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ONTOLOGY REPORT - ANNOTATIONS

Term:macroautophagy
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Accession:GO:0016236 term browser browse the term
Definition:The autophagic process that proceeds via the formation of an autophagosome.
Synonyms:narrow_synonym: selective autophagy
 broad_synonym: autophagy
 alt_id: GO:0034262
 xref: Reactome:R-HSA-1632852 "Macroautophagy";   Reactome:R-HSA-5205685 "PINK1-PRKN Mediated Mitophagy";   Reactome:R-HSA-8934903 "Receptor Mediated Mitophagy"


show annotations for term's descendants           Sort by:
macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IMP
ISO		 (PMID:11266458) ComplexPortal
GO_Central		 PMID:11266458 GO_REF:0000114 GO_REF:0000119 NCBI chr18:46,865,484...46,874,683
Ensembl chr18:46,863,211...46,874,647 		JBrowse link
G Atg14 autophagy related 14 involved_in ISO GO_Central GO_REF:0000119 NCBI chr14:47,778,350...47,805,891
Ensembl chr14:47,778,350...47,808,106 		JBrowse link
G Atg16l1 autophagy related 16 like 1 involved_in IMP
ISO		 (PMID:11266458) ComplexPortal
GO_Central		 PMID:11266458 GO_REF:0000119 NCBI chr 1:87,683,730...87,720,150
Ensembl chr 1:87,683,592...87,720,150 		JBrowse link
G Atg16l2 autophagy related 16 like 2 involved_in IMP (PMID:11266458) ComplexPortal PMID:11266458 NCBI chr 7:100,935,521...100,951,474
Ensembl chr 7:100,912,241...100,951,458 		JBrowse link
G Atg3 autophagy related 3 acts_upstream_of_or_within IMP (PMID:24035364) MGI PMID:24035364 NCBI chr16:44,979,192...45,008,901
Ensembl chr16:44,979,148...45,008,901 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within
involved_in		 IMP
ISO		 (PMID:22496425), (PMID:23704209), (PMID:24035364)
(PMID:11266458)
(PMID:20453062)		 MGI
ComplexPortal
GO_Central		 PMID:11266458 PMID:20453062 PMID:22496425 PMID:23704209 PMID:24035364 GO_REF:0000114 GO_REF:0000119 NCBI chr10:44,144,325...44,240,295
Ensembl chr10:44,144,354...44,240,287 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within
involved_in		 IMP
ISO		 (PMID:24035364)
(PMID:22496425), (PMID:23704209)		 MGI
GO_Central		 PMID:22496425 PMID:23704209 PMID:24035364 GO_REF:0000119 NCBI chr 6:114,620,075...114,837,565
Ensembl chr 6:114,620,058...114,837,575 		JBrowse link
G Becn1 beclin 1, autophagy related acts_upstream_of_or_within
involved_in		 IMP
IGI		 (PMID:14657337)
(PMID:23332761)
(PMID:17468177)		 MGI
UniProt		 PMID:14657337 PMID:17468177 PMID:23332761 NCBI chr11:101,179,084...101,193,112
Ensembl chr11:101,176,778...101,193,112 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin acts_upstream_of_or_within IMP (PMID:16714284) MGI PMID:16714284 NCBI chr 7:126,170,571...126,184,991
Ensembl chr 7:126,170,379...126,184,989 		JBrowse link
G Ei24 etoposide induced 2.4 mRNA involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:36,690,449...36,708,630
Ensembl chr 9:36,690,455...36,708,689 		JBrowse link
G Hdac10 histone deacetylase 10 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr15:89,007,506...89,012,903
Ensembl chr15:89,007,510...89,012,903 		JBrowse link
G Hmox1 heme oxygenase 1 acts_upstream_of IMP (PMID:20705711) MGI PMID:20705711 NCBI chr 8:75,820,246...75,827,221
Ensembl chr 8:75,820,249...75,827,217 		JBrowse link
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:27,970,206...28,039,516
Ensembl chr17:27,970,209...28,039,622 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO GO_Central GO_REF:0000119 NCBI chr 2:155,118,284...155,119,993
Ensembl chr 2:155,118,217...155,119,993 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO (PMID:28223137) UniProt PMID:28223137 NCBI chr 8:122,317,177...122,325,499
Ensembl chr 8:122,317,100...122,325,499 		JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of IMP (PMID:16714284) MGI PMID:16714284 NCBI chr 4:148,533,039...148,642,142
Ensembl chr 4:148,533,068...148,642,140 		JBrowse link
G Myo5a myosin VA involved_in ISO RGD
GO_Central		 PMID:29217155 GO_REF:0000096 RGD:42721980 NCBI chr 9:74,975,183...75,130,970
Ensembl chr 9:74,978,297...75,130,970 		JBrowse link
G Nbr1 NBR1, autophagy cargo receptor involved_in IBA
ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr11:101,442,933...101,472,777
Ensembl chr11:101,442,975...101,472,777 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of IMP
IGI		 (PMID:17468177) MGI PMID:17468177 NCBI chr18:12,322,751...12,369,851
Ensembl chr18:12,322,749...12,369,457 		JBrowse link
G Pdcd6ip programmed cell death 6 interacting protein involved_in IMP (PMID:25686249) UniProt PMID:25686249 NCBI chr 9:113,480,812...113,537,457
Ensembl chr 9:113,480,812...113,537,327 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within IGI (PMID:24098492) MGI PMID:24098492 NCBI chr 7:115,936,500...116,042,693
Ensembl chr 7:115,936,500...116,042,684 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta acts_upstream_of_or_within IGI (PMID:24098492) MGI PMID:24098492 NCBI chr 1:132,973,410...133,036,429
Ensembl chr 1:132,973,405...133,036,425 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in IMP (PMID:23332761), (PMID:25578879) ParkinsonsUK-UCL PMID:23332761 PMID:25578879 NCBI chr18:30,390,441...30,481,179
Ensembl chr18:30,405,800...30,481,179 		JBrowse link
G Pim2 proviral integration site 2 acts_upstream_of IMP (PMID:17476689) MGI PMID:17476689 NCBI chr  X:7,744,545...7,749,671
Ensembl chr  X:7,744,501...7,749,671 		JBrowse link
G Plaa phospholipase A2, activating protein involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:94,453,371...94,491,410
Ensembl chr 4:94,455,751...94,491,481 		JBrowse link
G Rab2a RAB2A, member RAS oncogene family involved_in IMP
ISO		 (PMID:28063257) UniProt
GO_Central		 PMID:28063257 GO_REF:0000119 NCBI chr 4:8,535,661...8,607,708
Ensembl chr 4:8,535,644...8,607,778 		JBrowse link
G Rab2b RAB2B, member RAS oncogene family involved_in IMP (PMID:28063257) UniProt PMID:28063257 NCBI chr14:52,499,216...52,516,852
Ensembl chr14:52,499,216...52,517,002 		JBrowse link
G Rab3gap2 RAB3 GTPase activating protein subunit 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:184,936,287...185,018,953
Ensembl chr 1:184,936,314...185,018,956 		JBrowse link
G Snf8 SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) involved_in ISS UniProt GO_REF:0000024 NCBI chr11:95,925,711...95,938,256
Ensembl chr11:95,925,711...95,938,256 		JBrowse link
G Sqstm1 sequestosome 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr11:50,090,979...50,105,303
Ensembl chr11:50,090,193...50,101,654 		JBrowse link
G Tbc1d5 TBC1 domain family, member 5 involved_in ISO GO_Central GO_REF:0000119 NCBI chr17:51,040,155...51,488,228
Ensembl chr17:51,040,152...51,486,380 		JBrowse link
G Tcirg1 T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 acts_upstream_of_or_within IMP (PMID:23704209) MGI PMID:23704209 NCBI chr19:3,946,050...3,957,717
Ensembl chr19:3,946,050...3,957,133 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISO GO_Central
ComplexPortal		 GO_REF:0000114 GO_REF:0000119 NCBI chr 5:144,131,260...144,160,433
Ensembl chr 5:144,131,260...144,160,433 		JBrowse link
G Tmem74 transmembrane protein 74 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr15:43,726,741...43,733,462
Ensembl chr15:43,728,042...43,733,432 		JBrowse link
G Trp53inp2 transformation related protein 53 inducible nuclear protein 2 acts_upstream_of_or_within IMP (PMID:24713655) MGI PMID:24713655 NCBI chr 2:155,223,742...155,231,767
Ensembl chr 2:155,222,979...155,231,770 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:20529957) GO_Central PMID:20529957 NCBI chr13:58,323,970...58,363,467
Ensembl chr13:58,323,970...58,363,467 		JBrowse link
G Ubxn6 UBX domain protein 6 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr17:56,374,045...56,386,333
Ensembl chr17:56,374,045...56,382,028 		JBrowse link
G Ulk1 unc-51 like kinase 1 acts_upstream_of_or_within
involved_in		 IMP
IGI
ISO		 (PMID:21258367)
(PMID:21855797)		 MGI
ParkinsonsUK-UCL
GO_Central		 PMID:21258367 PMID:21855797 GO_REF:0000119 NCBI chr 5:110,932,355...110,957,991
Ensembl chr 5:110,932,354...110,957,963 		JBrowse link
G Vcp valosin containing protein involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:42,979,964...43,000,507
Ensembl chr 4:42,979,963...43,000,507 		JBrowse link
G Vps41 VPS41 HOPS complex subunit involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:18,901,462...19,050,981
Ensembl chr13:18,901,456...19,050,981 		JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:55,304,489...55,615,893
Ensembl chr19:55,304,727...55,615,741 		JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:79,202,791...79,219,428
Ensembl chr12:79,202,791...79,219,441 		JBrowse link
G Yod1 YOD1 deubiquitinase involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 1:130,645,064...130,652,093
Ensembl chr 1:130,645,064...130,652,095 		JBrowse link
G Zfyve1 zinc finger, FYVE domain containing 1 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr12:83,593,330...83,679,289
Ensembl chr12:83,593,332...83,643,996 		JBrowse link
aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg4a autophagy related 4A, cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:139,854,594...139,947,190
Ensembl chr  X:139,857,656...139,947,266 		JBrowse link
G Atg4a-ps autophagy related 4A, pseudogene involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:103,551,269...103,553,384
Ensembl chr 3:103,551,270...103,553,384 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:93,682,627...93,717,328
Ensembl chr 1:93,679,222...93,718,332 		JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:99,077,181...99,185,495
Ensembl chr 4:99,082,171...99,148,024 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:21,176,496...21,186,133
Ensembl chr 9:21,176,589...21,189,068 		JBrowse link
G Atg5 autophagy related 5 involved_in ISO
IBA
IMP		 (PMID:22982048) GO_Central
ParkinsonsUK-UCL		 PMID:22982048 GO_REF:0000033 GO_REF:0000119 NCBI chr10:44,144,325...44,240,295
Ensembl chr10:44,144,354...44,240,287 		JBrowse link
G Sqstm1 sequestosome 1 involved_in IBA
IDA
ISO		 (PMID:25723488), (PMID:33397898) GO_Central
UniProt		 PMID:25723488 PMID:33397898 GO_REF:0000033 GO_REF:0000119 NCBI chr11:50,090,979...50,105,303
Ensembl chr11:50,090,193...50,101,654 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr13:58,323,970...58,363,467
Ensembl chr13:58,323,970...58,363,467 		JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 involved_in IBA
ISS
ISO		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 5:101,980,819...102,220,081
Ensembl chr 5:101,980,822...102,217,787 		JBrowse link
G Wdr81 WD repeat domain 81 involved_in IBA
ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr11:75,331,769...75,345,544
Ensembl chr11:75,331,770...75,345,543 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 9930111J21Rik1 RIKEN cDNA 9930111J21 gene 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:48,836,977...48,870,208
Ensembl chr11:48,836,977...48,870,225 		JBrowse link
G Ambra1 autophagy/beclin 1 regulator 1 involved_in IBA
ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 2:91,560,464...91,749,194
Ensembl chr 2:91,560,479...91,749,194 		JBrowse link
G Ap4m1 adaptor-related protein complex AP-4, mu 1 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 5:138,170,283...138,178,691
Ensembl chr 5:138,170,264...138,178,691 		JBrowse link
G Ap5z1 adaptor-related protein complex 5, zeta 1 subunit acts_upstream_of_or_within IMP (PMID:30930081) MGI PMID:30930081 NCBI chr 5:142,448,960...142,464,471
Ensembl chr 5:142,449,699...142,464,465 		JBrowse link
G Atg10 autophagy related 10 involved_in IBA
ISO		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr13:91,083,467...91,372,189
Ensembl chr13:91,083,475...91,372,087 		JBrowse link
G Atg101 autophagy related 101 involved_in ISO
IBA
IDA		 (PMID:19225151) GO_Central
ComplexPortal		 PMID:19225151 GO_REF:0000033 GO_REF:0000119 NCBI chr15:101,182,182...101,188,855
Ensembl chr15:101,182,153...101,188,826 		JBrowse link
G Atg12 autophagy related 12 involved_in IMP
IBA		 (PMID:11266458) ComplexPortal
GO_Central		 PMID:11266458 GO_REF:0000033 NCBI chr18:46,865,484...46,874,683
Ensembl chr18:46,863,211...46,874,647 		JBrowse link
G Atg13 autophagy related 13 acts_upstream_of_or_within
involved_in		 ISO
IDA
IMP
ISS		 (PMID:19225151)
(PMID:19258318)		 MGI
ComplexPortal
UniProt
GO_Central		 PMID:19225151 PMID:19258318 GO_REF:0000008 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:91,504,957...91,540,947
Ensembl chr 2:91,504,963...91,540,921 		JBrowse link
G Atg14 autophagy related 14 involved_in IBA
ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr14:47,778,350...47,805,891
Ensembl chr14:47,778,350...47,808,106 		JBrowse link
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within
involved_in		 TAS
IBA
ISO
IMP		 (PMID:12665549)
(PMID:11266458)		 MGI
GO_Central
ComplexPortal		 PMID:11266458 PMID:12665549 GO_REF:0000033 GO_REF:0000119 NCBI chr 1:87,683,730...87,720,150
Ensembl chr 1:87,683,592...87,720,150 		JBrowse link
G Atg16l2 autophagy related 16 like 2 NOT|involved_in IMP (PMID:22082872)
(PMID:11266458)		 UniProt
ComplexPortal		 PMID:11266458 PMID:22082872 NCBI chr 7:100,935,521...100,951,474
Ensembl chr 7:100,912,241...100,951,458 		JBrowse link
G Atg2a autophagy related 2A involved_in ISS
IBA
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr19:6,291,508...6,312,332
Ensembl chr19:6,291,698...6,312,365 		JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:105,579,798...105,651,554
Ensembl chr12:105,582,395...105,651,470 		JBrowse link
G Atg3 autophagy related 3 acts_upstream_of_or_within
involved_in		 IMP
IBA
IDA
ISO		 (PMID:21220506)
(PMID:20723759)
(PMID:24747438)		 MGI
GO_Central
