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ONTOLOGY REPORT - ANNOTATIONS

Term:macroautophagy
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Accession:GO:0016236 term browser browse the term
Definition:The autophagic process that proceeds via the formation of an autophagosome.
Synonyms:narrow_synonym: selective autophagy
 broad_synonym: autophagy
 alt_id: GO:0034262
 xref: Reactome:R-HSA-1632852 "Macroautophagy";   Reactome:R-HSA-5205685 "PINK1-PRKN Mediated Mitophagy";   Reactome:R-HSA-8934903 "Receptor Mediated Mitophagy"

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show annotations for term's descendants           Sort by:
macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in ISO (PMID:25484072)
(PMID:11266458)		 ComplexPortal PMID:11266458 PMID:25484072 NCBI chrNW_004955408:35,607,541...35,620,878
Ensembl chrNW_004955408:35,607,541...35,620,878 		JBrowse link
G Atg14 autophagy related 14 involved_in ISO (PMID:23878393) ParkinsonsUK-UCL PMID:23878393 NCBI chrNW_004955466:13,898,311...13,972,506
Ensembl chrNW_004955466:13,898,298...13,972,506 		JBrowse link
G Atg16l1 autophagy related 16 like 1 involved_in ISO (PMID:29317426), (PMID:33586810)
(PMID:11266458)		 UniProt
ComplexPortal		 PMID:11266458 PMID:29317426 PMID:33586810 NCBI chrNW_004955453:2,884,497...2,917,581
Ensembl chrNW_004955453:2,880,928...2,917,581 		JBrowse link
G Atg16l2 autophagy related 16 like 2 involved_in ISO (PMID:11266458) ComplexPortal PMID:11266458 NCBI chrNW_004955414:18,600,904...18,618,048
Ensembl chrNW_004955414:18,604,505...18,618,046 		JBrowse link
G Atg3 autophagy related 3 acts_upstream_of_or_within ISO (PMID:24035364) MGI PMID:24035364 NCBI chrNW_004955427:12,881,454...12,906,399 JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within
involved_in		 ISO (PMID:20453062)
(PMID:25484072)
(PMID:11266458)
(PMID:22496425), (PMID:23704209), (PMID:24035364)		 MGI
ComplexPortal		 PMID:11266458 PMID:20453062 PMID:22496425 PMID:23704209 PMID:24035364 More... NCBI chrNW_004955411:31,501,191...31,646,407
Ensembl chrNW_004955411:31,522,420...31,646,827 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within
involved_in		 ISO (PMID:24035364)
(PMID:22496425), (PMID:23704209)
(PMID:22354037)		 MGI
BHF-UCL		 PMID:22354037 PMID:22496425 PMID:23704209 PMID:24035364 NCBI chrNW_004955429:14,076,976...14,301,034
Ensembl chrNW_004955429:14,076,960...14,304,236 		JBrowse link
G Becn1 beclin 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:23332761)
(PMID:14657337)
(PMID:17468177)		 UniProt
MGI		 PMID:14657337 PMID:17468177 PMID:23332761 NCBI chrNW_004955451:16,616,595...16,625,731
Ensembl chrNW_004955451:16,616,595...16,625,730 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin acts_upstream_of_or_within ISO (PMID:16714284) MGI PMID:16714284 NCBI chrNW_004955493:6,696,520...6,707,849
Ensembl chrNW_004955493:6,696,241...6,707,849 		JBrowse link
G Hdac10 histone deacetylase 10 involved_in ISO (PMID:23801752) UniProt PMID:23801752 NCBI chrNW_004955413:33,272,600...33,277,893
Ensembl chrNW_004955413:33,272,714...33,277,686 		JBrowse link
G Hmox1 heme oxygenase 1 acts_upstream_of ISO (PMID:20705711) MGI PMID:20705711 NCBI chrNW_004955405:43,124,447...43,128,873
Ensembl chrNW_004955405:43,124,510...43,130,979 		JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha involved_in ISO (PMID:28223137) UniProt PMID:28223137 NCBI chrNW_004955422:26,774,466...26,776,024
Ensembl chrNW_004955422:26,774,922...26,775,884 		JBrowse link
G Map1lc3b microtubule associated protein 1 light chain 3 beta involved_in ISO (PMID:28223137) UniProt PMID:28223137 NCBI chrNW_004955541:1,852,388...1,868,194 JBrowse link
G Map1lc3c microtubule associated protein 1 light chain 3 gamma involved_in ISO (PMID:28223137) UniProt PMID:28223137 NCBI chrNW_004955406:5,769,894...5,774,806 JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of ISO (PMID:16714284) MGI PMID:16714284 NCBI chrNW_004955486:2,487,642...2,599,694
Ensembl chrNW_004955486:2,487,642...2,599,694 		JBrowse link
G Myo5a myosin VA ISO RGD PMID:29217155 RGD:42721980 NCBI chrNW_004955409:2,409,503...2,530,539
Ensembl chrNW_004955409:2,428,815...2,530,012 		JBrowse link
G Nbr1 NBR1 autophagy cargo receptor involved_in ISO (PMID:19250911) UniProt PMID:19250911 NCBI chrNW_004955451:16,871,091...16,896,090
Ensembl chrNW_004955451:16,871,586...16,895,179 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of ISO (PMID:17468177) MGI PMID:17468177 NCBI chrNW_004955402:11,699,434...11,742,899
Ensembl chrNW_004955402:11,699,434...11,742,899 		JBrowse link
G Pdcd6ip programmed cell death 6 interacting protein involved_in ISO (PMID:25686249) UniProt PMID:25686249 NCBI chrNW_004955421:1,034,843...1,109,637
Ensembl chrNW_004955421:1,034,843...1,110,438 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004955414:31,896,161...31,999,730
Ensembl chrNW_004955414:31,896,161...31,999,730 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004955406:40,247,690...40,317,556
Ensembl chrNW_004955406:40,247,382...40,317,556 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in ISO (PMID:23332761), (PMID:25578879) ParkinsonsUK-UCL PMID:23332761 PMID:25578879 NCBI chrNW_004955402:28,081,150...28,195,305
Ensembl chrNW_004955402:28,081,098...28,196,252 		JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase acts_upstream_of ISO (PMID:17476689) MGI PMID:17476689 NCBI chrNW_004955543:444,314...449,201
Ensembl chrNW_004955543:444,314...449,201 		JBrowse link
G Plaa phospholipase A2 activating protein involved_in ISO (PMID:27753622) UniProt PMID:27753622 NCBI chrNW_004955472:7,879,196...7,915,040
Ensembl chrNW_004955472:7,879,196...7,919,834 		JBrowse link
G Rab2a RAB2A, member RAS oncogene family involved_in ISO (PMID:28483915)
(PMID:28063257)		 UniProt PMID:28063257 PMID:28483915 NCBI chrNW_004955444:18,091,640...18,169,971
Ensembl chrNW_004955444:18,091,640...18,169,971 		JBrowse link
G Rab2b RAB2B, member RAS oncogene family involved_in ISO (PMID:28063257) UniProt PMID:28063257 NCBI chrNW_004955550:2,180,326...2,195,523
Ensembl chrNW_004955550:2,180,326...2,195,523 		JBrowse link
G Snf8 SNF8 subunit of ESCRT-II involved_in ISO (PMID:38423010) UniProt PMID:38423010 NCBI chrNW_004955451:12,396,625...12,406,014
Ensembl chrNW_004955451:12,396,625...12,406,014 		JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO (PMID:20168092) GO_Central PMID:20168092 NCBI chrNW_004955408:757,426...764,989
Ensembl chrNW_004955408:757,426...771,615 		JBrowse link
G Tbc1d5 TBC1 domain family member 5 involved_in ISO (PMID:24603492) ParkinsonsUK-UCL PMID:24603492 NCBI chrNW_004955430:9,411,865...9,966,710
Ensembl chrNW_004955430:9,410,475...9,940,460 		JBrowse link
G Tcirg1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 acts_upstream_of_or_within ISO (PMID:23704209) MGI PMID:23704209 NCBI chrNW_004955422:17,768,469...17,778,976
Ensembl chrNW_004955422:17,768,469...17,779,003 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISO (PMID:25484072) ComplexPortal PMID:25484072 NCBI chrNW_004955460:14,106,711...14,137,983
Ensembl chrNW_004955460:14,106,711...14,138,033 		JBrowse link
G Tmem74 transmembrane protein 74 involved_in ISO (PMID:18294959) HGNC PMID:18294959 NCBI chrNW_004955417:31,328,352...31,334,228 JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 acts_upstream_of_or_within ISO (PMID:24713655) MGI PMID:24713655 NCBI chrNW_004955422:26,640,239...26,649,291
Ensembl chrNW_004955422:26,640,239...26,649,291 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:20529957) GO_Central PMID:20529957 NCBI chrNW_004955432:3,575,034...3,617,029
Ensembl chrNW_004955432:3,575,272...3,616,691 		JBrowse link
G Ubxn6 UBX domain protein 6 involved_in ISO (PMID:27753622) UniProt PMID:27753622 NCBI chrNW_004955495:4,456,182...4,465,954
Ensembl chrNW_004955495:4,456,308...4,466,254 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:22354037)
(PMID:21855797)
(PMID:21258367)		 BHF-UCL
ParkinsonsUK-UCL
MGI		 PMID:21258367 PMID:21855797 PMID:22354037 NCBI chrNW_004955482:760,200...777,133
Ensembl chrNW_004955482:761,811...777,133 		JBrowse link
