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ONTOLOGY REPORT - ANNOTATIONS

Term:macroautophagy
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Accession:GO:0016236 term browser browse the term
Definition:The autophagic process that proceeds via the formation of an autophagosome.
Synonyms:narrow_synonym: selective autophagy
 broad_synonym: autophagy
 alt_id: GO:0034262
 xref: Reactome:R-HSA-1632852 "Macroautophagy";   Reactome:R-HSA-5205685 "PINK1-PRKN Mediated Mitophagy";   Reactome:R-HSA-8934903 "Receptor Mediated Mitophagy"

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show annotations for term's descendants           Sort by:
macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in ISO (PMID:25484072)
(PMID:11266458)		 ComplexPortal PMID:11266458 PMID:25484072 NCBI chrNW_004624733:6,046,073...6,056,321
Ensembl chrNW_004624733:6,045,432...6,060,784 		JBrowse link
G Atg14 autophagy related 14 involved_in ISO (PMID:23878393) ParkinsonsUK-UCL PMID:23878393 NCBI chrNW_004624884:165,443...220,525 JBrowse link
G Atg16l1 autophagy related 16 like 1 involved_in ISO (PMID:29317426), (PMID:33586810)
(PMID:11266458)		 UniProt
ComplexPortal		 PMID:11266458 PMID:29317426 PMID:33586810 NCBI chrNW_004624843:5,797,725...5,838,768
Ensembl chrNW_004624843:5,805,069...5,838,741 		JBrowse link
G Atg16l2 autophagy related 16 like 2 involved_in ISO (PMID:11266458) ComplexPortal PMID:11266458 NCBI chrNW_004624817:4,123,963...4,153,720
Ensembl chrNW_004624817:4,140,543...4,147,597 		JBrowse link
G Atg3 autophagy related 3 acts_upstream_of_or_within ISO (PMID:24035364) MGI PMID:24035364 NCBI chrNW_004624731:35,978,595...36,004,900 JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22496425), (PMID:23704209), (PMID:24035364)
(PMID:20453062)		 MGI
UniProt
Ensembl		 PMID:20453062 PMID:22496425 PMID:23704209 PMID:24035364 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624780:15,987,483...16,124,158
Ensembl chrNW_004624780:15,987,397...16,124,151 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within
involved_in		 ISO (PMID:24035364)
(PMID:22496425), (PMID:23704209)
(PMID:22354037)		 MGI
BHF-UCL		 PMID:22354037 PMID:22496425 PMID:23704209 PMID:24035364 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Becn1 beclin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17468177)
(PMID:14657337)		 Ensembl
MGI		 PMID:14657337 PMID:17468177 GO_REF:0000107 NCBI chrNW_004624795:1,386,154...1,406,314
Ensembl chrNW_004624795:1,385,756...1,405,714 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16714284) Ensembl
MGI		 PMID:16714284 GO_REF:0000107 NCBI chrNW_004624782:12,995,277...13,004,980
Ensembl chrNW_004624782:12,995,277...13,005,087 		JBrowse link
G Ei24 EI24 autophagy associated transmembrane protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624927:1,548,544...1,566,108 JBrowse link
G Hdac10 histone deacetylase 10 involved_in ISO (PMID:23801752) UniProt PMID:23801752 NCBI chrNW_004624752:518,563...524,497 JBrowse link
G Hmox1 heme oxygenase 1 acts_upstream_of ISO (PMID:20705711) MGI PMID:20705711 NCBI chrNW_004624750:341,699...346,005
Ensembl chrNW_004624750:342,146...345,887 		JBrowse link
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:22,613,396...22,694,022 JBrowse link
G LOC110346887 next to BRCA1 gene 1 protein-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624875:3,477...8,064 JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624842:4,800,533...4,802,235
Ensembl chrNW_004624842:4,800,539...4,802,094 		JBrowse link
G Map1lc3b microtubule associated protein 1 light chain 3 beta involved_in ISO (PMID:28223137) UniProt PMID:28223137 NCBI chrNW_004624746:3,084,418...3,094,250
Ensembl chrNW_004624746:3,084,392...3,094,250 		JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of ISO (PMID:16714284) MGI PMID:16714284 NCBI chrNW_004624818:1,570,155...1,698,264
Ensembl chrNW_004624818:1,570,276...1,698,259 		JBrowse link
G Myo5a myosin VA ISO RGD PMID:29217155 RGD:42721980 NCBI chrNW_004624731:8,114,557...8,280,586
Ensembl chrNW_004624731:8,113,715...8,280,823 		JBrowse link
G Nbr1 NBR1 autophagy cargo receptor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:1,160,588...1,185,919 JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of
involved_in		 ISO
IEA		 (PMID:17468177) MGI
Ensembl		 PMID:17468177 GO_REF:0000107 NCBI chrNW_004624770:8,592,473...8,642,063
Ensembl chrNW_004624770:8,592,457...8,641,843 		JBrowse link
G Pdcd6ip programmed cell death 6 interacting protein involved_in ISO (PMID:25686249) UniProt PMID:25686249 NCBI chrNW_004624788:11,772,268...11,849,040
Ensembl chrNW_004624788:11,772,396...11,845,765 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004624766:8,698,836...8,834,928
Ensembl chrNW_004624766:8,701,642...8,776,578 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004624807:6,543,665...6,612,833
Ensembl chrNW_004624807:6,554,926...6,612,831 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in ISO (PMID:23332761), (PMID:25578879) ParkinsonsUK-UCL PMID:23332761 PMID:25578879 NCBI chrNW_004624779:16,307,875...16,435,567
Ensembl chrNW_004624779:16,307,800...16,434,169 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624730:6,642,195...6,744,480
Ensembl chrNW_004624730:6,642,190...6,744,470 		JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase acts_upstream_of ISO (PMID:17476689) MGI PMID:17476689 NCBI chrNW_004624893:694,944...700,068
Ensembl chrNW_004624893:694,928...700,062 		JBrowse link
G Plaa phospholipase A2 activating protein involved_in ISO (PMID:27753622) UniProt PMID:27753622 NCBI chrNW_004624736:31,127,955...31,169,680
Ensembl chrNW_004624736:31,127,955...31,169,739 		JBrowse link
G Rab2a RAB2A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624744:31,357,926...31,441,341
Ensembl chrNW_004624744:31,357,925...31,441,371 		JBrowse link
G Rab2b RAB2B, member RAS oncogene family involved_in ISO (PMID:28063257) UniProt PMID:28063257 NCBI chrNW_004624825:7,477,729...7,493,669
Ensembl chrNW_004624825:7,478,151...7,493,649 		JBrowse link
G Snf8 SNF8 subunit of ESCRT-II involved_in ISO (PMID:38423010) UniProt PMID:38423010 NCBI chrNW_004624795:5,318,803...5,328,542
Ensembl chrNW_004624795:5,318,802...5,328,768 		JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO (PMID:20168092) GO_Central PMID:20168092 NCBI chrNW_004624733:42,689,454...42,700,916
Ensembl chrNW_004624733:42,691,841...42,700,916 		JBrowse link
G Tbc1d5 TBC1 domain family member 5 involved_in ISO (PMID:24603492) ParkinsonsUK-UCL PMID:24603492 NCBI chrNW_004624821:2,398,211...3,068,212
Ensembl chrNW_004624821:2,398,042...2,806,263 		JBrowse link
G Tcirg1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 acts_upstream_of_or_within ISO (PMID:23704209) MGI PMID:23704209 NCBI chrNW_004624767:18,809,626...18,820,360
Ensembl chrNW_004624767:18,809,689...18,820,390 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISO (PMID:25484072) ComplexPortal PMID:25484072 NCBI chrNW_004624740:31,676,044...31,704,828
Ensembl chrNW_004624740:31,676,044...31,704,820 		JBrowse link
G Tmem74 transmembrane protein 74 involved_in ISO (PMID:18294959) HGNC PMID:18294959 NCBI chrNW_004624763:23,762,204...23,765,889
Ensembl chrNW_004624763:23,762,606...23,765,496 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 acts_upstream_of_or_within ISO (PMID:24713655) MGI PMID:24713655 NCBI chrNW_004624842:4,666,638...4,675,576
Ensembl chrNW_004624842:4,666,640...4,675,556 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:20529957) GO_Central PMID:20529957 NCBI chrNW_004624809:6,434,842...6,487,442
Ensembl chrNW_004624809:6,436,658...6,487,251 		JBrowse link
G Ubxn6 UBX domain protein 6 involved_in ISO (PMID:27753622) UniProt PMID:27753622 NCBI chrNW_004624828:5,257,960...5,265,371
Ensembl chrNW_004624828:5,258,023...5,264,989 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:21258367)
(PMID:21855797)
(PMID:22354037)		 MGI
ParkinsonsUK-UCL
BHF-UCL		 PMID:21258367 PMID:21855797 PMID:22354037 NCBI chrNW_004624747:27,680,994...27,697,342
Ensembl chrNW_004624747:27,681,033...27,695,966 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624740:22,121,772...22,297,514
Ensembl chrNW_004624740:22,121,571...22,299,193 		JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624737:33,601,794...34,020,779
Ensembl chrNW_004624737:33,664,093...34,020,863 		JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624734:33,299,732...33,341,672
Ensembl chrNW_004624734:33,299,373...33,321,199 		JBrowse link
G Yod1 YOD1 deubiquitinase involved_in ISO (PMID:27753622) UniProt PMID:27753622 NCBI chrNW_004624807:4,443,653...4,448,759
Ensembl chrNW_004624807:4,443,650...4,446,373 		JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:28,384,199...28,442,211
Ensembl chrNW_004624734:28,384,122...28,442,211 		JBrowse link
aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg4a autophagy related 4A cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624803:8,336,123...8,407,354
Ensembl chrNW_004624803:8,337,042...8,407,222 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624847:5,605,818...5,629,729
Ensembl chrNW_004624847:5,605,844...5,629,891 		JBrowse link
G Atg4c autophagy related 4C cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624742:31,061,869...31,130,786
Ensembl chrNW_004624742:31,060,376...31,127,740 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:2,617,853...2,624,756
Ensembl chrNW_004624828:2,617,773...2,624,756 		JBrowse link
G Atg5 autophagy related 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624780:15,987,483...16,124,158
Ensembl chrNW_004624780:15,987,397...16,124,151 		JBrowse link
G Sqstm1 sequestosome 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:42,689,454...42,700,916
Ensembl chrNW_004624733:42,691,841...42,700,916 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:21143716) UniProt PMID:21143716 NCBI chrNW_004624809:6,434,842...6,487,442
Ensembl chrNW_004624809:6,436,658...6,487,251 		JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624900:1,785,397...2,106,455
Ensembl chrNW_004624900:1,788,338...2,008,811 		JBrowse link
G Wdr81 WD repeat domain 81 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624786:4,429,492...4,440,865
Ensembl chrNW_004624786:4,429,087...4,442,037 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:1,967,002...2,160,102
Ensembl chrNW_004624767:1,966,898...2,160,465 		JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO (PMID:29180427) UniProt PMID:29180427 NCBI chrNW_004624740:16,883,725...16,887,678
Ensembl chrNW_004624740:16,883,828...16,887,685 		JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO (PMID:30930081) MGI PMID:30930081 NCBI chrNW_004624740:28,509,979...28,527,813
Ensembl chrNW_004624740:28,509,230...28,527,519 		JBrowse link
G Atg10 autophagy related 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624743:2,381,131...2,663,640
Ensembl chrNW_004624743:2,381,038...2,649,322 		JBrowse link
G Atg101 autophagy related 101 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624816:255,443...261,636
Ensembl chrNW_004624816:255,432...262,151 		JBrowse link
G Atg12 autophagy related 12 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624733:6,046,073...6,056,321
Ensembl chrNW_004624733:6,045,432...6,060,784 		JBrowse link
G Atg13 autophagy related 13 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19211835) MGI
InterPro		 PMID:19211835 GO_REF:0000002 NCBI chrNW_004624767:1,924,672...1,953,868 JBrowse link
G Atg14 autophagy related 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624884:165,443...220,525 JBrowse link
G Atg16l1 autophagy related 16 like 1 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624843:5,797,725...5,838,768
Ensembl chrNW_004624843:5,805,069...5,838,741 		JBrowse link
G Atg16l2 autophagy related 16 like 2 NOT|involved_in ISO
IEA		 (PMID:22082872) UniProt
InterPro		 PMID:22082872 GO_REF:0000002 NCBI chrNW_004624817:4,123,963...4,153,720
Ensembl chrNW_004624817:4,140,543...4,147,597 		JBrowse link