UniProt		 PMID:20723759 PMID:21220506 PMID:24747438 GO_REF:0000033 GO_REF:0000119 NCBI chr16:44,979,192...45,008,901
Ensembl chr16:44,979,148...45,008,901 		JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in ISO
IBA		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr  X:139,854,594...139,947,190
Ensembl chr  X:139,857,656...139,947,266 		JBrowse link
G Atg4a-ps autophagy related 4A, pseudogene involved_in ISO
IBA		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr 3:103,551,269...103,553,384
Ensembl chr 3:103,551,270...103,553,384 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IBA
IMP		 (PMID:25578879) GO_Central
ParkinsonsUK-UCL		 PMID:25578879 GO_REF:0000033 GO_REF:0000119 NCBI chr 1:93,682,627...93,717,328
Ensembl chr 1:93,679,222...93,718,332 		JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in ISO
IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:99,077,181...99,185,495
Ensembl chr 4:99,082,171...99,148,024 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO
IBA		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr 9:21,176,496...21,186,133
Ensembl chr 9:21,176,589...21,189,068 		JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within		 ISO
IBA
IMP		 (PMID:11266458)
(PMID:23704209)		 RGD
GO_Central
UniProt
MGI		 PMID:11266458 PMID:16420522 PMID:23704209 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 RGD:1643189 NCBI chr10:44,144,325...44,240,295
Ensembl chr10:44,144,354...44,240,287 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within
involved_in		 IMP
IBA
ISO		 (PMID:23704209)
(PMID:20080761)		 MGI
GO_Central
ParkinsonsUK-UCL		 PMID:20080761 PMID:23704209 GO_REF:0000033 GO_REF:0000119 NCBI chr 6:114,620,075...114,837,565
Ensembl chr 6:114,620,058...114,837,575 		JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in		 IMP
ISO		 (PMID:22456507)
(PMID:23402761)
(PMID:15755735)		 MGI
GO_Central		 PMID:15755735 PMID:22456507 PMID:23402761 GO_REF:0000008 GO_REF:0000119 NCBI chr 1:75,157,509...75,168,654
Ensembl chr 1:75,157,504...75,168,840 		JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within
involved_in		 ISO
ISS		 (PMID:15755735) MGI
UniProt		 PMID:15755735 GO_REF:0000024 NCBI chr 5:24,589,179...24,597,141
Ensembl chr 5:24,589,179...24,597,141 		JBrowse link
G Atp2a2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 involved_in IBA
ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 5:122,591,576...122,640,288
Ensembl chr 5:122,591,576...122,640,288 		JBrowse link
G Becn1 beclin 1, autophagy related involved_in ISO
IBA
IMP		 (PMID:23332761) RGD
GO_Central
UniProt		 PMID:16420522 PMID:23332761 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 RGD:1643189 NCBI chr11:101,179,084...101,193,112
Ensembl chr11:101,176,778...101,193,112 		JBrowse link
G Becn2 beclin 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:175,747,895...175,749,791
Ensembl chr 1:175,747,895...175,749,791 		JBrowse link
G Ctsd cathepsin D acts_upstream_of_or_within IMP (PMID:15452145) MGI PMID:15452145 NCBI chr 7:141,929,647...141,941,564
Ensembl chr 7:141,929,648...141,941,775 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IBA
ISO		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr 3:108,362,995...108,444,064
Ensembl chr 3:108,363,010...108,443,852 		JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in IBA
IEA
ISO		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr11:73,066,329...73,067,868
Ensembl chr11:73,066,345...73,067,863 		JBrowse link
G Epm2a epilepsy, progressive myoclonic epilepsy, type 2 gene alpha acts_upstream_of_or_within IMP (PMID:24430976) MGI PMID:24430976 NCBI chr10:11,218,435...11,335,408
Ensembl chr10:11,219,148...11,335,388 		JBrowse link
G F830016B08Rik RIKEN cDNA F830016B08 gene involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:60,421,811...60,438,162
Ensembl chr18:60,426,452...60,436,088 		JBrowse link
G Gabarap gamma-aminobutyric acid receptor associated protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:69,882,196...69,885,775
Ensembl chr11:69,881,969...69,885,777 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:129,510,155...129,519,294
Ensembl chr 6:129,510,123...129,519,309 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:112,667,335...112,679,547
Ensembl chr 8:112,667,335...112,680,244 		JBrowse link
G Gm12185 predicted gene 12185 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:48,795,483...48,818,009
Ensembl chr11:48,795,483...48,883,053 		JBrowse link
G Gm12250 predicted gene 12250 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:58,074,669...58,081,024
Ensembl chr11:58,078,565...58,079,838
Ensembl chr11:58,078,565...58,079,838 		JBrowse link
G Gm4841 predicted gene 4841 involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:60,401,373...60,406,339
Ensembl chr18:60,401,377...60,406,344 		JBrowse link
G Gm5431 predicted gene 5431 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:48,778,249...48,792,979
Ensembl chr11:48,778,249...48,793,041 		JBrowse link
G Ifi47 interferon gamma inducible protein 47 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:48,967,414...48,987,814
Ensembl chr11:48,967,414...48,987,801 		JBrowse link
G Igtp interferon gamma induced GTPase involved_in ISO
IBA		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr11:58,090,382...58,098,418
Ensembl chr11:58,090,382...58,098,417 		JBrowse link
G Iigp1 interferon inducible GTPase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:60,506,688...60,525,706
Ensembl chr18:60,509,099...60,525,706 		JBrowse link
G Iigp1c interferon inducible GTPase 1C involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:60,345,064...60,381,512
Ensembl chr18:60,345,152...60,380,892 		JBrowse link
G Irgm1 immunity-related GTPase family M member 1 involved_in IDA
IBA
ISO		 (PMID:16888103) UniProt
GO_Central		 PMID:16888103 GO_REF:0000033 GO_REF:0000119 NCBI chr11:48,756,072...48,762,247
Ensembl chr11:48,752,795...48,762,510 		JBrowse link
G Irgm2 immunity-related GTPase family M member 2 involved_in ISO
IBA		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr11:58,105,803...58,113,609
Ensembl chr11:58,090,444...58,113,608 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISS
IBA
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 NCBI chr 2:155,118,284...155,119,993
Ensembl chr 2:155,118,217...155,119,993 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:122,317,177...122,325,499
Ensembl chr 8:122,317,100...122,325,499 		JBrowse link
G Mtm1 X-linked myotubular myopathy gene 1 acts_upstream_of IMP (PMID:23695157) MGI PMID:23695157 NCBI chr  X:70,254,373...70,359,019
Ensembl chr  X:70,254,373...70,359,297 		JBrowse link
G Nsfl1c NSFL1 (p97) cofactor (p47) involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:151,336,102...151,353,230
Ensembl chr 2:151,336,102...151,353,334 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO MGI GO_REF:0000008 NCBI chr12:112,977,998...113,038,021
Ensembl chr12:112,978,128...113,038,021 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in
acts_upstream_of_or_within		 ISO
IBA
IMP		 (PMID:24098492) RGD
GO_Central
MGI		 PMID:12453151 PMID:24098492 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 RGD:2303129 NCBI chr18:30,390,441...30,481,179
Ensembl chr18:30,405,800...30,481,179 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within IMP (PMID:15452145) MGI PMID:15452145 NCBI chr12:83,734,926...83,781,869
Ensembl chr12:83,734,926...83,781,973 		JBrowse link
G Rab19 RAB19, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:39,357,645...39,367,600
Ensembl chr 6:39,358,109...39,367,314 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISS
IBA
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr11:20,151,412...20,176,856
Ensembl chr11:20,151,432...20,176,856 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:5,149,235...5,157,024
Ensembl chr19:5,149,233...5,157,100 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in IBA
ISS
ISO		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 1:33,758,991...33,781,642
Ensembl chr 1:33,758,968...33,781,645 		JBrowse link
G Rab33a RAB33A, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:47,602,540...47,619,112
Ensembl chr  X:47,608,162...47,619,109 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in IBA
IMP		 (PMID:18448665) GO_Central PMID:18448665 GO_REF:0000033 NCBI chr 3:51,391,387...51,403,649
Ensembl chr 3:51,391,341...51,403,653 		JBrowse link
G Rab43 RAB43, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:87,765,835...87,789,146
Ensembl chr 6:87,765,835...87,789,146 		JBrowse link
G Rab7 RAB7, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:87,976,088...88,022,252
Ensembl chr 6:87,976,088...88,022,252 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in ISS
IBA
ISO
IMP
IDA		 (PMID:19258318)
(PMID:19225151)		 UniProt
GO_Central
ComplexPortal		 PMID:19225151 PMID:19258318 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 1:6,284,858...6,346,599
Ensembl chr 1:6,276,421...6,346,872 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in IBA
ISS
ISO		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 1:74,163,768...74,187,389
Ensembl chr 1:74,164,700...74,187,382 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
IBA
ISO
IMP		 (PMID:30568238) UniProt
GO_Central		 PMID:30568238 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr18:35,866,731...35,873,607
Ensembl chr18:35,866,732...35,873,607 		JBrowse link
G Stx12 syntaxin 12 involved_in IBA
IEA
ISO		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:132,581,375...132,611,769
Ensembl chr 4:132,580,812...132,611,820 		JBrowse link
G Synpo2 synaptopodin 2 involved_in ISO GO_Central GO_REF:0000096 NCBI chr 3:122,870,168...123,029,817
Ensembl chr 3:122,870,168...123,029,798 		JBrowse link
G Tcirg1 T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 acts_upstream_of_or_within IMP (PMID:23908015) MGI PMID:23908015 NCBI chr19:3,946,050...3,957,717
Ensembl chr19:3,946,050...3,957,133 		JBrowse link
G Tgtp1 T cell specific GTPase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:48,876,156...48,883,073
Ensembl chr11:48,876,154...48,884,999 		JBrowse link
G Tgtp2 T cell specific GTPase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:48,948,023...48,955,039
Ensembl chr11:48,948,021...48,955,033 		JBrowse link
G Tmem41b transmembrane protein 41B involved_in IBA
ISS
ISO		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 7:109,570,422...109,586,011
Ensembl chr 7:109,571,394...109,586,136 		JBrowse link
G Traf6 TNF receptor-associated factor 6 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:101,508,765...101,532,013
Ensembl chr 2:101,508,774...101,532,014 		JBrowse link
G Trim32 tripartite motif-containing 32 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:65,523,223...65,534,477
Ensembl chr 4:65,523,223...65,534,475 		JBrowse link
G Trp53inp1 transformation related protein 53 inducible nuclear protein 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:11,156,441...11,174,379
Ensembl chr 4:11,156,431...11,174,379 		JBrowse link
G Trp53inp2 transformation related protein 53 inducible nuclear protein 2 involved_in IBA
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:155,223,742...155,231,767
Ensembl chr 2:155,222,979...155,231,770 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr13:58,323,970...58,363,467
Ensembl chr13:58,323,970...58,363,467 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:152,281,228...152,284,558
Ensembl chr  X:152,281,223...152,284,566 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:4,926,814...4,957,749
Ensembl chr12:4,929,032...4,957,705 		JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:6,191,105...6,219,788
Ensembl chr 4:6,191,098...6,221,688 		JBrowse link
G Ulk1 unc-51 like kinase 1 involved_in ISO
IBA
IDA
IMP
ISS		 (PMID:19225151)
(PMID:19258318)		 GO_Central
ComplexPortal
UniProt		 PMID:19225151 PMID:19258318 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 5:110,932,355...110,957,991
Ensembl chr 5:110,932,354...110,957,963 		JBrowse link
G Ulk2 unc-51 like kinase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:61,666,424...61,750,754
Ensembl chr11:61,666,475...61,745,899 		JBrowse link
G Ulk3 unc-51-like kinase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:57,496,423...57,503,516
Ensembl chr 9:57,496,735...57,503,516 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISS
IBA
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr11:86,474,684...86,574,662
Ensembl chr11:86,474,691...86,574,662 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr  X:7,588,212...7,594,439
Ensembl chr  X:7,580,572...7,594,445 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:121,218,029...121,246,393
Ensembl chr11:121,218,050...121,245,271 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:109,464,347...109,502,215
Ensembl chr11:109,464,157...109,502,793 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 5:142,615,269...142,655,427
Ensembl chr 5:142,613,453...142,656,343 		JBrowse link
autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg2b AFG2 AAA ATPase homolog B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:122,461,112...122,474,933
Ensembl chr 2:122,461,120...122,474,750 		JBrowse link
G Atg12 autophagy related 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:46,865,484...46,874,683
Ensembl chr18:46,863,211...46,874,647 		JBrowse link
G Atg14 autophagy related 14 involved_in ISO GO_Central
ComplexPortal		 GO_REF:0000114 GO_REF:0000119 NCBI chr14:47,778,350...47,805,891
Ensembl chr14:47,778,350...47,808,106 		JBrowse link
G Becn1 beclin 1, autophagy related involved_in ISO ComplexPortal
GO_Central		 GO_REF:0000114 GO_REF:0000119 NCBI chr11:101,179,084...101,193,112
Ensembl chr11:101,176,778...101,193,112 		JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in ISO GO_Central