G Vcp valosin containing protein involved_in ISO (PMID:27753622) UniProt PMID:27753622 NCBI chrNW_004955472:1,111,649...1,124,076
Ensembl chrNW_004955472:1,107,164...1,124,076 		JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004955523:2,334,175...2,388,612
Ensembl chrNW_004955523:2,334,175...2,388,612 		JBrowse link
aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 involved_in ISO (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chrNW_004955411:31,501,191...31,646,407
Ensembl chrNW_004955411:31,522,420...31,646,827 		JBrowse link
G Map1lc3c microtubule associated protein 1 light chain 3 gamma involved_in ISO (PMID:28404643) UniProt PMID:28404643 NCBI chrNW_004955406:5,769,894...5,774,806 JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO (PMID:25723488), (PMID:33397898)
(PMID:17580304), (PMID:22017874), (PMID:29343546), (PMID:29507397), (PMID:31857589), (PMID:37306101), (PMID:37802024)
(PMID:28404643)		 UniProt PMID:17580304 PMID:22017874 PMID:25723488 PMID:28404643 PMID:29343546 More... NCBI chrNW_004955408:757,426...764,989
Ensembl chrNW_004955408:757,426...771,615 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:21143716) UniProt PMID:21143716 NCBI chrNW_004955432:3,575,034...3,617,029
Ensembl chrNW_004955432:3,575,272...3,616,691 		JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 involved_in ISO (PMID:20168092), (PMID:20417604) UniProt PMID:20168092 PMID:20417604 NCBI chrNW_004955474:4,764,902...5,045,421
Ensembl chrNW_004955474:4,870,835...5,042,310 		JBrowse link
G Wdr81 WD repeat domain 81 involved_in ISO (PMID:28404643) UniProt PMID:28404643 NCBI chrNW_004955481:1,450,127...1,462,564
Ensembl chrNW_004955481:1,449,350...1,462,555 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO (PMID:25215947)
(PMID:20921139), (PMID:23524951)		 ParkinsonsUK-UCL
UniProt		 PMID:20921139 PMID:23524951 PMID:25215947 NCBI chrNW_004955422:1,455,392...1,644,368
Ensembl chrNW_004955422:1,455,380...1,644,452 		JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO (PMID:29180427) UniProt PMID:29180427 NCBI chrNW_004955573:759,222...763,222
Ensembl chrNW_004955573:759,222...763,222 		JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO (PMID:30930081) MGI PMID:30930081 NCBI chrNW_004955460:10,997,554...11,009,435
Ensembl chrNW_004955460:10,996,796...11,009,525 		JBrowse link
G Atg10 autophagy related 10 involved_in ISO (PMID:16963840) UniProt PMID:16963840 NCBI chrNW_004955418:28,118,843...28,368,358
Ensembl chrNW_004955418:28,119,912...28,363,714 		JBrowse link
G Atg101 autophagy related 101 involved_in ISO (PMID:19597335)
(PMID:19225151)		 UniProt
ComplexPortal		 PMID:19225151 PMID:19597335 NCBI chrNW_004955547:2,436,974...2,446,849
Ensembl chrNW_004955547:2,436,895...2,446,849 		JBrowse link
G Atg12 autophagy related 12 involved_in ISO (PMID:11266458) ComplexPortal PMID:11266458 NCBI chrNW_004955408:35,607,541...35,620,878
Ensembl chrNW_004955408:35,607,541...35,620,878 		JBrowse link
G Atg13 autophagy related 13 involved_in
acts_upstream_of_or_within		 ISO (PMID:19211835)
(PMID:19225151)
(PMID:19258318)		 UniProt
ComplexPortal
MGI		 PMID:19211835 PMID:19225151 PMID:19258318 NCBI chrNW_004955422:1,398,646...1,432,440
Ensembl chrNW_004955422:1,398,593...1,432,438 		JBrowse link
G Atg14 autophagy related 14 involved_in ISO (PMID:19270696)
(PMID:20713597)		 UniProt PMID:19270696 PMID:20713597 NCBI chrNW_004955466:13,898,311...13,972,506
Ensembl chrNW_004955466:13,898,298...13,972,506 		JBrowse link
G Atg16l1 autophagy related 16 like 1 involved_in ISO (PMID:11266458)
(PMID:30778222)		 ComplexPortal
UniProt		 PMID:11266458 PMID:30778222 NCBI chrNW_004955453:2,884,497...2,917,581
Ensembl chrNW_004955453:2,880,928...2,917,581 		JBrowse link
G Atg16l2 autophagy related 16 like 2 NOT|involved_in ISO (PMID:22082872)
(PMID:11266458)		 UniProt
ComplexPortal		 PMID:11266458 PMID:22082872 NCBI chrNW_004955414:18,600,904...18,618,048
Ensembl chrNW_004955414:18,604,505...18,618,046 		JBrowse link
G Atg2a autophagy related 2A involved_in ISO (PMID:28561066) UniProt PMID:28561066 NCBI chrNW_004955422:20,261,749...20,290,879
Ensembl chrNW_004955422:20,271,330...20,291,875 		JBrowse link
G Atg3 autophagy related 3 acts_upstream_of_or_within
involved_in		 ISO (PMID:21220506)
(PMID:20723759)
(PMID:24747438)
(PMID:33446636)		 MGI
UniProt		 PMID:20723759 PMID:21220506 PMID:24747438 PMID:33446636 NCBI chrNW_004955427:12,881,454...12,906,399 JBrowse link
G Atg4a autophagy related 4A cysteine peptidase involved_in ISO (PMID:21177865) UniProt PMID:21177865 NCBI chrNW_004955490:7,765,145...7,825,126
Ensembl chrNW_004955490:7,762,623...7,788,705 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in ISO (PMID:25578879)
(PMID:21177865)		 ParkinsonsUK-UCL
UniProt		 PMID:21177865 PMID:25578879 NCBI chrNW_004955542:164,969...192,498
Ensembl chrNW_004955542:166,365...193,006 		JBrowse link
G Atg4c autophagy related 4C cysteine peptidase involved_in ISO (PMID:21177865) UniProt PMID:21177865 NCBI chrNW_004955423:26,813,865...26,993,308
Ensembl chrNW_004955423:26,928,147...26,993,308 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in ISO (PMID:21177865) UniProt PMID:21177865 NCBI chrNW_004955495:1,739,982...1,746,362
Ensembl chrNW_004955495:1,739,982...1,746,362 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within
involved_in		 ISO (PMID:23704209)
(PMID:11266458)
(PMID:23202584)		 RGD
MGI
UniProt		 PMID:11266458 PMID:16420522 PMID:23202584 PMID:23704209 RGD:1643189 NCBI chrNW_004955411:31,501,191...31,646,407
Ensembl chrNW_004955411:31,522,420...31,646,827 		JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within		 ISO (PMID:22170151)
(PMID:23704209)
(PMID:20080761)		 UniProt
MGI
ParkinsonsUK-UCL		 PMID:20080761 PMID:22170151 PMID:23704209 NCBI chrNW_004955429:14,076,976...14,301,034
Ensembl chrNW_004955429:14,076,960...14,304,236 		JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in		 ISO (PMID:15755735), (PMID:22456507)
(PMID:23402761)
(PMID:22456507)
(PMID:29180427)
(PMID:29437695), (PMID:32513819), (PMID:33468622)		 MGI
UniProt		 PMID:15755735 PMID:22456507 PMID:23402761 PMID:29180427 PMID:29437695 More... NCBI chrNW_004955453:14,203,798...14,214,760
Ensembl chrNW_004955453:14,206,065...14,213,729 		JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within ISO (PMID:15755735) MGI PMID:15755735 NCBI chrNW_004955491:5,458,152...5,467,260
Ensembl chrNW_004955491:5,458,398...5,465,551 		JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chrNW_004955482:7,233,336...7,295,754
Ensembl chrNW_004955482:7,233,336...7,295,754 		JBrowse link
G Becn1 beclin 1 involved_in ISO (PMID:23332761)
(PMID:25891078)		 RGD
UniProt		 PMID:16420522 PMID:23332761 PMID:25891078 RGD:1643189 NCBI chrNW_004955451:16,616,595...16,625,731
Ensembl chrNW_004955451:16,616,595...16,625,730 		JBrowse link
G Ctsd cathepsin D acts_upstream_of_or_within ISO (PMID:15452145) MGI PMID:15452145 NCBI chrNW_004955422:13,576,315...13,584,267
Ensembl chrNW_004955422:13,576,202...13,584,298 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO (PMID:21072319) BHF-UCL PMID:21072319 NCBI chrNW_004955435:12,531,651...12,626,969
Ensembl chrNW_004955435:12,531,642...12,627,874 		JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in ISO (PMID:23182941) UniProt PMID:23182941 NCBI chrNW_004955467:13,144,659...13,146,434
Ensembl chrNW_004955467:13,144,659...13,146,434 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO (PMID:24430976) MGI PMID:24430976 NCBI chrNW_004955436:14,925,452...14,982,357
Ensembl chrNW_004955436:14,926,123...14,983,180 		JBrowse link
G Irgm immunity related GTPase M involved_in ISO (PMID:16888103) UniProt PMID:16888103 NCBI chrNW_004955408:2,338,510...2,344,566 JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha involved_in ISO PMID:11060023
(PMID:24290141)		 UniProt PMID:11060023 PMID:24290141 RGD:8554284 NCBI chrNW_004955422:26,774,466...26,776,024
Ensembl chrNW_004955422:26,774,922...26,775,884 		JBrowse link
G Map1lc3b microtubule associated protein 1 light chain 3 beta involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chrNW_004955541:1,852,388...1,868,194 JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of ISO (PMID:23695157) MGI PMID:23695157 NCBI chrNW_004955498:6,329,402...6,444,708
