowse link
G VPS33B VPS33B late endosome and lysosome associated NOT|involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chr 7:55,840,612...55,865,045
Ensembl chr 7:55,840,607...55,865,716 		JBrowse link
G VTI1B vesicle transport through interaction with t-SNAREs 1B NOT|involved_in ISO (PMID:23217709) UniProt PMID:23217709 NCBI chr 7:91,386,020...91,413,480
Ensembl chr 7:91,374,640...91,413,607 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 NOT|involved_in ISO (PMID:20505359) UniProt PMID:20505359 NCBI chr 3:3,800,170...3,830,973
Ensembl chr 3:3,800,186...3,834,413 		JBrowse link
autophagosome membrane docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG14 autophagy related 14 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:184,701,020...184,743,752
Ensembl chr 1:184,686,142...184,743,706 		JBrowse link
G ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr14:31,674,659...31,744,981
Ensembl chr14:31,674,757...31,744,969 		JBrowse link
G CALM1 calmodulin 1 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chr 7:112,160,823...112,171,754
Ensembl chr 7:112,160,806...112,171,744 		JBrowse link
G CALM2 calmodulin 2 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chr 3:93,371,765...93,386,378
Ensembl chr 3:93,372,045...93,386,218 		JBrowse link
G CALM3 calmodulin 3 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chr 6:52,506,979...52,516,704
Ensembl chr 6:52,506,674...52,516,703 		JBrowse link
G SNAP29 synaptosome associated protein 29 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:50,492,187...50,511,475
Ensembl chr14:50,492,187...50,511,456 		JBrowse link
G STX17 syntaxin 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:241,657,463...241,785,270
Ensembl chr 1:241,657,506...241,765,783 		JBrowse link
G VAMP8 vesicle associated membrane protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:59,187,900...59,193,165
Ensembl chr 3:59,185,735...59,193,128 		JBrowse link
G VMP1 vacuole membrane protein 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr12:35,933,173...36,065,956 JBrowse link
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP13A2 ATPase cation transporting 13A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:75,618,317...75,638,591
Ensembl chr 6:75,618,319...75,638,591 		JBrowse link
G GBA1 glucosylceramidase beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23707074) Ensembl
ARUK-UCL		 PMID:23707074 GO_REF:0000107 NCBI chr 4:94,583,905...94,606,689
Ensembl chr 4:94,584,134...94,609,745 		JBrowse link
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chr 2:41,829,969...42,024,062
Ensembl chr 2:41,829,916...42,024,362 		JBrowse link
G PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24098492) Ensembl
MGI		 PMID:24098492 GO_REF:0000107 NCBI chr 9:65,073,728...65,154,861
Ensembl chr 9:65,073,738...65,154,538 		JBrowse link
G SPG11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25365221) MGI
Ensembl		 PMID:25365221 GO_REF:0000107 NCBI chr 1:126,890,464...126,998,014
Ensembl chr 1:126,902,186...127,003,397
Ensembl chr 1:126,902,186...127,003,397 		JBrowse link
G ZFYVE26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25365221) MGI
Ensembl		 PMID:25365221 GO_REF:0000107 NCBI chr 7:91,518,444...91,590,480
Ensembl chr 7:91,518,452...91,590,449 		JBrowse link
autophagosome-endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RUBCNL rubicon like autophagy enhancer involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr11:20,995,439...21,036,429
Ensembl chr11:20,995,688...21,036,014 		JBrowse link
autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL8B ADP ribosylation factor like GTPase 8B involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:61,640,619...61,696,819
Ensembl chr13:61,640,671...61,698,374 		JBrowse link
G ATP13A2 ATPase cation transporting 13A2 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:75,618,317...75,638,591
Ensembl chr 6:75,618,319...75,638,591 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:18,433,564...18,450,296
Ensembl chr 3:18,433,836...18,450,290 		JBrowse link
G DIAPH3 diaphanous related formin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:33036023) Ensembl
MGI		 PMID:33036023 GO_REF:0000107 NCBI chr11:32,492,735...32,994,854
Ensembl chr11:32,492,740...32,994,844 		JBrowse link
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr10:52,224,367...52,408,928
Ensembl chr10:52,224,389...52,408,922 		JBrowse link
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:23,317,113...23,345,661
Ensembl chr12:23,317,208...23,346,424 		JBrowse link
G PLEKHM1 pleckstrin homology and RUN domain containing M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:17,984,169...18,035,377
Ensembl chr12:17,993,036...18,035,375 		JBrowse link
G RUBCNL rubicon like autophagy enhancer involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr11:20,995,439...21,036,429
Ensembl chr11:20,995,688...21,036,014 		JBrowse link
G TOM1 target of myb1 membrane trafficking protein involved_in IEA Ensembl GO_REF:0000107
G VPS39 VPS39 subunit of HOPS complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:129,144,338...129,198,760
Ensembl chr 1:129,144,344...129,198,761 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:6,037,732...6,142,569
Ensembl chr 3:6,037,741...6,142,575 		JBrowse link
glycophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG12 autophagy related 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:119,948,443...119,965,702
Ensembl chr 2:119,941,997...119,965,696 		JBrowse link
G ATG2A autophagy related 2A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:7,261,819...7,282,614
Ensembl chr 2:7,262,031...7,282,347 		JBrowse link
G ATG2B autophagy related 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:117,506,298...117,586,651
Ensembl chr 7:117,506,302...117,586,545 		JBrowse link
G ATG3 autophagy related 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:147,279,110...147,309,597
Ensembl chr13:147,279,437...147,309,590 		JBrowse link
G GAA alpha glucosidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:2,315,807...2,339,867
Ensembl chr12:2,315,809...2,341,327 		JBrowse link
G GABARAPL1 GABA type A receptor associated protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:61,758,127...61,767,427
Ensembl chr 5:61,758,130...61,767,601 		JBrowse link
G RB1CC1 RB1 inducible coiled-coil 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:77,593,204...77,649,551
Ensembl chr 4:77,594,324...77,649,548 		JBrowse link
G STBD1 starch binding domain 1 involved_in ISO (PMID:20810658) GO_Central
MGI		 PMID:20810658 NCBI chr 8:71,982,987...71,987,880 JBrowse link
G WDR45 WD repeat domain 45 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:43,150,691...43,155,981
Ensembl chr  X:43,147,477...43,156,234 		JBrowse link
G WDR45B WD repeat domain 45B involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:522,762...547,333
Ensembl chr12:522,829...549,156 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:11,715,332...11,752,009
Ensembl chr12:11,715,318...11,752,021 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:3,800,170...3,830,973
Ensembl chr 3:3,800,186...3,834,413 		JBrowse link
lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AUP1 AUP1 lipid droplet regulating VLDL assembly factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:68,520,048...68,523,076
Ensembl chr 3:68,519,969...68,523,073 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:71,777,422...71,886,758
Ensembl chr13:71,777,424...71,852,694 		JBrowse link
G SPART spartin involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:12,313,211...12,346,226
Ensembl chr11:12,313,335...12,346,204 		JBrowse link
mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI2 abl interactor 2 involved_in ISO (PMID:38081847) UniProt PMID:38081847 NCBI chr15:106,776,627...106,903,889
Ensembl chr15:106,776,631...106,900,333 		JBrowse link
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:15,935,354...16,119,082
Ensembl chr 2:15,935,375...16,119,079 		JBrowse link
G ARHGAP26 Rho GTPase activating protein 26 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:144,301,234...144,778,090
Ensembl chr 2:144,301,413...144,778,072 		JBrowse link
G ATG10 autophagy related 10 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:90,436,795...90,665,383
Ensembl chr 2:90,437,027...90,666,196 		JBrowse link
G ATG13 autophagy related 13 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:15,856,859...15,916,122
Ensembl chr 2:15,856,860...15,916,109 		JBrowse link
G ATG14 autophagy related 14 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:184,701,020...184,743,752