ComplexPortal		 GO_REF:0000114 GO_REF:0000119 NCBI chr 8:123,931,000...123,939,527
Ensembl chr 8:123,931,003...123,939,502 		JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO ComplexPortal
GO_Central		 GO_REF:0000114 GO_REF:0000119 NCBI chr18:67,338,430...67,340,958
Ensembl chr18:67,338,437...67,340,960 		JBrowse link
G Chmp1b2 charged multivesicular body protein 1B2 involved_in ISO ComplexPortal GO_REF:0000114 NCBI chr  X:106,826,357...106,859,940
Ensembl chr  X:106,826,357...106,859,940 		JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO GO_Central
ComplexPortal		 GO_REF:0000114 GO_REF:0000119 NCBI chr 7:12,765,933...12,768,704
Ensembl chr 7:12,765,937...12,768,734 		JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO GO_Central
ComplexPortal		 GO_REF:0000114 GO_REF:0000119 NCBI chr16:65,336,014...65,359,648
Ensembl chr16:65,336,014...65,359,612 		JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in ISO ComplexPortal GO_REF:0000114 NCBI chr 6:71,520,820...71,559,593
Ensembl chr 6:71,520,781...71,559,593 		JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO ComplexPortal
GO_Central		 GO_REF:0000114 GO_REF:0000119 NCBI chr 2:154,498,949...154,536,703
Ensembl chr 2:154,493,625...154,536,705 		JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in ISO GO_Central
ComplexPortal		 GO_REF:0000114 GO_REF:0000119 NCBI chr 3:10,432,033...10,456,065
Ensembl chr 3:10,431,967...10,493,916 		JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO GO_Central
ComplexPortal		 GO_REF:0000114 GO_REF:0000119 NCBI chr 4:40,948,553...40,965,302
Ensembl chr 4:40,948,407...40,965,303 		JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in ISO GO_Central
ComplexPortal		 GO_REF:0000114 GO_REF:0000119 NCBI chr11:119,803,874...119,810,378
Ensembl chr11:119,804,267...119,810,374 		JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO ComplexPortal
GO_Central		 GO_REF:0000114 GO_REF:0000119 NCBI chr14:69,954,428...69,970,019
Ensembl chr14:69,954,449...69,969,990 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin acts_upstream_of_or_within IMP (PMID:16714284) MGI PMID:16714284 NCBI chr 7:126,170,571...126,184,991
Ensembl chr 7:126,170,379...126,184,989 		JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within IMP (PMID:27715390) MGI PMID:27715390 NCBI chr 9:110,133,321...110,151,170
Ensembl chr 9:110,134,241...110,151,170 		JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:23479740) MGI
GO_Central		 PMID:23479740 GO_REF:0000033 NCBI chr18:77,981,618...78,080,539
Ensembl chr18:77,981,680...78,078,228 		JBrowse link
G Gabarap gamma-aminobutyric acid receptor associated protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:69,882,196...69,885,775
Ensembl chr11:69,881,969...69,885,777 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:129,510,155...129,519,294
Ensembl chr 6:129,510,123...129,519,309 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:112,667,335...112,679,547
Ensembl chr 8:112,667,335...112,680,244 		JBrowse link
G Irgm1 immunity-related GTPase family M member 1 involved_in IDA (PMID:21757726) UniProt PMID:21757726 NCBI chr11:48,756,072...48,762,247
Ensembl chr11:48,752,795...48,762,510 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 involved_in IBA
IMP		 (PMID:27628032) GO_Central
UniProt		 PMID:27628032 GO_REF:0000033 NCBI chr  X:37,488,524...37,545,337
Ensembl chr  X:37,490,234...37,545,331 		JBrowse link
G Lix1 limb and CNS expressed 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:17,622,948...17,679,649
Ensembl chr17:17,622,934...17,679,649 		JBrowse link
G Lix1l Lix1-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:96,508,449...96,532,668
Ensembl chr 3:96,508,465...96,533,487 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in IEA
IBA
ISO		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:155,118,284...155,119,993
Ensembl chr 2:155,118,217...155,119,993 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:122,317,177...122,325,499
Ensembl chr 8:122,317,100...122,325,499 		JBrowse link
G Mcoln1 mucolipin 1 acts_upstream_of_or_within IMP (PMID:20600908) MGI PMID:20600908 NCBI chr 8:3,550,458...3,565,232
Ensembl chr 8:3,550,457...3,565,232 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:29514215) MGI
GO_Central		 PMID:29514215 GO_REF:0000033 NCBI chr 3:40,772,500...40,801,322
Ensembl chr 3:40,772,538...40,801,321 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in ISO ComplexPortal
GO_Central		 GO_REF:0000114 GO_REF:0000119 NCBI chr18:30,390,441...30,481,179
Ensembl chr18:30,405,800...30,481,179 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 involved_in ISO ComplexPortal
GO_Central		 GO_REF:0000114 GO_REF:0000119 NCBI chr 9:105,520,156...105,564,854
Ensembl chr 9:105,520,177...105,564,856 		JBrowse link
G Rubcnl RUN and cysteine rich domain containing beclin 1 interacting protein like involved_in ISO
IMP
IBA		 (PMID:30704899) GO_Central
UniProt		 PMID:30704899 GO_REF:0000033 GO_REF:0000119 NCBI chr14:75,253,467...75,289,977
Ensembl chr14:75,253,467...75,289,972 		JBrowse link
G Snap29 synaptosomal-associated protein 29 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr16:17,223,864...17,248,690
Ensembl chr16:17,223,850...17,248,691 		JBrowse link
G Snapin SNAP-associated protein acts_upstream_of_or_within IMP (PMID:22797916)
(PMID:20920792)		 MGI PMID:20920792 PMID:22797916 NCBI chr 3:90,395,333...90,398,320
Ensembl chr 3:90,395,333...90,398,340 		JBrowse link
G Snx14 sorting nexin 14 involved_in ISS
IBA
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 9:88,258,805...88,320,982
Ensembl chr 9:88,258,800...88,321,011 		JBrowse link
G Stx17 syntaxin 17 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:48,124,912...48,186,507
Ensembl chr 4:48,124,915...48,186,507 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in IBA
ISS
ISO		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 5:144,131,260...144,160,433
Ensembl chr 5:144,131,260...144,160,433 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:58,323,970...58,363,467
Ensembl chr13:58,323,970...58,363,467 		JBrowse link
G Uvrag UV radiation resistance associated gene involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 7:98,535,949...98,790,373
Ensembl chr 7:98,534,228...98,790,348 		JBrowse link
G Vamp7 vesicle-associated membrane protein 7 NOT|involved_in ISO (PMID:23217709) UniProt PMID:23217709
G Vamp8 vesicle-associated membrane protein 8 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 6:72,362,204...72,367,650
Ensembl chr 6:72,362,206...72,367,686 		JBrowse link
G Vcp valosin containing protein involved_in IBA
ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 4:42,979,964...43,000,507
Ensembl chr 4:42,979,963...43,000,507 		JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT|involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chr12:87,285,647...87,313,426
Ensembl chr12:87,285,642...87,313,030 		JBrowse link
G Vps16 VSP16 CORVET/HOPS core subunit involved_in ISO GO_Central GO_REF:0000119 NCBI chr 2:130,265,744...130,286,189
Ensembl chr 2:130,266,259...130,286,189 		JBrowse link
G Vps33a VPS33A CORVET/HOPS core subunit involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 5:123,666,820...123,711,104
Ensembl chr 5:123,666,722...123,711,101 		JBrowse link
G Vps33b vacuolar protein sorting 33B NOT|involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chr 7:79,919,369...79,941,323
Ensembl chr 7:79,919,397...79,941,502 		JBrowse link
G Vps4a vacuolar protein sorting 4A involved_in NAS (PMID:9211789) ComplexPortal PMID:9211789 NCBI chr 8:107,757,901...107,772,392
Ensembl chr 8:107,757,854...107,772,387 		JBrowse link
G Vps4b vacuolar protein sorting 4B involved_in NAS (PMID:9211789) ComplexPortal PMID:9211789 NCBI chr 1:106,698,518...106,724,455
Ensembl chr 1:106,691,801...106,724,458 		JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B NOT|involved_in ISO (PMID:23217709) UniProt PMID:23217709 NCBI chr12:79,202,791...79,219,428
Ensembl chr12:79,202,791...79,219,441 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 NOT|involved_in ISO (PMID:20505359) UniProt PMID:20505359 NCBI chr 5:142,615,269...142,655,427
Ensembl chr 5:142,613,453...142,656,343 		JBrowse link
autophagosome membrane docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr14:47,778,350...47,805,891
Ensembl chr14:47,778,350...47,808,106 		JBrowse link
G Atp2a2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 5:122,591,576...122,640,288
Ensembl chr 5:122,591,576...122,640,288 		JBrowse link
G Calm1 calmodulin 1 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr12:100,165,694...100,176,083
Ensembl chr12:100,165,694...100,176,073 		JBrowse link
G Calm2 calmodulin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:87,740,829...87,754,363
Ensembl chr17:87,740,840...87,754,363 		JBrowse link
G Calm3 calmodulin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:16,649,304...16,657,957
Ensembl chr 7:16,649,304...16,658,039 		JBrowse link
G Snap29 synaptosomal-associated protein 29 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:17,223,864...17,248,690
Ensembl chr16:17,223,850...17,248,691 		JBrowse link
G Stx17 syntaxin 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:48,124,912...48,186,507
Ensembl chr 4:48,124,915...48,186,507 		JBrowse link
G Vamp8 vesicle-associated membrane protein 8 involved_in ISO (PMID:25686604) GO_Central PMID:25686604 NCBI chr 6:72,362,204...72,367,650
Ensembl chr 6:72,362,206...72,367,686 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:86,474,684...86,574,662
Ensembl chr11:86,474,691...86,574,662 		JBrowse link
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase type 13A2 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 4:140,711,812...140,734,641
Ensembl chr 4:140,714,184...140,734,641 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within IMP (PMID:23707074) ARUK-UCL PMID:23707074 NCBI chr 3:89,110,235...89,119,944
Ensembl chr 3:89,110,235...89,116,273 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within IGI (PMID:24098492) MGI PMID:24098492 NCBI chr 7:115,936,500...116,042,693
Ensembl chr 7:115,936,500...116,042,684 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta acts_upstream_of_or_within IGI (PMID:24098492) MGI PMID:24098492 NCBI chr 1:132,973,410...133,036,429
Ensembl chr 1:132,973,405...133,036,425 		JBrowse link
G Spg11 SPG11, spatacsin vesicle trafficking associated acts_upstream_of_or_within ISO (PMID:25365221) MGI PMID:25365221 NCBI chr 2:121,884,001...121,949,915
Ensembl chr 2:121,884,001...121,948,867 		JBrowse link
G Zfyve26 zinc finger, FYVE domain containing 26 acts_upstream_of_or_within ISO (PMID:25365221) MGI PMID:25365221 NCBI chr12:79,279,120...79,343,102
Ensembl chr12:79,279,120...79,343,078 		JBrowse link
autophagosome-endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rubcnl RUN and cysteine rich domain containing beclin 1 interacting protein like involved_in IBA
ISO		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr14:75,253,467...75,289,977
Ensembl chr14:75,253,467...75,289,972 		JBrowse link
autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ADP-ribosylation factor-like 8B involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 6:108,760,020...108,800,684
Ensembl chr 6:108,760,060...108,802,239 		JBrowse link
G Atp13a2 ATPase type 13A2 involved_in ISO
IBA
IMP		 (PMID:30538141) GO_Central
UniProt		 PMID:30538141 GO_REF:0000033 GO_REF:0000119 NCBI chr 4:140,711,812...140,734,641
Ensembl chr 4:140,714,184...140,734,641 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IMP (PMID:26450516) UniProt PMID:26450516 NCBI chr 7:126,170,571...126,184,991
Ensembl chr 7:126,170,379...126,184,989 		JBrowse link
G Diaph3 diaphanous related formin 3 acts_upstream_of_or_within IMP (PMID:33036023) MGI PMID:33036023 NCBI chr14:86,892,793...87,378,683
Ensembl chr14:86,892,803...87,378,671 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase, type II, alpha involved_in IMP (PMID:29727621) UniProt PMID:29727621 NCBI chr 2:18,847,066...19,003,101
Ensembl chr 2:18,847,066...19,002,937 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase, type II, beta involved_in IMP (PMID:29727621) UniProt PMID:29727621 NCBI chr11:97,605,983...97,635,530
Ensembl chr11:97,605,983...97,635,530 		JBrowse link
G Plekhm1 pleckstrin homology domain containing, family M (with RUN domain) member 1 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:103,255,101...103,303,531
Ensembl chr11:103,255,101...103,303,513 		JBrowse link
G Plekhm2 pleckstrin homology domain containing, family M (with RUN domain) member 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 4:141,353,043...141,391,457
Ensembl chr 4:141,353,045...141,392,210 		JBrowse link
G Rubcnl RUN and cysteine rich domain containing beclin 1 interacting protein like involved_in IBA
ISS
ISO		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr14:75,253,467...75,289,977
Ensembl chr14:75,253,467...75,289,972 		JBrowse link
G Tom1 target of myb1 trafficking protein involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 8:75,760,326...75,796,749
Ensembl chr 8:75,760,333...75,796,749 		JBrowse link
G Vps39 VPS39 HOPS complex subunit involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:120,146,942...120,183,618
Ensembl chr 2:120,146,942...120,183,618 		JBrowse link
G Znrf1 zinc and ring finger 1 acts_upstream_of ISO GO_Central GO_REF:0000119 NCBI chr 8:112,262,652...112,352,352
Ensembl chr 8:112,262,729...112,352,662 		JBrowse link
G Znrf2 zinc and ring finger 2 acts_upstream_of ISO GO_Central GO_REF:0000119 NCBI chr 6:54,793,901...54,867,209
Ensembl chr 6:54,793,901...54,870,485 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 5:144,813,305...144,902,657