G Atg2a autophagy related 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:21,480,320...21,507,934
Ensembl chrNW_004624767:21,488,404...21,507,528 		JBrowse link
G Atg2b autophagy related 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624734:7,015,356...7,097,392
Ensembl chrNW_004624734:7,015,672...7,096,348 		JBrowse link
G Atg3 autophagy related 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21220506) TreeGrafter
MGI		 PMID:21220506 GO_REF:0000118 NCBI chrNW_004624731:35,978,595...36,004,900 JBrowse link
G Atg4a autophagy related 4A cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624803:8,336,123...8,407,354
Ensembl chrNW_004624803:8,337,042...8,407,222 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624847:5,605,818...5,629,729
Ensembl chrNW_004624847:5,605,844...5,629,891 		JBrowse link
G Atg4c autophagy related 4C cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624742:31,061,869...31,130,786
Ensembl chrNW_004624742:31,060,376...31,127,740 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:2,617,853...2,624,756
Ensembl chrNW_004624828:2,617,773...2,624,756 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23704209) RGD
MGI
Ensembl		 PMID:16420522 PMID:23704209 GO_REF:0000107 RGD:1643189 NCBI chrNW_004624780:15,987,483...16,124,158
Ensembl chrNW_004624780:15,987,397...16,124,151 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23704209) MGI
TreeGrafter		 PMID:23704209 GO_REF:0000118 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22456507)
(PMID:23402761)
(PMID:15755735), (PMID:22456507)		 MGI
Ensembl		 PMID:15755735 PMID:22456507 PMID:23402761 GO_REF:0000107 NCBI chrNW_004624823:5,787,525...5,797,536
Ensembl chrNW_004624823:5,787,601...5,797,534 		JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within ISO (PMID:15755735) MGI PMID:15755735 NCBI chrNW_004624800:5,589,366...5,600,253
Ensembl chrNW_004624800:5,591,297...5,598,739 		JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chrNW_004624747:21,509,360...21,567,424
Ensembl chrNW_004624747:21,509,366...21,568,098 		JBrowse link
G Becn1 beclin 1 involved_in ISO
IEA		 RGD
UniProt
TreeGrafter
Ensembl		 PMID:16420522 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 RGD:1643189 NCBI chrNW_004624795:1,386,154...1,406,314
Ensembl chrNW_004624795:1,385,756...1,405,714 		JBrowse link
G Ctsd cathepsin D involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15452145) Ensembl
MGI		 PMID:15452145 GO_REF:0000107 NCBI chrNW_004624767:14,661,058...14,671,116
Ensembl chrNW_004624767:14,660,936...14,671,671 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:4,873,473...4,950,868
Ensembl chrNW_004624772:4,873,468...4,953,655 		JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624786:6,323,866...6,324,845
Ensembl chrNW_004624786:6,323,913...6,324,845 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO (PMID:24430976) MGI PMID:24430976 NCBI chrNW_004624753:8,715,898...8,805,728
Ensembl chrNW_004624753:8,715,898...8,804,194 		JBrowse link
G Irgm immunity related GTPase M involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:41,241,488...41,248,162 JBrowse link
G LOC101698514 interferon-inducible GTPase 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624774:10,075,918...10,146,439 JBrowse link
G LOC101703150 ubiquitin-like-conjugating enzyme ATG3 pseudogene involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624901:1,933,230...1,934,108 JBrowse link
G LOC101708940 T-cell-specific guanine nucleotide triphosphate-binding protein 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:41,275,218...41,309,185 JBrowse link
G LOC101712848 serine/threonine-protein kinase ULK2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624849:6,353,989...6,447,986
Ensembl chrNW_004624849:6,354,678...6,448,026 		JBrowse link
G LOC101713661 beclin-2-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624807:8,779,379...8,780,647 JBrowse link
G LOC101713718 autophagy-related protein 13-like involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624730:44,641,182...44,642,543 JBrowse link
G LOC101721047 RB1-inducible coiled-coil protein 1-like involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624784:5,426,159...5,447,188 JBrowse link
G LOC106007613 T-cell-specific guanine nucleotide triphosphate-binding protein 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:41,267,713...41,274,617 JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624842:4,800,533...4,802,235
Ensembl chrNW_004624842:4,800,539...4,802,094 		JBrowse link
G Map1lc3b microtubule associated protein 1 light chain 3 beta involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chrNW_004624746:3,084,418...3,094,250
Ensembl chrNW_004624746:3,084,392...3,094,250 		JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of ISO (PMID:23695157) MGI PMID:23695157 NCBI chrNW_004624923:952,782...1,062,391 JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:2,746,853...2,774,038
Ensembl chrNW_004624741:2,748,796...2,774,119 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) MGI PMID:23455425 NCBI chrNW_004624734:125,190...184,690
Ensembl chrNW_004624734:125,190...184,756 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24098492) RGD
MGI
TreeGrafter		 PMID:12453151 PMID:24098492 GO_REF:0000118 RGD:2303129 NCBI chrNW_004624779:16,307,875...16,435,567
Ensembl chrNW_004624779:16,307,800...16,434,169 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:15452145) MGI PMID:15452145 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:8,420,336...8,448,478
Ensembl chrNW_004624762:8,420,305...8,449,647 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624753:18,988,842...19,014,799 JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624777:19,730,784...19,744,423
Ensembl chrNW_004624777:19,730,768...19,747,292 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:19956673) GO_Central PMID:19956673 NCBI chrNW_004625042:56,509...112,519
Ensembl chrNW_004625042:56,517...112,612 		JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624735:2,778,191...2,860,762 JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:6,908,113...6,927,724
Ensembl chrNW_004624823:6,908,636...6,925,863 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624743:32,277,197...32,283,346
Ensembl chrNW_004624743:32,273,385...32,283,235 		JBrowse link
G Stx12 syntaxin 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:11,620,527...11,665,829
Ensembl chrNW_004624764:11,620,439...11,664,410 		JBrowse link
G Synpo2 synaptopodin 2 involved_in ISO PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chrNW_004624867:5,697,192...5,895,957 JBrowse link
G Tcirg1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 acts_upstream_of_or_within ISO (PMID:23908015) MGI PMID:23908015 NCBI chrNW_004624767:18,809,626...18,820,360
Ensembl chrNW_004624767:18,809,689...18,820,390 		JBrowse link
G Tmem41b transmembrane protein 41B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624766:1,416,819...1,450,942
Ensembl chrNW_004624766:1,415,014...1,450,916 		JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624763:2,278,751...2,297,149
Ensembl chrNW_004624763:2,277,794...2,296,423 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624842:4,666,638...4,675,576
Ensembl chrNW_004624842:4,666,640...4,675,556 		JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:10,729,766...10,803,253
Ensembl chrNW_004624767:10,729,413...10,748,455 		JBrowse link
G Trim32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:18,577,764...18,600,869
Ensembl chrNW_004624760:18,585,279...18,599,659 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624809:6,434,842...6,487,442
Ensembl chrNW_004624809:6,436,658...6,487,251 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624910:1,547,942...1,551,323
Ensembl chrNW_004624910:1,548,249...1,550,126 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624738:6,313,925...6,341,999
Ensembl chrNW_004624738:6,323,404...6,341,996 		JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624744:33,676,900...33,725,388
Ensembl chrNW_004624744:33,696,129...33,725,383 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:27,680,994...27,697,342
Ensembl chrNW_004624747:27,681,033...27,695,966 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624894:53,677...59,807
Ensembl chrNW_004624894:54,683...59,716 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO (PMID:30093494), (PMID:30933966)
(PMID:28890335)		 UniProt PMID:28890335 PMID:30093494 PMID:30933966 NCBI chrNW_004624871:1,519,662...1,626,040
Ensembl chrNW_004624871:1,519,764...1,625,034 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO (PMID:28561066) UniProt PMID:28561066 NCBI chrNW_004624893:845,689...852,221
Ensembl chrNW_004624893:845,701...852,244 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in ISO (PMID:28561066) UniProt PMID:28561066 NCBI chrNW_004624801:11,322,159...11,351,720
Ensembl chrNW_004624801:11,318,656...11,351,839 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:28561066) UniProt PMID:28561066 NCBI chrNW_004624870:3,487,814...3,518,206
Ensembl chrNW_004624870:3,486,375...3,518,193 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in ISO (PMID:20505359), (PMID:28561066)
(PMID:28890335)		 UniProt PMID:20505359 PMID:28561066 PMID:28890335 NCBI chrNW_004624740:28,306,655...28,346,430
Ensembl chrNW_004624740:28,306,052...28,346,508 		JBrowse link
autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg2b AFG2 AAA ATPase homolog B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:13,901,347...13,917,051 JBrowse link
G Atg12 autophagy related 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:6,046,073...6,056,321
Ensembl chrNW_004624733:6,045,432...6,060,784 		JBrowse link
G Atg14 autophagy related 14 involved_in ISO (PMID:10625637) ComplexPortal PMID:10625637 NCBI chrNW_004624884:165,443...220,525 JBrowse link
G Becn1 beclin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624795:1,386,154...1,406,314
Ensembl chrNW_004624795:1,385,756...1,405,714 		JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:302,344...309,117
Ensembl chrNW_004624746:302,404...309,644 		JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004624770:19,487,040...19,489,740 JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004624832:45,293...48,314 JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624789:3,557,811...3,587,814
Ensembl chrNW_004624789:3,557,797...3,587,703 		JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004624749:16,738,538...16,772,553
Ensembl chrNW_004624749:16,738,416...16,772,391 		JBrowse link
G Chmp4a charged multivesicular body protein 4A involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004624820:8,281,081...8,284,969 JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004624842:5,454,616...5,505,454
Ensembl chrNW_004624842:5,450,900...5,505,418 		JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004624744:9,735,585...9,769,635
Ensembl chrNW_004624744:9,739,651...9,769,615 		JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004624736:38,025,247...38,044,808 JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004624801:10,063,284...10,070,322
Ensembl chrNW_004624801:10,063,614...10,070,320 		JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004624758:18,524,338...18,538,909
Ensembl chrNW_004624758:18,524,290...18,538,083 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16714284) Ensembl
MGI		 PMID:16714284 GO_REF:0000107 NCBI chrNW_004624782:12,995,277...13,004,980
Ensembl chrNW_004624782:12,995,277...13,005,087 		JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within ISO (PMID:27715390) MGI PMID:27715390 NCBI chrNW_004624730:73,910,843...73,923,273
Ensembl chrNW_004624730:73,910,405...73,926,844 		JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23479740) MGI
TreeGrafter		 PMID:23479740 GO_REF:0000118 NCBI chrNW_004624778:9,490,744...9,614,289
Ensembl chrNW_004624778:9,491,258...9,614,299 		JBrowse link
G Irgm immunity related GTPase M involved_in ISO (PMID:21757726) UniProt PMID:21757726 NCBI chrNW_004624733:41,241,488...41,248,162 JBrowse link