Ensembl chr 1:184,686,142...184,743,706 		JBrowse link
G ATG4A autophagy related 4A cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:88,545,924...88,633,328
Ensembl chr  X:88,548,751...88,633,321 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr15:140,223,903...140,245,590
Ensembl chr15:140,223,904...140,246,321 		JBrowse link
G ATG4C autophagy related 4C cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:149,560,318...149,691,959
Ensembl chr 6:149,608,220...149,692,153 		JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:69,320,313...69,328,522
Ensembl chr 2:69,320,331...69,328,519 		JBrowse link
G ATG5 autophagy related 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:72,343,950...72,520,402
Ensembl chr 1:72,270,799...72,520,396 		JBrowse link
G ATG7 autophagy related 7 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr13:67,301,756...67,699,141
Ensembl chr13:67,417,938...67,707,654 		JBrowse link
G ATG9A autophagy related 9A involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:121,254,355...121,265,564
Ensembl chr15:121,254,355...121,265,569 		JBrowse link
G ATG9B autophagy related 9B involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:6,200,246...6,208,988
Ensembl chr18:6,200,639...6,208,286 		JBrowse link
G BCL2L13 BCL2 like 13 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:31266807) MGI
Ensembl		 PMID:31266807 GO_REF:0000107 NCBI chr 5:69,779,290...69,846,638
Ensembl chr 5:69,778,950...69,855,272 		JBrowse link
G BECN1 beclin 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:20,041,914...20,054,249
Ensembl chr12:20,041,956...20,054,373 		JBrowse link
G BECN2 beclin 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:15,388,712...15,390,250
Ensembl chr10:15,388,605...15,390,226 		JBrowse link
G BNIP3 BCL2 interacting protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:140,362,123...140,371,951
Ensembl chr14:140,362,127...140,371,907 		JBrowse link
G CLEC16A C-type lectin domain containing 16A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:31,938,133...32,158,343
Ensembl chr 3:31,938,135...32,158,320 		JBrowse link
G CTSK cathepsin K involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 4:98,389,459...98,404,969
Ensembl chr 4:98,391,428...98,404,961 		JBrowse link
G EIF2S1 eukaryotic translation initiation factor 2 subunit alpha involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:91,085,025...91,109,835
Ensembl chr 7:91,085,335...91,109,827 		JBrowse link
G FUNDC1 FUN14 domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:39,726,194...39,737,663
Ensembl chr  X:39,724,998...39,737,532 		JBrowse link
G GABARAP GABA type A receptor-associated protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:52,596,130...52,598,166
Ensembl chr12:52,596,543...52,598,194 		JBrowse link
G GABARAPL1 GABA type A receptor associated protein like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:61,758,127...61,767,427
Ensembl chr 5:61,758,130...61,767,601 		JBrowse link
G GABARAPL2 GABA type A receptor associated protein like 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:12,122,219...12,132,986
Ensembl chr 6:12,107,422...12,132,991 		JBrowse link
G GBA1 glucosylceramidase beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23707074) Ensembl
MGI		 PMID:23707074 GO_REF:0000107 NCBI chr 4:94,583,905...94,606,689
Ensembl chr 4:94,584,134...94,609,745 		JBrowse link
G LOC100154081 protein NipSnap homolog 3A involved_in IEA UniProt GO_REF:0000117 NCBI chr 1:246,104,936...246,117,913
Ensembl chr 1:246,104,931...246,117,909 		JBrowse link
G LOC100739365 protein NipSnap homolog 3A-like involved_in IEA UniProt GO_REF:0000117 NCBI chr 1:246,129,422...246,140,407
Ensembl chr 1:246,105,250...246,140,397 		JBrowse link
G LOC102158581 gamma-aminobutyric acid receptor-associated protein pseudogene involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:76,675,741...76,676,338 JBrowse link
G LRBA LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chr 8:77,970,087...78,680,307
Ensembl chr 8:77,970,558...78,680,250 		JBrowse link
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:37,957,830...37,959,505
Ensembl chr17:37,957,507...37,959,505 		JBrowse link
G MAP1LC3B microtubule associated protein 1 light chain 3 beta involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:1,919,879...1,941,069
Ensembl chr 6:1,915,387...1,941,069 		JBrowse link
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:15,371,182...15,379,067
Ensembl chr10:15,372,879...15,379,172 		JBrowse link
G NIPSNAP1 nipsnap homolog 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr14:46,624,368...46,641,453
Ensembl chr14:46,624,727...46,641,438 		JBrowse link
G NIPSNAP2 nipsnap homolog 2 involved_in IEA UniProt GO_REF:0000117 NCBI chr 3:16,910,589...16,941,767
Ensembl chr 3:16,882,643...16,941,739 		JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:57,521,091...57,558,467
Ensembl chr  X:57,521,098...57,558,515 		JBrowse link
G PHB2 prohibitin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:63,751,566...63,756,480
Ensembl chr 5:63,751,558...63,756,478 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IEA
ISO		 Ensembl
RGD		 PMID:25154397 GO_REF:0000107 RGD:12904014 NCBI chr 6:78,863,195...78,884,663
Ensembl chr 6:78,863,190...78,884,640 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24949970) Ensembl
MGI		 PMID:24949970 GO_REF:0000107 NCBI chr 1:5,698,508...6,731,132
Ensembl chr 1:5,465,312...6,730,872 		JBrowse link
G RETREG1 reticulophagy regulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31446166) Ensembl
MGI		 PMID:31446166 GO_REF:0000107 NCBI chr16:5,726,493...5,879,461
Ensembl chr16:5,726,494...5,879,714 		JBrowse link
G RIMOC1 RAB7A interacting MON1-CCZ1 complex subunit 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr16:26,681,637...26,703,719
Ensembl chr16:26,681,716...26,701,443 		JBrowse link
G SNX30 sorting nexin family member 30 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:253,428,461...253,555,463
Ensembl chr 1:253,428,508...253,550,375 		JBrowse link
G SNX7 sorting nexin 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:119,040,986...119,258,507
Ensembl chr 4:119,035,133...119,255,877 		JBrowse link
G SPATA33 spermatogenesis associated 33 involved_in ISO (PMID:33087875) UniProt PMID:33087875 NCBI chr 6:341,276...351,987 JBrowse link
G SQSTM1 sequestosome 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:78,752,768...78,763,998
Ensembl chr 2:78,752,771...78,763,938 		JBrowse link
G TAFAZZIN tafazzin, phospholipid-lysophospholipid transacylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:124,940,036...124,946,275
Ensembl chr  X:124,940,031...124,946,273 		JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chr 5:66,044,679...66,067,571
Ensembl chr 5:66,044,686...66,067,377 		JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,644...52,953,818 		JBrowse link
G TRIM3 tripartite motif containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:3,250,011...3,254,916
Ensembl chr 9:3,249,908...3,266,686 		JBrowse link
G TRIM3 tripartite motif containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:3,256,915...3,281,846
Ensembl chr 9:3,272,798...3,282,366 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:23,423,693...23,448,130
Ensembl chr14:23,423,698...23,448,136 		JBrowse link
G ULK2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:59,806,904...59,878,398
Ensembl chr12:59,806,955...59,878,388 		JBrowse link
G ULK3 unc-51 like kinase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:58,699,989...58,707,191
Ensembl chr 7:58,699,984...58,707,187 		JBrowse link
negative regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC6 histone deacetylase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:42,917,911...42,941,894
Ensembl chr  X:42,917,964...42,941,887 		JBrowse link
G LYPLA1 lysophospholipase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:77,083,624...77,102,407
Ensembl chr 4:77,083,548...77,102,408 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BECN1 beclin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27994061) Ensembl
MGI		 PMID:27994061 GO_REF:0000107 NCBI chr12:20,041,914...20,054,249
Ensembl chr12:20,041,956...20,054,373 		JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23918802) Ensembl
MGI		 PMID:23918802 GO_REF:0000107 NCBI chr 7:23,977,683...23,992,673
Ensembl chr 7:23,977,683...23,992,697 		JBrowse link
G FEZ1 fasciculation and elongation protein zeta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:52,621,175...52,672,660