Ensembl chr 5:144,813,305...144,902,657 		JBrowse link
glycophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:46,865,484...46,874,683
Ensembl chr18:46,863,211...46,874,647 		JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:6,291,508...6,312,332
Ensembl chr19:6,291,698...6,312,365 		JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:105,579,798...105,651,554
Ensembl chr12:105,582,395...105,651,470 		JBrowse link
G Atg3 autophagy related 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:44,979,192...45,008,901
Ensembl chr16:44,979,148...45,008,901 		JBrowse link
G Gaa glucosidase, alpha, acid involved_in IMP
ISO		 (PMID:12739885)
(PMID:24417)		 MGI PMID:24417 PMID:12739885 NCBI chr11:119,158,789...119,176,284
Ensembl chr11:119,158,713...119,176,280 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IMP (PMID:20810658) MGI PMID:20810658 NCBI chr 6:129,510,155...129,519,294
Ensembl chr 6:129,510,123...129,519,309 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:6,284,858...6,346,599
Ensembl chr 1:6,276,421...6,346,872 		JBrowse link
G Stbd1 starch binding domain 1 involved_in IMP
ISS		 (PMID:20810658) MGI
GO_Central		 PMID:20810658 GO_REF:0000024 NCBI chr 5:92,750,910...92,754,438
Ensembl chr 5:92,750,900...92,754,438 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:7,588,212...7,594,439
Ensembl chr  X:7,580,572...7,594,445 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:121,218,029...121,246,393
Ensembl chr11:121,218,050...121,245,271 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:109,464,347...109,502,215
Ensembl chr11:109,464,157...109,502,793 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:142,615,269...142,655,427
Ensembl chr 5:142,613,453...142,656,343 		JBrowse link
lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aup1 ancient ubiquitous protein 1 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 6:83,031,483...83,034,663
Ensembl chr 6:83,031,502...83,034,789 		JBrowse link
G Rab7 RAB7, member RAS oncogene family involved_in IMP (PMID:23708524) GO_Central PMID:23708524 NCBI chr 6:87,976,088...88,022,252
Ensembl chr 6:87,976,088...88,022,252 		JBrowse link
G Spart spartin involved_in IMP (PMID:37443287) UniProt PMID:37443287 NCBI chr 3:55,019,500...55,044,753
Ensembl chr 3:55,019,529...55,044,743 		JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 acts_upstream_of ISO MGI GO_REF:0000008 NCBI chr13:53,486,784...53,531,401
Ensembl chr13:53,486,784...53,531,433 		JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 acts_upstream_of ISO MGI GO_REF:0000008 NCBI chr12:87,351,832...87,435,129
Ensembl chr12:87,351,832...87,435,129 		JBrowse link
mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl interactor 2 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 1:60,444,927...60,521,104
Ensembl chr 1:60,448,778...60,520,317 		JBrowse link
G Ambra1 autophagy/beclin 1 regulator 1 involved_in IBA
IEA
ISO		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:91,560,464...91,749,194
Ensembl chr 2:91,560,479...91,749,194 		JBrowse link
G Arfip2 ARF interacting protein 2 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 7:105,283,408...105,289,623
Ensembl chr 7:105,283,410...105,289,623 		JBrowse link
G Arhgap26 Rho GTPase activating protein 26 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr18:38,734,531...39,509,338
Ensembl chr18:39,126,198...39,509,337
Ensembl chr18:39,126,198...39,509,337 		JBrowse link
G Atg10 autophagy related 10 involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:91,083,467...91,372,189
Ensembl chr13:91,083,475...91,372,087 		JBrowse link
G Atg13 autophagy related 13 involved_in IBA
IMP		 (PMID:21855797) GO_Central
ParkinsonsUK-UCL		 PMID:21855797 GO_REF:0000033 NCBI chr 2:91,504,957...91,540,947
Ensembl chr 2:91,504,963...91,540,921 		JBrowse link
G Atg14 autophagy related 14 involved_in IBA
ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr14:47,778,350...47,805,891
Ensembl chr14:47,778,350...47,808,106 		JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:139,854,594...139,947,190
Ensembl chr  X:139,857,656...139,947,266 		JBrowse link
G Atg4a-ps autophagy related 4A, pseudogene involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:103,551,269...103,553,384
Ensembl chr 3:103,551,270...103,553,384 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in IBA
ISS
ISO		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 1:93,682,627...93,717,328
Ensembl chr 1:93,679,222...93,718,332 		JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:99,077,181...99,185,495
Ensembl chr 4:99,082,171...99,148,024 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in IBA
ISS
ISO		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 9:21,176,496...21,186,133
Ensembl chr 9:21,176,589...21,189,068 		JBrowse link
G Atg5 autophagy related 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:44,144,325...44,240,295
Ensembl chr10:44,144,354...44,240,287 		JBrowse link
G Atg7 autophagy related 7 involved_in IMP
IBA
ISO		 (PMID:20080761) ParkinsonsUK-UCL
GO_Central		 PMID:20080761 GO_REF:0000033 GO_REF:0000119 NCBI chr 6:114,620,075...114,837,565
Ensembl chr 6:114,620,058...114,837,575 		JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:75,157,509...75,168,654
Ensembl chr 1:75,157,504...75,168,840 		JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:24,589,179...24,597,141
Ensembl chr 5:24,589,179...24,597,141 		JBrowse link
G Bcl2l13 BCL2 like 13 acts_upstream_of_or_within IMP (PMID:31266807) MGI PMID:31266807 NCBI chr 6:120,813,167...120,869,803
Ensembl chr 6:120,813,173...120,869,803 		JBrowse link
G Becn1 beclin 1, autophagy related involved_in ISO
IBA		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr11:101,179,084...101,193,112
Ensembl chr11:101,176,778...101,193,112 		JBrowse link
G Becn2 beclin 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:175,747,895...175,749,791
Ensembl chr 1:175,747,895...175,749,791 		JBrowse link
G Bnip3 BCL2/adenovirus E1B interacting protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:138,492,565...138,511,235
Ensembl chr 7:138,492,565...138,511,248 		JBrowse link
G Clec16a C-type lectin domain family 16, member A involved_in ISO (PMID:35604110) DisProt PMID:35604110 NCBI chr16:10,363,173...10,562,742
Ensembl chr16:10,363,203...10,562,742 		JBrowse link
G Ctsk cathepsin K involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 3:95,406,521...95,416,698
Ensembl chr 3:95,406,567...95,416,673 		JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2, subunit 1 alpha involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr12:78,908,846...78,933,784
Ensembl chr12:78,908,593...78,933,784 		JBrowse link
G Fundc1 FUN14 domain containing 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr  X:17,386,206...17,438,600
Ensembl chr  X:17,422,803...17,438,564 		JBrowse link
G Gabarap gamma-aminobutyric acid receptor associated protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:69,882,196...69,885,775
Ensembl chr11:69,881,969...69,885,777 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:129,510,155...129,519,294
Ensembl chr 6:129,510,123...129,519,309 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:112,667,335...112,679,547
Ensembl chr 8:112,667,335...112,680,244 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within IMP (PMID:23707074) MGI PMID:23707074 NCBI chr 3:89,110,235...89,119,944
Ensembl chr 3:89,110,235...89,116,273 		JBrowse link
G Lrba LPS-responsive beige-like anchor involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 3:86,130,763...86,690,001
Ensembl chr 3:86,131,987...86,689,999 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:155,118,284...155,119,993
Ensembl chr 2:155,118,217...155,119,993 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISS
IBA		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr 8:122,317,177...122,325,499
Ensembl chr 8:122,317,100...122,325,499 		JBrowse link
G Nipsnap1 nipsnap homolog 1 involved_in IDA
ISO		 (PMID:30982665) UniProt
GO_Central		 PMID:30982665 GO_REF:0000119 NCBI chr11:4,823,951...4,844,201
Ensembl chr11:4,823,951...4,844,200 		JBrowse link
G Nipsnap2 nipsnap homolog 2 involved_in IDA
ISO		 (PMID:30982665) UniProt
GO_Central		 PMID:30982665 GO_REF:0000119 NCBI chr 5:129,802,080...129,835,391
Ensembl chr 5:129,802,127...129,835,391 		JBrowse link
G Nipsnap3b nipsnap homolog 3B involved_in IEA UniProt GO_REF:0000117 NCBI chr 4:53,011,932...53,022,060
Ensembl chr 4:53,011,880...53,022,060 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) involved_in IMP (PMID:33406421) ARUK-UCL PMID:33406421 NCBI chr  X:100,683,617...100,727,957
Ensembl chr  X:100,683,666...100,727,957 		JBrowse link
G Phb2 prohibitin 2 involved_in IDA
ISO		 (PMID:28017329) UniProt
GO_Central		 PMID:28017329 GO_REF:0000119 NCBI chr 6:124,689,252...124,693,908
Ensembl chr 6:124,689,299...124,693,913 		JBrowse link
G Pink1 PTEN induced putative kinase 1 involved_in ISO
IEA		 GO_Central
Ensembl
RGD		 PMID:25154397 GO_REF:0000107 GO_REF:0000119 RGD:12904014 NCBI chr 4:138,040,718...138,053,631
Ensembl chr 4:138,040,720...138,053,618 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase acts_upstream_of_or_within
involved_in		 IGI
IBA
ISO		 (PMID:24949970) MGI
GO_Central		 PMID:24949970 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 NCBI chr17:11,059,227...12,282,257
Ensembl chr17:11,059,271...12,282,248 		JBrowse link
G Retreg1 reticulophagy regulator 1 acts_upstream_of_or_within IDA (PMID:31446166) MGI PMID:31446166 NCBI chr15:25,840,795...25,973,782
Ensembl chr15:25,843,266...25,973,773 		JBrowse link
G Rimoc1 RAB7A interacting MON1-CCZ1 complex subunit 1 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr15:4,011,517...4,025,228
Ensembl chr15:4,011,517...4,025,226 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:59,805,137...59,904,740
Ensembl chr 4:59,805,840...59,904,737 		JBrowse link
G Snx7 sorting nexin 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:117,575,146...117,662,585
Ensembl chr 3:117,575,296...117,662,585 		JBrowse link
G Spata33 spermatogenesis associated 33 involved_in IMP (PMID:33087875) UniProt PMID:33087875 NCBI chr 8:123,939,572...123,948,784
Ensembl chr 8:123,939,571...123,948,785 		JBrowse link
G Sqstm1 sequestosome 1 involved_in IBA
IEA
ISO		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr11:50,090,979...50,105,303
Ensembl chr11:50,090,193...50,101,654 		JBrowse link
G Tafazzin tafazzin, phospholipid-lysophospholipid transacylase involved_in IMP
ISO		 (PMID:25919711) UniProt
GO_Central		 PMID:25919711 GO_REF:0000119 NCBI chr  X:73,325,498...73,340,182
Ensembl chr  X:73,325,518...73,333,757 		JBrowse link
G Tigar Trp53 induced glycolysis regulatory phosphatase acts_upstream_of IMP (PMID:22044588) MGI PMID:22044588 NCBI chr 6:127,062,079...127,086,564
Ensembl chr 6:127,062,079...127,086,520 		JBrowse link
G Trp53 transformation related protein 53 acts_upstream_of IMP (PMID:22044588) MGI PMID:22044588 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
G Ulk1 unc-51 like kinase 1 involved_in IMP
IBA		 (PMID:21855797) ParkinsonsUK-UCL
GO_Central		 PMID:21855797 GO_REF:0000033 NCBI chr 5:110,932,355...110,957,991
Ensembl chr 5:110,932,354...110,957,963 		JBrowse link
G Ulk2 unc-51 like kinase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:61,666,424...61,750,754
Ensembl chr11:61,666,475...61,745,899 		JBrowse link
G Ulk3 unc-51-like kinase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:57,496,423...57,503,516
Ensembl chr 9:57,496,735...57,503,516 		JBrowse link
negative regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr  X:7,796,355...7,814,284
Ensembl chr  X:7,796,359...7,814,128 		JBrowse link
G Lypla1 lysophospholipase 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 1:4,878,046...4,916,958
Ensembl chr 1:4,878,011...4,918,633 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1, autophagy related acts_upstream_of_or_within IMP (PMID:27994061) MGI PMID:27994061 NCBI chr11:101,179,084...101,193,112
Ensembl chr11:101,176,778...101,193,112 		JBrowse link
G Ehmt2 euchromatic histone lysine N-methyltransferase 2 acts_upstream_of_or_within IMP (PMID:23918802) MGI PMID:23918802 NCBI chr17:35,117,427...35,133,049
Ensembl chr17:35,117,445...35,133,028 		JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in ISS GO_Central GO_REF:0000024 NCBI chr 9:36,732,694...36,790,220
Ensembl chr 9:36,733,160...36,790,220 		JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISS GO_Central GO_REF:0000024 NCBI chr17:78,676,641...78,725,581
Ensembl chr17:78,676,641...78,725,581 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr15:91,556,994...91,700,327
Ensembl chr15:91,557,378...91,700,323 		JBrowse link
G Mtm1 X-linked myotubular myopathy gene 1 involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:23695157) GO_Central
MGI		 PMID:23695157 GO_REF:0000033 NCBI chr  X:70,254,373...70,359,019
Ensembl chr  X:70,254,373...70,359,297 		JBrowse link
G Nupr1 nuclear protein transcription regulator 1 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 7:126,222,418...126,224,642
Ensembl chr 7:126,222,421...126,230,033 		JBrowse link
G Phf23 PHD finger protein 23 involved_in IBA
ISS		 GO_Central GO_REF:0000024 GO_REF:0000033 NCBI chr11:69,886,592...69,890,837
Ensembl chr11:69,886,603...69,890,835 		JBrowse link
G Pink1 PTEN induced putative kinase 1 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:138,040,718...138,053,631
Ensembl chr 4:138,040,720...138,053,618 		JBrowse link
G Scfd1 Sec1 family domain containing 1 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr12:51,424,296...51,496,887
Ensembl chr12:51,424,293...51,496,884 		JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 3:97,808,543...97,829,634