Ensembl chrNW_004955498:6,329,275...6,445,169 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) MGI PMID:23455425 NCBI chrNW_004955538:3,559,738...3,616,862
Ensembl chrNW_004955538:3,559,724...3,619,649 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within
involved_in		 ISO (PMID:24098492)
(PMID:33637724)		 RGD
MGI
UniProt		 PMID:12453151 PMID:24098492 PMID:33637724 RGD:2303129 NCBI chrNW_004955402:28,081,150...28,195,305
Ensembl chrNW_004955402:28,081,098...28,196,252 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:15452145) MGI PMID:15452145 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (PMID:22939626) UniProt PMID:22939626 NCBI chrNW_004955424:19,393,589...19,421,373
Ensembl chrNW_004955424:19,393,589...19,421,373 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO (PMID:22452336) UniProt PMID:22452336 NCBI chrNW_004955502:2,947,170...2,980,634
Ensembl chrNW_004955502:2,950,562...2,980,634 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in ISO (PMID:18448665) GO_Central PMID:18448665 NCBI chrNW_004955428:4,192,357...4,211,740
Ensembl chrNW_004955428:4,190,061...4,211,740 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:19956673) GO_Central PMID:19956673 NCBI chrNW_004955429:15,103,792...15,167,498 JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 involved_in ISO (PMID:19258318)
(PMID:19225151), (PMID:23392225), (PMID:28890335)		 UniProt
ComplexPortal		 PMID:19225151 PMID:19258318 PMID:23392225 PMID:28890335 NCBI chrNW_004955454:12,201,566...12,257,383
Ensembl chrNW_004955454:12,200,750...12,257,389 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in ISO (PMID:26416964) UniProt PMID:26416964 NCBI chrNW_004955453:15,243,125...15,259,086
Ensembl chrNW_004955453:15,242,954...15,257,976 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISO (PMID:30568238)
(PMID:30568238), (PMID:30842662), (PMID:37535724)		 UniProt PMID:30568238 PMID:30842662 PMID:37535724 NCBI chrNW_004955418:1,091,022...1,097,064
Ensembl chrNW_004955418:1,083,613...1,100,448 		JBrowse link
G Stx12 syntaxin 12 involved_in ISO (PMID:24095276) ParkinsonsUK-UCL PMID:24095276 NCBI chrNW_004955452:6,977,813...7,015,281
Ensembl chrNW_004955452:6,977,101...7,015,281 		JBrowse link
G Synpo2 synaptopodin 2 involved_in ISO PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chrNW_004955428:21,152,210...21,323,254
Ensembl chrNW_004955428:21,154,277...21,360,960 		JBrowse link
G Tcirg1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 acts_upstream_of_or_within ISO (PMID:23908015) MGI PMID:23908015 NCBI chrNW_004955422:17,768,469...17,778,976
Ensembl chrNW_004955422:17,768,469...17,779,003 		JBrowse link
G Tmem41b transmembrane protein 41B involved_in ISO (PMID:30093494), (PMID:30126924), (PMID:30933966) UniProt PMID:30093494 PMID:30126924 PMID:30933966 NCBI chrNW_004955414:25,063,497...25,082,901
Ensembl chrNW_004955414:25,061,400...25,083,663 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in ISO (PMID:19056683) GO_Central PMID:19056683 NCBI chrNW_004955422:26,640,239...26,649,291
Ensembl chrNW_004955422:26,640,239...26,649,291 		JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in ISO (PMID:23524951) UniProt PMID:23524951 NCBI chrNW_004955422:9,925,765...9,950,354
Ensembl chrNW_004955422:9,932,680...9,949,100 		JBrowse link
G Trim32 tripartite motif containing 32 involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chrNW_004955419:11,151,751...11,168,046
Ensembl chrNW_004955419:11,151,751...11,168,041 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:20529957) GO_Central PMID:20529957 NCBI chrNW_004955432:3,575,034...3,617,029
Ensembl chrNW_004955432:3,575,272...3,616,691 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO (PMID:19225151), (PMID:28890335)
(PMID:19258318)		 UniProt
ComplexPortal		 PMID:19225151 PMID:19258318 PMID:28890335 NCBI chrNW_004955482:760,200...777,133
Ensembl chrNW_004955482:761,811...777,133 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO (PMID:30093494), (PMID:30933966)
(PMID:28890335)		 UniProt PMID:28890335 PMID:30093494 PMID:30933966 NCBI chrNW_004955451:3,265,109...3,370,610
Ensembl chrNW_004955451:3,265,109...3,370,610 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO (PMID:28561066) UniProt PMID:28561066 NCBI chrNW_004955543:597,796...604,163
Ensembl chrNW_004955543:597,814...603,963 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in ISO (PMID:28561066) UniProt PMID:28561066 NCBI chrNW_004955506:515,364...556,507
Ensembl chrNW_004955506:515,327...560,075 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:28561066) UniProt PMID:28561066 NCBI chrNW_004955478:4,309,975...4,341,107
Ensembl chrNW_004955478:4,309,880...4,343,934 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in ISO (PMID:28890335)
(PMID:20505359), (PMID:28561066)		 UniProt PMID:20505359 PMID:28561066 PMID:28890335 NCBI chrNW_004955460:10,090,343...10,132,724
Ensembl chrNW_004955460:10,090,349...10,130,384 		JBrowse link
autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in ISO (PMID:10625637) ComplexPortal PMID:10625637 NCBI chrNW_004955466:13,898,311...13,972,506
Ensembl chrNW_004955466:13,898,298...13,972,506 		JBrowse link
G Becn1 beclin 1 involved_in ISO (PMID:10625637) ComplexPortal PMID:10625637 NCBI chrNW_004955451:16,616,595...16,625,731
Ensembl chrNW_004955451:16,616,595...16,625,730 		JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004955541:3,216,972...3,223,636
Ensembl chrNW_004955541:3,216,972...3,223,634 		JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004955402:1,196,912...1,199,480 JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004955584:1,156,828...1,160,056
Ensembl chrNW_004955584:1,156,828...1,160,056 		JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004955407:6,014,478...6,047,916
Ensembl chrNW_004955407:6,014,478...6,047,916 		JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004955422:27,482,239...27,526,798
Ensembl chrNW_004955422:27,478,698...27,526,575 		JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004955417:96,674...135,601
Ensembl chrNW_004955417:96,865...137,739 		JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004955506:1,987,710...1,994,731
Ensembl chrNW_004955506:1,987,195...1,994,666 		JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004955403:46,467,463...46,478,897
Ensembl chrNW_004955403:46,467,463...46,478,897 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin acts_upstream_of_or_within ISO (PMID:16714284) MGI PMID:16714284 NCBI chrNW_004955493:6,696,520...6,707,849
Ensembl chrNW_004955493:6,696,241...6,707,849 		JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within ISO (PMID:27715390) MGI PMID:27715390 NCBI chrNW_004955420:24,795,416...24,807,790
Ensembl chrNW_004955420:24,795,496...24,811,134 		JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within ISO (PMID:23479740) MGI PMID:23479740 NCBI chrNW_004955402:31,422,848...31,532,189
Ensembl chrNW_004955402:31,422,848...31,532,289 		JBrowse link
G Irgm immunity related GTPase M involved_in ISO (PMID:21757726) UniProt PMID:21757726 NCBI chrNW_004955408:2,338,510...2,344,566 JBrowse link
G Lamp2 lysosomal associated membrane protein 2 involved_in ISO (PMID:27628032) UniProt PMID:27628032 NCBI chrNW_004955572:1,423,048...1,464,443
Ensembl chrNW_004955572:1,422,981...1,462,622 		JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha involved_in ISO (PMID:28223137) UniProt PMID:28223137 NCBI chrNW_004955422:26,774,466...26,776,024
Ensembl chrNW_004955422:26,774,922...26,775,884 		JBrowse link
G Map1lc3b microtubule associated protein 1 light chain 3 beta involved_in ISO (PMID:28223137) UniProt PMID:28223137 NCBI chrNW_004955541:1,852,388...1,868,194 JBrowse link
G Map1lc3c microtubule associated protein 1 light chain 3 gamma involved_in ISO (PMID:28223137) UniProt PMID:28223137 NCBI chrNW_004955406:5,769,894...5,774,806 JBrowse link
G Mcoln1 mucolipin TRP cation channel 1 acts_upstream_of_or_within ISO (PMID:20600908) MGI PMID:20600908 NCBI chrNW_004955563:1,703,408...1,712,908