G Lamp2 lysosomal associated membrane protein 2 involved_in ISO (PMID:27628032) UniProt PMID:27628032 NCBI chrNW_004624931:297,864...343,314
Ensembl chrNW_004624931:298,328...343,915 		JBrowse link
G Lix1 limb and CNS expressed 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624743:15,744,882...15,794,567
Ensembl chrNW_004624743:15,744,779...15,794,573 		JBrowse link
G Lix1l limb and CNS expressed 1 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:17,292,118...17,313,010
Ensembl chrNW_004624772:17,293,732...17,313,184 		JBrowse link
G LOC110343879 sorting nexin-14-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624799:8,670,808...8,695,638 JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624842:4,800,533...4,802,235
Ensembl chrNW_004624842:4,800,539...4,802,094 		JBrowse link
G Map1lc3b microtubule associated protein 1 light chain 3 beta involved_in ISO (PMID:28223137) UniProt PMID:28223137 NCBI chrNW_004624746:3,084,418...3,094,250
Ensembl chrNW_004624746:3,084,392...3,094,250 		JBrowse link
G Mcoln1 mucolipin TRP cation channel 1 acts_upstream_of_or_within ISO (PMID:20600908) MGI PMID:20600908 NCBI chrNW_004624828:634,318...643,406
Ensembl chrNW_004624828:634,214...643,633 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within ISO (PMID:29514215) MGI PMID:29514215 NCBI chrNW_004624777:8,831,246...8,877,881
Ensembl chrNW_004624777:8,827,851...8,877,873 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in ISO (PMID:10625637) ComplexPortal PMID:10625637 NCBI chrNW_004624779:16,307,875...16,435,567
Ensembl chrNW_004624779:16,307,800...16,434,169 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 involved_in ISO (PMID:10625637) ComplexPortal PMID:10625637 NCBI chrNW_004624730:6,642,195...6,744,480
Ensembl chrNW_004624730:6,642,190...6,744,470 		JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624748:8,605,272...8,652,785 JBrowse link
G Snap29 synaptosome associated protein 29 involved_in ISO (PMID:23217709) UniProt PMID:23217709 NCBI chrNW_004624945:799,831...837,720
Ensembl chrNW_004624945:801,833...837,564 		JBrowse link
G Snapin SNAP associated protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22797916)
(PMID:20920792)		 MGI
Ensembl		 PMID:20920792 PMID:22797916 GO_REF:0000107 NCBI chrNW_004624885:3,490,321...3,491,963
Ensembl chrNW_004624885:3,490,321...3,491,946 		JBrowse link
G Snx14 sorting nexin 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624799:8,695,488...8,754,094
Ensembl chrNW_004624799:8,670,883...8,753,631 		JBrowse link
G Stx17 syntaxin 17 involved_in ISO (PMID:28306502)
(PMID:23217709), (PMID:24554770)		 UniProt PMID:23217709 PMID:24554770 PMID:28306502 NCBI chrNW_004624825:967,493...1,066,513
Ensembl chrNW_004624825:972,755...1,066,597 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624740:31,676,044...31,704,828
Ensembl chrNW_004624740:31,676,044...31,704,820 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:23459205) GO_Central PMID:23459205 NCBI chrNW_004624809:6,434,842...6,487,442
Ensembl chrNW_004624809:6,436,658...6,487,251 		JBrowse link
G Uvrag UV radiation resistance associated involved_in ISO (PMID:28306502) UniProt PMID:28306502 NCBI chrNW_004624817:989,362...1,371,096 JBrowse link
G Vamp7 vesicle associated membrane protein 7 NOT|involved_in ISO (PMID:23217709) UniProt PMID:23217709 NCBI chrNW_004624980:40,937...94,547
Ensembl chrNW_004624980:40,843...94,528 		JBrowse link
G Vamp8 vesicle associated membrane protein 8 involved_in ISO (PMID:23217709) UniProt PMID:23217709 NCBI chrNW_004624749:17,558,429...17,562,765
Ensembl chrNW_004624749:17,558,429...17,562,723 		JBrowse link
G Vcp valosin containing protein involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501 		JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT|involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chrNW_004624734:24,435,400...24,464,883
Ensembl chrNW_004624734:24,438,495...24,463,923 		JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chrNW_004624741:3,959,561...3,991,191
Ensembl chrNW_004624741:3,959,363...3,991,191 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:22,458,098...22,478,735
Ensembl chrNW_004624747:22,461,346...22,478,867 		JBrowse link
G Vps33b VPS33B late endosome and lysosome associated NOT|involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chrNW_004624768:17,221,809...17,264,264
Ensembl chrNW_004624768:17,244,002...17,264,441 		JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B NOT|involved_in ISO (PMID:23217709) UniProt PMID:23217709 NCBI chrNW_004624734:33,299,732...33,341,672
Ensembl chrNW_004624734:33,299,373...33,321,199 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 NOT|involved_in ISO (PMID:20505359) UniProt PMID:20505359 NCBI chrNW_004624740:28,306,655...28,346,430
Ensembl chrNW_004624740:28,306,052...28,346,508 		JBrowse link
autophagosome membrane docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624884:165,443...220,525 JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chrNW_004624747:21,509,360...21,567,424
Ensembl chrNW_004624747:21,509,366...21,568,098 		JBrowse link
G Calm1 calmodulin 1 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chrNW_004624734:12,030,264...12,041,682
Ensembl chrNW_004624734:12,030,001...12,041,772 		JBrowse link
G Calm2 calmodulin 2 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chrNW_004624738:28,525,290...28,541,562
Ensembl chrNW_004624738:28,525,285...28,541,514 		JBrowse link
G Calm3 calmodulin 3 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chrNW_004624832:6,957,775...6,966,505
Ensembl chrNW_004624832:6,958,820...6,966,514 		JBrowse link
G Snap29 synaptosome associated protein 29 involved_in ISO (PMID:25686604) GO_Central PMID:25686604 NCBI chrNW_004624945:799,831...837,720
Ensembl chrNW_004624945:801,833...837,564 		JBrowse link
G Stx17 syntaxin 17 involved_in ISO (PMID:25686604) GO_Central PMID:25686604 NCBI chrNW_004624825:967,493...1,066,513
Ensembl chrNW_004624825:972,755...1,066,597 		JBrowse link
G Vamp8 vesicle associated membrane protein 8 involved_in ISO (PMID:25686604) GO_Central PMID:25686604 NCBI chrNW_004624749:17,558,429...17,562,765
Ensembl chrNW_004624749:17,558,429...17,562,723 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chrNW_004624871:1,519,662...1,626,040
Ensembl chrNW_004624871:1,519,764...1,625,034 		JBrowse link
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:22186024) ParkinsonsUK-UCL PMID:22186024 NCBI chrNW_004624764:2,614,541...2,631,972
Ensembl chrNW_004624764:2,614,827...2,631,793 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) ARUK-UCL PMID:23707074 NCBI chrNW_004624885:2,315,371...2,321,327
Ensembl chrNW_004624885:2,315,142...2,321,327 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004624766:8,698,836...8,834,928
Ensembl chrNW_004624766:8,701,642...8,776,578 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004624807:6,543,665...6,612,833
Ensembl chrNW_004624807:6,554,926...6,612,831 		JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:25365221) MGI PMID:25365221 NCBI chrNW_004624804:11,569,024...11,672,037
Ensembl chrNW_004624804:11,569,150...11,670,373 		JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within ISO (PMID:25365221) MGI PMID:25365221 NCBI chrNW_004624734:33,175,080...33,240,484
Ensembl chrNW_004624734:33,175,041...33,238,664 		JBrowse link
autophagosome-endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rubcnl rubicon like autophagy enhancer involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624748:8,605,272...8,652,785 JBrowse link
autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ARF like GTPase 8B involved_in ISO (PMID:28325809) UniProt PMID:28325809 NCBI chrNW_004624773:15,785,883...15,833,832
Ensembl chrNW_004624773:15,785,339...15,832,668 		JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:2,614,541...2,631,972
Ensembl chrNW_004624764:2,614,827...2,631,793 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624782:12,995,277...13,004,980
Ensembl chrNW_004624782:12,995,277...13,005,087 		JBrowse link
G Diaph3 diaphanous related formin 3 acts_upstream_of_or_within ISO (PMID:33036023) MGI PMID:33036023 NCBI chrNW_004624748:20,937,242...21,439,554
Ensembl chrNW_004624748:21,045,085...21,383,605 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO (PMID:29727621) UniProt PMID:29727621 NCBI chrNW_004624796:5,963,005...6,113,081
Ensembl chrNW_004624796:5,962,999...6,113,087 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO (PMID:29727621) UniProt PMID:29727621 NCBI chrNW_004624795:3,907,891...3,931,246
Ensembl chrNW_004624795:3,908,037...3,931,430 		JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 involved_in ISO (PMID:28325809) UniProt PMID:28325809 NCBI chrNW_004624795:37,059...86,568
Ensembl chrNW_004624795:37,059...89,135 		JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624748:8,605,272...8,652,785 JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) UniProt PMID:23023224 NCBI chrNW_004624750:359,130...379,454
Ensembl chrNW_004624750:357,222...379,356 		JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO (PMID:33422265) UniProt PMID:33422265 NCBI chrNW_004624804:9,286,614...9,337,149
Ensembl chrNW_004624804:9,284,104...9,337,892 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chrNW_004624740:32,480,138...32,615,436
Ensembl chrNW_004624740:32,483,092...32,615,260 		JBrowse link
glycophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:6,046,073...6,056,321
Ensembl chrNW_004624733:6,045,432...6,060,784 		JBrowse link
G Atg2a autophagy related 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:21,480,320...21,507,934
Ensembl chrNW_004624767:21,488,404...21,507,528 		JBrowse link
G Atg2b autophagy related 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624734:7,015,356...7,097,392
Ensembl chrNW_004624734:7,015,672...7,096,348 		JBrowse link
G Atg3 autophagy related 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:35,978,595...36,004,900 JBrowse link
G Gaa alpha glucosidase involved_in ISO (PMID:12739885) MGI PMID:12739885 NCBI chrNW_004624801:9,217,633...9,235,931
Ensembl chrNW_004624801:9,217,639...9,235,931 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in ISO (PMID:20810658) MGI PMID:20810658 NCBI chrNW_004624752:26,971,266...26,979,483
Ensembl chrNW_004624752:26,971,187...26,981,929 		JBrowse link
G LOC101703150 ubiquitin-like-conjugating enzyme ATG3 pseudogene involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624901:1,933,230...1,934,108 JBrowse link
G LOC101721047 RB1-inducible coiled-coil protein 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624784:5,426,159...5,447,188 JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:2,778,191...2,860,762 JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO (PMID:20810658) GO_Central
MGI		 PMID:20810658 NCBI chrNW_004624757:14,629,607...14,634,274
Ensembl chrNW_004624757:14,631,455...14,634,147 		JBrowse link
lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aup1 AUP1 lipid droplet regulating VLDL assembly factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624749:28,983,753...28,986,785
Ensembl chrNW_004624749:28,983,802...28,986,643 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:23708524) GO_Central PMID:23708524 NCBI chrNW_004625042:56,509...112,519
Ensembl chrNW_004625042:56,517...112,612 		JBrowse link
G Spart spartin involved_in ISO (PMID:37443287), (PMID:38190532) UniProt PMID:37443287 PMID:38190532 NCBI chrNW_004624776:1,065,600...1,104,938 JBrowse link
mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl interactor 2 involved_in ISO (PMID:38081847) UniProt PMID:38081847 NCBI chrNW_004624765:12,971,867...13,091,446
Ensembl chrNW_004624765:12,998,315...13,091,370 		JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:1,967,002...2,160,102
Ensembl chrNW_004624767:1,966,898...2,160,465 		JBrowse link
G Arfip2 ARF interacting protein 2 involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004624817:7,993,830...7,998,729