Ensembl chr 3:97,808,506...97,830,592 		JBrowse link
G Smcr8 Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:60,668,351...60,679,113
Ensembl chr11:60,668,350...60,679,113 		JBrowse link
G Tmem39a transmembrane protein 39a involved_in IBA
ISS
ISO		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr16:38,379,060...38,412,524
Ensembl chr16:38,379,060...38,412,524 		JBrowse link
negative regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain family 16, member A involved_in ISO GO_Central GO_REF:0000119 NCBI chr16:10,363,173...10,562,742
Ensembl chr16:10,363,203...10,562,742 		JBrowse link
G Phf23 PHD finger protein 23 involved_in IBA
ISS		 GO_Central GO_REF:0000024 GO_REF:0000033 NCBI chr11:69,886,592...69,890,837
Ensembl chr11:69,886,603...69,890,835 		JBrowse link
G Rubcn RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein involved_in IBA
IEA
ISO		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr16:32,642,072...32,698,121
Ensembl chr16:32,642,073...32,698,136 		JBrowse link
G Tmem39a transmembrane protein 39a involved_in IBA
ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr16:38,379,060...38,412,524
Ensembl chr16:38,379,060...38,412,524 		JBrowse link
G Ubqln4 ubiquilin 4 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 3:88,460,984...88,477,032
Ensembl chr 3:88,461,065...88,477,032 		JBrowse link
negative regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 acts_upstream_of_or_within IMP (PMID:20705711) MGI PMID:20705711 NCBI chr 8:75,820,246...75,827,221
Ensembl chr 8:75,820,249...75,827,217 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO GO_Central GO_REF:0000119 NCBI chr15:91,556,994...91,700,327
Ensembl chr15:91,557,378...91,700,323 		JBrowse link
G Lzts1 leucine zipper, putative tumor suppressor 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 8:69,585,311...69,636,901
Ensembl chr 8:69,585,321...69,636,877 		JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of_or_within
involved_in		 IMP
IBA
ISO		 (PMID:16714284), (PMID:23274896)
(PMID:25327288)		 MGI
GO_Central		 PMID:16714284 PMID:23274896 PMID:25327288 GO_REF:0000033 NCBI chr 4:148,533,039...148,642,142
Ensembl chr 4:148,533,068...148,642,140 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of_or_within IGI
IMP		 (PMID:17468177) MGI PMID:17468177 NCBI chr18:12,322,751...12,369,851
Ensembl chr18:12,322,749...12,369,457 		JBrowse link
G Nrbp2 nuclear receptor binding protein 2 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr15:75,957,364...75,963,539
Ensembl chr15:75,957,367...75,963,476 		JBrowse link
G Pink1 PTEN induced putative kinase 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 4:138,040,718...138,053,631
Ensembl chr 4:138,040,720...138,053,618 		JBrowse link
G Poldip2 polymerase (DNA-directed), delta interacting protein 2 acts_upstream_of_or_within IMP (PMID:24797518) MGI PMID:24797518 NCBI chr11:78,403,105...78,413,562
Ensembl chr11:78,403,019...78,413,562 		JBrowse link
G Qsox1 quiescin Q6 sulfhydryl oxidase 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 1:155,653,901...155,688,645
Ensembl chr 1:155,651,775...155,688,635 		JBrowse link
G Smcr8 Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:60,668,351...60,679,113
Ensembl chr11:60,668,350...60,679,113 		JBrowse link
G Tsc1 TSC complex subunit 1 involved_in ISS
ISO		 ParkinsonsUK-UCL
GO_Central		 GO_REF:0000024 GO_REF:0000096 NCBI chr 2:28,531,005...28,581,183
Ensembl chr 2:28,531,240...28,581,179 		JBrowse link
G Tsc2 TSC complex subunit 2 involved_in ISO RGD
GO_Central		 PMID:24599401 GO_REF:0000096 RGD:11568679 NCBI chr17:24,814,788...24,851,607
Ensembl chr17:24,814,790...24,851,604 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:118,150,477...118,181,086
Ensembl chr11:118,150,477...118,181,070 		JBrowse link
negative regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain family 16, member A acts_upstream_of_or_within IMP (PMID:24949970) MGI PMID:24949970 NCBI chr16:10,363,173...10,562,742
Ensembl chr16:10,363,203...10,562,742 		JBrowse link
G Fbxl4 F-box and leucine-rich repeat protein 4 involved_in ISO (PMID:38992176) UniProt PMID:38992176 NCBI chr 4:22,357,526...22,434,091
Ensembl chr 4:22,357,543...22,434,091 		JBrowse link
G Pink1 PTEN induced putative kinase 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:138,040,718...138,053,631
Ensembl chr 4:138,040,720...138,053,618 		JBrowse link
G Pptc7 PTC7 protein phosphatase homolog involved_in ISO (PMID:38992176) UniProt PMID:38992176 NCBI chr 5:122,422,461...122,462,344
Ensembl chr 5:122,422,428...122,462,344 		JBrowse link
G Rnf41 ring finger protein 41 acts_upstream_of_or_within IGI (PMID:24949970) MGI PMID:24949970 NCBI chr10:128,247,485...128,277,310
Ensembl chr10:128,247,526...128,277,310 		JBrowse link
G Tigar Trp53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within IMP (PMID:22044588) MGI PMID:22044588 NCBI chr 6:127,062,079...127,086,564
Ensembl chr 6:127,062,079...127,086,520 		JBrowse link
G Trp53 transformation related protein 53 acts_upstream_of_or_within IMP (PMID:22044588) MGI PMID:22044588 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
G Tspo translocator protein involved_in IMP (PMID:25470454) ParkinsonsUK-UCL PMID:25470454 NCBI chr15:83,447,774...83,458,404
Ensembl chr15:83,447,793...83,458,404 		JBrowse link
G Usp30 ubiquitin specific peptidase 30 involved_in ISO
IEA		 RGD
Ensembl
GO_Central		 PMID:24896179 GO_REF:0000096 GO_REF:0000107 RGD:13208875 NCBI chr 5:114,238,395...114,261,571
Ensembl chr 5:114,203,522...114,262,781 		JBrowse link
negative regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htra2 HtrA serine peptidase 2 involved_in IMP (PMID:24709290) ParkinsonsUK-UCL PMID:24709290 NCBI chr 6:83,028,247...83,031,552
Ensembl chr 6:83,028,247...83,032,254 		JBrowse link
G Vps13c vacuolar protein sorting 13C involved_in ISO
ISS		 GO_Central
ParkinsonsUK-UCL		 GO_REF:0000024 GO_REF:0000119 NCBI chr 9:67,747,594...67,905,026
Ensembl chr 9:67,747,678...67,902,920 		JBrowse link
nucleophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg3 autophagy related 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:44,979,192...45,008,901
Ensembl chr16:44,979,148...45,008,901 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:7,588,212...7,594,439
Ensembl chr  X:7,580,572...7,594,445 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:121,218,029...121,246,393
Ensembl chr11:121,218,050...121,245,271 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:109,464,347...109,502,215
Ensembl chr11:109,464,157...109,502,793 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:142,615,269...142,655,427
Ensembl chr 5:142,613,453...142,656,343 		JBrowse link
pexophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acbd5 acyl-Coenzyme A binding domain containing 5 involved_in IEA
ISO		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000119 NCBI chr 2:22,958,189...23,004,525
Ensembl chr 2:22,958,179...23,005,570 		JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:6,291,508...6,312,332
Ensembl chr19:6,291,698...6,312,365 		JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:105,579,798...105,651,554
Ensembl chr12:105,582,395...105,651,470 		JBrowse link
G Atm ataxia telangiectasia mutated involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 9:53,348,422...53,448,125
Ensembl chr 9:53,350,449...53,448,040 		JBrowse link
G Pex2 peroxisomal biogenesis factor 2 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 3:5,625,248...5,643,655
Ensembl chr 3:5,625,248...5,641,299 		JBrowse link
G Pex5 peroxisomal biogenesis factor 5 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 6:124,373,774...124,392,878
Ensembl chr 6:124,373,775...124,392,026 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:30,390,441...30,481,179
Ensembl chr18:30,405,800...30,481,179 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:105,520,156...105,564,854
Ensembl chr 9:105,520,177...105,564,856 		JBrowse link
G Pjvk pejvakin involved_in IMP (PMID:30936319) UniProt PMID:30936319 NCBI chr 2:76,480,617...76,488,898
Ensembl chr 2:76,478,820...76,488,900 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:6,284,858...6,346,599
Ensembl chr 1:6,276,421...6,346,872 		JBrowse link
G Sqstm1 sequestosome 1 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:50,090,979...50,105,303
Ensembl chr11:50,090,193...50,101,654 		JBrowse link
piecemeal microautophagy of the nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:46,865,484...46,874,683
Ensembl chr18:46,863,211...46,874,647 		JBrowse link
G Atg13 autophagy related 13 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:91,504,957...91,540,947
Ensembl chr 2:91,504,963...91,540,921 		JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:6,291,508...6,312,332
Ensembl chr19:6,291,698...6,312,365 		JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:105,579,798...105,651,554
Ensembl chr12:105,582,395...105,651,470 		JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:139,854,594...139,947,190
Ensembl chr  X:139,857,656...139,947,266 		JBrowse link
G Atg4a-ps autophagy related 4A, pseudogene involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:103,551,269...103,553,384
Ensembl chr 3:103,551,270...103,553,384 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:93,682,627...93,717,328
Ensembl chr 1:93,679,222...93,718,332 		JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:99,077,181...99,185,495
Ensembl chr 4:99,082,171...99,148,024 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:21,176,496...21,186,133
Ensembl chr 9:21,176,589...21,189,068 		JBrowse link
G Atg5 autophagy related 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:44,144,325...44,240,295
Ensembl chr10:44,144,354...44,240,287 		JBrowse link
G Atg7 autophagy related 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:114,620,075...114,837,565
Ensembl chr 6:114,620,058...114,837,575 		JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:75,157,509...75,168,654
Ensembl chr 1:75,157,504...75,168,840 		JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:24,589,179...24,597,141
Ensembl chr 5:24,589,179...24,597,141 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:6,284,858...6,346,599
Ensembl chr 1:6,276,421...6,346,872 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:59,805,137...59,904,740
Ensembl chr 4:59,805,840...59,904,737 		JBrowse link
G Snx7 sorting nexin 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:117,575,146...117,662,585
Ensembl chr 3:117,575,296...117,662,585 		JBrowse link
G Ulk1 unc-51 like kinase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:110,932,355...110,957,991
Ensembl chr 5:110,932,354...110,957,963 		JBrowse link
G Ulk2 unc-51 like kinase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:61,666,424...61,750,754
Ensembl chr11:61,666,475...61,745,899 		JBrowse link
G Ulk3 unc-51-like kinase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:57,496,423...57,503,516
Ensembl chr 9:57,496,735...57,503,516 		JBrowse link
positive regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag3 BCL2-associated athanogene 3 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 7:128,125,307...128,148,705
Ensembl chr 7:128,125,340...128,148,705 		JBrowse link
G Csnk2a1 casein kinase 2, alpha 1 polypeptide involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:152,068,468...152,123,772
Ensembl chr 2:152,068,759...152,123,772 		JBrowse link
G Hspb8 heat shock protein 8 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 5:116,546,550...116,560,923
Ensembl chr 5:116,546,550...116,560,923 		JBrowse link
G Htt huntingtin involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878 		JBrowse link
G Kat5 K(lysine) acetyltransferase 5 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr19:5,653,042...5,661,584
Ensembl chr19:5,653,042...5,660,265 		JBrowse link
G Zdhhc19 zinc finger, DHHC domain containing 19 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr16:32,315,059...32,326,032
Ensembl chr16:32,315,083...32,380,784 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr19:6,291,508...6,312,332
Ensembl chr19:6,291,698...6,312,365 		JBrowse link
G Atg7 autophagy related 7 ISO RGD PMID:33372336 RGD:407571673 NCBI chr 6:114,620,075...114,837,565
Ensembl chr 6:114,620,058...114,837,575 		JBrowse link
G Becn1 beclin 1, autophagy related involved_in ISO
IEA		 RGD
GO_Central
Ensembl		 PMID:25561470 GO_REF:0000096 GO_REF:0000107 RGD:11561937 NCBI chr11:101,179,084...101,193,112
Ensembl chr11:101,176,778...101,193,112 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 3:108,362,995...108,444,064
Ensembl chr 3:108,363,010...108,443,852 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISS GO_Central GO_REF:0000024 NCBI chr 2:32,815,227...32,851,666
Ensembl chr 2:32,815,228...32,851,626 		JBrowse link
G Moap1 modulator of apoptosis 1 involved_in IMP
ISO		 (PMID:33783314) UniProt
GO_Central		 PMID:33783314 GO_REF:0000119 NCBI chr12:102,706,089...102,709,920
Ensembl chr12:102,708,489...102,709,920 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase, type II, alpha involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:18,847,066...19,003,101
Ensembl chr 2:18,847,066...19,002,937 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase, type II, beta involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr11:97,605,983...97,635,530
Ensembl chr11:97,605,983...97,635,530 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase, type II, gamma involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr10:127,032,936...127,047,508
Ensembl chr10:127,032,936...127,047,454 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein subunit 1 involved_in ISS