Ensembl chrNW_004955563:1,703,416...1,745,996 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within ISO (PMID:29514215) MGI PMID:29514215 NCBI chrNW_004955428:13,519,285...13,548,007
Ensembl chrNW_004955428:13,519,277...13,544,695 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in ISO (PMID:10625637) ComplexPortal PMID:10625637 NCBI chrNW_004955402:28,081,150...28,195,305
Ensembl chrNW_004955402:28,081,098...28,196,252 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 involved_in ISO (PMID:10625637) ComplexPortal PMID:10625637 NCBI chrNW_004955501:7,604,934...7,681,947
Ensembl chrNW_004955501:7,604,501...7,681,947 		JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in ISO (PMID:28306502), (PMID:30704899)
(PMID:30704899)		 UniProt PMID:28306502 PMID:30704899 NCBI chrNW_004955431:140,999...206,570
Ensembl chrNW_004955431:140,922...206,951 		JBrowse link
G Snap29 synaptosome associated protein 29 involved_in ISO (PMID:23217709) UniProt PMID:23217709 NCBI chrNW_004955442:19,419,381...19,446,782
Ensembl chrNW_004955442:19,419,821...19,446,665 		JBrowse link
G Snapin SNAP associated protein acts_upstream_of_or_within ISO (PMID:20920792)
(PMID:22797916)		 MGI PMID:20920792 PMID:22797916 NCBI chrNW_004955545:306,546...308,229
Ensembl chrNW_004955545:306,546...308,229 		JBrowse link
G Snx14 sorting nexin 14 involved_in ISO (PMID:25848753) UniProt PMID:25848753 NCBI chrNW_004955411:12,967,980...13,048,839
Ensembl chrNW_004955411:12,969,114...13,048,836 		JBrowse link
G Stx17 syntaxin 17 involved_in ISO (PMID:23217709), (PMID:24554770)
(PMID:28306502)		 UniProt PMID:23217709 PMID:24554770 PMID:28306502 NCBI chrNW_004955419:25,674,771...25,741,357
Ensembl chrNW_004955419:25,674,771...25,741,355 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISO (PMID:22342342) UniProt PMID:22342342 NCBI chrNW_004955460:14,106,711...14,137,983
Ensembl chrNW_004955460:14,106,711...14,138,033 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:23459205) GO_Central PMID:23459205 NCBI chrNW_004955432:3,575,034...3,617,029
Ensembl chrNW_004955432:3,575,272...3,616,691 		JBrowse link
G Uvrag UV radiation resistance associated involved_in ISO (PMID:28306502) UniProt PMID:28306502 NCBI chrNW_004955414:15,733,116...16,043,555
Ensembl chrNW_004955414:15,731,519...16,043,555 		JBrowse link
G Vamp7 vesicle associated membrane protein 7 NOT|involved_in ISO (PMID:23217709) UniProt PMID:23217709 NCBI chrNW_004955594:20,496...72,648
Ensembl chrNW_004955594:18,727...72,654 		JBrowse link
G Vamp8 vesicle associated membrane protein 8 involved_in ISO (PMID:23217709) UniProt PMID:23217709 NCBI chrNW_004955424:1,922,830...1,926,844
Ensembl chrNW_004955424:1,923,092...1,926,728 		JBrowse link
G Vcp valosin containing protein involved_in ISO (PMID:20104022) UniProt PMID:20104022 NCBI chrNW_004955472:1,111,649...1,124,076
Ensembl chrNW_004955472:1,107,164...1,124,076 		JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT|involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chrNW_004955438:1,320,862...1,351,344
Ensembl chrNW_004955438:1,321,845...1,347,535 		JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chrNW_004955415:13,791,611...13,813,500
Ensembl chrNW_004955415:13,791,611...13,813,500 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in ISO (PMID:24554770), (PMID:25783203) UniProt PMID:24554770 PMID:25783203 NCBI chrNW_004955482:6,333,282...6,352,369
Ensembl chrNW_004955482:6,332,366...6,353,834 		JBrowse link
G Vps33b VPS33B late endosome and lysosome associated NOT|involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chrNW_004955416:15,049,849...15,071,108
Ensembl chrNW_004955416:15,048,106...15,071,102 		JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B NOT|involved_in ISO (PMID:23217709) UniProt PMID:23217709 NCBI chrNW_004955466:2,527,750...2,549,599
Ensembl chrNW_004955466:2,527,753...2,549,568 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 NOT|involved_in ISO (PMID:20505359) UniProt PMID:20505359 NCBI chrNW_004955460:10,090,343...10,132,724
Ensembl chrNW_004955460:10,090,349...10,130,384 		JBrowse link
autophagosome membrane docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in ISO (PMID:25686604) GO_Central PMID:25686604 NCBI chrNW_004955466:13,898,311...13,972,506
Ensembl chrNW_004955466:13,898,298...13,972,506 		JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chrNW_004955482:7,233,336...7,295,754
Ensembl chrNW_004955482:7,233,336...7,295,754 		JBrowse link
G Calm1 calmodulin 1 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chrNW_004955438:12,842,437...12,854,028
Ensembl chrNW_004955438:12,842,437...12,854,028 		JBrowse link
G Calm2 calmodulin 2 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chrNW_004955441:13,973,147...13,988,665
Ensembl chrNW_004955574:672,300...680,924
Ensembl chrNW_004955438:672,300...680,924 		JBrowse link
G Calm3 calmodulin 3 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chrNW_004955574:672,441...680,924
Ensembl chrNW_004955574:672,300...680,924 		JBrowse link
G Snap29 synaptosome associated protein 29 involved_in ISO (PMID:25686604) GO_Central PMID:25686604 NCBI chrNW_004955442:19,419,381...19,446,782
Ensembl chrNW_004955442:19,419,821...19,446,665 		JBrowse link
G Stx17 syntaxin 17 involved_in ISO (PMID:25686604) GO_Central PMID:25686604 NCBI chrNW_004955419:25,674,771...25,741,357
Ensembl chrNW_004955419:25,674,771...25,741,355 		JBrowse link
G Vamp8 vesicle associated membrane protein 8 involved_in ISO (PMID:25686604) GO_Central PMID:25686604 NCBI chrNW_004955424:1,922,830...1,926,844
Ensembl chrNW_004955424:1,923,092...1,926,728 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chrNW_004955451:3,265,109...3,370,610
Ensembl chrNW_004955451:3,265,109...3,370,610 		JBrowse link
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:22186024) ParkinsonsUK-UCL PMID:22186024 NCBI chrNW_004955527:1,805,854...1,823,623
Ensembl chrNW_004955527:1,806,009...1,823,344 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) ARUK-UCL PMID:23707074 NCBI chrNW_004955545:1,682,097...1,689,373
Ensembl chrNW_004955545:1,682,097...1,689,376 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004955414:31,896,161...31,999,730
Ensembl chrNW_004955414:31,896,161...31,999,730 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004955406:40,247,690...40,317,556
Ensembl chrNW_004955406:40,247,382...40,317,556 		JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:25365221) MGI PMID:25365221 NCBI chrNW_004955416:11,084,448...11,168,478
Ensembl chrNW_004955416:11,086,176...11,168,332 		JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within ISO (PMID:25365221) MGI PMID:25365221 NCBI chrNW_004955466:2,389,893...2,453,487
Ensembl chrNW_004955466:2,390,527...2,451,664 		JBrowse link
autophagosome-endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rubcnl rubicon like autophagy enhancer involved_in ISO (PMID:28306502) UniProt PMID:28306502 NCBI chrNW_004955431:140,999...206,570
Ensembl chrNW_004955431:140,922...206,951 		JBrowse link
autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ARF like GTPase 8B involved_in ISO (PMID:28325809) UniProt PMID:28325809 NCBI chrNW_004955421:8,231,337...8,276,907
Ensembl chrNW_004955421:8,231,582...8,276,907 		JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:30538141) UniProt PMID:30538141 NCBI chrNW_004955527:1,805,854...1,823,623
Ensembl chrNW_004955527:1,806,009...1,823,344 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:26450516) UniProt PMID:26450516 NCBI chrNW_004955493:6,696,520...6,707,849
Ensembl chrNW_004955493:6,696,241...6,707,849 		JBrowse link
G Diaph3 diaphanous related formin 3 acts_upstream_of_or_within ISO (PMID:33036023) MGI PMID:33036023 NCBI chrNW_004955404:44,653,308...45,106,943
Ensembl chrNW_004955404:44,653,501...45,105,966 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO (PMID:29727621) UniProt PMID:29727621 NCBI chrNW_004955429:6,231,135...6,399,672
Ensembl chrNW_004955429:6,336,355...6,399,672 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO (PMID:29727621) UniProt PMID:29727621 NCBI chrNW_004955451:13,842,814...13,856,301