Ensembl chr 9:52,621,183...52,672,660 		JBrowse link
G FEZ2 fasciculation and elongation protein zeta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:103,566,214...103,612,855
Ensembl chr 3:103,566,228...103,615,769 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:71,800,337...71,945,828
Ensembl chr 5:71,800,225...71,945,828 		JBrowse link
G MTM1 myotubularin 1 acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:23695157) MGI
GO_Central		 PMID:23695157 GO_REF:0000033 NCBI chr  X:122,286,904...122,379,302
Ensembl chr  X:122,286,916...122,379,299 		JBrowse link
G NUPR1 nuclear protein 1, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:18,402,781...18,404,411
Ensembl chr 3:18,402,935...18,511,087 		JBrowse link
G PHF23 PHD finger protein 23 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:52,590,801...52,595,208
Ensembl chr12:52,590,804...52,595,266 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:78,863,195...78,884,663
Ensembl chr 6:78,863,190...78,884,640 		JBrowse link
G SCFD1 sec1 family domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:68,694,579...68,851,055
Ensembl chr 7:68,712,773...68,851,008 		JBrowse link
G SEC22B SEC22 homolog B, vesicle trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:100,880,843...100,900,942
Ensembl chr 4:100,880,937...100,905,993 		JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:60,435,276...60,443,525
Ensembl chr12:60,435,273...60,443,520 		JBrowse link
G TMEM39A transmembrane protein 39A involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr13:140,797,098...140,830,732
Ensembl chr13:140,797,205...140,831,277 		JBrowse link
negative regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLEC16A C-type lectin domain containing 16A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:31,938,133...32,158,343
Ensembl chr 3:31,938,135...32,158,320 		JBrowse link
G PHF23 PHD finger protein 23 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:52,590,801...52,595,208
Ensembl chr12:52,590,804...52,595,266 		JBrowse link
G RUBCN rubicon autophagy regulator involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr13:134,299,971...134,363,620
Ensembl chr13:134,299,152...134,353,374 		JBrowse link
G TMEM39A transmembrane protein 39A involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr13:140,797,098...140,830,732
Ensembl chr13:140,797,205...140,831,277 		JBrowse link
G UBQLN4 ubiquilin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:93,976,386...93,994,830
Ensembl chr 4:93,976,451...93,994,828 		JBrowse link
negative regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMOX1 heme oxygenase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20705711) Ensembl
MGI		 PMID:20705711 GO_REF:0000107
G LRRK2 leucine rich repeat kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:71,800,337...71,945,828
Ensembl chr 5:71,800,225...71,945,828 		JBrowse link
G LZTS1 leucine zipper tumor suppressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:4,344,496...4,404,208
Ensembl chr14:4,346,480...4,404,168 		JBrowse link
G MTOR mechanistic target of rapamycin kinase acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA		 (PMID:25327288)
(PMID:16714284), (PMID:23274896)		 MGI
GO_Central
Ensembl		 PMID:16714284 PMID:23274896 PMID:25327288 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:71,286,989...71,412,913
Ensembl chr 6:71,286,989...71,412,888 		JBrowse link
G NPC1 NPC intracellular cholesterol transporter 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17468177) Ensembl
MGI		 PMID:17468177 GO_REF:0000107 NCBI chr 6:108,403,126...108,450,486
Ensembl chr 6:108,402,879...108,450,990 		JBrowse link
G NRBP2 nuclear receptor binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:800,722...808,031
Ensembl chr 4:800,063...807,174 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:78,863,195...78,884,663
Ensembl chr 6:78,863,190...78,884,640 		JBrowse link
G POLDIP2 DNA polymerase delta interacting protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24797518) Ensembl
MGI		 PMID:24797518 GO_REF:0000107 NCBI chr12:44,626,447...44,636,302
Ensembl chr12:44,625,604...44,636,289 		JBrowse link
G QSOX1 quiescin sulfhydryl oxidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:121,779,072...121,822,829
Ensembl chr 9:121,779,792...121,822,825 		JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:60,435,276...60,443,525
Ensembl chr12:60,435,273...60,443,520 		JBrowse link
G TSC1 TSC complex subunit 1 involved_in ISO PMID:23435171 ParkinsonsUK-UCL PMID:23435171 RGD:10448950 NCBI chr 1:272,636,530...272,685,948
Ensembl chr 1:272,636,532...272,685,951 		JBrowse link
G TSC2 TSC complex subunit 2 ISO RGD PMID:24599401 RGD:11568679 NCBI chr 3:39,898,924...39,935,579
Ensembl chr 3:39,898,925...39,937,371 		JBrowse link
G USP36 ubiquitin specific peptidase 36 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:3,309,176...3,348,531
Ensembl chr12:3,309,237...3,348,525 		JBrowse link
negative regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLEC16A C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chr 3:31,938,133...32,158,343
Ensembl chr 3:31,938,135...32,158,320 		JBrowse link
G FBXL4 F-box and leucine rich repeat protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:65,872,119...65,936,442
Ensembl chr 1:65,872,123...65,935,703 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:78,863,195...78,884,663
Ensembl chr 6:78,863,190...78,884,640 		JBrowse link
G PPTC7 protein phosphatase targeting COQ7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:31,905,379...31,946,555
Ensembl chr14:31,906,262...31,946,554 		JBrowse link
G RNF41 ring finger protein 41 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24949970) Ensembl
MGI		 PMID:24949970 GO_REF:0000107 NCBI chr 5:21,595,703...21,624,589
Ensembl chr 5:21,596,306...21,624,569 		JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chr 5:66,044,679...66,067,571
Ensembl chr 5:66,044,686...66,067,377 		JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,644...52,953,818 		JBrowse link
G TSPO translocator protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:5,723,190...5,735,097
Ensembl chr 5:5,723,190...5,735,131 		JBrowse link
G USP30 ubiquitin specific peptidase 30 ISO RGD PMID:24896179 RGD:13208875 NCBI chr14:41,765,220...41,818,937
Ensembl chr14:41,766,254...41,818,918 		JBrowse link
negative regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HTRA2 HtrA serine peptidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:68,516,666...68,520,025
Ensembl chr 3:68,516,500...68,519,886 		JBrowse link
G VPS13C vacuolar protein sorting 13 homolog C involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:109,931,269...110,105,519
Ensembl chr 1:109,931,264...110,104,241 		JBrowse link
nucleophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG3 autophagy related 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:147,279,110...147,309,597
Ensembl chr13:147,279,437...147,309,590 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:43,150,691...43,155,981
Ensembl chr  X:43,147,477...43,156,234 		JBrowse link
G WDR45B WD repeat domain 45B involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:522,762...547,333
Ensembl chr12:522,829...549,156 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:11,715,332...11,752,009
Ensembl chr12:11,715,318...11,752,021 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:3,800,170...3,830,973
Ensembl chr 3:3,800,186...3,834,413 		JBrowse link
pexophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACBD5 acyl-CoA binding domain containing 5 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr10:48,883,116...48,922,377
Ensembl chr10:48,866,933...48,922,262 		JBrowse link
G ATG2A autophagy related 2A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:7,261,819...7,282,614
Ensembl chr 2:7,262,031...7,282,347 		JBrowse link
G ATG2B autophagy related 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:117,506,298...117,586,651
Ensembl chr 7:117,506,302...117,586,545 		JBrowse link
G ATM ATM serine/threonine kinase involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:36,620,656...36,759,555
Ensembl chr 9:36,620,657...36,759,552 		JBrowse link
G PEX2 peroxisomal biogenesis factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:59,252,330...59,270,117
Ensembl chr 4:59,252,337...59,270,116 		JBrowse link
G PEX5 peroxisomal biogenesis factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:63,542,422...63,562,762
Ensembl chr 5:63,542,431...63,562,849 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:125,890,598...126,038,753