IBA		 GO_Central GO_REF:0000024 GO_REF:0000033 NCBI chr 1:127,796,492...127,871,612
Ensembl chr 1:127,796,510...127,871,605 		JBrowse link
G Rab3gap2 RAB3 GTPase activating protein subunit 2 involved_in ISS GO_Central GO_REF:0000024 NCBI chr 1:184,936,287...185,018,953
Ensembl chr 1:184,936,314...185,018,956 		JBrowse link
G Ralb v-ral simian leukemia viral oncogene B involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 1:119,398,035...119,432,512
Ensembl chr 1:119,398,035...119,432,524 		JBrowse link
G Sh3glb1 SH3-domain GRB2-like B1 (endophilin) involved_in ISO
IMP		 (PMID:21068542) GO_Central
UniProt		 PMID:21068542 GO_REF:0000119 NCBI chr 3:144,389,426...144,426,186
Ensembl chr 3:144,389,439...144,426,096 		JBrowse link
G Snx18 sorting nexin 18 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr13:113,728,715...113,755,100
Ensembl chr13:113,728,715...113,755,100 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:59,805,137...59,904,740
Ensembl chr 4:59,805,840...59,904,737 		JBrowse link
G Snx4 sorting nexin 4 involved_in IBA
ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr16:33,071,826...33,119,932
Ensembl chr16:33,071,812...33,120,639 		JBrowse link
G Snx7 sorting nexin 7 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 3:117,575,146...117,662,585
Ensembl chr 3:117,575,296...117,662,585 		JBrowse link
G Trim32 tripartite motif-containing 32 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:65,523,223...65,534,477
Ensembl chr 4:65,523,223...65,534,475 		JBrowse link
G Ulk1 unc-51 like kinase 1 involved_in ISO RGD
GO_Central		 PMID:23448468 GO_REF:0000096 RGD:13208863 NCBI chr 5:110,932,355...110,957,991
Ensembl chr 5:110,932,354...110,957,963 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr  X:7,588,212...7,594,439
Ensembl chr  X:7,580,572...7,594,445 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:109,464,347...109,502,215
Ensembl chr11:109,464,157...109,502,793 		JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenergic receptor, beta 2 involved_in ISS GO_Central GO_REF:0000024 NCBI chr18:62,310,784...62,313,052
Ensembl chr18:62,310,887...62,313,030 		JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in IBA
ISS		 GO_Central GO_REF:0000024 GO_REF:0000033 NCBI chr11:95,990,195...96,015,362
Ensembl chr11:95,990,152...96,002,790 		JBrowse link
G Clec16a C-type lectin domain family 16, member A acts_upstream_of_or_within IMP (PMID:24949970) MGI PMID:24949970 NCBI chr16:10,363,173...10,562,742
Ensembl chr16:10,363,203...10,562,742 		JBrowse link
G Fyco1 FYVE and coiled-coil domain containing 1 involved_in IBA
ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr 9:123,618,565...123,681,110
Ensembl chr 9:123,618,565...123,680,964 		JBrowse link
G Igtp interferon gamma induced GTPase involved_in ISO
IDA		 (PMID:16940170) GO_Central
UniProt		 PMID:16940170 GO_REF:0000119 NCBI chr11:58,090,382...58,098,418
Ensembl chr11:58,090,382...58,098,417 		JBrowse link
G Irgm1 immunity-related GTPase family M member 1 involved_in ISO
IDA		 (PMID:16888103) GO_Central
UniProt		 PMID:16888103 GO_REF:0000119 NCBI chr11:48,756,072...48,762,247
Ensembl chr11:48,752,795...48,762,510 		JBrowse link
G Irgm2 immunity-related GTPase family M member 2 involved_in ISO GO_Central GO_REF:0000119 NCBI chr11:58,105,803...58,113,609
Ensembl chr11:58,090,444...58,113,608 		JBrowse link
G Smcr8 Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:60,668,351...60,679,113
Ensembl chr11:60,668,350...60,679,113 		JBrowse link
G Tom1 target of myb1 trafficking protein involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 8:75,760,326...75,796,749
Ensembl chr 8:75,760,333...75,796,749 		JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl1 ELAV like RNA binding protein 1 ISO RGD PMID:33372336 RGD:407571673 NCBI chr 8:4,334,781...4,375,104
Ensembl chr 8:4,335,382...4,375,413 		JBrowse link
positive regulation of autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Znrf1 zinc and ring finger 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:112,262,652...112,352,352
Ensembl chr 8:112,262,729...112,352,662 		JBrowse link
G Znrf2 zinc and ring finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:54,793,901...54,867,209
Ensembl chr 6:54,793,901...54,870,485 		JBrowse link
positive regulation of lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenergic receptor, beta 2 involved_in ISS GO_Central GO_REF:0000024 NCBI chr18:62,310,784...62,313,052
Ensembl chr18:62,310,887...62,313,030 		JBrowse link
G Htt huntingtin involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878 		JBrowse link
G Sesn2 sestrin 2 acts_upstream_of_or_within IMP (PMID:22958918) MGI PMID:22958918 NCBI chr 4:132,220,115...132,237,767
Ensembl chr 4:132,219,343...132,237,812 		JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 acts_upstream_of_or_within ISO MGI GO_REF:0000008 NCBI chr13:53,486,784...53,531,401
Ensembl chr13:53,486,784...53,531,433 		JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 acts_upstream_of_or_within ISO MGI GO_REF:0000008 NCBI chr12:87,351,832...87,435,129
Ensembl chr12:87,351,832...87,435,129 		JBrowse link
positive regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2/adenovirus E1B interacting protein 3 acts_upstream_of_or_within ISO MGI GO_REF:0000008 NCBI chr 7:138,492,565...138,511,235
Ensembl chr 7:138,492,565...138,511,248 		JBrowse link
G Bnip3l BCL2/adenovirus E1B interacting protein 3-like acts_upstream_of_or_within ISO MGI GO_REF:0000008 NCBI chr14:67,222,688...67,246,580
Ensembl chr14:67,222,688...67,246,326 		JBrowse link
G C9orf72 C9orf72, member of C9orf72-SMCR8 complex involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:35,191,285...35,226,153
Ensembl chr 4:35,191,285...35,226,175 		JBrowse link
G Dcn decorin acts_upstream_of_or_within ISO MGI GO_REF:0000008 NCBI chr10:97,315,362...97,354,025
Ensembl chr10:97,315,471...97,354,005 		JBrowse link
G Epm2a epilepsy, progressive myoclonic epilepsy, type 2 gene alpha acts_upstream_of_or_within ISO
IGI
IMP		 (PMID:20453062) MGI PMID:20453062 GO_REF:0000008 NCBI chr10:11,218,435...11,335,408
Ensembl chr10:11,219,148...11,335,388 		JBrowse link
G Gnai3 G protein subunit alpha i3 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 3:108,014,591...108,053,468
Ensembl chr 3:108,014,596...108,053,462 		JBrowse link
G Gpsm1 G-protein signalling modulator 1 (AGS3-like, C. elegans) involved_in ISO GO_Central GO_REF:0000119 NCBI chr 2:26,204,623...26,238,249
Ensembl chr 2:26,205,527...26,238,249 		JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit acts_upstream_of_or_within IMP (PMID:19273585) MGI PMID:19273585 NCBI chr12:73,948,186...73,994,304
Ensembl chr12:73,948,149...73,994,304 		JBrowse link
G Hmox1 heme oxygenase 1 acts_upstream_of_or_within IMP (PMID:20705711) MGI PMID:20705711 NCBI chr 8:75,820,246...75,827,221
Ensembl chr 8:75,820,249...75,827,217 		JBrowse link
G Ikbkg inhibitor of kappaB kinase gamma involved_in IMP (PMID:23778976) ParkinsonsUK-UCL PMID:23778976 NCBI chr  X:73,436,883...73,498,013
Ensembl chr  X:73,436,896...73,497,460 		JBrowse link
G Il4 interleukin 4 involved_in IDA (PMID:26416964) UniProt PMID:26416964 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496 		JBrowse link
G Kdr kinase insert domain protein receptor acts_upstream_of_or_within ISO MGI GO_REF:0000008 NCBI chr 5:76,093,487...76,139,880
Ensembl chr 5:76,093,487...76,139,118 		JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr11:57,899,711...57,952,860
Ensembl chr11:57,899,890...57,952,860 		JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 involved_in IMP (PMID:23778976) ParkinsonsUK-UCL PMID:23778976 NCBI chr 4:31,963,659...32,023,470
Ensembl chr 4:31,964,097...32,023,467 		JBrowse link
G Pafah1b2 platelet-activating factor acetylhydrolase, isoform 1b, subunit 2 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 9:45,876,609...45,923,988
Ensembl chr 9:45,874,157...45,923,988 		JBrowse link
G Pim2 proviral integration site 2 acts_upstream_of_or_within IMP (PMID:17476689) MGI PMID:17476689 NCBI chr  X:7,744,545...7,749,671
Ensembl chr  X:7,744,501...7,749,671 		JBrowse link
G Pink1 PTEN induced putative kinase 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 4:138,040,718...138,053,631
Ensembl chr 4:138,040,720...138,053,618 		JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in IMP (PMID:23357852) UniProt PMID:23357852 NCBI chr17:66,801,507...66,826,712
Ensembl chr17:66,801,507...66,826,724 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in IBA
ISS
ISO		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 1:74,163,768...74,187,389
Ensembl chr 1:74,164,700...74,187,382 		JBrowse link
G Scoc short coiled-coil protein involved_in ISO
ISS		 GO_Central GO_REF:0000024 GO_REF:0000119 NCBI chr 8:84,161,121...84,185,055
Ensembl chr 8:84,156,713...84,185,020 		JBrowse link
G Sesn1 sestrin 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:41,686,570...41,784,432
Ensembl chr10:41,685,931...41,784,420 		JBrowse link
G Sesn2 sestrin 2 involved_in ISS
IBA
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 4:132,220,115...132,237,767
Ensembl chr 4:132,219,343...132,237,812 		JBrowse link
G Sesn3 sestrin 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:14,187,597...14,237,430
Ensembl chr 9:14,186,363...14,244,397 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO
IDA		 (PMID:18296641), (PMID:21189328) GO_Central
UniProt		 PMID:18296641 PMID:21189328 GO_REF:0000119 NCBI chr10:63,154,784...63,174,814
Ensembl chr10:63,154,784...63,217,483 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISO
IBA
IMP		 (PMID:30568238) GO_Central
UniProt		 PMID:30568238 GO_REF:0000033 GO_REF:0000119 NCBI chr18:35,866,731...35,873,607
Ensembl chr18:35,866,732...35,873,607 		JBrowse link
G Supt5 suppressor of Ty 5, DSIF elongation factor subunit involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 7:28,014,316...28,038,341
Ensembl chr 7:28,014,316...28,038,171 		JBrowse link
G Tbk1 TANK-binding kinase 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr10:121,382,360...121,422,699
Ensembl chr10:121,382,360...121,422,692 		JBrowse link
G Trim13 tripartite motif-containing 13 involved_in IBA
ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr14:61,835,675...61,847,736
Ensembl chr14:61,835,696...61,843,395 		JBrowse link
G Tsc1 TSC complex subunit 1 involved_in ISO RGD
GO_Central		 PMID:23435171 GO_REF:0000096 RGD:10448950 NCBI chr 2:28,531,005...28,581,183
Ensembl chr 2:28,531,240...28,581,179 		JBrowse link
G Tsc2 TSC complex subunit 2 acts_upstream_of_or_within
involved_in		 IMP
ISO
IEA		 (PMID:20453062)
(PMID:23778976)		 MGI
GO_Central
ParkinsonsUK-UCL
Ensembl		 PMID:20453062 PMID:23778976 GO_REF:0000107 GO_REF:0000119 NCBI chr17:24,814,788...24,851,607
Ensembl chr17:24,814,790...24,851,604 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr18:7,868,614...7,929,028
Ensembl chr18:7,868,832...7,929,028 		JBrowse link
G Wdr24 WD repeat domain 24 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:26,042,601...26,047,704
Ensembl chr17:26,042,601...26,047,704 		JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy/beclin 1 regulator 1 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:91,560,464...91,749,194
Ensembl chr 2:91,560,479...91,749,194 		JBrowse link
G Atg7 autophagy related 7 ISO RGD PMID:37042059 RGD:407532700 NCBI chr 6:114,620,075...114,837,565
Ensembl chr 6:114,620,058...114,837,575 		JBrowse link
G Cers1 ceramide synthase 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 8:70,768,425...70,784,238
Ensembl chr 8:70,768,425...70,784,242 		JBrowse link
G Dele1 DAP3 binding cell death enhancer 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr18:38,383,302...38,395,682
Ensembl chr18:38,383,308...38,398,514 		JBrowse link
G Eif2ak1 eukaryotic translation initiation factor 2 alpha kinase 1 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 5:143,803,586...143,839,535
Ensembl chr 5:143,803,543...143,841,069 		JBrowse link
G Fbxo7 F-box protein 7 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000096 GO_REF:0000107 GO_REF:0000119 NCBI chr10:85,856,313...85,887,737
Ensembl chr10:85,857,836...85,887,737 		JBrowse link
G Htt huntingtin involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878 		JBrowse link
G Igtp interferon gamma induced GTPase involved_in ISO GO_Central GO_REF:0000119 NCBI chr11:58,090,382...58,098,418
Ensembl chr11:58,090,382...58,098,417 		JBrowse link
G Irgm1 immunity-related GTPase family M member 1 involved_in ISO
IMP		 (PMID:33510463) GO_Central
UniProt		 PMID:33510463 GO_REF:0000119 NCBI chr11:48,756,072...48,762,247
Ensembl chr11:48,752,795...48,762,510 		JBrowse link
G Irgm2 immunity-related GTPase family M member 2 involved_in ISO GO_Central GO_REF:0000119 NCBI chr11:58,105,803...58,113,609
Ensembl chr11:58,090,444...58,113,608 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in IMP (PMID:31919280) UniProt PMID:31919280 NCBI chr 8:89,373,943...89,415,103
Ensembl chr 8:89,373,943...89,415,102 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO RGD
GO_Central		 PMID:28608965 GO_REF:0000096 GO_REF:0000119 RGD:13432560 NCBI chr17:11,059,227...12,282,257
Ensembl chr17:11,059,271...12,282,248 		JBrowse link
G Slc25a4 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 involved_in IDA (PMID:31618756) UniProt PMID:31618756 NCBI chr 8:46,660,205...46,664,099
Ensembl chr 8:46,659,834...46,664,321 		JBrowse link
G Slc25a5 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 involved_in IDA (PMID:31618756) UniProt PMID:31618756 NCBI chr  X:36,059,250...36,062,461
Ensembl chr  X:36,059,304...36,062,460 		JBrowse link
G Stub1 STIP1 homology and U-Box containing protein 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr17:26,049,608...26,051,893