Ensembl chrNW_004955451:13,842,814...13,856,302 		JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 involved_in ISO (PMID:28325809) UniProt PMID:28325809 NCBI chrNW_004955451:18,043,194...18,079,808
Ensembl chrNW_004955451:18,043,194...18,079,873 		JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in ISO (PMID:28306502) UniProt PMID:28306502 NCBI chrNW_004955431:140,999...206,570
Ensembl chrNW_004955431:140,922...206,951 		JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) UniProt PMID:23023224 NCBI chrNW_004955405:43,091,632...43,115,016
Ensembl chrNW_004955405:43,091,633...43,115,016 		JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO (PMID:33422265) UniProt PMID:33422265 NCBI chrNW_004955416:8,893,249...8,936,351
Ensembl chrNW_004955416:8,893,249...8,936,351 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chrNW_004955460:14,774,545...14,860,783
Ensembl chrNW_004955460:14,774,545...14,802,879 		JBrowse link
glycophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gaa alpha glucosidase involved_in ISO (PMID:12739885) MGI PMID:12739885 NCBI chrNW_004955506:2,764,959...2,783,231
Ensembl chrNW_004955506:2,764,959...2,783,231 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in ISO (PMID:20810658) MGI PMID:20810658 NCBI chrNW_004955413:7,653,396...7,661,835
Ensembl chrNW_004955413:7,653,396...7,661,835 		JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO (PMID:20810658) GO_Central
MGI		 PMID:20810658 NCBI chrNW_004955433:1,036,265...1,038,652 JBrowse link
lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aup1 AUP1 lipid droplet regulating VLDL assembly factor involved_in ISO (PMID:29902443) UniProt PMID:29902443 NCBI chrNW_004955424:11,259,288...11,262,413
Ensembl chrNW_004955424:11,259,432...11,262,269 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:23708524) GO_Central PMID:23708524 NCBI chrNW_004955429:15,103,792...15,167,498 JBrowse link
G Spart spartin involved_in ISO (PMID:37443287), (PMID:38190532) UniProt PMID:37443287 PMID:38190532 NCBI chrNW_004955431:9,758,159...9,786,468
Ensembl chrNW_004955431:9,758,053...9,786,644 		JBrowse link
mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl interactor 2 involved_in ISO (PMID:38081847) UniProt PMID:38081847 NCBI chrNW_004955457:11,451,851...11,562,692
Ensembl chrNW_004955457:11,451,851...11,562,696 		JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO (PMID:21753002)
(PMID:25215947)		 ParkinsonsUK-UCL PMID:21753002 PMID:25215947 NCBI chrNW_004955422:1,455,392...1,644,368
Ensembl chrNW_004955422:1,455,380...1,644,452 		JBrowse link
G Arfip2 ARF interacting protein 2 involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004955414:22,209,515...22,214,353
Ensembl chrNW_004955414:22,209,515...22,214,353 		JBrowse link
G Arhgap26 Rho GTPase activating protein 26 involved_in ISO (PMID:38081847) UniProt PMID:38081847 NCBI chrNW_004955415:10,635,410...11,066,551
Ensembl chrNW_004955415:10,637,036...11,066,942 		JBrowse link
G Atg13 autophagy related 13 involved_in ISO (PMID:21855797) ParkinsonsUK-UCL PMID:21855797 NCBI chrNW_004955422:1,398,646...1,432,440
Ensembl chrNW_004955422:1,398,593...1,432,438 		JBrowse link
G Atg14 autophagy related 14 involved_in ISO (PMID:23878393) ParkinsonsUK-UCL PMID:23878393 NCBI chrNW_004955466:13,898,311...13,972,506
Ensembl chrNW_004955466:13,898,298...13,972,506 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004955542:164,969...192,498
Ensembl chrNW_004955542:166,365...193,006 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004955495:1,739,982...1,746,362
Ensembl chrNW_004955495:1,739,982...1,746,362 		JBrowse link
G Atg7 autophagy related 7 involved_in ISO (PMID:20080761)
(PMID:19279012)		 ParkinsonsUK-UCL PMID:19279012 PMID:20080761 NCBI chrNW_004955429:14,076,976...14,301,034
Ensembl chrNW_004955429:14,076,960...14,304,236 		JBrowse link
G Bcl2l13 BCL2 like 13 acts_upstream_of_or_within ISO (PMID:31266807) MGI PMID:31266807 NCBI chrNW_004955454:5,692,027...5,770,897
Ensembl chrNW_004955454:5,715,991...5,769,443 		JBrowse link
G Becn1 beclin 1 involved_in ISO (PMID:23878393), (PMID:25215947) ParkinsonsUK-UCL PMID:23878393 PMID:25215947 NCBI chrNW_004955451:16,616,595...16,625,731
Ensembl chrNW_004955451:16,616,595...16,625,730 		JBrowse link
G Bnip3 BCL2 interacting protein 3 involved_in ISO (PMID:22505714) FlyBase PMID:22505714 NCBI chrNW_004955477:9,621,812...9,630,406
Ensembl chrNW_004955477:9,621,812...9,638,099 		JBrowse link
G Clec16a C-type lectin domain containing 16A involved_in ISO (PMID:35604110) DisProt PMID:35604110 NCBI chrNW_004955442:7,369,616...7,584,052
Ensembl chrNW_004955442:7,368,952...7,584,703 		JBrowse link
G Ctsk cathepsin K involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004955588:149,036...158,093
Ensembl chrNW_004955588:148,748...158,093 		JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha involved_in ISO (PMID:38340717) UniProt PMID:38340717 NCBI chrNW_004955466:2,838,785...2,855,443
Ensembl chrNW_004955466:2,838,785...2,855,172 		JBrowse link
G Fundc1 FUN14 domain containing 1 involved_in ISO (PMID:34244144) FlyBase PMID:34244144 NCBI chrNW_004955516:3,648,629...3,664,032
Ensembl chrNW_004955516:3,648,629...3,664,032 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) MGI PMID:23707074 NCBI chrNW_004955545:1,682,097...1,689,373
Ensembl chrNW_004955545:1,682,097...1,689,376 		JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004955471:5,052,535...5,649,696
Ensembl chrNW_004955471:5,053,487...5,649,476 		JBrowse link
G Map1lc3b microtubule associated protein 1 light chain 3 beta involved_in ISO (PMID:28017329)
(PMID:19279012)		 UniProt
ParkinsonsUK-UCL		 PMID:19279012 PMID:28017329 NCBI chrNW_004955541:1,852,388...1,868,194 JBrowse link
G Nipsnap1 nipsnap homolog 1 involved_in ISO (PMID:30982665) UniProt PMID:30982665 NCBI chrNW_004955455:3,796,445...3,815,290
Ensembl chrNW_004955455:3,795,413...3,815,289 		JBrowse link
G Nipsnap2 nipsnap homolog 2 involved_in ISO (PMID:30982665) UniProt PMID:30982665 NCBI chrNW_004955456:8,176,171...8,195,576
Ensembl chrNW_004955456:8,176,168...8,195,576 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in ISO (PMID:33406421) ARUK-UCL PMID:33406421 NCBI chrNW_004955475:11,062,258...11,112,252
Ensembl chrNW_004955475:11,062,076...11,114,169 		JBrowse link
G Phb2 prohibitin 2 involved_in ISO (PMID:28017329) UniProt PMID:28017329 NCBI chrNW_004955413:4,557,969...4,563,697
Ensembl chrNW_004955413:4,558,259...4,563,582 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:38081847)
(PMID:33406421)		 UniProt
ARUK-UCL
RGD		 PMID:25154397 PMID:33406421 PMID:38081847 RGD:12904014 NCBI chrNW_004955452:1,171,115...1,186,338
Ensembl chrNW_004955452:1,171,205...1,185,125 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within		 ISO (PMID:23685073), (PMID:28017329)
(PMID:24949970)
PMID:20457763		 UniProt
MGI
ParkinsonsUK-UCL		 PMID:20457763 PMID:23685073 PMID:24949970 PMID:28017329 RGD:10047224 NCBI chrNW_004955439:18,664,230...19,953,358
Ensembl chrNW_004955439:18,664,379...19,951,152 		JBrowse link
G Retreg1 reticulophagy regulator 1 acts_upstream_of_or_within ISO (PMID:31446166) MGI PMID:31446166 NCBI chrNW_004955426:5,574,207...5,688,236
Ensembl chrNW_004955426:5,574,216...5,688,236 		JBrowse link
G Rimoc1 RAB7A interacting MON1-CCZ1 complex subunit 1 involved_in ISO (PMID:34432599) UniProt PMID:34432599 NCBI chrNW_004955426:26,026,284...26,040,311
Ensembl chrNW_004955426:26,026,290...26,040,311 		JBrowse link
G Spata33 spermatogenesis associated 33 involved_in ISO (PMID:33087875) UniProt PMID:33087875 NCBI chrNW_004955541:3,223,552...3,232,837 JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO (PMID:20457763) ParkinsonsUK-UCL PMID:20457763 NCBI chrNW_004955408:757,426...764,989
Ensembl chrNW_004955408:757,426...771,615 		JBrowse link
G Tafazzin tafazzin, phospholipid-lysophospholipid transacylase involved_in ISO (PMID:25919711)
(PMID:33096711)		 UniProt PMID:25919711 PMID:33096711 NCBI chrNW_004955580:915,668...921,703
Ensembl chrNW_004955580:915,188...922,791 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of ISO (PMID:22044588) MGI PMID:22044588 NCBI chrNW_004955413:2,129,719...2,153,873