Ensembl chrNW_004624817:7,991,572...7,997,963 		JBrowse link
G Arhgap26 Rho GTPase activating protein 26 involved_in ISO (PMID:38081847) UniProt PMID:38081847 NCBI chrNW_004624774:1,978,049...2,443,632
Ensembl chrNW_004624774:1,977,963...2,442,410 		JBrowse link
G Atg13 autophagy related 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:1,924,672...1,953,868 JBrowse link
G Atg14 autophagy related 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624884:165,443...220,525 JBrowse link
G Atg4a autophagy related 4A cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624803:8,336,123...8,407,354
Ensembl chrNW_004624803:8,337,042...8,407,222 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624847:5,605,818...5,629,729
Ensembl chrNW_004624847:5,605,844...5,629,891 		JBrowse link
G Atg4c autophagy related 4C cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624742:31,061,869...31,130,786
Ensembl chrNW_004624742:31,060,376...31,127,740 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624828:2,617,853...2,624,756
Ensembl chrNW_004624828:2,617,773...2,624,756 		JBrowse link
G Atg7 autophagy related 7 involved_in ISO (PMID:20080761)
(PMID:19279012)		 ParkinsonsUK-UCL PMID:19279012 PMID:20080761 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Bcl2l13 BCL2 like 13 acts_upstream_of_or_within ISO (PMID:31266807) MGI PMID:31266807 NCBI chrNW_004624735:9,594,134...9,692,967
Ensembl chrNW_004624735:9,599,383...9,687,277 		JBrowse link
G Becn1 beclin 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624795:1,386,154...1,406,314
Ensembl chrNW_004624795:1,385,756...1,405,714 		JBrowse link
G Bnip3 BCL2 interacting protein 3 involved_in ISO (PMID:22505714) FlyBase PMID:22505714 NCBI chrNW_004624737:14,848,355...14,863,731
Ensembl chrNW_004624737:14,848,350...14,862,965 		JBrowse link
G Clec16a C-type lectin domain containing 16A involved_in ISO (PMID:35604110) DisProt PMID:35604110 NCBI chrNW_004624824:8,174,653...8,400,760
Ensembl chrNW_004624824:8,174,610...8,400,723 		JBrowse link
G Ctsk cathepsin K involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004624772:19,013,189...19,026,756
Ensembl chrNW_004624772:19,015,835...19,025,588 		JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha involved_in ISO (PMID:38340717) UniProt PMID:38340717 NCBI chrNW_004624734:33,624,246...33,640,667
Ensembl chrNW_004624734:33,621,782...33,640,549 		JBrowse link
G Fundc1 FUN14 domain containing 1 involved_in ISO (PMID:34244144) FlyBase PMID:34244144 NCBI chrNW_004624887:626,321...641,296
Ensembl chrNW_004624887:626,321...641,293 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) MGI PMID:23707074 NCBI chrNW_004624885:2,315,371...2,321,327
Ensembl chrNW_004624885:2,315,142...2,321,327 		JBrowse link
G LOC101705523 protein NipSnap homolog 3A involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624758:6,602,220...6,614,722 JBrowse link
G LOC101713661 beclin-2-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624807:8,779,379...8,780,647 JBrowse link
G LOC101713718 autophagy-related protein 13-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:44,641,182...44,642,543 JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004624858:1,797,123...2,471,017
Ensembl chrNW_004624858:1,797,123...2,471,867 		JBrowse link
G Map1lc3b microtubule associated protein 1 light chain 3 beta involved_in ISO (PMID:28017329)
(PMID:19279012)		 UniProt
ParkinsonsUK-UCL		 PMID:19279012 PMID:28017329 NCBI chrNW_004624746:3,084,418...3,094,250
Ensembl chrNW_004624746:3,084,392...3,094,250 		JBrowse link
G Nipsnap1 nipsnap homolog 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624747:5,875,123...5,893,668
Ensembl chrNW_004624747:5,874,226...5,894,031 		JBrowse link
G Nipsnap2 nipsnap homolog 2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624740:8,176,682...8,207,790
Ensembl chrNW_004624740:8,176,656...8,209,029 		JBrowse link
G Nipsnap3a nipsnap homolog 3A involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624758:6,634,215...6,651,379
Ensembl chrNW_004624758:6,633,075...6,651,937 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in ISO (PMID:33406421) ARUK-UCL PMID:33406421 NCBI chrNW_004624903:1,863,110...1,912,299
Ensembl chrNW_004624903:1,863,337...1,910,177 		JBrowse link
G Phb2 prohibitin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624860:3,599,435...3,605,016
Ensembl chrNW_004624860:3,599,687...3,604,872 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:38081847)
(PMID:33406421)		 UniProt
RGD
ARUK-UCL		 PMID:25154397 PMID:33406421 PMID:38081847 RGD:12904014 NCBI chrNW_004624764:5,656,207...5,671,260
Ensembl chrNW_004624764:5,656,229...5,671,260 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within		 ISO (PMID:23685073), (PMID:28017329)
(PMID:24949970)
PMID:20457763		 UniProt
MGI
ParkinsonsUK-UCL		 PMID:20457763 PMID:23685073 PMID:24949970 PMID:28017329 RGD:10047224 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747 		JBrowse link
G Retreg1 reticulophagy regulator 1 acts_upstream_of_or_within ISO (PMID:31446166) MGI PMID:31446166 NCBI chrNW_004624751:13,377,583...13,502,144
Ensembl chrNW_004624751:13,376,502...13,501,918 		JBrowse link
G Rimoc1 RAB7A interacting MON1-CCZ1 complex subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624759:13,050,001...13,067,231
Ensembl chrNW_004624759:13,050,315...13,068,155 		JBrowse link
G Spata33 spermatogenesis associated 33 involved_in ISO (PMID:33087875) UniProt PMID:33087875 NCBI chrNW_004624746:294,427...302,393
Ensembl chrNW_004624746:294,432...302,349 		JBrowse link
G Sqstm1 sequestosome 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:42,689,454...42,700,916
Ensembl chrNW_004624733:42,691,841...42,700,916 		JBrowse link
G Tafazzin tafazzin, phospholipid-lysophospholipid transacylase involved_in ISO (PMID:33096711)
(PMID:25919711)		 UniProt PMID:25919711 PMID:33096711 NCBI chrNW_004624946:871,618...885,331
Ensembl chrNW_004624946:871,901...879,508 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of ISO (PMID:22044588) MGI PMID:22044588 NCBI chrNW_004624860:1,416,419...1,455,953
Ensembl chrNW_004624860:1,417,131...1,457,717 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of ISO (PMID:22044588) MGI PMID:22044588 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO (PMID:21855797) ParkinsonsUK-UCL PMID:21855797 NCBI chrNW_004624747:27,680,994...27,697,342
Ensembl chrNW_004624747:27,681,033...27,695,966 		JBrowse link
negative regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 involved_in ISO (PMID:31857589) UniProt PMID:31857589 NCBI chrNW_004624893:608,744...627,600
Ensembl chrNW_004624893:608,540...628,580 		JBrowse link
G Lypla1 lysophospholipase 1 involved_in ISO (PMID:37802024) UniProt PMID:37802024 NCBI chrNW_004624735:1,582,169...1,622,307 JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:27994061) MGI
Ensembl		 PMID:27994061 GO_REF:0000107 NCBI chrNW_004624795:1,386,154...1,406,314
Ensembl chrNW_004624795:1,385,756...1,405,714 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (PMID:23918802) MGI PMID:23918802 NCBI chrNW_004624754:24,354,271...24,368,319
Ensembl chrNW_004624754:24,354,284...24,368,638 		JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624927:1,470,218...1,512,780
Ensembl chrNW_004624927:1,469,025...1,512,790 		JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004624738:18,217,238...18,260,096
Ensembl chrNW_004624738:18,216,715...18,260,729 		JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in ISO (PMID:23916833) ParkinsonsUK-UCL PMID:23916833 NCBI chrNW_004624778:106,594...279,325
Ensembl chrNW_004624778:108,761...279,230 		JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23695157) MGI
TreeGrafter		 PMID:23695157 GO_REF:0000118 NCBI chrNW_004624923:952,782...1,062,391 JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISO (PMID:20181828) UniProt PMID:20181828 NCBI chrNW_004624782:13,042,938...13,044,298
Ensembl chrNW_004624782:13,042,939...13,044,267 		JBrowse link
G Phf23 PHD finger protein 23 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624786:9,852,151...9,856,541
Ensembl chrNW_004624786:9,852,366...9,856,524 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chrNW_004624764:5,656,207...5,671,260
Ensembl chrNW_004624764:5,656,229...5,671,260 		JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in ISO (PMID:21242315) UniProt PMID:21242315 NCBI chrNW_004624820:1,614,884...1,714,020 JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) UniProt PMID:21242315 NCBI chrNW_004624772:15,800,793...15,833,453
Ensembl chrNW_004624772:15,803,369...15,833,968 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) HGNC PMID:28195531 NCBI chrNW_004624849:3,147,251...3,159,358
Ensembl chrNW_004624849:3,149,121...3,159,273 		JBrowse link
G Tmem39a transmembrane protein 39A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:28,701,873...28,773,697
Ensembl chrNW_004624731:28,740,048...28,773,701 		JBrowse link
negative regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A involved_in ISO (PMID:28223137) UniProt PMID:28223137 NCBI chrNW_004624824:8,174,653...8,400,760
Ensembl chrNW_004624824:8,174,610...8,400,723 		JBrowse link
G Phf23 PHD finger protein 23 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624786:9,852,151...9,856,541
Ensembl chrNW_004624786:9,852,366...9,856,524 		JBrowse link
G Rubcn rubicon autophagy regulator involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:61,040,848...61,111,998
Ensembl chrNW_004624730:61,040,857...61,112,926 		JBrowse link
G Tmem39a transmembrane protein 39A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:28,701,873...28,773,697
Ensembl chrNW_004624731:28,740,048...28,773,701 		JBrowse link
G Ubqln4 ubiquilin 4 involved_in ISO (PMID:23459205) UniProt PMID:23459205 NCBI chrNW_004624885:1,382,302...1,398,474
Ensembl chrNW_004624885:1,383,897...1,398,484 		JBrowse link
negative regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 acts_upstream_of_or_within ISO (PMID:20705711) MGI PMID:20705711 NCBI chrNW_004624750:341,699...346,005
Ensembl chrNW_004624750:342,146...345,887 		JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in ISO (PMID:19640926) ParkinsonsUK-UCL PMID:19640926 NCBI chrNW_004624778:106,594...279,325
Ensembl chrNW_004624778:108,761...279,230 		JBrowse link
G Lzts1 leucine zipper tumor suppressor 1 involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004624758:15,956,300...16,006,174
Ensembl chrNW_004624758:15,956,236...16,006,192 		JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16714284), (PMID:23274896)
(PMID:25327288)		 MGI
TreeGrafter		 PMID:16714284 PMID:23274896 PMID:25327288 GO_REF:0000118 NCBI chrNW_004624818:1,570,155...1,698,264
Ensembl chrNW_004624818:1,570,276...1,698,259 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17468177) MGI
Ensembl		 PMID:17468177 GO_REF:0000107 NCBI chrNW_004624770:8,592,473...8,642,063
Ensembl chrNW_004624770:8,592,457...8,641,843 		JBrowse link
G Nrbp2 nuclear receptor binding protein 2 involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004624735:12,972,615...12,982,936
Ensembl chrNW_004624735:12,972,779...12,977,860 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chrNW_004624764:5,656,207...5,671,260
Ensembl chrNW_004624764:5,656,229...5,671,260 		JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 acts_upstream_of_or_within ISO (PMID:24797518) MGI PMID:24797518 NCBI chrNW_004624786:943,015...961,828
Ensembl chrNW_004624786:948,923...961,800 		JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 involved_in ISO (PMID:24475161) CACAO PMID:24475161 NCBI chrNW_004624771:449,761...490,372
Ensembl chrNW_004624771:449,992...489,693 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) HGNC PMID:28195531 NCBI chrNW_004624849:3,147,251...3,159,358
Ensembl chrNW_004624849:3,149,121...3,159,273 		JBrowse link
G Tsc1 TSC complex subunit 1 involved_in ISO PMID:23435171 ParkinsonsUK-UCL PMID:23435171 RGD:10448950 NCBI chrNW_004624760:3,479,028...3,536,612