Ensembl chr17:26,049,479...26,052,378 		JBrowse link
G Ube2a ubiquitin-conjugating enzyme E2A involved_in IMP
ISO		 (PMID:23685073) UniProt
GO_Central		 PMID:23685073 GO_REF:0000119 NCBI chr  X:36,137,948...36,147,875
Ensembl chr  X:36,064,828...36,147,875 		JBrowse link
G Vps13d vacuolar protein sorting 13D involved_in ISO GO_Central GO_REF:0000119 NCBI chr 4:144,597,619...144,921,598
Ensembl chr 4:144,699,192...144,921,575 		JBrowse link
positive regulation of reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:96,798,251...96,807,359
Ensembl chr11:96,798,252...96,807,322 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:130,495,955...130,506,549
Ensembl chr 2:130,495,880...130,506,579 		JBrowse link
G Ufl1 UFM1 specific ligase 1 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:25,247,149...25,281,821
Ensembl chr 4:25,248,600...25,281,821 		JBrowse link
positive regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5if1 ATP synthase inhibitory factor subunit 1 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:132,257,870...132,262,746
Ensembl chr 4:132,257,866...132,260,970 		JBrowse link
G Cdc37 cell division cycle 37 involved_in IDA (PMID:21855797) ParkinsonsUK-UCL PMID:21855797 NCBI chr 9:21,050,727...21,061,230
Ensembl chr 9:21,044,518...21,061,278 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within IMP (PMID:23707074) ARUK-UCL PMID:23707074 NCBI chr 3:89,110,235...89,119,944
Ensembl chr 3:89,110,235...89,116,273 		JBrowse link
G Hdac6 histone deacetylase 6 involved_in IGI (PMID:20457763) ParkinsonsUK-UCL PMID:20457763 NCBI chr  X:7,796,355...7,814,284
Ensembl chr  X:7,796,359...7,814,128 		JBrowse link
G Hk2 hexokinase 2 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 6:82,702,004...82,751,437
Ensembl chr 6:82,702,006...82,751,435 		JBrowse link
G Huwe1 HECT, UBA and WWE domain containing 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr  X:150,583,779...150,718,413
Ensembl chr  X:150,583,803...150,718,413 		JBrowse link
G Mul1 mitochondrial ubiquitin ligase activator of NFKB 1 involved_in IMP (PMID:24709290) ParkinsonsUK-UCL PMID:24709290 NCBI chr 4:138,160,239...138,169,576
Ensembl chr 4:138,161,982...138,169,576 		JBrowse link
G Pink1 PTEN induced putative kinase 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000096 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:138,040,718...138,053,631
Ensembl chr 4:138,040,720...138,053,618 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr17:11,059,227...12,282,257
Ensembl chr17:11,059,271...12,282,248 		JBrowse link
G Tomm7 translocase of outer mitochondrial membrane 7 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 5:24,043,942...24,049,143
Ensembl chr 5:24,043,942...24,049,159 		JBrowse link
G Vdac1 voltage-dependent anion channel 1 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr11:52,251,905...52,280,224
Ensembl chr11:52,251,687...52,280,224 		JBrowse link
positive regulation of xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igtp interferon gamma induced GTPase involved_in ISO GO_Central GO_REF:0000119 NCBI chr11:58,090,382...58,098,418
Ensembl chr11:58,090,382...58,098,417 		JBrowse link
G Irgm1 immunity-related GTPase family M member 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr11:48,756,072...48,762,247
Ensembl chr11:48,752,795...48,762,510 		JBrowse link
G Irgm2 immunity-related GTPase family M member 2 involved_in ISO GO_Central GO_REF:0000119 NCBI chr11:58,105,803...58,113,609
Ensembl chr11:58,090,444...58,113,608 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISS GO_Central GO_REF:0000024 NCBI chr 2:32,815,227...32,851,666
Ensembl chr 2:32,815,228...32,851,626 		JBrowse link
G Mapk3 mitogen-activated protein kinase 3 acts_upstream_of_or_within IGI (PMID:22033934) MGI PMID:22033934 NCBI chr 7:126,358,798...126,364,988
Ensembl chr 7:126,358,773...126,364,991 		JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 acts_upstream_of_or_within IMP (PMID:22033934) MGI PMID:22033934 NCBI chr 6:54,900,927...54,949,655
Ensembl chr 6:54,900,934...54,949,597 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 acts_upstream_of_or_within IMP (PMID:22033934) MGI PMID:22033934 NCBI chr 8:89,373,943...89,415,103
Ensembl chr 8:89,373,943...89,415,102 		JBrowse link
G Optn optineurin involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:5,023,902...5,069,210
Ensembl chr 2:5,025,453...5,068,862 		JBrowse link
G Ripk2 receptor (TNFRSF)-interacting serine-threonine kinase 2 acts_upstream_of_or_within IMP (PMID:22033934) MGI PMID:22033934 NCBI chr 4:16,122,740...16,163,674
Ensembl chr 4:16,122,733...16,163,647 		JBrowse link
G Rnf31 ring finger protein 31 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr14:55,829,199...55,841,131
Ensembl chr14:55,829,165...55,841,150 		JBrowse link
G Tbk1 TANK-binding kinase 1 involved_in IMP (PMID:21617041) ParkinsonsUK-UCL PMID:21617041 NCBI chr10:121,382,360...121,422,699
Ensembl chr10:121,382,360...121,422,692 		JBrowse link
G Tlr2 toll-like receptor 2 acts_upstream_of_or_within IMP (PMID:22033934) MGI PMID:22033934 NCBI chr 3:83,743,579...83,749,045
Ensembl chr 3:83,743,579...83,749,074 		JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within IDA (PMID:24954904) MGI PMID:24954904 NCBI chr 1:87,683,730...87,720,150
Ensembl chr 1:87,683,592...87,720,150 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within IMP (PMID:23918802) MGI PMID:23918802 NCBI chr10:44,144,325...44,240,295
Ensembl chr10:44,144,354...44,240,287 		JBrowse link
G Igtp interferon gamma induced GTPase involved_in ISO GO_Central GO_REF:0000119 NCBI chr11:58,090,382...58,098,418
Ensembl chr11:58,090,382...58,098,417 		JBrowse link
G Irgm1 immunity-related GTPase family M member 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr11:48,756,072...48,762,247
Ensembl chr11:48,752,795...48,762,510 		JBrowse link
G Irgm2 immunity-related GTPase family M member 2 involved_in ISO GO_Central GO_REF:0000119 NCBI chr11:58,105,803...58,113,609
Ensembl chr11:58,090,444...58,113,608 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:7,588,212...7,594,439
Ensembl chr  X:7,580,572...7,594,445 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:121,218,029...121,246,393
Ensembl chr11:121,218,050...121,245,271 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:109,464,347...109,502,215
Ensembl chr11:109,464,157...109,502,793 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within
involved_in		 IDA
IBA		 (PMID:24954904) MGI
GO_Central		 PMID:24954904 GO_REF:0000033 NCBI chr 5:142,615,269...142,655,427
Ensembl chr 5:142,613,453...142,656,343 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip2 ARF interacting protein 2 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 7:105,283,408...105,289,623
Ensembl chr 7:105,283,410...105,289,623 		JBrowse link
G Atg13 autophagy related 13 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:91,504,957...91,540,947
Ensembl chr 2:91,504,963...91,540,921 		JBrowse link
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within IPI (PMID:24954904) MGI PMID:24954904 NCBI chr 1:87,683,730...87,720,150
Ensembl chr 1:87,683,592...87,720,150 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO GO_Central GO_REF:0000119 NCBI chr 1:93,682,627...93,717,328
Ensembl chr 1:93,679,222...93,718,332 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 9:21,176,496...21,186,133
Ensembl chr 9:21,176,589...21,189,068 		JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:75,157,509...75,168,654
Ensembl chr 1:75,157,504...75,168,840 		JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:24,589,179...24,597,141
Ensembl chr 5:24,589,179...24,597,141 		JBrowse link
G Lrba LPS-responsive beige-like anchor involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 3:86,130,763...86,690,001
Ensembl chr 3:86,131,987...86,689,999 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within ISO MGI GO_REF:0000008 NCBI chr 4:147,958,043...147,989,527
Ensembl chr 4:147,958,056...147,989,161 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO MGI GO_REF:0000008 NCBI chr12:112,977,998...113,038,021
Ensembl chr12:112,978,128...113,038,021 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within IMP (PMID:24098492) MGI PMID:24098492 NCBI chr18:30,390,441...30,481,179
Ensembl chr18:30,405,800...30,481,179 		JBrowse link
G Stx17 syntaxin 17 acts_upstream_of_or_within ISO MGI GO_REF:0000008 NCBI chr 4:48,124,912...48,186,507
Ensembl chr 4:48,124,915...48,186,507 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:7,588,212...7,594,439
Ensembl chr  X:7,580,572...7,594,445 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:121,218,029...121,246,393
Ensembl chr11:121,218,050...121,245,271 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:109,464,347...109,502,215
Ensembl chr11:109,464,157...109,502,793 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within
involved_in		 IPI
IBA
ISO		 (PMID:24954904) MGI
GO_Central		 PMID:24954904 GO_REF:0000033 GO_REF:0000119 NCBI chr 5:142,615,269...142,655,427
Ensembl chr 5:142,613,453...142,656,343 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf72 C9orf72, member of C9orf72-SMCR8 complex involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:35,191,285...35,226,153
Ensembl chr 4:35,191,285...35,226,175 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 5:110,987,668...111,022,006
Ensembl chr 5:110,987,845...111,022,011 		JBrowse link
G Efnb1 ephrin B1 involved_in
acts_upstream_of_positive_effect		 IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr  X:98,179,667...98,192,628
Ensembl chr  X:98,179,736...98,192,597 		JBrowse link
G Ephb2 Eph receptor B2 involved_in
acts_upstream_of_positive_effect		 IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:136,374,850...136,563,637
Ensembl chr 4:136,374,850...136,563,299 		JBrowse link
G Ift20 intraflagellar transport 20 involved_in IMP (PMID:24089209) UniProt PMID:24089209 NCBI chr11:78,427,187...78,432,558
Ensembl chr11:78,427,187...78,432,563 		JBrowse link
G Ift88 intraflagellar transport 88 involved_in IMP (PMID:24089209) UniProt PMID:24089209 NCBI chr14:57,661,519...57,755,393
Ensembl chr14:57,661,519...57,755,393 		JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in ISO GO_Central GO_REF:0000119 NCBI chr11:4,430,867...4,544,863
Ensembl chr11:4,430,867...4,544,863 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:148,533,039...148,642,142
Ensembl chr 4:148,533,068...148,642,140 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE type zinc finger containing involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 1:65,225,796...65,317,855
Ensembl chr 1:65,225,842...65,317,854 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in ISO GO_Central GO_REF:0000119 NCBI chr19:5,149,235...5,157,024
Ensembl chr19:5,149,233...5,157,100 		JBrowse link
G Rnf186 ring finger protein 186 acts_upstream_of_positive_effect ISO GO_Central GO_REF:0000119 NCBI chr 4:138,694,430...138,695,676
Ensembl chr 4:138,694,423...138,695,676 		JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within IMP (PMID:23093945) MGI PMID:23093945 NCBI chr17:34,820,073...34,822,535
Ensembl chr17:34,820,065...34,822,664 		JBrowse link
G Tbc1d12 TBC1D12: TBC1 domain family, member 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:38,825,035...38,908,103
Ensembl chr19:38,825,023...38,908,367 		JBrowse link
G Tbc1d14 TBC1 domain family, member 14 involved_in IBA
ISO		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr 5:36,647,948...36,743,611
Ensembl chr 5:36,647,948...36,750,620 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr  X:152,281,228...152,284,558
Ensembl chr  X:152,281,223...152,284,566 		JBrowse link
regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in ISO ComplexPortal
GO_Central		 GO_REF:0000114 GO_REF:0000119 NCBI chr18:46,865,484...46,874,683
Ensembl chr18:46,863,211...46,874,647 		JBrowse link
G Atg5 autophagy related 5 involved_in ISO ComplexPortal
GO_Central		 GO_REF:0000114 GO_REF:0000119 NCBI chr10:44,144,325...44,240,295
Ensembl chr10:44,144,354...44,240,287 		JBrowse link
G Clec16a C-type lectin domain family 16, member A involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:10,363,173...10,562,742
Ensembl chr16:10,363,203...10,562,742 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IMP (PMID:26450516) UniProt PMID:26450516 NCBI chr 7:126,170,571...126,184,991
Ensembl chr 7:126,170,379...126,184,989 		JBrowse link
G Tbc1d25 TBC1 domain family, member 25 involved_in ISO
ISS
IBA		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr  X:8,020,709...8,042,420
Ensembl chr  X:8,020,711...8,042,420 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISO GO_Central
ComplexPortal		 GO_REF:0000114 GO_REF:0000119 NCBI chr 5:144,131,260...144,160,433
Ensembl chr 5:144,131,260...144,160,433 		JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase type 13A2 involved_in ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:22186024 GO_REF:0000033 GO_REF:0000096 GO_REF:0000107 GO_REF:0000119 RGD:13442482 NCBI chr 4:140,711,812...140,734,641
Ensembl chr 4:140,714,184...140,734,641 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IMP (PMID:25878248) UniProt PMID:25878248 NCBI chr 7:126,170,571...126,184,991
Ensembl chr 7:126,170,379...126,184,989 		JBrowse link
G Dnajc16 DnaJ heat shock protein family (Hsp40) member C16 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:141,487,498...141,518,255
Ensembl chr 4:141,487,500...141,518,242 		JBrowse link
regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in ISO ComplexPortal
GO_Central		 GO_REF:0000114 GO_REF:0000119 NCBI chr14:47,778,350...47,805,891