Ensembl chr 6:125,890,712...126,043,157 		JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:1,730,988...1,815,555
Ensembl chr13:1,731,023...1,815,556 		JBrowse link
G PJVK pejvakin involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:84,157,864...84,165,763
Ensembl chr15:84,158,639...84,165,906 		JBrowse link
G RB1CC1 RB1 inducible coiled-coil 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:77,593,204...77,649,551
Ensembl chr 4:77,594,324...77,649,548 		JBrowse link
G SQSTM1 sequestosome 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:78,752,768...78,763,998
Ensembl chr 2:78,752,771...78,763,938 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:43,150,691...43,155,981
Ensembl chr  X:43,147,477...43,156,234 		JBrowse link
G WDR45B WD repeat domain 45B involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:522,762...547,333
Ensembl chr12:522,829...549,156 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:11,715,332...11,752,009
Ensembl chr12:11,715,318...11,752,021 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:3,800,170...3,830,973
Ensembl chr 3:3,800,186...3,834,413 		JBrowse link
piecemeal microautophagy of the nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG12 autophagy related 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:119,948,443...119,965,702
Ensembl chr 2:119,941,997...119,965,696 		JBrowse link
G ATG13 autophagy related 13 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:15,856,859...15,916,122
Ensembl chr 2:15,856,860...15,916,109 		JBrowse link
G ATG2A autophagy related 2A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:7,261,819...7,282,614
Ensembl chr 2:7,262,031...7,282,347 		JBrowse link
G ATG2B autophagy related 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:117,506,298...117,586,651
Ensembl chr 7:117,506,302...117,586,545 		JBrowse link
G ATG4A autophagy related 4A cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:88,545,924...88,633,328
Ensembl chr  X:88,548,751...88,633,321 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:140,223,903...140,245,590
Ensembl chr15:140,223,904...140,246,321 		JBrowse link
G ATG4C autophagy related 4C cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:149,560,318...149,691,959
Ensembl chr 6:149,608,220...149,692,153 		JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:69,320,313...69,328,522
Ensembl chr 2:69,320,331...69,328,519 		JBrowse link
G ATG5 autophagy related 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:72,343,950...72,520,402
Ensembl chr 1:72,270,799...72,520,396 		JBrowse link
G ATG7 autophagy related 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:67,301,756...67,699,141
Ensembl chr13:67,417,938...67,707,654 		JBrowse link
G ATG9A autophagy related 9A involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:121,254,355...121,265,564
Ensembl chr15:121,254,355...121,265,569 		JBrowse link
G ATG9B autophagy related 9B involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:6,200,246...6,208,988
Ensembl chr18:6,200,639...6,208,286 		JBrowse link
G RB1CC1 RB1 inducible coiled-coil 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:77,593,204...77,649,551
Ensembl chr 4:77,594,324...77,649,548 		JBrowse link
G SNX30 sorting nexin family member 30 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:253,428,461...253,555,463
Ensembl chr 1:253,428,508...253,550,375 		JBrowse link
G SNX7 sorting nexin 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:119,040,986...119,258,507
Ensembl chr 4:119,035,133...119,255,877 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:23,423,693...23,448,130
Ensembl chr14:23,423,698...23,448,136 		JBrowse link
G ULK2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:59,806,904...59,878,398
Ensembl chr12:59,806,955...59,878,388 		JBrowse link
G ULK3 unc-51 like kinase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:58,699,989...58,707,191
Ensembl chr 7:58,699,984...58,707,187 		JBrowse link
positive regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAG3 BAG cochaperone 3 involved_in ISO (PMID:18006506) ARUK-UCL PMID:18006506 NCBI chr14:129,510,240...129,533,998
Ensembl chr14:129,466,905...129,533,993 		JBrowse link
G CSNK2A1 casein kinase 2 alpha 1 involved_in ISO (PMID:22017874) UniProt PMID:22017874 NCBI chr17:34,692,960...34,748,067 JBrowse link
G HSPB8 heat shock protein family B (small) member 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:33,626,125...33,639,824
Ensembl chr14:33,626,120...33,640,792 		JBrowse link
G HTT huntingtin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:1,809,768...1,934,002
Ensembl chr 8:1,809,785...1,934,024 		JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:6,560,544...6,572,461
Ensembl chr 2:6,560,513...6,572,466 		JBrowse link
G ZDHHC19 zinc finger DHHC-type palmitoyltransferase 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:133,873,072...133,886,202
Ensembl chr13:133,875,309...133,885,763 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG2A autophagy related 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:7,261,819...7,282,614
Ensembl chr 2:7,262,031...7,282,347 		JBrowse link
G ATG7 autophagy related 7 ISO RGD PMID:33372336 RGD:407571673 NCBI chr13:67,301,756...67,699,141
Ensembl chr13:67,417,938...67,707,654 		JBrowse link
G BECN1 beclin 1 ISO RGD PMID:25561470 RGD:11561937 NCBI chr12:20,041,914...20,054,249
Ensembl chr12:20,041,956...20,054,373 		JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:110,881,770...110,954,092
Ensembl chr 4:110,881,768...110,953,967 		JBrowse link
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:267,964,875...268,008,833
Ensembl chr 1:267,964,928...268,008,825 		JBrowse link
G MOAP1 modulator of apoptosis 1 involved_in ISO (PMID:33783314) UniProt PMID:33783314 NCBI chr 7:114,571,624...114,574,052 JBrowse link
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:52,224,367...52,408,928
Ensembl chr10:52,224,389...52,408,922 		JBrowse link
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:23,317,113...23,345,661
Ensembl chr12:23,317,208...23,346,424 		JBrowse link
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:22,854,142...22,867,032
Ensembl chr 5:22,854,316...22,867,028 		JBrowse link
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr15:16,756,368...16,893,148
Ensembl chr15:16,763,990...16,816,754 		JBrowse link
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:9,734,766...9,828,330
Ensembl chr10:9,734,768...9,828,525 		JBrowse link
G RALB RAS like proto-oncogene B involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:31,064,341...31,118,437
Ensembl chr15:31,064,355...31,122,621 		JBrowse link
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:129,361,596...129,395,790
Ensembl chr 4:129,357,552...129,395,583 		JBrowse link
G SNX18 sorting nexin 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:33,776,964...33,801,391
Ensembl chr16:33,776,746...33,847,624 		JBrowse link
G SNX30 sorting nexin family member 30 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:253,428,461...253,555,463
Ensembl chr 1:253,428,508...253,550,375 		JBrowse link
G SNX4 sorting nexin 4 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr13:134,824,028...134,903,765
Ensembl chr13:134,824,043...134,905,359 		JBrowse link
G SNX7 sorting nexin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:119,040,986...119,258,507
Ensembl chr 4:119,035,133...119,255,877 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:257,051,421...257,066,911
Ensembl chr 1:257,054,228...257,066,909 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 ISO RGD PMID:23448468 RGD:13208863 NCBI chr14:23,423,693...23,448,130
Ensembl chr14:23,423,698...23,448,136 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:43,150,691...43,155,981
Ensembl chr  X:43,147,477...43,156,234 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:11,715,332...11,752,009
Ensembl chr12:11,715,318...11,752,021 		JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADRB2 adrenoceptor beta 2 involved_in IEA
ISS		 Ensembl
GO_Central		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:150,032,649...150,035,591
Ensembl chr 2:150,033,579...150,040,731 		JBrowse link
G CALCOCO2 calcium binding and coiled-coil domain 2 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:25,050,008...25,080,230
Ensembl chr12:25,050,081...25,088,895 		JBrowse link
G CLEC16A C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chr 3:31,938,133...32,158,343
Ensembl chr 3:31,938,135...32,158,320 		JBrowse link
G FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:29,068,107...29,146,792
Ensembl chr13:29,066,986...29,146,755 		JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:60,435,276...60,443,525
Ensembl chr12:60,435,273...60,443,520 		JBrowse link
G TOM1 target of myb1 membrane trafficking protein involved_in IEA Ensembl GO_REF:0000107
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELAVL1 ELAV like RNA binding protein 1 ISO RGD PMID:33372336 RGD:407571673 NCBI chr 2:71,207,141...71,245,863
Ensembl chr 2:71,207,096...71,248,906 		JBrowse link
positive regulation of autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZNRF1 zinc and ring finger 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:12,555,655...12,668,807 JBrowse link
G ZNRF1 zinc and ring finger 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 6:12,555,664...12,668,804 JBrowse link
G ZNRF2 zinc and ring finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:42,550,571...42,651,914
Ensembl chr18:42,549,846...42,651,807 		JBrowse link
positive regulation of lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADRB2 adrenoceptor beta 2 involved_in ISS
IEA		 GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:150,032,649...150,035,591
Ensembl chr 2:150,033,579...150,040,731 		JBrowse link
G HTT huntingtin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:1,809,768...1,934,002
Ensembl chr 8:1,809,785...1,934,024 		JBrowse link
G SESN2 sestrin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22958918) Ensembl
MGI		 PMID:22958918 GO_REF:0000107 NCBI chr 6:85,321,982...85,348,044
Ensembl chr 6:85,324,228...85,348,032 		JBrowse link
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25332431) MGI
Ensembl		 PMID:25332431 GO_REF:0000107 NCBI chr14:3,081,964...3,138,113
Ensembl chr14:3,081,972...3,138,103 		JBrowse link
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25332431) MGI
Ensembl		 PMID:25332431 GO_REF:0000107 NCBI chr 7:100,545,360...100,638,973
Ensembl chr 7:100,544,478...100,638,905 		JBrowse link
positive regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BNIP3 BCL2 interacting protein 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19273585) MGI
Ensembl		 PMID:19273585 GO_REF:0000107 NCBI chr14:140,362,123...140,371,951
Ensembl chr14:140,362,127...140,371,907 		JBrowse link
G BNIP3L BCL2 interacting protein 3 like acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19273585) MGI
Ensembl		 PMID:19273585 GO_REF:0000107 NCBI chr14:10,318,688...10,345,689
Ensembl chr14:10,318,732...10,345,679 		JBrowse link
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:38,389,366...38,415,903
Ensembl chr10:38,389,331...38,415,901 		JBrowse link
G DCN decorin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23798385) MGI
Ensembl		 PMID:23798385 GO_REF:0000107 NCBI chr 5:91,678,601...91,713,925
Ensembl chr 5:91,682,658...91,714,235 		JBrowse link
G FBXO30 F-box protein 30 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20453062) Ensembl
MGI		 PMID:20453062 GO_REF:0000107 NCBI chr 1:19,806,363...19,893,350
Ensembl chr 1:19,806,765...19,893,339 		JBrowse link
G GNAI3 G protein subunit alpha i3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:110,527,363...110,579,331
Ensembl chr 4:110,525,546...110,579,053 		JBrowse link
G GPSM1 G protein signaling modulator 1 involved_in ISO (PMID:12642577) UniProt PMID:12642577
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19273585) Ensembl
MGI		 PMID:19273585 GO_REF:0000107 NCBI chr 1:190,625,436...190,673,926
Ensembl chr 1:190,625,244...190,674,845 		JBrowse link
G HMOX1 heme oxygenase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20705711) Ensembl
MGI		 PMID:20705711 GO_REF:0000107
G IKBKG inhibitor of nuclear factor kappa B kinase regulatory subunit gamma involved_in ISO (PMID:23778976) ParkinsonsUK-UCL PMID:23778976 NCBI chr  X:125,035,575...125,056,445
Ensembl chr  X:125,036,508...125,056,453 		JBrowse link
G IL4 interleukin 4 involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:134,986,817...134,994,365
Ensembl chr 2:134,986,817...134,994,365 		JBrowse link
G KDR kinase insert domain receptor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23798385) MGI
Ensembl		 PMID:23798385 GO_REF:0000107 NCBI chr 8:41,809,116...41,856,379
Ensembl chr 8:41,809,122...41,856,336 		JBrowse link
G LARP1 La ribonucleoprotein 1, translational regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:68,390,879...68,451,605
Ensembl chr16:68,390,880...68,484,918 		JBrowse link
G MAP3K7 mitogen-activated protein kinase kinase kinase 7 involved_in ISO (PMID:23778976) ParkinsonsUK-UCL PMID:23778976 NCBI chr 1:58,482,046...58,548,087
Ensembl chr 1:58,481,956...58,548,057 		JBrowse link
G PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:44,513,114...44,534,312
Ensembl chr 9:44,513,461...44,536,432 		JBrowse link
G PIM2 Pim-2 proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17476689) Ensembl
MGI		 PMID:17476689 GO_REF:0000107 NCBI chr  X:42,993,547...42,998,575
Ensembl chr  X:42,993,551...42,998,573 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:78,863,195...78,884,663
Ensembl chr 6:78,863,190...78,884,640 		JBrowse link
G RAB12 RAB12, member RAS oncogene family involved_in ISO (PMID:23357852) UniProt PMID:23357852 NCBI chr 6:99,216,225...99,244,627
Ensembl chr 6:99,216,228...99,244,868 		JBrowse link
G RUFY4 RUN and FYVE domain containing 4 involved_in IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr15:120,193,657...120,213,625
Ensembl chr15:120,192,235...120,213,462 		JBrowse link
G SCOC short coiled-coil protein involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr 8:86,680,782...86,690,691
Ensembl chr 8:86,679,843...86,690,676 		JBrowse link
G SESN1 sestrin 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:75,056,731...75,170,374
Ensembl chr 1:75,056,734...75,088,954 		JBrowse link
G SESN2 sestrin 2 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:85,321,982...85,348,044
Ensembl chr 6:85,324,228...85,348,032 		JBrowse link
G SESN3 sestrin 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:27,207,239...27,279,205
Ensembl chr 9:27,207,236...27,298,628 		JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,167...71,123,297 		JBrowse link
G STING1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:141,359,402...141,367,222
Ensembl chr 2:141,358,993...141,367,198 		JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:48,095,001...48,125,120
Ensembl chr 6:48,095,041...48,125,119 		JBrowse link
G TBK1 TANK binding kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:28,880,210...28,929,964
Ensembl chr 5:28,880,205...28,929,963 		JBrowse link
G TRIM13 tripartite motif containing 13 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr11:17,785,031...17,850,005
Ensembl chr11:17,793,784...17,849,732 		JBrowse link
G TSC1 TSC complex subunit 1 ISO RGD PMID:23435171 RGD:10448950 NCBI chr 1:272,636,530...272,685,948
Ensembl chr 1:272,636,532...272,685,951 		JBrowse link
G TSC2 TSC complex subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20453062) Ensembl
MGI		 PMID:20453062 GO_REF:0000107 NCBI chr 3:39,898,924...39,935,579
Ensembl chr 3:39,898,925...39,937,371 		JBrowse link
G WAC WW domain containing adaptor with coiled-coil involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:39,932,562...40,024,114
Ensembl chr10:39,932,599...40,022,338 		JBrowse link
G WDR24 WD repeat domain 24 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:41,085,415...41,090,628
Ensembl chr 3:41,085,463...41,090,610 		JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:15,935,354...16,119,082
Ensembl chr 2:15,935,375...16,119,079 		JBrowse link
G ATG7 autophagy related 7 ISO RGD PMID:37042059 RGD:407532700 NCBI chr13:67,301,756...67,699,141
Ensembl chr13:67,417,938...67,707,654 		JBrowse link
G DELE1 DAP3 binding cell death enhancer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:143,527,865...143,545,862
Ensembl chr 2:143,529,988...143,545,856 		JBrowse link
G EIF2AK1 eukaryotic translation initiation factor 2 alpha kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:5,075,026...5,113,390
Ensembl chr 3:5,075,054...5,113,622 		JBrowse link
G FBXO7 F-box protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:12,505,646...12,526,206
Ensembl chr 5:12,505,654...12,526,232 		JBrowse link
G GDF1 growth differentiation factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:58,951,463...58,972,692
Ensembl chr 2:58,951,727...58,974,670 		JBrowse link
G HTT huntingtin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:1,809,768...1,934,002