Ensembl chrNW_004955413:2,129,678...2,154,380 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of ISO (PMID:22044588) MGI PMID:22044588 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO (PMID:21855797) ParkinsonsUK-UCL PMID:21855797 NCBI chrNW_004955482:760,200...777,133
Ensembl chrNW_004955482:761,811...777,133 		JBrowse link
negative regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 involved_in ISO (PMID:31857589) UniProt PMID:31857589 NCBI chrNW_004955543:348,314...378,391
Ensembl chrNW_004955543:348,019...378,071 		JBrowse link
G Lypla1 lysophospholipase 1 involved_in ISO (PMID:37802024) UniProt PMID:37802024 NCBI chrNW_004955454:13,356,851...13,385,110 JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 acts_upstream_of_or_within ISO (PMID:27994061) MGI PMID:27994061 NCBI chrNW_004955451:16,616,595...16,625,731
Ensembl chrNW_004955451:16,616,595...16,625,730 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (PMID:23918802) MGI PMID:23918802 NCBI chrNW_004955437:396,736...411,144
Ensembl chrNW_004955437:396,742...411,144 		JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004955412:26,477,995...26,530,686
Ensembl chrNW_004955412:26,477,301...26,531,354 		JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004955441:4,421,936...4,456,070 JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in ISO (PMID:23916833) ParkinsonsUK-UCL PMID:23916833 NCBI chrNW_004955505:84,324...216,923
Ensembl chrNW_004955505:81,796...216,923 		JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of_or_within ISO (PMID:23695157) MGI PMID:23695157 NCBI chrNW_004955498:6,329,402...6,444,708
Ensembl chrNW_004955498:6,329,275...6,445,169 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISO (PMID:20181828) UniProt PMID:20181828 NCBI chrNW_004955493:6,746,380...6,747,763
Ensembl chrNW_004955493:6,746,380...6,747,763 		JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO (PMID:25484098) GO_Central PMID:25484098 NCBI chrNW_004955467:9,671,133...9,675,434
Ensembl chrNW_004955467:9,671,133...9,675,434 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chrNW_004955452:1,171,115...1,186,338
Ensembl chrNW_004955452:1,171,205...1,185,125 		JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in ISO (PMID:21242315) UniProt PMID:21242315 NCBI chrNW_004955409:29,805,909...29,903,208
Ensembl chrNW_004955409:29,805,909...29,903,208 		JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) UniProt PMID:21242315 NCBI chrNW_004955568:1,559,519...1,587,782
Ensembl chrNW_004955568:1,559,452...1,587,782 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) HGNC PMID:28195531 NCBI chrNW_004955478:11,002,174...11,015,123
Ensembl chrNW_004955478:11,002,174...11,015,123 		JBrowse link
G Tmem39a transmembrane protein 39A involved_in ISO (PMID:31806350) UniProt PMID:31806350 NCBI chrNW_004955427:19,118,631...19,184,315
Ensembl chrNW_004955427:19,133,434...19,184,344 		JBrowse link
negative regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A involved_in ISO (PMID:28223137) UniProt PMID:28223137 NCBI chrNW_004955442:7,369,616...7,584,052
Ensembl chrNW_004955442:7,368,952...7,584,703 		JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO (PMID:25484098) GO_Central PMID:25484098 NCBI chrNW_004955467:9,671,133...9,675,434
Ensembl chrNW_004955467:9,671,133...9,675,434 		JBrowse link
G Rubcn rubicon autophagy regulator involved_in ISO (PMID:21062745) UniProt PMID:21062745 NCBI chrNW_004955420:12,124,193...12,187,154
Ensembl chrNW_004955420:12,123,450...12,187,154 		JBrowse link
G Tmem39a transmembrane protein 39A involved_in ISO (PMID:31806350) UniProt PMID:31806350 NCBI chrNW_004955427:19,118,631...19,184,315
Ensembl chrNW_004955427:19,133,434...19,184,344 		JBrowse link
G Ubqln4 ubiquilin 4 involved_in ISO (PMID:23459205) UniProt PMID:23459205 NCBI chrNW_004955545:2,218,794...2,236,665
Ensembl chrNW_004955545:2,220,548...2,236,646 		JBrowse link
negative regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 acts_upstream_of_or_within ISO (PMID:20705711) MGI PMID:20705711 NCBI chrNW_004955405:43,124,447...43,128,873
Ensembl chrNW_004955405:43,124,510...43,130,979 		JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in ISO (PMID:19640926) ParkinsonsUK-UCL PMID:19640926 NCBI chrNW_004955505:84,324...216,923
Ensembl chrNW_004955505:81,796...216,923 		JBrowse link
G Lzts1 leucine zipper tumor suppressor 1 involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004955403:43,909,722...43,962,965
Ensembl chrNW_004955403:43,909,681...43,962,971 		JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of_or_within ISO (PMID:25327288)
(PMID:16714284), (PMID:23274896)		 MGI PMID:16714284 PMID:23274896 PMID:25327288 NCBI chrNW_004955486:2,487,642...2,599,694
Ensembl chrNW_004955486:2,487,642...2,599,694 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of_or_within ISO (PMID:17468177) MGI PMID:17468177 NCBI chrNW_004955402:11,699,434...11,742,899
Ensembl chrNW_004955402:11,699,434...11,742,899 		JBrowse link
G Nrbp2 nuclear receptor binding protein 2 involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004955454:2,500,360...2,507,372 JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chrNW_004955452:1,171,115...1,186,338
Ensembl chrNW_004955452:1,171,205...1,185,125 		JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 acts_upstream_of_or_within ISO (PMID:24797518) MGI PMID:24797518 NCBI chrNW_004955481:4,776,721...4,785,817
Ensembl chrNW_004955481:4,776,721...4,785,817 		JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 involved_in ISO (PMID:24475161) CACAO PMID:24475161 NCBI chrNW_004955406:19,363,938...19,402,134 JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) HGNC PMID:28195531 NCBI chrNW_004955478:11,002,174...11,015,123
Ensembl chrNW_004955478:11,002,174...11,015,123 		JBrowse link
G Tsc1 TSC complex subunit 1 involved_in ISO PMID:23435171 ParkinsonsUK-UCL PMID:23435171 RGD:10448950 NCBI chrNW_004955513:2,197,037...2,244,992
Ensembl chrNW_004955513:2,197,037...2,244,992 		JBrowse link
G Tsc2 TSC complex subunit 2 ISO RGD PMID:24599401 RGD:11568679 NCBI chrNW_004955442:15,178,356...15,216,978
Ensembl chrNW_004955442:15,178,487...15,216,362 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:22622177) UniProt PMID:22622177 NCBI chrNW_004955506:3,824,598...3,861,919
Ensembl chrNW_004955506:3,824,556...3,862,098 		JBrowse link
negative regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004955442:7,369,616...7,584,052
Ensembl chrNW_004955442:7,368,952...7,584,703 		JBrowse link
G Fbxl4 F-box and leucine rich repeat protein 4 involved_in ISO (PMID:38992176) UniProt PMID:38992176 NCBI chrNW_004955411:24,757,445...24,814,642
Ensembl chrNW_004955411:24,757,445...24,814,643 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chrNW_004955452:1,171,115...1,186,338
Ensembl chrNW_004955452:1,171,205...1,185,125 		JBrowse link
G Pptc7 protein phosphatase targeting COQ7 involved_in ISO (PMID:38992176) UniProt PMID:38992176 NCBI chrNW_004955482:7,445,218...7,484,939
Ensembl chrNW_004955482:7,445,218...7,484,952 		JBrowse link
G Rnf41 ring finger protein 41 acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004955458:3,799,450...3,833,269
Ensembl chrNW_004955458:3,799,450...3,833,263 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within ISO (PMID:22044588) MGI PMID:22044588 NCBI chrNW_004955413:2,129,719...2,153,873
Ensembl chrNW_004955413:2,129,678...2,154,380 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (PMID:22044588) MGI PMID:22044588 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928 		JBrowse link
G Tspo translocator protein involved_in ISO (PMID:25470454) ParkinsonsUK-UCL PMID:25470454 NCBI chrNW_004955413:28,309,105...28,315,075
Ensembl chrNW_004955413:28,308,658...28,315,075 		JBrowse link
G Usp30 ubiquitin specific peptidase 30 ISO RGD PMID:24896179 RGD:13208875 NCBI chrNW_004955455:10,234,779...10,257,959
Ensembl chrNW_004955455:10,192,426...10,257,951 		JBrowse link
negative regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htra2 HtrA serine peptidase 2 involved_in ISO (PMID:24709290) ParkinsonsUK-UCL PMID:24709290 NCBI chrNW_004955424:11,255,756...11,259,170