Ensembl chr14:47,778,350...47,808,106 		JBrowse link
G Atp13a2 ATPase type 13A2 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:140,711,812...140,734,641
Ensembl chr 4:140,714,184...140,734,641 		JBrowse link
G Atp6v0a1 ATPase, H+ transporting, lysosomal V0 subunit A1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr11:100,899,262...100,954,545
Ensembl chr11:100,900,278...100,954,545 		JBrowse link
G Becn1 beclin 1, autophagy related involved_in ISO GO_Central
ComplexPortal		 GO_REF:0000114 GO_REF:0000119 NCBI chr11:101,179,084...101,193,112
Ensembl chr11:101,176,778...101,193,112 		JBrowse link
G Hdac6 histone deacetylase 6 involved_in ISO GO_Central GO_REF:0000119 NCBI chr  X:7,796,355...7,814,284
Ensembl chr  X:7,796,359...7,814,128 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in ISO ComplexPortal
GO_Central		 GO_REF:0000114 GO_REF:0000119 NCBI chr18:30,390,441...30,481,179
Ensembl chr18:30,405,800...30,481,179 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 involved_in ISO GO_Central
ComplexPortal		 GO_REF:0000114 GO_REF:0000119 NCBI chr 9:105,520,156...105,564,854
Ensembl chr 9:105,520,177...105,564,856 		JBrowse link
G Prkaa2 protein kinase, AMP-activated, alpha 2 catalytic subunit involved_in IDA (PMID:23332761) UniProt PMID:23332761 NCBI chr 4:104,886,846...104,967,095
Ensembl chr 4:104,887,071...104,967,087 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:58,323,970...58,363,467
Ensembl chr13:58,323,970...58,363,467 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IBA
ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr  X:152,281,228...152,284,558
Ensembl chr  X:152,281,223...152,284,566 		JBrowse link
G Ulk1 unc-51 like kinase 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 5:110,932,355...110,957,991
Ensembl chr 5:110,932,354...110,957,963 		JBrowse link
regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy10 adenylate cyclase 10 involved_in ISO
IEA		 RGD
Ensembl
GO_Central		 PMID:31172217 GO_REF:0000096 GO_REF:0000107 RGD:329403053 NCBI chr 1:165,309,114...165,404,347
Ensembl chr 1:165,312,752...165,404,343 		JBrowse link
G Bnip3l BCL2/adenovirus E1B interacting protein 3-like involved_in IGI (PMID:20200478) ParkinsonsUK-UCL PMID:20200478 NCBI chr14:67,222,688...67,246,580
Ensembl chr14:67,222,688...67,246,326 		JBrowse link
G Csnk2a2 casein kinase 2, alpha prime polypeptide involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 8:96,172,724...96,215,505
Ensembl chr 8:96,172,724...96,216,667 		JBrowse link
G Cttn cortactin involved_in IMP (PMID:20457763) ParkinsonsUK-UCL PMID:20457763 NCBI chr 7:143,989,468...144,024,743
Ensembl chr 7:143,989,470...144,024,746 		JBrowse link
G Dnm1l dynamin 1-like involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr16:16,130,092...16,176,863
Ensembl chr16:16,130,094...16,176,823 		JBrowse link
G Fbxw7 F-box and WD-40 domain protein 7 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 3:84,721,901...84,886,505
Ensembl chr 3:84,722,575...84,886,505 		JBrowse link
G Fkbp8 FK506 binding protein 8 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 8:70,980,371...70,987,978
Ensembl chr 8:70,980,374...70,987,978 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 1:64,769,717...64,776,907
Ensembl chr 1:64,769,717...64,776,910 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 7:24,927,683...24,937,276
Ensembl chr 7:24,927,683...24,937,276 		JBrowse link
G Parl presenilin associated, rhomboid-like involved_in IMP (PMID:21355049) ParkinsonsUK-UCL PMID:21355049 NCBI chr16:20,098,570...20,121,090
Ensembl chr16:20,098,568...20,121,137 		JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr11:60,089,910...60,113,407
Ensembl chr11:60,089,915...60,113,407 		JBrowse link
G Srebf2 sterol regulatory element binding factor 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr15:82,031,455...82,089,580
Ensembl chr15:82,031,382...82,089,580 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr11:118,150,477...118,181,086
Ensembl chr11:118,150,477...118,181,070 		JBrowse link
G Vdac1 voltage-dependent anion channel 1 involved_in IMP (PMID:25470454) ParkinsonsUK-UCL PMID:25470454 NCBI chr11:52,251,905...52,280,224
Ensembl chr11:52,251,687...52,280,224 		JBrowse link
reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:6,291,508...6,312,332
Ensembl chr19:6,291,698...6,312,365 		JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:105,579,798...105,651,554
Ensembl chr12:105,582,395...105,651,470 		JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:75,157,509...75,168,654
Ensembl chr 1:75,157,504...75,168,840 		JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:24,589,179...24,597,141
Ensembl chr 5:24,589,179...24,597,141 		JBrowse link
G Bnip3 BCL2/adenovirus E1B interacting protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:138,492,565...138,511,235
Ensembl chr 7:138,492,565...138,511,248 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:130,495,955...130,506,549
Ensembl chr 2:130,495,880...130,506,579 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:31006538) MGI
GO_Central		 PMID:31006538 GO_REF:0000033 NCBI chr 1:6,284,858...6,346,599
Ensembl chr 1:6,276,421...6,346,872 		JBrowse link
G Retreg1 reticulophagy regulator 1 acts_upstream_of_or_within
involved_in		 IMP
ISO
IBA
IDA		 (PMID:34338405)
(PMID:26040720)		 MGI
GO_Central		 PMID:26040720 PMID:34338405 GO_REF:0000033 GO_REF:0000119 NCBI chr15:25,840,795...25,973,782
Ensembl chr15:25,843,266...25,973,773 		JBrowse link
G Retreg2 reticulophagy regulator family member 2 acts_upstream_of_or_within IDA
IMP		 (PMID:34338405) MGI PMID:34338405 NCBI chr 1:75,119,432...75,124,553
Ensembl chr 1:75,119,422...75,124,557 		JBrowse link
G Retreg3 reticulophagy regulator family member 3 acts_upstream_of_or_within
involved_in		 IMP
ISO
IDA		 (PMID:34338405) MGI
GO_Central		 PMID:34338405 GO_REF:0000119 NCBI chr11:100,987,148...101,010,720
Ensembl chr11:100,987,148...101,010,719 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:59,805,137...59,904,740
Ensembl chr 4:59,805,840...59,904,737 		JBrowse link
G Snx7 sorting nexin 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:117,575,146...117,662,585
Ensembl chr 3:117,575,296...117,662,585 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in IBA
IDA		 (PMID:29056340) GO_Central
UniProt		 PMID:29056340 GO_REF:0000033 NCBI chr18:35,866,731...35,873,607
Ensembl chr18:35,866,732...35,873,607 		JBrowse link
G Tex264 testis expressed gene 264 ER-phagy receptor acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:31006538) MGI
GO_Central		 PMID:31006538 GO_REF:0000033 NCBI chr 9:106,535,945...106,563,151
Ensembl chr 9:106,535,945...106,563,126 		JBrowse link
G Uba5 ubiquitin-like modifier activating enzyme 5 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 9:103,923,786...103,940,767
Ensembl chr 9:103,923,798...103,940,333 		JBrowse link
G Ufc1 ubiquitin-fold modifier conjugating enzyme 1 involved_in ISO
IBA
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 1:171,116,137...171,122,575
Ensembl chr 1:171,116,136...171,122,597 		JBrowse link
G Ufl1 UFM1 specific ligase 1 involved_in IBA
ISS
ISO		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 4:25,247,149...25,281,821
Ensembl chr 4:25,248,600...25,281,821 		JBrowse link
G Ufm1 ubiquitin-fold modifier 1 involved_in ISS
ISO
IBA		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 3:53,760,797...53,771,228
Ensembl chr 3:53,760,797...53,771,251 		JBrowse link
G Ulk1 unc-51 like kinase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:110,932,355...110,957,991
Ensembl chr 5:110,932,354...110,957,963 		JBrowse link
G Ulk2 unc-51 like kinase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:61,666,424...61,750,754
Ensembl chr11:61,666,475...61,745,899 		JBrowse link
G Ulk3 unc-51-like kinase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:57,496,423...57,503,516
Ensembl chr 9:57,496,735...57,503,516 		JBrowse link
ribophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Armc3 armadillo repeat containing 3 involved_in IMP (PMID:34428398) UniProt PMID:34428398 NCBI chr 2:19,203,676...19,315,054
Ensembl chr 2:19,204,113...19,315,052 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:6,284,858...6,346,599
Ensembl chr 1:6,276,421...6,346,872 		JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in ISO (PMID:21893048) MGI PMID:21893048 NCBI chr 6:129,510,155...129,519,294
Ensembl chr 6:129,510,123...129,519,309 		JBrowse link
G Irgq immunity-related GTPase family, Q involved_in ISO (PMID:39481378) UniProt PMID:39481378 NCBI chr 7:24,230,073...24,238,025
Ensembl chr 7:24,230,114...24,238,025 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 5:144,813,305...144,902,657
Ensembl chr 5:144,813,305...144,902,657 		JBrowse link
G Stbd1 starch binding domain 1 involved_in IMP (PMID:27358407)
(PMID:20810658)		 MGI PMID:20810658 PMID:27358407 NCBI chr 5:92,750,910...92,754,438
Ensembl chr 5:92,750,900...92,754,438 		JBrowse link
G Tom1 target of myb1 trafficking protein involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 8:75,760,326...75,796,749
Ensembl chr 8:75,760,333...75,796,749 		JBrowse link
type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr  X:7,796,355...7,814,284
Ensembl chr  X:7,796,359...7,814,128 		JBrowse link
G Mfn2 mitofusin 2 involved_in IMP (PMID:23620051) ParkinsonsUK-UCL PMID:23620051 NCBI chr 4:147,958,043...147,989,527
Ensembl chr 4:147,958,056...147,989,161 		JBrowse link
G Optn optineurin involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:5,023,902...5,069,210
Ensembl chr 2:5,025,453...5,068,862 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr17:11,059,227...12,282,257
Ensembl chr17:11,059,271...12,282,248 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IMP (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chr 5:144,813,305...144,902,657
Ensembl chr 5:144,813,305...144,902,657 		JBrowse link
G Timm23 translocase of inner mitochondrial membrane 23 involved_in ISS UniProt GO_REF:0000024 NCBI chr14:31,902,123...31,923,848
Ensembl chr14:31,902,119...31,923,855 		JBrowse link
xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within IPI (PMID:24954904) MGI PMID:24954904 NCBI chr 1:87,683,730...87,720,150
Ensembl chr 1:87,683,592...87,720,150 		JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in IBA
ISS
ISO		 GO_Central GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr11:95,990,195...96,015,362
Ensembl chr11:95,990,152...96,002,790 		JBrowse link
G Lgals8 lectin, galactose binding, soluble 8 involved_in ISS
ISO		 GO_Central GO_REF:0000024 GO_REF:0000119 NCBI chr13:12,454,283...12,479,857
Ensembl chr13:12,454,296...12,479,825 		JBrowse link
G Mapk3 mitogen-activated protein kinase 3 acts_upstream_of IGI (PMID:22033934) MGI PMID:22033934 NCBI chr 7:126,358,798...126,364,988
Ensembl chr 7:126,358,773...126,364,991 		JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 acts_upstream_of IMP (PMID:22033934) MGI PMID:22033934 NCBI chr 6:54,900,927...54,949,655
Ensembl chr 6:54,900,934...54,949,597 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 acts_upstream_of IMP (PMID:22033934) MGI PMID:22033934 NCBI chr 8:89,373,943...89,415,103
Ensembl chr 8:89,373,943...89,415,102 		JBrowse link
G Ripk2 receptor (TNFRSF)-interacting serine-threonine kinase 2 acts_upstream_of IMP (PMID:22033934) MGI PMID:22033934 NCBI chr 4:16,122,740...16,163,674
Ensembl chr 4:16,122,733...16,163,647 		JBrowse link
G Rnf213 ring finger protein 213 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:119,280,778...119,378,245
Ensembl chr11:119,283,926...119,378,244 		JBrowse link
G Tlr2 toll-like receptor 2 acts_upstream_of IMP (PMID:22033934) MGI PMID:22033934 NCBI chr 3:83,743,579...83,749,045
Ensembl chr 3:83,743,579...83,749,074 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within IPI (PMID:24954904) MGI PMID:24954904 NCBI chr 5:142,615,269...142,655,427
Ensembl chr 5:142,613,453...142,656,343 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28636
    cellular process 18394
      process utilizing autophagic mechanism 562
        autophagy 562
          macroautophagy 336
            aggrephagy + 18
            amphisome-lysosome fusion 0
            autophagosome maturation + 69
            autophagosome organization + 138
            autophagosome-endosome fusion 1
            autophagosome-lysosome fusion + 13
            glycophagy 12
            lipophagy + 8
            lysophagy 0
            mitophagy + 96
            negative regulation of macroautophagy + 37
            nucleophagy + 24
            pexophagy 11
            positive regulation of macroautophagy + 100
            proteaphagy 0
            regulation of macroautophagy + 153
            reticulophagy + 22
            ribophagy 2
            xenophagy + 17
Path 2
Term Annotations click to browse term
  biological_process 28636
    cellular process 18394
      metabolic process 11625
        catabolic process 2904
          autophagy 562
            macroautophagy 336
              aggrephagy + 18
              amphisome-lysosome fusion 0
              autophagosome maturation + 69
              autophagosome organization + 138
              autophagosome-endosome fusion 1
              autophagosome-lysosome fusion + 13
              glycophagy 12
              lipophagy + 8
              lysophagy 0
              mitophagy + 96
              negative regulation of macroautophagy + 37
              nucleophagy + 24
              pexophagy 11
              positive regulation of macroautophagy + 100
              proteaphagy 0
              regulation of macroautophagy + 153
              reticulophagy + 22
              ribophagy 2
              xenophagy + 17
paths to the root