Ensembl chr 8:1,809,785...1,934,024 		JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:34,132,127...34,167,446
Ensembl chr 6:34,130,938...34,177,534 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in ISO
IEA		 RGD
Ensembl		 PMID:28608965 GO_REF:0000107 RGD:13432560 NCBI chr 1:5,698,508...6,731,132
Ensembl chr 1:5,465,312...6,730,872 		JBrowse link
G SLC25A4 solute carrier family 25 member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:46,193,498...46,197,989
Ensembl chr15:46,193,746...46,200,987 		JBrowse link
G SLC25A5 solute carrier family 25 member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:97,919,295...97,922,245
Ensembl chr  X:97,919,290...97,922,239 		JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 involved_in ISO PMID:29934347 UniProt PMID:29934347 RGD:405650300 NCBI chr 3:41,092,514...41,095,181
Ensembl chr 3:41,092,449...41,095,136 		JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:97,925,136...98,007,551
Ensembl chr  X:97,925,131...98,012,278 		JBrowse link
G VPS13D vacuolar protein sorting 13 homolog D involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:72,256,865...72,514,256
Ensembl chr 6:72,256,828...72,510,058 		JBrowse link
positive regulation of reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK5RAP3 CDK5 regulatory subunit associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:24,224,262...24,234,468
Ensembl chr12:24,224,263...24,234,467 		JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:32,479,981...32,491,401
Ensembl chr17:32,479,977...32,491,396 		JBrowse link
G UFL1 UFM1 specific ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:63,638,589...63,698,931
Ensembl chr 1:63,638,596...63,700,476 		JBrowse link
positive regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP5IF1 ATP synthase inhibitory factor subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:85,307,242...85,309,211
Ensembl chr 6:85,307,189...85,309,215 		JBrowse link
G CDC37 cell division cycle 37, HSP90 cochaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:69,202,695...69,212,909
Ensembl chr 2:69,201,579...69,225,994 		JBrowse link
G GBA1 glucosylceramidase beta 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23707074) ARUK-UCL
Ensembl		 PMID:23707074 GO_REF:0000107 NCBI chr 4:94,583,905...94,606,689
Ensembl chr 4:94,584,134...94,609,745 		JBrowse link
G HDAC6 histone deacetylase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:42,917,911...42,941,894
Ensembl chr  X:42,917,964...42,941,887 		JBrowse link
G HK2 hexokinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:68,155,656...68,231,187
Ensembl chr 3:68,153,835...68,231,615 		JBrowse link
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:46,281,958...46,444,315
Ensembl chr  X:46,281,967...46,444,228 		JBrowse link
G MUL1 mitochondrial E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:78,747,687...78,758,821
Ensembl chr 6:78,747,650...78,758,812 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:78,863,195...78,884,663
Ensembl chr 6:78,863,190...78,884,640 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:5,698,508...6,731,132
Ensembl chr 1:5,465,312...6,730,872 		JBrowse link
G TOMM7 translocase of outer mitochondrial membrane 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:91,570,069...91,578,991
Ensembl chr 9:91,570,065...91,579,015 		JBrowse link
G VDAC1 voltage dependent anion channel 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:136,302,188...136,334,461
Ensembl chr 2:136,302,191...136,396,301 		JBrowse link
positive regulation of xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:267,964,875...268,008,833
Ensembl chr 1:267,964,928...268,008,825 		JBrowse link
G MAPK3 mitogen-activated protein kinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chr 3:18,291,444...18,299,410
Ensembl chr 3:18,291,445...18,299,567 		JBrowse link
G NOD1 nucleotide binding oligomerization domain containing 1 acts_upstream_of_or_within ISO (PMID:22033934) MGI PMID:22033934 NCBI chr18:42,464,667...42,509,135
Ensembl chr18:42,432,050...42,512,264 		JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chr 6:34,132,127...34,167,446
Ensembl chr 6:34,130,938...34,177,534 		JBrowse link
G OPTN optineurin involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:48,532,029...48,582,952
Ensembl chr10:48,530,843...48,582,860 		JBrowse link
G RIPK2 receptor interacting serine/threonine kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chr 4:47,026,558...47,075,133
Ensembl chr 4:47,027,098...47,074,704 		JBrowse link
G RNF31 ring finger protein 31 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 7:75,140,207...75,158,905 JBrowse link
G TBK1 TANK binding kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:28,880,210...28,929,964
Ensembl chr 5:28,880,205...28,929,963 		JBrowse link
G TLR2 toll like receptor 2 acts_upstream_of_or_within ISO (PMID:22033934) MGI PMID:22033934 NCBI chr 8:75,416,257...75,428,370
Ensembl chr 8:75,411,993...75,428,330 		JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG16L1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chr15:133,651,294...133,693,472
Ensembl chr15:133,651,298...133,693,468 		JBrowse link
G ATG5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) MGI PMID:23918802 NCBI chr 1:72,343,950...72,520,402
Ensembl chr 1:72,270,799...72,520,396 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chr 3:3,800,170...3,830,973
Ensembl chr 3:3,800,186...3,834,413 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG13 autophagy related 13 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:15,856,859...15,916,122
Ensembl chr 2:15,856,860...15,916,109 		JBrowse link
G ATG16L1 autophagy related 16 like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24954904) Ensembl
MGI		 PMID:24954904 GO_REF:0000107 NCBI chr15:133,651,294...133,693,472
Ensembl chr15:133,651,298...133,693,468 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:140,223,903...140,245,590
Ensembl chr15:140,223,904...140,246,321 		JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:69,320,313...69,328,522
Ensembl chr 2:69,320,331...69,328,519 		JBrowse link
G ATG9A autophagy related 9A involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:121,254,355...121,265,564
Ensembl chr15:121,254,355...121,265,569 		JBrowse link
G ATG9B autophagy related 9B involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:6,200,246...6,208,988
Ensembl chr18:6,200,639...6,208,286 		JBrowse link
G LRBA LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chr 8:77,970,087...78,680,307
Ensembl chr 8:77,970,558...78,680,250 		JBrowse link
G MFN2 mitofusin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23455425) MGI
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chr 6:72,026,512...72,056,439
Ensembl chr 6:72,028,499...72,056,438 		JBrowse link
G PACS2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23455425) MGI
Ensembl		 PMID:23455425 GO_REF:0000107
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24098492) Ensembl
MGI		 PMID:24098492 GO_REF:0000107 NCBI chr 6:125,890,598...126,038,753
Ensembl chr 6:125,890,712...126,043,157 		JBrowse link
G STX17 syntaxin 17 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23455425) MGI
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chr 1:241,657,463...241,785,270
Ensembl chr 1:241,657,506...241,765,783 		JBrowse link
G TRIM3 tripartite motif containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:3,250,011...3,254,916
Ensembl chr 9:3,249,908...3,266,686 		JBrowse link
G TRIM3 tripartite motif containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:3,256,915...3,281,846
Ensembl chr 9:3,272,798...3,282,366 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:43,150,691...43,155,981
Ensembl chr  X:43,147,477...43,156,234 		JBrowse link
G WDR45B WD repeat domain 45B involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:522,762...547,333
Ensembl chr12:522,829...549,156 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:11,715,332...11,752,009
Ensembl chr12:11,715,318...11,752,021 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:24954904) Ensembl
MGI
GO_Central		 PMID:24954904 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:3,800,170...3,830,973
Ensembl chr 3:3,800,186...3,834,413 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:38,389,366...38,415,903
Ensembl chr10:38,389,331...38,415,901 		JBrowse link
G CHEK2 checkpoint kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:45,699,833...45,967,350
Ensembl chr14:45,929,715...45,967,290 		JBrowse link
G EFNB1 ephrin B1 involved_in
acts_upstream_of_positive_effect		 IEA