Ensembl chrNW_004955424:11,255,756...11,259,170 		JBrowse link
G Vps13c vacuolar protein sorting 13 homolog C involved_in ISO (PMID:26942284) ParkinsonsUK-UCL PMID:26942284 NCBI chrNW_004955450:13,016,933...13,178,797
Ensembl chrNW_004955450:13,016,950...13,174,990 		JBrowse link
pexophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acbd5 acyl-CoA binding domain containing 5 involved_in ISO (PMID:24535825) UniProt PMID:24535825 NCBI chrNW_004955429:2,623,042...2,661,182
Ensembl chrNW_004955429:2,621,904...2,659,537 		JBrowse link
G Atm ATM serine/threonine kinase involved_in ISO (PMID:26344566) UniProt PMID:26344566 NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545 		JBrowse link
G Pex2 peroxisomal biogenesis factor 2 involved_in ISO (PMID:26344566), (PMID:27597759) UniProt PMID:26344566 PMID:27597759 NCBI chrNW_004955444:3,811,972...3,830,666
Ensembl chrNW_004955444:3,811,973...3,830,666 		JBrowse link
G Pex5 peroxisomal biogenesis factor 5 involved_in ISO (PMID:26344566) UniProt PMID:26344566 NCBI chrNW_004955413:4,736,189...4,755,559
Ensembl chrNW_004955413:4,736,189...4,755,766 		JBrowse link
G Pjvk pejvakin involved_in ISO (PMID:30936319) UniProt PMID:30936319 NCBI chrNW_004955403:18,386,705...18,393,771
Ensembl chrNW_004955403:18,386,705...18,393,771 		JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO (PMID:26344566) UniProt PMID:26344566 NCBI chrNW_004955408:757,426...764,989
Ensembl chrNW_004955408:757,426...771,615 		JBrowse link
positive regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag3 BAG cochaperone 3 involved_in ISO (PMID:18006506) ARUK-UCL PMID:18006506 NCBI chrNW_004955551:446,322...468,329
Ensembl chrNW_004955551:446,605...469,207 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISO (PMID:22017874) UniProt PMID:22017874 NCBI chrNW_004955597:326,601...397,112 JBrowse link
G Hspb8 heat shock protein family B (small) member 8 involved_in ISO (PMID:18006506) ARUK-UCL PMID:18006506 NCBI chrNW_004955455:12,290,884...12,304,588
Ensembl chrNW_004955455:12,290,587...12,304,656 		JBrowse link
G Htt huntingtin involved_in ISO (PMID:25686248) ParkinsonsUK-UCL PMID:25686248 NCBI chrNW_004955514:1,906,189...2,042,357
Ensembl chrNW_004955514:1,906,502...2,038,889 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in ISO (PMID:31857589) UniProt PMID:31857589 NCBI chrNW_004955422:19,557,498...19,565,044
Ensembl chrNW_004955422:19,557,498...19,565,036 		JBrowse link
G Zdhhc19 zinc finger DHHC-type palmitoyltransferase 19 involved_in ISO (PMID:37802024) UniProt PMID:37802024 NCBI chrNW_004955420:12,432,342...12,442,411
Ensembl chrNW_004955420:12,432,279...12,442,249 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in ISO (PMID:30952800), (PMID:31271352) UniProt PMID:30952800 PMID:31271352 NCBI chrNW_004955422:20,261,749...20,290,879
Ensembl chrNW_004955422:20,271,330...20,291,875 		JBrowse link
G Atg7 autophagy related 7 ISO RGD PMID:33372336 RGD:407571673 NCBI chrNW_004955429:14,076,976...14,301,034
Ensembl chrNW_004955429:14,076,960...14,304,236 		JBrowse link
G Becn1 beclin 1 ISO RGD PMID:25561470 RGD:11561937 NCBI chrNW_004955451:16,616,595...16,625,731
Ensembl chrNW_004955451:16,616,595...16,625,730 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO (PMID:21072319) BHF-UCL PMID:21072319 NCBI chrNW_004955435:12,531,651...12,626,969
Ensembl chrNW_004955435:12,531,642...12,627,874 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:25484098) GO_Central PMID:25484098 NCBI chrNW_004955419:1,121,127...1,154,356
Ensembl chrNW_004955419:1,121,127...1,154,356 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004955429:6,231,135...6,399,672
Ensembl chrNW_004955429:6,336,355...6,399,672 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004955451:13,842,814...13,856,301
Ensembl chrNW_004955451:13,842,814...13,856,302 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004955458:5,315,083...5,327,617
Ensembl chrNW_004955458:5,315,376...5,327,617 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004955440:2,551,015...2,645,938
Ensembl chrNW_004955440:2,550,982...2,646,331 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004955520:3,411,504...3,483,703
Ensembl chrNW_004955520:3,411,770...3,483,413 		JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO (PMID:24056301) UniProt PMID:24056301 NCBI chrNW_004955459:9,533,081...9,574,464
Ensembl chrNW_004955459:9,531,538...9,574,766 		JBrowse link
G Sh3glb1 SH3 domain containing GRB2 like, endophilin B1 involved_in ISO (PMID:21068542) UniProt PMID:21068542 NCBI chrNW_004955423:7,393,186...7,414,199
Ensembl chrNW_004955423:7,393,186...7,423,903 		JBrowse link
G Snx18 sorting nexin 18 involved_in ISO (PMID:29437695) UniProt PMID:29437695 NCBI chrNW_004955446:13,043,821...13,067,933
Ensembl chrNW_004955446:13,043,821...13,067,933 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO (PMID:32513819) UniProt PMID:32513819 NCBI chrNW_004955419:14,567,317...14,645,442
Ensembl chrNW_004955419:14,567,317...14,619,637 		JBrowse link
G Snx4 sorting nexin 4 involved_in ISO (PMID:32513819), (PMID:33468622) UniProt PMID:32513819 PMID:33468622 NCBI chrNW_004955427:24,520,125...24,579,589
Ensembl chrNW_004955427:24,520,125...24,579,589 		JBrowse link
G Snx7 sorting nexin 7 involved_in ISO (PMID:32513819) UniProt PMID:32513819 NCBI chrNW_004955435:3,481,304...3,543,801
Ensembl chrNW_004955435:3,477,496...3,543,886 		JBrowse link
G Trim32 tripartite motif containing 32 involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chrNW_004955419:11,151,751...11,168,046
Ensembl chrNW_004955419:11,151,751...11,168,041 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO RGD PMID:23448468 RGD:13208863 NCBI chrNW_004955482:760,200...777,133
Ensembl chrNW_004955482:761,811...777,133 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO (PMID:31271352) UniProt PMID:31271352 NCBI chrNW_004955543:597,796...604,163
Ensembl chrNW_004955543:597,814...603,963 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:31271352) UniProt PMID:31271352 NCBI chrNW_004955478:4,309,975...4,341,107
Ensembl chrNW_004955478:4,309,880...4,343,934 		JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 involved_in ISO (PMID:23708524) GO_Central PMID:23708524 NCBI chrNW_004955415:5,515,157...5,517,198
Ensembl chrNW_004955415:5,515,697...5,516,980 		JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in ISO (PMID:25771791) GO_Central PMID:25771791 NCBI chrNW_004955451:12,443,262...12,469,608
Ensembl chrNW_004955451:12,443,796...12,469,857 		JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004955442:7,369,616...7,584,052
Ensembl chrNW_004955442:7,368,952...7,584,703 		JBrowse link
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in ISO (PMID:26468287) ParkinsonsUK-UCL PMID:26468287 NCBI chrNW_004955420:26,019,621...26,076,846
Ensembl chrNW_004955420:26,019,514...26,074,492 		JBrowse link
G Irgm immunity related GTPase M involved_in ISO (PMID:16888103) UniProt PMID:16888103 NCBI chrNW_004955408:2,338,510...2,344,566 JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) HGNC PMID:28195531 NCBI chrNW_004955478:11,002,174...11,015,123
Ensembl chrNW_004955478:11,002,174...11,015,123 		JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) UniProt PMID:23023224 NCBI chrNW_004955405:43,091,632...43,115,016
Ensembl chrNW_004955405:43,091,633...43,115,016 		JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl1 ELAV like RNA binding protein 1 ISO RGD PMID:33372336 RGD:407571673 NCBI chrNW_004955563:1,283,424...1,315,283
Ensembl chrNW_004955563:1,283,421...1,315,283 		JBrowse link
positive regulation of autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Znrf1 zinc and ring finger 1 involved_in ISO (PMID:38360932) FlyBase PMID:38360932 NCBI chrNW_004955484:2,468,392...2,566,539
Ensembl chrNW_004955484:2,468,392...2,566,539 		JBrowse link
G Znrf2 zinc and ring finger 2 involved_in ISO (PMID:38360932) FlyBase PMID:38360932 NCBI chrNW_004955410:31,550,519...31,628,084 JBrowse link