Ensembl chrNW_004624760:3,498,692...3,532,011 		JBrowse link
G Tsc2 TSC complex subunit 2 ISO RGD PMID:24599401 RGD:11568679 NCBI chrNW_004624913:166,931...203,008
Ensembl chrNW_004624913:166,931...202,953 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:22622177) UniProt PMID:22622177 NCBI chrNW_004624801:8,177,164...8,214,169
Ensembl chrNW_004624801:8,176,902...8,211,592 		JBrowse link
negative regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004624824:8,174,653...8,400,760
Ensembl chrNW_004624824:8,174,610...8,400,723 		JBrowse link
G Fbxl4 F-box and leucine rich repeat protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624810:6,172,807...6,238,045
Ensembl chrNW_004624810:6,185,748...6,239,481 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chrNW_004624764:5,656,207...5,671,260
Ensembl chrNW_004624764:5,656,229...5,671,260 		JBrowse link
G Pptc7 protein phosphatase targeting COQ7 involved_in ISO (PMID:38992176) UniProt PMID:38992176 NCBI chrNW_004624747:21,320,525...21,358,830
Ensembl chrNW_004624747:21,320,617...21,358,904 		JBrowse link
G Rnf41 ring finger protein 41 acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004624802:11,781,748...11,811,412
Ensembl chrNW_004624802:11,781,725...11,810,402 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within ISO (PMID:22044588) MGI PMID:22044588 NCBI chrNW_004624860:1,416,419...1,455,953
Ensembl chrNW_004624860:1,417,131...1,457,717 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (PMID:22044588) MGI PMID:22044588 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218 		JBrowse link
G Tspo translocator protein involved_in ISO (PMID:25470454) ParkinsonsUK-UCL PMID:25470454 NCBI chrNW_004624752:5,814,784...5,820,250
Ensembl chrNW_004624752:5,814,784...5,820,141 		JBrowse link
G Usp30 ubiquitin specific peptidase 30 ISO RGD PMID:24896179 RGD:13208875 NCBI chrNW_004624747:12,219,139...12,248,614
Ensembl chrNW_004624747:12,184,297...12,250,687 		JBrowse link
negative regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htra2 HtrA serine peptidase 2 involved_in ISO (PMID:24709290) ParkinsonsUK-UCL PMID:24709290 NCBI chrNW_004624749:28,980,375...28,983,719
Ensembl chrNW_004624749:28,980,362...28,983,869 		JBrowse link
G Vps13c vacuolar protein sorting 13 homolog C involved_in ISO (PMID:26942284) ParkinsonsUK-UCL PMID:26942284 NCBI chrNW_004624781:10,259,971...10,414,421
Ensembl chrNW_004624781:10,259,976...10,413,278 		JBrowse link
nucleophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg3 autophagy related 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:35,978,595...36,004,900 JBrowse link
G LOC101703150 ubiquitin-like-conjugating enzyme ATG3 pseudogene involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624901:1,933,230...1,934,108 JBrowse link
pexophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acbd5 acyl-CoA binding domain containing 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624796:2,261,009...2,297,982 JBrowse link
G Atm ATM serine/threonine kinase involved_in ISO (PMID:26344566) UniProt PMID:26344566 NCBI chrNW_004624784:2,933,172...3,080,131
Ensembl chrNW_004624784:2,937,499...3,078,216 		JBrowse link
G Pex2 peroxisomal biogenesis factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624744:14,227,430...14,245,082
Ensembl chrNW_004624744:14,240,570...14,245,183 		JBrowse link
G Pex5 peroxisomal biogenesis factor 5 involved_in ISO (PMID:26344566) UniProt PMID:26344566 NCBI chrNW_004624860:3,771,949...3,790,982
Ensembl chrNW_004624860:3,771,963...3,790,985 		JBrowse link
G Pjvk pejvakin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624844:424,903...432,841
Ensembl chrNW_004624844:426,636...433,043 		JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO (PMID:26344566) UniProt PMID:26344566 NCBI chrNW_004624733:42,689,454...42,700,916
Ensembl chrNW_004624733:42,691,841...42,700,916 		JBrowse link
piecemeal microautophagy of the nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:6,046,073...6,056,321
Ensembl chrNW_004624733:6,045,432...6,060,784 		JBrowse link
G Atg13 autophagy related 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:1,924,672...1,953,868 JBrowse link
G Atg2a autophagy related 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:21,480,320...21,507,934
Ensembl chrNW_004624767:21,488,404...21,507,528 		JBrowse link
G Atg2b autophagy related 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624734:7,015,356...7,097,392
Ensembl chrNW_004624734:7,015,672...7,096,348 		JBrowse link
G Atg4a autophagy related 4A cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624803:8,336,123...8,407,354
Ensembl chrNW_004624803:8,337,042...8,407,222 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624847:5,605,818...5,629,729
Ensembl chrNW_004624847:5,605,844...5,629,891 		JBrowse link
G Atg4c autophagy related 4C cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624742:31,061,869...31,130,786
Ensembl chrNW_004624742:31,060,376...31,127,740 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:2,617,853...2,624,756
Ensembl chrNW_004624828:2,617,773...2,624,756 		JBrowse link
G Atg5 autophagy related 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624780:15,987,483...16,124,158
Ensembl chrNW_004624780:15,987,397...16,124,151 		JBrowse link
G Atg7 autophagy related 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Atg9a autophagy related 9A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:5,787,525...5,797,536
Ensembl chrNW_004624823:5,787,601...5,797,534 		JBrowse link
G Atg9b autophagy related 9B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624800:5,589,366...5,600,253
Ensembl chrNW_004624800:5,591,297...5,598,739 		JBrowse link
G LOC101712848 serine/threonine-protein kinase ULK2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624849:6,353,989...6,447,986
Ensembl chrNW_004624849:6,354,678...6,448,026 		JBrowse link
G LOC101713718 autophagy-related protein 13-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:44,641,182...44,642,543 JBrowse link
G LOC101721047 RB1-inducible coiled-coil protein 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624784:5,426,159...5,447,188 JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:2,778,191...2,860,762 JBrowse link
G Snx30 sorting nexin family member 30 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624760:22,138,646...22,261,392
Ensembl chrNW_004624760:22,144,510...22,261,296 		JBrowse link
G Snx7 sorting nexin 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624857:1,253,148...1,365,322
Ensembl chrNW_004624857:1,252,995...1,365,308 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:27,680,994...27,697,342
Ensembl chrNW_004624747:27,681,033...27,695,966 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624894:53,677...59,807
Ensembl chrNW_004624894:54,683...59,716 		JBrowse link
positive regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag3 BAG cochaperone 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624737:27,171,402...27,195,008
Ensembl chrNW_004624737:27,171,402...27,195,004 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISO (PMID:22017874) UniProt PMID:22017874 NCBI chrNW_004624741:1,566,380...1,635,365 JBrowse link
G Hspb8 heat shock protein family B (small) member 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:14,383,600...14,397,440
Ensembl chrNW_004624747:14,383,421...14,397,528 		JBrowse link
G Htt huntingtin involved_in ISO (PMID:25686248) ParkinsonsUK-UCL PMID:25686248 NCBI chrNW_004624755:24,602,955...24,729,584
Ensembl chrNW_004624755:24,603,490...24,729,333 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in ISO (PMID:31857589) UniProt PMID:31857589 NCBI chrNW_004624767:20,668,759...20,675,367
Ensembl chrNW_004624767:20,666,763...20,675,164 		JBrowse link
G Zdhhc19 zinc finger DHHC-type palmitoyltransferase 19 involved_in ISO (PMID:37802024) UniProt PMID:37802024 NCBI chrNW_004624730:61,357,276...61,405,048
Ensembl chrNW_004624730:61,362,941...61,370,514 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in ISO (PMID:30952800), (PMID:31271352) UniProt PMID:30952800 PMID:31271352 NCBI chrNW_004624767:21,480,320...21,507,934
Ensembl chrNW_004624767:21,488,404...21,507,528 		JBrowse link
G Atg7 autophagy related 7 ISO RGD PMID:33372336 RGD:407571673 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Becn1 beclin 1 ISO RGD PMID:25561470 RGD:11561937 NCBI chrNW_004624795:1,386,154...1,406,314
Ensembl chrNW_004624795:1,385,756...1,405,714 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO (PMID:21072319) BHF-UCL PMID:21072319 NCBI chrNW_004624772:4,873,473...4,950,868
Ensembl chrNW_004624772:4,873,468...4,953,655 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:7,997,803...8,044,758
Ensembl chrNW_004624760:7,998,107...8,032,972 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004624796:5,963,005...6,113,081
Ensembl chrNW_004624796:5,962,999...6,113,087 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004624795:3,907,891...3,931,246
Ensembl chrNW_004624795:3,908,037...3,931,430 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004624802:10,359,891...10,370,931
Ensembl chrNW_004624802:10,359,888...10,370,909 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004624732:34,450,616...34,593,675
Ensembl chrNW_004624732:34,450,630...34,593,675 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004624835:3,764,480...3,826,271
Ensembl chrNW_004624835:3,765,114...3,826,155 		JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO (PMID:24056301) UniProt PMID:24056301 NCBI chrNW_004624732:24,804,794...24,841,744
Ensembl chrNW_004624732:24,803,311...24,821,038 		JBrowse link
G Sh3glb1 SH3 domain containing GRB2 like, endophilin B1 involved_in ISO (PMID:21068542) UniProt PMID:21068542 NCBI chrNW_004624742:10,845,333...10,883,705 JBrowse link
G Snx18 sorting nexin 18 involved_in ISO (PMID:29437695) UniProt PMID:29437695 NCBI chrNW_004624759:4,851,014...4,879,365
Ensembl chrNW_004624759:4,850,555...4,879,478 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO (PMID:32513819) UniProt PMID:32513819 NCBI chrNW_004624760:22,138,646...22,261,392
Ensembl chrNW_004624760:22,144,510...22,261,296 		JBrowse link
G Snx4 sorting nexin 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:1,522,467...1,585,793
Ensembl chrNW_004624731:1,522,098...1,586,066 		JBrowse link
G Snx7 sorting nexin 7 involved_in ISO (PMID:32513819) UniProt PMID:32513819 NCBI chrNW_004624857:1,253,148...1,365,322
Ensembl chrNW_004624857:1,252,995...1,365,308 		JBrowse link
G Trim32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:18,577,764...18,600,869
Ensembl chrNW_004624760:18,585,279...18,599,659 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO RGD PMID:23448468 RGD:13208863 NCBI chrNW_004624747:27,680,994...27,697,342
Ensembl chrNW_004624747:27,681,033...27,695,966 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO (PMID:31271352) UniProt PMID:31271352 NCBI chrNW_004624893:845,689...852,221
Ensembl chrNW_004624893:845,701...852,244 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:31271352) UniProt PMID:31271352 NCBI chrNW_004624870:3,487,814...3,518,206
Ensembl chrNW_004624870:3,486,375...3,518,193 		JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 involved_in ISO (PMID:23708524) GO_Central PMID:23708524 NCBI chrNW_004624774:8,211,723...8,215,962
Ensembl chrNW_004624774:8,211,984...8,213,240 		JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:5,259,976...5,281,958
Ensembl chrNW_004624795:5,265,141...5,283,719 		JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004624824:8,174,653...8,400,760
Ensembl chrNW_004624824:8,174,610...8,400,723 		JBrowse link
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:74,923,072...74,982,882
Ensembl chrNW_004624730:74,923,027...74,982,990 		JBrowse link
G Irgm immunity related GTPase M involved_in ISO (PMID:16888103) UniProt PMID:16888103 NCBI chrNW_004624733:41,241,488...41,248,162 JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) HGNC PMID:28195531 NCBI chrNW_004624849:3,147,251...3,159,358