ISO		 (PMID:33280498) Ensembl
UniProt		 PMID:33280498 GO_REF:0000107 NCBI chr  X:54,947,339...54,961,403
Ensembl chr  X:54,948,342...54,973,629 		JBrowse link
G EPHB2 EPH receptor B2 involved_in
acts_upstream_of_positive_effect		 IEA
ISO		 (PMID:33280498) Ensembl
UniProt		 PMID:33280498 GO_REF:0000107 NCBI chr 6:80,649,098...80,849,979
Ensembl chr 6:80,650,740...80,843,567 		JBrowse link
G IFT20 intraflagellar transport 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:44,609,586...44,616,685
Ensembl chr12:44,609,508...44,616,655 		JBrowse link
G IFT88 intraflagellar transport 88 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chr11:943,444...1,025,617
Ensembl chr11:943,469...1,025,613 		JBrowse link
G KLC2 kinesin light chain 2 involved_in ISO (PMID:20545908) UniProt PMID:20545908 NCBI chr 2:6,110,438...6,116,443
Ensembl chr 2:6,102,354...6,116,221 		JBrowse link
G LOC110258247 TBC1 domain family member 14-like involved_in IBA GO_Central GO_REF:0000033
G MTMR3 myotubularin related protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:46,874,977...47,022,581
Ensembl chr14:46,875,050...47,023,487 		JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:71,286,989...71,412,913
Ensembl chr 6:71,286,989...71,412,888 		JBrowse link
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:111,372,148...111,468,720
Ensembl chr15:111,372,173...111,467,899 		JBrowse link
G RNF186 ring finger protein 186 acts_upstream_of_positive_effect ISO (PMID:33280498) UniProt PMID:33280498 NCBI chr 6:78,195,692...78,199,058
Ensembl chr 6:78,192,337...78,198,597 		JBrowse link
G RNF5 ring finger protein 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23093945) Ensembl
MGI		 PMID:23093945 GO_REF:0000107 NCBI chr 7:24,215,493...24,217,983
Ensembl chr 7:24,215,704...24,217,971 		JBrowse link
G TBC1D12 TBC1 domain family member 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:105,806,384...105,919,986
Ensembl chr14:105,829,858...105,920,886 		JBrowse link
G TBC1D14 TBC1 domain family member 14 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:3,833,314...3,918,783
Ensembl chr 8:3,833,317...3,929,059 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:48,948,062...48,951,392
Ensembl chr  X:48,948,389...48,950,263 		JBrowse link
regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG12 autophagy related 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:119,948,443...119,965,702
Ensembl chr 2:119,941,997...119,965,696 		JBrowse link
G ATG5 autophagy related 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:72,343,950...72,520,402
Ensembl chr 1:72,270,799...72,520,396 		JBrowse link
G CLEC16A C-type lectin domain containing 16A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:31,938,133...32,158,343
Ensembl chr 3:31,938,135...32,158,320 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:18,433,564...18,450,296
Ensembl chr 3:18,433,836...18,450,290 		JBrowse link
G TBC1D25 TBC1 domain family member 25 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:42,682,267...42,696,579
Ensembl chr  X:42,682,269...42,696,574 		JBrowse link
G TECPR1 tectonin beta-propeller repeat containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:5,414,071...5,442,953
Ensembl chr 3:5,414,074...5,442,943 		JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP13A2 ATPase cation transporting 13A2 involved_in ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:22186024 GO_REF:0000033 GO_REF:0000107 RGD:13442482 NCBI chr 6:75,618,317...75,638,591
Ensembl chr 6:75,618,319...75,638,591 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:18,433,564...18,450,296
Ensembl chr 3:18,433,836...18,450,290 		JBrowse link
G DNAJC16 DnaJ heat shock protein family (Hsp40) member C16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:74,732,130...74,771,404
Ensembl chr 6:74,732,169...74,774,311 		JBrowse link
regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG14 autophagy related 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:184,701,020...184,743,752
Ensembl chr 1:184,686,142...184,743,706 		JBrowse link
G ATP13A2 ATPase cation transporting 13A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:75,618,317...75,638,591
Ensembl chr 6:75,618,319...75,638,591 		JBrowse link
G ATP6V0A1 ATPase H+ transporting V0 subunit a1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:20,288,409...20,344,142
Ensembl chr12:20,288,411...20,344,127 		JBrowse link
G BECN1 beclin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:20,041,914...20,054,249
Ensembl chr12:20,041,956...20,054,373 		JBrowse link
G HDAC6 histone deacetylase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:42,917,911...42,941,894
Ensembl chr  X:42,917,964...42,941,887 		JBrowse link
G MTMR8 myotubularin related protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:50,931,199...51,077,796
Ensembl chr  X:50,935,136...51,077,766 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:125,890,598...126,038,753
Ensembl chr 6:125,890,712...126,043,157 		JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:1,730,988...1,815,555
Ensembl chr13:1,731,023...1,815,556 		JBrowse link
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:155,683,392...155,754,283
Ensembl chr 6:155,681,784...155,754,278 		JBrowse link
G UBQLN1 ubiquilin 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:31,275,916...31,317,521
Ensembl chr10:31,275,868...31,317,516 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:48,948,062...48,951,392
Ensembl chr  X:48,948,389...48,950,263 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:23,423,693...23,448,130
Ensembl chr14:23,423,698...23,448,136 		JBrowse link
regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADCY10 adenylate cyclase 10 ISO RGD PMID:31172217 RGD:329403053 NCBI chr 4:83,103,768...83,205,015
Ensembl chr 4:83,098,290...83,205,454 		JBrowse link
G BNIP3L BCL2 interacting protein 3 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:10,318,688...10,345,689
Ensembl chr14:10,318,732...10,345,679 		JBrowse link
G CSNK2A2 casein kinase 2 alpha 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 6:19,975,030...20,016,768
Ensembl chr 6:19,976,930...20,016,923 		JBrowse link
G CTTN cortactin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:3,031,103...3,060,796
Ensembl chr 2:3,031,103...3,060,813 		JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:76,482,027...76,699,354
Ensembl chr 8:76,482,844...76,699,348 		JBrowse link
G FGD4 FYVE, RhoGEF and PH domain containing 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:41,571,054...41,636,058
Ensembl chr 5:41,570,282...41,636,028 		JBrowse link
G FKBP8 FKBP prolyl isomerase 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:59,256,546...59,267,171
Ensembl chr 2:59,253,342...59,267,165 		JBrowse link
G FZD5 frizzled class receptor 5 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr15:110,913,990...110,921,388
Ensembl chr15:110,914,009...110,921,353 		JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:49,690,319...49,700,735
Ensembl chr 6:49,690,370...49,701,189 		JBrowse link
G PARL presenilin associated rhomboid like involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:121,758,734...121,813,679
Ensembl chr13:121,758,738...121,813,638 		JBrowse link
G SREBF1 sterol regulatory element binding transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:60,733,967...60,750,951
Ensembl chr12:60,733,907...60,751,267 		JBrowse link
G SREBF2 sterol regulatory element binding transcription factor 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 5:6,719,484...6,784,724
Ensembl chr 5:6,719,490...6,784,671 		JBrowse link
G USP36 ubiquitin specific peptidase 36 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr12:3,309,176...3,348,531
Ensembl chr12:3,309,237...3,348,525 		JBrowse link
G VDAC1 voltage dependent anion channel 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:136,302,188...136,334,461
Ensembl chr 2:136,302,191...136,396,301 		JBrowse link
reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG2A autophagy related 2A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:7,261,819...7,282,614
Ensembl chr 2:7,262,031...7,282,347 		JBrowse link
G ATG2B autophagy related 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:117,506,298...117,586,651
Ensembl chr 7:117,506,302...117,586,545 		JBrowse link
G ATG9A autophagy related 9A involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:121,254,355...121,265,564
Ensembl chr15:121,254,355...121,265,569 		JBrowse link
G ATG9B autophagy related 9B involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:6,200,246...6,208,988