Ensembl chrNW_004624849:3,149,121...3,159,273 		JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) UniProt PMID:23023224 NCBI chrNW_004624750:359,130...379,454
Ensembl chrNW_004624750:357,222...379,356 		JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl1 ELAV like RNA binding protein 1 ISO RGD PMID:33372336 RGD:407571673 NCBI chrNW_004624828:913,001...948,826
Ensembl chrNW_004624828:914,141...948,831 		JBrowse link
positive regulation of autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Znrf1 zinc and ring finger 1 involved_in ISO (PMID:38360932) FlyBase PMID:38360932 NCBI chrNW_004624746:11,847,627...11,954,637
Ensembl chrNW_004624746:11,848,425...11,954,784 		JBrowse link
G Znrf2 zinc and ring finger 2 involved_in ISO (PMID:38360932) FlyBase PMID:38360932 NCBI chrNW_004624739:360,118...497,626
Ensembl chrNW_004624739:385,359...497,597 		JBrowse link
positive regulation of lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 involved_in ISO (PMID:23708524) GO_Central PMID:23708524 NCBI chrNW_004624774:8,211,723...8,215,962
Ensembl chrNW_004624774:8,211,984...8,213,240 		JBrowse link
G Htt huntingtin involved_in ISO (PMID:25686248) ParkinsonsUK-UCL PMID:25686248 NCBI chrNW_004624755:24,602,955...24,729,584
Ensembl chrNW_004624755:24,603,490...24,729,333 		JBrowse link
G Sesn2 sestrin 2 acts_upstream_of_or_within ISO (PMID:22958918) MGI PMID:22958918 NCBI chrNW_004624764:12,087,901...12,135,145
Ensembl chrNW_004624764:12,087,858...12,120,914 		JBrowse link
G Sptlc1 serine palmitoyltransferase long chain base subunit 1 acts_upstream_of_or_within ISO (PMID:25332431) MGI PMID:25332431 NCBI chrNW_004624868:317,992...393,776
Ensembl chrNW_004624868:318,059...393,773 		JBrowse link
G Sptlc2 serine palmitoyltransferase long chain base subunit 2 acts_upstream_of_or_within ISO (PMID:25332431) MGI PMID:25332431 NCBI chrNW_004624734:24,281,482...24,400,870 JBrowse link
positive regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 acts_upstream_of_or_within ISO (PMID:19273585) MGI PMID:19273585 NCBI chrNW_004624737:14,848,355...14,863,731
Ensembl chrNW_004624737:14,848,350...14,862,965 		JBrowse link
G Bnip3l BCL2 interacting protein 3 like acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19273585) MGI
Ensembl		 PMID:19273585 GO_REF:0000107 NCBI chrNW_004624758:21,284,165...21,309,957
Ensembl chrNW_004624758:21,284,167...21,310,398 		JBrowse link
G C9orf72 C9orf72-SMCR8 complex subunit involved_in ISO (PMID:27103069)
(PMID:27103069), (PMID:27334615)		 HGNC PMID:27103069 PMID:27334615 NCBI chrNW_004624736:31,737,606...31,787,900
Ensembl chrNW_004624736:31,751,268...31,788,253 		JBrowse link
G Dcn decorin acts_upstream_of_or_within ISO (PMID:23798385) MGI PMID:23798385 NCBI chrNW_004624750:15,466,938...15,517,475
Ensembl chrNW_004624750:15,470,968...15,516,365 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO (PMID:20453062) MGI PMID:20453062 NCBI chrNW_004624753:8,715,898...8,805,728
Ensembl chrNW_004624753:8,715,898...8,804,194 		JBrowse link
G Gnai3 G protein subunit alpha i3 involved_in ISO (PMID:12642577) UniProt PMID:12642577 NCBI chrNW_004624772:5,272,086...5,309,834 JBrowse link
G Gpsm1 G protein signaling modulator 1 involved_in ISO (PMID:12642577) UniProt PMID:12642577 NCBI chrNW_004624760:1,507,255...1,529,170
Ensembl chrNW_004624760:1,507,242...1,529,163 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19273585) Ensembl
MGI		 PMID:19273585 GO_REF:0000107 NCBI chrNW_004624734:39,414,458...39,471,705
Ensembl chrNW_004624734:39,411,824...39,471,705 		JBrowse link
G Hmox1 heme oxygenase 1 acts_upstream_of_or_within ISO (PMID:20705711) MGI PMID:20705711 NCBI chrNW_004624750:341,699...346,005
Ensembl chrNW_004624750:342,146...345,887 		JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma involved_in ISO (PMID:23778976) ParkinsonsUK-UCL PMID:23778976 NCBI chrNW_004624946:997,571...1,015,748
Ensembl chrNW_004624946:996,814...1,013,379 		JBrowse link
G Il4 interleukin 4 involved_in ISO (PMID:26416964) UniProt PMID:26416964 NCBI chrNW_004624733:39,412,800...39,420,079 JBrowse link
G Kdr kinase insert domain receptor acts_upstream_of_or_within ISO (PMID:23798385) MGI PMID:23798385 NCBI chrNW_004624761:14,330,224...14,380,680
Ensembl chrNW_004624761:14,330,489...14,379,051 		JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004624733:34,504,259...34,593,223
Ensembl chrNW_004624733:34,507,618...34,560,901 		JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 involved_in ISO (PMID:23778976) ParkinsonsUK-UCL PMID:23778976 NCBI chrNW_004624799:3,554,644...3,623,317
Ensembl chrNW_004624799:3,554,678...3,622,289 		JBrowse link
G Pafah1b2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004624784:12,583,430...12,619,816 JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO (PMID:17476689) MGI PMID:17476689 NCBI chrNW_004624893:694,944...700,068
Ensembl chrNW_004624893:694,928...700,062 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:20871098) ParkinsonsUK-UCL PMID:20871098 NCBI chrNW_004624764:5,656,207...5,671,260
Ensembl chrNW_004624764:5,656,229...5,671,260 		JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in ISO (PMID:23357852) UniProt PMID:23357852 NCBI chrNW_004624770:17,636,031...17,654,863
Ensembl chrNW_004624770:17,635,901...17,653,919 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624823:6,908,113...6,927,724
Ensembl chrNW_004624823:6,908,636...6,925,863 		JBrowse link
G Scoc short coiled-coil protein involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004625006:15,912...23,559
Ensembl chrNW_004625006:15,933...23,559 		JBrowse link
G Sesn1 sestrin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624916:231,168...332,423
Ensembl chrNW_004624916:230,348...332,985 		JBrowse link
G Sesn2 sestrin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:12,087,901...12,135,145
Ensembl chrNW_004624764:12,087,858...12,120,914 		JBrowse link
G Sesn3 sestrin 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:39,859,414...39,930,642
Ensembl chrNW_004624735:39,866,097...39,929,614 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:18296641)
(PMID:18296641), (PMID:21189328)		 UniProt PMID:18296641 PMID:21189328 NCBI chrNW_004624754:2,304,476...2,332,705
Ensembl chrNW_004624754:2,304,634...2,330,946 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624743:32,277,197...32,283,346
Ensembl chrNW_004624743:32,273,385...32,283,235 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004624794:12,766,734...12,791,590
Ensembl chrNW_004624794:12,766,806...12,804,611 		JBrowse link
G Tbk1 TANK binding kinase 1 involved_in ISO (PMID:27103069) HGNC PMID:27103069 NCBI chrNW_004624802:3,861,821...3,914,061
Ensembl chrNW_004624802:3,862,709...3,914,028 		JBrowse link
G Trim13 tripartite motif containing 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624748:4,683,518...4,765,944 JBrowse link
G Tsc1 TSC complex subunit 1 ISO RGD PMID:23435171 RGD:10448950 NCBI chrNW_004624760:3,479,028...3,536,612
Ensembl chrNW_004624760:3,498,692...3,532,011 		JBrowse link
G Tsc2 TSC complex subunit 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:23778976)
(PMID:20453062)		 ParkinsonsUK-UCL
MGI		 PMID:20453062 PMID:23778976 NCBI chrNW_004624913:166,931...203,008
Ensembl chrNW_004624913:166,931...202,953 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004624805:6,813,100...6,898,686 JBrowse link
G Wdr24 WD repeat domain 24 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624913:1,496,029...1,501,822
Ensembl chrNW_004624913:1,496,029...1,501,800 		JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO (PMID:30217973) UniProt PMID:30217973 NCBI chrNW_004624767:1,967,002...2,160,102
Ensembl chrNW_004624767:1,966,898...2,160,465 		JBrowse link
G Atg7 autophagy related 7 ISO RGD PMID:37042059 RGD:407532700 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Cers1 ceramide synthase 1 involved_in ISO (PMID:22922758) UniProt PMID:22922758 NCBI chrNW_004624908:1,937,007...1,949,780
Ensembl chrNW_004624908:1,941,393...1,949,760 		JBrowse link
G Dele1 DAP3 binding cell death enhancer 1 involved_in ISO (PMID:38340717) UniProt PMID:38340717 NCBI chrNW_004624774:1,135,680...1,154,628
Ensembl chrNW_004624774:1,136,731...1,150,625 		JBrowse link
G Eif2ak1 eukaryotic translation initiation factor 2 alpha kinase 1 involved_in ISO (PMID:38340717) UniProt PMID:38340717 NCBI chrNW_004624740:31,223,583...31,306,749
Ensembl chrNW_004624740:31,274,483...31,306,430 		JBrowse link
G Fbxo7 F-box protein 7 involved_in ISO (PMID:26310625) ParkinsonsUK-UCL PMID:26310625 RGD:11536096 NCBI chrNW_004624750:1,977,666...1,997,408
Ensembl chrNW_004624750:1,977,761...1,997,231 		JBrowse link
G Htt huntingtin involved_in ISO (PMID:25686248) ParkinsonsUK-UCL PMID:25686248 NCBI chrNW_004624755:24,602,955...24,729,584
Ensembl chrNW_004624755:24,603,490...24,729,333 		JBrowse link
G Irgm immunity related GTPase M involved_in ISO (PMID:21102437), (PMID:32939830)
(PMID:33510463)		 UniProt PMID:21102437 PMID:32939830 PMID:33510463 NCBI chrNW_004624733:41,241,488...41,248,162 JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 involved_in ISO (PMID:31919280) UniProt PMID:31919280 NCBI chrNW_004624757:5,956,873...6,000,052
Ensembl chrNW_004624757:5,958,486...6,000,103 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:26310625) RGD
ParkinsonsUK-UCL		 PMID:26310625 PMID:28608965 RGD:13432560 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747 		JBrowse link
G Slc25a4 solute carrier family 25 member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624769:15,989,527...15,993,609
Ensembl chrNW_004624769:15,989,547...15,997,680 		JBrowse link
G Slc25a5 solute carrier family 25 member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624895:3,472,810...3,475,713
Ensembl chrNW_004624895:3,472,791...3,477,568 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO PMID:29934347 UniProt PMID:29934347 RGD:405650300 NCBI chrNW_004624913:1,491,873...1,494,249
Ensembl chrNW_004624913:1,491,991...1,494,249 		JBrowse link
G Ube2a ubiquitin conjugating enzyme E2 A involved_in ISO (PMID:23685073) UniProt PMID:23685073 NCBI chrNW_004624895:3,544,410...3,553,981 JBrowse link
G Vps13d vacuolar protein sorting 13 homolog D involved_in ISO (PMID:29307555) UniProt PMID:29307555 NCBI chrNW_004624818:632,276...885,450
Ensembl chrNW_004624818:632,278...885,445 		JBrowse link
positive regulation of reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in ISO (PMID:32851973)
(PMID:36543799)		 UniProt PMID:32851973 PMID:36543799 NCBI chrNW_004624795:4,594,131...4,602,435
Ensembl chrNW_004624795:4,594,207...4,602,583 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:36543799) UniProt PMID:36543799 NCBI chrNW_004624741:4,292,256...4,305,424
Ensembl chrNW_004624741:4,292,256...4,305,504 		JBrowse link
G Ufl1 UFM1 specific ligase 1 involved_in ISO (PMID:36543799) UniProt PMID:36543799 NCBI chrNW_004624810:8,804,330...8,832,460
Ensembl chrNW_004624810:8,805,964...8,832,358 		JBrowse link
positive regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5if1 ATP synthase inhibitory factor subunit 1 involved_in ISO (PMID:24005319) ParkinsonsUK-UCL PMID:24005319 NCBI chrNW_004624764:12,068,518...12,070,542
Ensembl chrNW_004624764:12,068,638...12,072,190 		JBrowse link
G Cdc37 cell division cycle 37, HSP90 cochaperone involved_in ISO (PMID:21855797) ParkinsonsUK-UCL PMID:21855797 NCBI chrNW_004624828:2,523,761...2,533,387
Ensembl chrNW_004624828:2,521,272...2,535,475 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) ARUK-UCL PMID:23707074 NCBI chrNW_004624885:2,315,371...2,321,327
Ensembl chrNW_004624885:2,315,142...2,321,327 		JBrowse link
G Hdac6 histone deacetylase 6 involved_in ISO (PMID:20457763) ParkinsonsUK-UCL PMID:20457763 NCBI chrNW_004624893:608,744...627,600
Ensembl chrNW_004624893:608,540...628,580 		JBrowse link
G Hk2 hexokinase 2 involved_in ISO (PMID:23962723) ParkinsonsUK-UCL PMID:23962723 NCBI chrNW_004624749:28,618,146...28,718,852
Ensembl chrNW_004624749:28,618,030...28,689,794 		JBrowse link
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in ISO (PMID:30217973) CACAO PMID:30217973 NCBI chrNW_004624909:745,141...891,421
Ensembl chrNW_004624909:745,651...859,233 		JBrowse link
G Mul1 mitochondrial E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:5,560,071...5,566,763
Ensembl chrNW_004624764:5,557,560...5,586,964 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:20871098) ParkinsonsUK-UCL PMID:20871098 NCBI chrNW_004624764:5,656,207...5,671,260
Ensembl chrNW_004624764:5,656,229...5,671,260 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:20871098), (PMID:23212910)
(PMID:20457763)		 ParkinsonsUK-UCL PMID:20457763 PMID:20871098 PMID:23212910 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747 		JBrowse link
G Tomm7 translocase of outer mitochondrial membrane 7 involved_in ISO (PMID:24270810) ParkinsonsUK-UCL PMID:24270810 NCBI chrNW_004624739:7,854,226...7,863,387
Ensembl chrNW_004624739:7,853,621...7,864,757 		JBrowse link
G Vdac1 voltage dependent anion channel 1 involved_in ISO (PMID:32047033) UniProt PMID:32047033 NCBI chrNW_004624733:38,183,376...38,210,368
Ensembl chrNW_004624733:38,184,016...38,210,478 		JBrowse link
positive regulation of xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irgm immunity related GTPase M involved_in ISO (PMID:25891078) UniProt PMID:25891078 NCBI chrNW_004624733:41,241,488...41,248,162 JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:7,997,803...8,044,758
Ensembl chrNW_004624760:7,998,107...8,032,972 		JBrowse link
G Mapk3 mitogen-activated protein kinase 3 acts_upstream_of_or_within ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004624782:13,150,824...13,158,327
Ensembl chrNW_004624782:13,152,039...13,159,113 		JBrowse link
G Nod1 nucleotide binding oligomerization domain containing 1 acts_upstream_of_or_within ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004624739:285,791...339,752
Ensembl chrNW_004624739:285,689...341,956 		JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 acts_upstream_of_or_within ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004624757:5,956,873...6,000,052
Ensembl chrNW_004624757:5,958,486...6,000,103 		JBrowse link
G Optn optineurin involved_in ISO (PMID:21617041) ParkinsonsUK-UCL PMID:21617041 NCBI chrNW_004624805:5,683,095...5,717,558
Ensembl chrNW_004624805:5,683,021...5,721,336 		JBrowse link
G Ripk2 receptor interacting serine/threonine kinase 2 acts_upstream_of_or_within ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004624744:2,194,339...2,227,498
Ensembl chrNW_004624744:2,201,319...2,226,890 		JBrowse link
G Rnf31 ring finger protein 31 involved_in ISO (PMID:28481331) UniProt PMID:28481331 NCBI chrNW_004624820:8,376,530...8,388,596
Ensembl chrNW_004624820:8,375,871...8,388,569 		JBrowse link
G Tbk1 TANK binding kinase 1 involved_in ISO (PMID:21617041) ParkinsonsUK-UCL PMID:21617041 NCBI chrNW_004624802:3,861,821...3,914,061
Ensembl chrNW_004624802:3,862,709...3,914,028 		JBrowse link
G Tlr2 toll like receptor 2 acts_upstream_of_or_within ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004624858:4,931,820...4,984,175
Ensembl chrNW_004624858:4,979,485...4,981,833 		JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004624843:5,797,725...5,838,768
Ensembl chrNW_004624843:5,805,069...5,838,741 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) MGI PMID:23918802 NCBI chrNW_004624780:15,987,483...16,124,158
Ensembl chrNW_004624780:15,987,397...16,124,151 		JBrowse link
G Irgm immunity related GTPase M involved_in ISO (PMID:28389568) UniProt PMID:28389568 NCBI chrNW_004624733:41,241,488...41,248,162 JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004624740:28,306,655...28,346,430
Ensembl chrNW_004624740:28,306,052...28,346,508 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip2 ARF interacting protein 2 involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004624817:7,993,830...7,998,729
Ensembl chrNW_004624817:7,991,572...7,997,963 		JBrowse link
G Atg13 autophagy related 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:1,924,672...1,953,868 JBrowse link
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004624843:5,797,725...5,838,768
Ensembl chrNW_004624843:5,805,069...5,838,741 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004624847:5,605,818...5,629,729
Ensembl chrNW_004624847:5,605,844...5,629,891 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624828:2,617,853...2,624,756
Ensembl chrNW_004624828:2,617,773...2,624,756 		JBrowse link
G Atg9a autophagy related 9A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:5,787,525...5,797,536
Ensembl chrNW_004624823:5,787,601...5,797,534 		JBrowse link
G Atg9b autophagy related 9B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624800:5,589,366...5,600,253
Ensembl chrNW_004624800:5,591,297...5,598,739 		JBrowse link
G LOC101713718 autophagy-related protein 13-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:44,641,182...44,642,543 JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004624858:1,797,123...2,471,017
Ensembl chrNW_004624858:1,797,123...2,471,867 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within ISO (PMID:23455425) MGI PMID:23455425 NCBI chrNW_004624818:1,041,371...1,065,061
Ensembl chrNW_004624818:1,041,369...1,065,023 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) MGI PMID:23455425 NCBI chrNW_004624734:125,190...184,690
Ensembl chrNW_004624734:125,190...184,756 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004624779:16,307,875...16,435,567
Ensembl chrNW_004624779:16,307,800...16,434,169 		JBrowse link
G Stx17 syntaxin 17 acts_upstream_of_or_within ISO (PMID:23455425) MGI PMID:23455425 NCBI chrNW_004624825:967,493...1,066,513
Ensembl chrNW_004624825:972,755...1,066,597 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within
involved_in		 ISO (PMID:24954904)
(PMID:28561066)		 MGI
UniProt		 PMID:24954904 PMID:28561066 NCBI chrNW_004624740:28,306,655...28,346,430
Ensembl chrNW_004624740:28,306,052...28,346,508 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf72 C9orf72-SMCR8 complex subunit involved_in ISO (PMID:27334615) UniProt PMID:27334615 NCBI chrNW_004624736:31,737,606...31,787,900
Ensembl chrNW_004624736:31,751,268...31,788,253 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:5,035,045...5,072,555
Ensembl chrNW_004624747:5,035,200...5,070,332 		JBrowse link
G Efnb1 ephrin B1 acts_upstream_of_positive_effect
involved_in		 ISO
IEA		 (PMID:33280498) UniProt
Ensembl		 PMID:33280498 GO_REF:0000107 NCBI chrNW_004624891:1,394,948...1,407,898
Ensembl chrNW_004624891:1,394,852...1,407,959 		JBrowse link
G Ephb2 EPH receptor B2 acts_upstream_of_positive_effect ISO (PMID:33280498) UniProt PMID:33280498 NCBI chrNW_004624764:7,421,818...7,599,800
Ensembl chrNW_004624764:7,421,862...7,593,482 		JBrowse link
G Ift20 intraflagellar transport 20 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chrNW_004624786:928,123...939,515 JBrowse link
G Ift88 intraflagellar transport 88 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chrNW_004624776:16,954,368...17,086,377
Ensembl chrNW_004624776:16,954,507...17,086,337 		JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004624747:6,193,859...6,335,897
Ensembl chrNW_004624747:6,278,779...6,338,438 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO (PMID:23524951) UniProt PMID:23524951 NCBI chrNW_004624818:1,570,155...1,698,264
Ensembl chrNW_004624818:1,570,276...1,698,259 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004624765:7,684,770...7,806,381
Ensembl chrNW_004624765:7,681,875...7,790,704 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:20,091,120...20,098,855
Ensembl chrNW_004624767:20,090,441...20,098,913 		JBrowse link
G Rnf186 ring finger protein 186 involved_in
acts_upstream_of_positive_effect		 IEA
ISO		 (PMID:33280498) Ensembl
UniProt		 PMID:33280498 GO_REF:0000107 NCBI chrNW_004624764:4,897,234...4,898,470 JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within ISO (PMID:23093945) MGI PMID:23093945 NCBI chrNW_004624754:24,141,072...24,143,460
Ensembl chrNW_004624754:24,141,072...24,143,489 		JBrowse link
G Tbc1d14 TBC1 domain family member 14 involved_in ISO (PMID:22613832) BHF-UCL PMID:22613832 NCBI chrNW_004624755:23,164,315...23,255,023
Ensembl chrNW_004624755:23,164,288...23,252,771 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:20529957) UniProt PMID:20529957 NCBI chrNW_004624910:1,547,942...1,551,323
Ensembl chrNW_004624910:1,548,249...1,550,126 		JBrowse link
regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in ISO (PMID:22342342) ComplexPortal PMID:22342342 NCBI chrNW_004624733:6,046,073...6,056,321
Ensembl chrNW_004624733:6,045,432...6,060,784 		JBrowse link
G Atg5 autophagy related 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624780:15,987,483...16,124,158
Ensembl chrNW_004624780:15,987,397...16,124,151 		JBrowse link
G Clec16a C-type lectin domain containing 16A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624824:8,174,653...8,400,760
Ensembl chrNW_004624824:8,174,610...8,400,723 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624782:12,995,277...13,004,980
Ensembl chrNW_004624782:12,995,277...13,005,087 		JBrowse link
G Tbc1d25 TBC1 domain family member 25 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624893:364,004...390,517
Ensembl chrNW_004624893:363,688...393,301 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISO (PMID:22342342) ComplexPortal PMID:22342342 NCBI chrNW_004624740:31,676,044...31,704,828
Ensembl chrNW_004624740:31,676,044...31,704,820 		JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:22186024 GO_REF:0000118 RGD:13442482 NCBI chrNW_004624764:2,614,541...2,631,972
Ensembl chrNW_004624764:2,614,827...2,631,793 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624782:12,995,277...13,004,980
Ensembl chrNW_004624782:12,995,277...13,005,087 		JBrowse link
G Dnajc16 DnaJ heat shock protein family (Hsp40) member C16 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:1,792,487...1,844,138
Ensembl chrNW_004624764:1,792,373...1,840,816 		JBrowse link
regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in ISO (PMID:10625637) ComplexPortal PMID:10625637 NCBI chrNW_004624884:165,443...220,525 JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:22198378) ParkinsonsUK-UCL PMID:22198378 NCBI chrNW_004624764:2,614,541...2,631,972
Ensembl chrNW_004624764:2,614,827...2,631,793 		JBrowse link
G Atp6v0a1 ATPase H+ transporting V0 subunit a1 involved_in ISO (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chrNW_004624795:1,561,104...1,607,693
Ensembl chrNW_004624795:1,560,995...1,608,067 		JBrowse link
G Becn1 beclin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624795:1,386,154...1,406,314
Ensembl chrNW_004624795:1,385,756...1,405,714 		JBrowse link
G Hdac6 histone deacetylase 6 involved_in ISO (PMID:16192271) BHF-UCL PMID:16192271 NCBI chrNW_004624893:608,744...627,600
Ensembl chrNW_004624893:608,540...628,580 		JBrowse link
G Mtmr8 myotubularin related protein 8 involved_in ISO (PMID:32915229) FlyBase PMID:32915229 NCBI chrNW_004624898:2,528,422...2,630,274 JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in ISO (PMID:10625637) ComplexPortal PMID:10625637 NCBI chrNW_004624779:16,307,875...16,435,567
Ensembl chrNW_004624779:16,307,800...16,434,169 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 involved_in ISO (PMID:10625637) ComplexPortal PMID:10625637 NCBI chrNW_004624730:6,642,195...6,744,480
Ensembl chrNW_004624730:6,642,190...6,744,470 		JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in ISO (PMID:23332761) UniProt PMID:23332761 NCBI chrNW_004624862:3,443,720...3,496,078
Ensembl chrNW_004624862:3,450,078...3,496,142 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624809:6,434,842...6,487,442
Ensembl chrNW_004624809:6,436,658...6,487,251 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624910:1,547,942...1,551,323