Ensembl chr18:6,200,639...6,208,286 		JBrowse link
G BNIP3 BCL2 interacting protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:140,362,123...140,371,951
Ensembl chr14:140,362,127...140,371,907 		JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:32,479,981...32,491,401
Ensembl chr17:32,479,977...32,491,396 		JBrowse link
G RB1CC1 RB1 inducible coiled-coil 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:31006538) Ensembl
MGI
GO_Central		 PMID:31006538 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:77,593,204...77,649,551
Ensembl chr 4:77,594,324...77,649,548 		JBrowse link
G RETREG1 reticulophagy regulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:34338405) Ensembl
MGI
GO_Central
InterPro		 PMID:34338405 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr16:5,726,493...5,879,461
Ensembl chr16:5,726,494...5,879,714 		JBrowse link
G RETREG2 reticulophagy regulator family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:34338405) Ensembl
MGI		 PMID:34338405 GO_REF:0000107 NCBI chr15:121,212,370...121,218,796
Ensembl chr15:121,212,881...121,218,812 		JBrowse link
G RETREG3 reticulophagy regulator family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:34338405) Ensembl
MGI
InterPro		 PMID:34338405 GO_REF:0000002 GO_REF:0000107 NCBI chr12:20,220,993...20,243,299
Ensembl chr12:20,179,078...20,243,293 		JBrowse link
G SNX30 sorting nexin family member 30 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:253,428,461...253,555,463
Ensembl chr 1:253,428,508...253,550,375 		JBrowse link
G SNX7 sorting nexin 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:119,040,986...119,258,507
Ensembl chr 4:119,035,133...119,255,877 		JBrowse link
G STING1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:141,359,402...141,367,222
Ensembl chr 2:141,358,993...141,367,198 		JBrowse link
G TEX264 testis expressed 264, ER-phagy receptor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:31006538) MGI
Ensembl		 PMID:31006538 GO_REF:0000107 NCBI chr13:33,892,557...33,924,175
Ensembl chr13:33,897,638...33,924,177 		JBrowse link
G UBA5 ubiquitin like modifier activating enzyme 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:73,831,485...73,859,781
Ensembl chr13:73,822,920...73,868,423 		JBrowse link
G UFC1 ubiquitin-fold modifier conjugating enzyme 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:89,296,281...89,311,331
Ensembl chr 4:89,296,282...89,302,941 		JBrowse link
G UFL1 UFM1 specific ligase 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:63,638,589...63,698,931
Ensembl chr 1:63,638,596...63,700,476 		JBrowse link
G UFM1 ubiquitin fold modifier 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr11:13,516,814...13,779,446
Ensembl chr11:13,765,497...13,774,294 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:23,423,693...23,448,130
Ensembl chr14:23,423,698...23,448,136 		JBrowse link
G ULK2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:59,806,904...59,878,398
Ensembl chr12:59,806,955...59,878,388 		JBrowse link
G ULK3 unc-51 like kinase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:58,699,989...58,707,191
Ensembl chr 7:58,699,984...58,707,187 		JBrowse link
ribophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARMC3 armadillo repeat containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:51,959,571...52,050,071
Ensembl chr10:51,959,610...52,049,425 		JBrowse link
G RB1CC1 RB1 inducible coiled-coil 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:77,593,204...77,649,551
Ensembl chr 4:77,594,324...77,649,548 		JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IRGQ immunity related GTPase Q involved_in ISO (PMID:39481378) UniProt PMID:39481378 NCBI chr 6:50,433,858...50,442,106
Ensembl chr 6:50,433,862...50,445,575 		JBrowse link
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:6,037,732...6,142,569
Ensembl chr 3:6,037,741...6,142,575 		JBrowse link
G STBD1 starch binding domain 1 involved_in ISO (PMID:20810658)
(PMID:27358407)		 MGI PMID:20810658 PMID:27358407 NCBI chr 8:71,982,987...71,987,880 JBrowse link
G TOM1 target of myb1 membrane trafficking protein involved_in IEA Ensembl GO_REF:0000107
type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC6 histone deacetylase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:42,917,911...42,941,894
Ensembl chr  X:42,917,964...42,941,887 		JBrowse link
G LOC100157391 mitochondrial import inner membrane translocase subunit Tim23 involved_in ISO (PMID:37160114) UniProt PMID:37160114 NCBI chr14:90,480,955...90,506,134
Ensembl chr14:90,481,070...90,506,642 		JBrowse link
G MFN2 mitofusin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:72,026,512...72,056,439
Ensembl chr 6:72,028,499...72,056,438 		JBrowse link
G OPTN optineurin involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:48,532,029...48,582,952
Ensembl chr10:48,530,843...48,582,860 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:5,698,508...6,731,132
Ensembl chr 1:5,465,312...6,730,872 		JBrowse link
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chr 3:6,037,732...6,142,569
Ensembl chr 3:6,037,741...6,142,575 		JBrowse link
xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG16L1 autophagy related 16 like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24954904) Ensembl
MGI		 PMID:24954904 GO_REF:0000107 NCBI chr15:133,651,294...133,693,472
Ensembl chr15:133,651,298...133,693,468 		JBrowse link
G CALCOCO2 calcium binding and coiled-coil domain 2 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:25,050,008...25,080,230
Ensembl chr12:25,050,081...25,088,895 		JBrowse link
G LGALS8 galectin 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:54,867,014...54,892,188
Ensembl chr14:54,867,021...54,892,049 		JBrowse link
G MAPK3 mitogen-activated protein kinase 3 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chr 3:18,291,444...18,299,410
Ensembl chr 3:18,291,445...18,299,567 		JBrowse link
G NOD1 nucleotide binding oligomerization domain containing 1 acts_upstream_of ISO (PMID:22033934) MGI PMID:22033934 NCBI chr18:42,464,667...42,509,135
Ensembl chr18:42,432,050...42,512,264 		JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chr 6:34,132,127...34,167,446
Ensembl chr 6:34,130,938...34,177,534 		JBrowse link
G RIPK2 receptor interacting serine/threonine kinase 2 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chr 4:47,026,558...47,075,133
Ensembl chr 4:47,027,098...47,074,704 		JBrowse link
G TLR2 toll like receptor 2 acts_upstream_of ISO (PMID:22033934) MGI PMID:22033934 NCBI chr 8:75,416,257...75,428,370
Ensembl chr 8:75,411,993...75,428,330 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24954904) Ensembl
MGI		 PMID:24954904 GO_REF:0000107 NCBI chr 3:3,800,170...3,830,973
Ensembl chr 3:3,800,186...3,834,413 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18933
    cellular process 18475
      process utilizing autophagic mechanism 520
        autophagy 520
          macroautophagy 323
            aggrephagy + 18
            amphisome-lysosome fusion 0
            autophagosome maturation + 66
            autophagosome organization + 127
            autophagosome-endosome fusion 1
            autophagosome-lysosome fusion + 13
            glycophagy 12
            lipophagy + 8
            lysophagy 0
            mitophagy + 96
            negative regulation of macroautophagy + 37
            nucleophagy + 23
            pexophagy 15
            positive regulation of macroautophagy + 97
            proteaphagy 0
            regulation of macroautophagy + 151
            reticulophagy + 22
            ribophagy 2
            xenophagy + 13
Path 2
Term Annotations click to browse term
  biological_process 18933
    cellular process 18475
      metabolic process 11716
        catabolic process 2608
          autophagy 520
            macroautophagy 323
              aggrephagy + 18
              amphisome-lysosome fusion 0
              autophagosome maturation + 66
              autophagosome organization + 127
              autophagosome-endosome fusion 1
              autophagosome-lysosome fusion + 13
              glycophagy 12
              lipophagy + 8
              lysophagy 0
              mitophagy + 96
              negative regulation of macroautophagy + 37
              nucleophagy + 23
              pexophagy 15
              positive regulation of macroautophagy + 97
              proteaphagy 0
              regulation of macroautophagy + 151
              reticulophagy + 22
              ribophagy 2
              xenophagy + 13
paths to the root