Ensembl chrNW_004624910:1,548,249...1,550,126 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO (PMID:20921139) UniProt PMID:20921139 NCBI chrNW_004624747:27,680,994...27,697,342
Ensembl chrNW_004624747:27,681,033...27,695,966 		JBrowse link
regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy10 adenylate cyclase 10 ISO RGD PMID:31172217 RGD:329403053 NCBI chrNW_004624826:5,844,868...5,897,541
Ensembl chrNW_004624826:5,845,001...5,897,497 		JBrowse link
G Bnip3l BCL2 interacting protein 3 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624758:21,284,165...21,309,957
Ensembl chrNW_004624758:21,284,167...21,310,398 		JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004624746:28,012,543...28,064,610
Ensembl chrNW_004624746:28,012,556...28,060,413 		JBrowse link
G Cttn cortactin involved_in ISO (PMID:20457763) ParkinsonsUK-UCL PMID:20457763 NCBI chrNW_004624767:16,842,341...16,884,449
Ensembl chrNW_004624767:16,847,459...16,880,183 		JBrowse link
G Dnm1l dynamin 1 like involved_in ISO (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chrNW_004624778:3,391,690...3,475,548 JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004624858:3,778,842...3,974,351
Ensembl chrNW_004624858:3,775,795...3,873,336 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 involved_in ISO (PMID:28381481), (PMID:31908024) DisProt PMID:28381481 PMID:31908024 NCBI chrNW_004624908:1,713,590...1,720,709 JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004624907:511,919...522,106
Ensembl chrNW_004624907:511,889...522,168 		JBrowse link
G Parl presenilin associated rhomboid like involved_in ISO (PMID:21355049) ParkinsonsUK-UCL PMID:21355049 NCBI chrNW_004624730:72,642,828...72,683,820
Ensembl chrNW_004624730:72,642,925...72,683,820 		JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004624849:3,602,103...3,623,922
Ensembl chrNW_004624849:3,602,261...3,623,465 		JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004624752:6,815,075...6,871,674
Ensembl chrNW_004624752:6,816,468...6,871,567 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004624801:8,177,164...8,214,169
Ensembl chrNW_004624801:8,176,902...8,211,592 		JBrowse link
G Vdac1 voltage dependent anion channel 1 involved_in ISO (PMID:25470454) ParkinsonsUK-UCL PMID:25470454 NCBI chrNW_004624733:38,183,376...38,210,368
Ensembl chrNW_004624733:38,184,016...38,210,478 		JBrowse link
reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:21,480,320...21,507,934
Ensembl chrNW_004624767:21,488,404...21,507,528 		JBrowse link
G Atg2b autophagy related 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624734:7,015,356...7,097,392
Ensembl chrNW_004624734:7,015,672...7,096,348 		JBrowse link
G Atg9a autophagy related 9A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:5,787,525...5,797,536
Ensembl chrNW_004624823:5,787,601...5,797,534 		JBrowse link
G Atg9b autophagy related 9B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624800:5,589,366...5,600,253
Ensembl chrNW_004624800:5,591,297...5,598,739 		JBrowse link
G Bnip3 BCL2 interacting protein 3 involved_in ISO (PMID:22505714) FlyBase PMID:22505714 NCBI chrNW_004624737:14,848,355...14,863,731
Ensembl chrNW_004624737:14,848,350...14,862,965 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:32160526) UniProt PMID:32160526 NCBI chrNW_004624741:4,292,256...4,305,424
Ensembl chrNW_004624741:4,292,256...4,305,504 		JBrowse link
G LOC101712848 serine/threonine-protein kinase ULK2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624849:6,353,989...6,447,986
Ensembl chrNW_004624849:6,354,678...6,448,026 		JBrowse link
G LOC101721047 RB1-inducible coiled-coil protein 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624784:5,426,159...5,447,188 JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:31006538) MGI
TreeGrafter		 PMID:31006538 GO_REF:0000118 NCBI chrNW_004624735:2,778,191...2,860,762 JBrowse link
G Retreg1 reticulophagy regulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:34338405) TreeGrafter
MGI
InterPro		 PMID:34338405 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624751:13,377,583...13,502,144
Ensembl chrNW_004624751:13,376,502...13,501,918 		JBrowse link
G Retreg2 reticulophagy regulator family member 2 acts_upstream_of_or_within ISO (PMID:34338405) MGI PMID:34338405 NCBI chrNW_004624823:5,839,760...5,845,053
Ensembl chrNW_004624823:5,839,760...5,844,967 		JBrowse link
G Retreg3 reticulophagy regulator family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:34338405) InterPro
MGI		 PMID:34338405 GO_REF:0000002 NCBI chrNW_004624795:1,516,339...1,535,162
Ensembl chrNW_004624795:1,516,315...1,535,162 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624760:22,138,646...22,261,392
Ensembl chrNW_004624760:22,144,510...22,261,296 		JBrowse link
G Snx7 sorting nexin 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624857:1,253,148...1,365,322
Ensembl chrNW_004624857:1,252,995...1,365,308 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624743:32,277,197...32,283,346
Ensembl chrNW_004624743:32,273,385...32,283,235 		JBrowse link
G Tex264 testis expressed 264, ER-phagy receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31006538) TreeGrafter
MGI		 PMID:31006538 GO_REF:0000118 NCBI chrNW_004624730:5,387,697...5,416,924
Ensembl chrNW_004624730:5,390,747...5,416,624 		JBrowse link
G Uba5 ubiquitin like modifier activating enzyme 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:8,791,691...8,819,957
Ensembl chrNW_004624730:8,792,854...8,867,707 		JBrowse link
G Ufc1 ubiquitin-fold modifier conjugating enzyme 1 involved_in ISO (PMID:32160526) UniProt PMID:32160526 NCBI chrNW_004624794:223,730...243,519
Ensembl chrNW_004624794:223,730...243,199 		JBrowse link
G Ufl1 UFM1 specific ligase 1 involved_in ISO (PMID:32160526) UniProt PMID:32160526 NCBI chrNW_004624810:8,804,330...8,832,460
Ensembl chrNW_004624810:8,805,964...8,832,358 		JBrowse link
G Ufm1 ubiquitin fold modifier 1 involved_in ISO (PMID:32160526) UniProt PMID:32160526 NCBI chrNW_004624920:1,318,468...1,477,045
Ensembl chrNW_004624920:1,318,511...1,329,839 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:27,680,994...27,697,342
Ensembl chrNW_004624747:27,681,033...27,695,966 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624894:53,677...59,807
Ensembl chrNW_004624894:54,683...59,716 		JBrowse link
ribophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Armc3 armadillo repeat containing 3 involved_in ISO (PMID:34428398) UniProt PMID:34428398 NCBI chrNW_004624796:5,679,159...5,781,173
Ensembl chrNW_004624796:5,678,701...5,778,443 		JBrowse link
G LOC101721047 RB1-inducible coiled-coil protein 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624784:5,426,159...5,447,188 JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:2,778,191...2,860,762 JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irgq immunity related GTPase Q involved_in ISO (PMID:39481378) UniProt PMID:39481378 NCBI chrNW_004624907:1,121,208...1,129,714
Ensembl chrNW_004624907:1,125,465...1,129,088 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chrNW_004624740:32,480,138...32,615,436
Ensembl chrNW_004624740:32,483,092...32,615,260 		JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO (PMID:20810658)
(PMID:27358407)		 MGI PMID:20810658 PMID:27358407 NCBI chrNW_004624757:14,629,607...14,634,274
Ensembl chrNW_004624757:14,631,455...14,634,147 		JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) UniProt PMID:23023224 NCBI chrNW_004624750:359,130...379,454
Ensembl chrNW_004624750:357,222...379,356 		JBrowse link
type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 involved_in ISO (PMID:20457763) ParkinsonsUK-UCL PMID:20457763 NCBI chrNW_004624893:608,744...627,600
Ensembl chrNW_004624893:608,540...628,580 		JBrowse link
G Mfn2 mitofusin 2 involved_in ISO (PMID:23620051) ParkinsonsUK-UCL PMID:23620051 NCBI chrNW_004624818:1,041,371...1,065,061
Ensembl chrNW_004624818:1,041,369...1,065,023 		JBrowse link
G Optn optineurin involved_in ISO (PMID:25294927) ParkinsonsUK-UCL PMID:25294927 NCBI chrNW_004624805:5,683,095...5,717,558
Ensembl chrNW_004624805:5,683,021...5,721,336 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:19029340) ParkinsonsUK-UCL PMID:19029340 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chrNW_004624740:32,480,138...32,615,436
Ensembl chrNW_004624740:32,483,092...32,615,260 		JBrowse link
xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004624843:5,797,725...5,838,768
Ensembl chrNW_004624843:5,805,069...5,838,741 		JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:5,259,976...5,281,958
Ensembl chrNW_004624795:5,265,141...5,283,719 		JBrowse link
G Lgals8 galectin 8 involved_in ISO (PMID:22246324), (PMID:28077878) GO_Central PMID:22246324 PMID:28077878 NCBI chrNW_004624775:14,096,463...14,112,701
Ensembl chrNW_004624775:14,097,181...14,110,929 		JBrowse link
G Mapk3 mitogen-activated protein kinase 3 acts_upstream_of ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004624782:13,150,824...13,158,327
Ensembl chrNW_004624782:13,152,039...13,159,113 		JBrowse link
G Nod1 nucleotide binding oligomerization domain containing 1 acts_upstream_of ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004624739:285,791...339,752
Ensembl chrNW_004624739:285,689...341,956 		JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 acts_upstream_of ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004624757:5,956,873...6,000,052
Ensembl chrNW_004624757:5,958,486...6,000,103 		JBrowse link
G Ripk2 receptor interacting serine/threonine kinase 2 acts_upstream_of ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004624744:2,194,339...2,227,498
Ensembl chrNW_004624744:2,201,319...2,226,890 		JBrowse link
G Rnf213 ring finger protein 213 involved_in ISO (PMID:34012115) UniProt PMID:34012115 NCBI chrNW_004624801:9,472,891...9,574,511 JBrowse link
G Tlr2 toll like receptor 2 acts_upstream_of ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004624858:4,931,820...4,984,175
Ensembl chrNW_004624858:4,979,485...4,981,833 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004624740:28,306,655...28,346,430
Ensembl chrNW_004624740:28,306,052...28,346,508 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17640
    cellular process 17222
      process utilizing autophagic mechanism 517
        autophagy 517
          macroautophagy 321
            aggrephagy + 17
            amphisome-lysosome fusion 0
            autophagosome maturation + 63
            autophagosome organization + 122
            autophagosome-endosome fusion 1
            autophagosome-lysosome fusion + 12
            glycophagy 10
            lipophagy + 8
            lysophagy 0
            mitophagy + 82
            negative regulation of macroautophagy + 37
            nucleophagy + 22
            pexophagy 6
            positive regulation of macroautophagy + 97
            proteaphagy 0
            regulation of macroautophagy + 151
            reticulophagy + 23
            ribophagy 3
            xenophagy + 15
Path 2
Term Annotations click to browse term
  biological_process 17640
    cellular process 17222
      metabolic process 11022
        catabolic process 2395
          autophagy 517
            macroautophagy 321
              aggrephagy + 17
              amphisome-lysosome fusion 0
              autophagosome maturation + 63
              autophagosome organization + 122
              autophagosome-endosome fusion 1
              autophagosome-lysosome fusion + 12
              glycophagy 10
              lipophagy + 8
              lysophagy 0
              mitophagy + 82
              negative regulation of macroautophagy + 37
              nucleophagy + 22
              pexophagy 6
              positive regulation of macroautophagy + 97
              proteaphagy 0
              regulation of macroautophagy + 151
              reticulophagy + 23
              ribophagy 3
              xenophagy + 15
paths to the root