positive regulation of lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 involved_in ISO (PMID:23708524) GO_Central PMID:23708524 NCBI chrNW_004955415:5,515,157...5,517,198
Ensembl chrNW_004955415:5,515,697...5,516,980 		JBrowse link
G Htt huntingtin involved_in ISO (PMID:25686248) ParkinsonsUK-UCL PMID:25686248 NCBI chrNW_004955514:1,906,189...2,042,357
Ensembl chrNW_004955514:1,906,502...2,038,889 		JBrowse link
G Sesn2 sestrin 2 acts_upstream_of_or_within ISO (PMID:22958918) MGI PMID:22958918 NCBI chrNW_004955452:7,392,644...7,417,204
Ensembl chrNW_004955452:7,393,007...7,417,304 		JBrowse link
G Sptlc1 serine palmitoyltransferase long chain base subunit 1 acts_upstream_of_or_within ISO (PMID:25332431) MGI PMID:25332431 NCBI chrNW_004955515:57,711...161,012
Ensembl chrNW_004955515:57,711...161,611 		JBrowse link
G Sptlc2 serine palmitoyltransferase long chain base subunit 2 acts_upstream_of_or_within ISO (PMID:25332431) MGI PMID:25332431 NCBI chrNW_004955438:1,385,431...1,491,534
Ensembl chrNW_004955438:1,385,431...1,491,578 		JBrowse link
positive regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 acts_upstream_of_or_within ISO (PMID:19273585) MGI PMID:19273585 NCBI chrNW_004955477:9,621,812...9,630,406
Ensembl chrNW_004955477:9,621,812...9,638,099 		JBrowse link
G Bnip3l BCL2 interacting protein 3 like acts_upstream_of_or_within ISO (PMID:19273585) MGI PMID:19273585 NCBI chrNW_004955403:49,122,408...49,144,162
Ensembl chrNW_004955403:49,122,408...49,144,998 		JBrowse link
G C9orf72 C9orf72-SMCR8 complex subunit involved_in ISO (PMID:27103069), (PMID:27334615) HGNC PMID:27103069 PMID:27334615 NCBI chrNW_004955472:7,299,092...7,337,591
Ensembl chrNW_004955472:7,310,788...7,337,735 		JBrowse link
G Dcn decorin acts_upstream_of_or_within ISO (PMID:23798385) MGI PMID:23798385 NCBI chrNW_004955405:28,335,493...28,371,912
Ensembl chrNW_004955405:28,332,545...28,372,323 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO (PMID:20453062) MGI PMID:20453062 NCBI chrNW_004955436:14,925,452...14,982,357
Ensembl chrNW_004955436:14,926,123...14,983,180 		JBrowse link
G Gnai3 G protein subunit alpha i3 involved_in ISO (PMID:12642577) UniProt PMID:12642577 NCBI chrNW_004955435:12,965,006...13,005,614
Ensembl chrNW_004955435:12,965,006...13,005,614 		JBrowse link
G Gpsm1 G protein signaling modulator 1 involved_in ISO (PMID:12642577) UniProt PMID:12642577 NCBI chrNW_004955513:4,363,534...4,387,356
Ensembl chrNW_004955513:4,361,139...4,387,356 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:19273585) MGI PMID:19273585 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497 		JBrowse link
G Hmox1 heme oxygenase 1 acts_upstream_of_or_within ISO (PMID:20705711) MGI PMID:20705711 NCBI chrNW_004955405:43,124,447...43,128,873
Ensembl chrNW_004955405:43,124,510...43,130,979 		JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma involved_in ISO (PMID:23778976) ParkinsonsUK-UCL PMID:23778976 NCBI chrNW_004955580:1,053,823...1,069,802
Ensembl chrNW_004955580:1,053,823...1,069,802 		JBrowse link
G Il4 interleukin 4 involved_in ISO (PMID:26416964) UniProt PMID:26416964 NCBI chrNW_004955408:4,058,052...4,065,999 JBrowse link
G Kdr kinase insert domain receptor acts_upstream_of_or_within ISO (PMID:23798385) MGI PMID:23798385 NCBI chrNW_004955447:15,810,816...15,851,702
Ensembl chrNW_004955447:15,810,815...15,853,583 		JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004955408:9,002,443...9,080,938
Ensembl chrNW_004955408:9,002,458...9,080,938 		JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 involved_in ISO (PMID:23778976) ParkinsonsUK-UCL PMID:23778976 NCBI chrNW_004955411:17,177,335...17,229,957
Ensembl chrNW_004955411:17,177,335...17,229,957 		JBrowse link
G Pafah1b2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004955412:18,471,621...18,494,082
Ensembl chrNW_004955412:18,474,199...18,494,082 		JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO (PMID:17476689) MGI PMID:17476689 NCBI chrNW_004955543:444,314...449,201
Ensembl chrNW_004955543:444,314...449,201 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:20871098) ParkinsonsUK-UCL PMID:20871098 NCBI chrNW_004955452:1,171,115...1,186,338
Ensembl chrNW_004955452:1,171,205...1,185,125 		JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in ISO (PMID:23357852) UniProt PMID:23357852 NCBI chrNW_004955402:3,102,709...3,109,701
Ensembl chrNW_004955402:3,103,708...3,110,701 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in ISO (PMID:26416964) UniProt PMID:26416964 NCBI chrNW_004955453:15,243,125...15,259,086
Ensembl chrNW_004955453:15,242,954...15,257,976 		JBrowse link
G Scoc short coiled-coil protein involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004955428:3,404,372...3,435,653
Ensembl chrNW_004955428:3,404,326...3,435,759 		JBrowse link
G Sesn2 sestrin 2 involved_in ISO (PMID:23274085) UniProt PMID:23274085 NCBI chrNW_004955452:7,392,644...7,417,204
Ensembl chrNW_004955452:7,393,007...7,417,304 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:18296641)
(PMID:18296641), (PMID:21189328)		 UniProt PMID:18296641 PMID:21189328 NCBI chrNW_004955425:20,280,725...20,307,663
Ensembl chrNW_004955425:20,279,963...20,307,663 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISO (PMID:30568238), (PMID:30842662), (PMID:37535724) UniProt PMID:30568238 PMID:30842662 PMID:37535724 NCBI chrNW_004955418:1,091,022...1,097,064
Ensembl chrNW_004955418:1,083,613...1,100,448 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004955468:95,997...123,005
Ensembl chrNW_004955468:95,181...123,147 		JBrowse link
G Tbk1 TANK binding kinase 1 involved_in ISO (PMID:27103069) HGNC PMID:27103069 NCBI chrNW_004955458:11,210,120...11,263,632
Ensembl chrNW_004955458:11,211,398...11,263,867 		JBrowse link
G Trim13 tripartite motif containing 13 involved_in ISO (PMID:22178386) UniProt PMID:22178386 NCBI chrNW_004955431:3,324,331...3,395,724
Ensembl chrNW_004955431:3,324,331...3,395,724 		JBrowse link
G Tsc1 TSC complex subunit 1 ISO RGD PMID:23435171 RGD:10448950 NCBI chrNW_004955513:2,197,037...2,244,992
Ensembl chrNW_004955513:2,197,037...2,244,992 		JBrowse link
G Tsc2 TSC complex subunit 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:23778976)
(PMID:20453062)		 ParkinsonsUK-UCL
MGI		 PMID:20453062 PMID:23778976 NCBI chrNW_004955442:15,178,356...15,216,978
Ensembl chrNW_004955442:15,178,487...15,216,362 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004955462:2,358,842...2,435,644
Ensembl chrNW_004955462:2,358,842...2,435,628 		JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO (PMID:30217973) UniProt PMID:30217973 NCBI chrNW_004955422:1,455,392...1,644,368
Ensembl chrNW_004955422:1,455,380...1,644,452 		JBrowse link
G Atg7 autophagy related 7 ISO RGD PMID:37042059 RGD:407532700 NCBI chrNW_004955429:14,076,976...14,301,034
Ensembl chrNW_004955429:14,076,960...14,304,236 		JBrowse link
G Cers1 ceramide synthase 1 involved_in ISO (PMID:22922758) UniProt PMID:22922758 NCBI chrNW_004955524:2,788,672...2,798,068
Ensembl chrNW_004955524:2,788,653...2,796,370 		JBrowse link
G Dele1 DAP3 binding cell death enhancer 1 involved_in ISO (PMID:38340717) UniProt PMID:38340717 NCBI chrNW_004955415:11,851,023...11,869,905
Ensembl chrNW_004955415:11,854,526...11,869,777 		JBrowse link
G Eif2ak1 eukaryotic translation initiation factor 2 alpha kinase 1 involved_in ISO (PMID:38340717) UniProt PMID:38340717 NCBI chrNW_004955460:13,723,674...13,754,545
Ensembl chrNW_004955460:13,723,777...13,754,150 		JBrowse link
G Fbxo7 F-box protein 7 involved_in ISO PMID:26310625
(PMID:26310625)		 ParkinsonsUK-UCL PMID:26310625 RGD:11536096 NCBI chrNW_004955405:41,429,421...41,449,670
Ensembl chrNW_004955405:41,433,082...41,453,909 		JBrowse link
G Htt huntingtin involved_in ISO (PMID:25686248) ParkinsonsUK-UCL PMID:25686248 NCBI chrNW_004955514:1,906,189...2,042,357
Ensembl chrNW_004955514:1,906,502...2,038,889 		JBrowse link
G Irgm immunity related GTPase M involved_in ISO (PMID:21102437), (PMID:32939830)
(PMID:33510463)		 UniProt PMID:21102437 PMID:32939830 PMID:33510463 NCBI chrNW_004955408:2,338,510...2,344,566 JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 involved_in ISO (PMID:31919280) UniProt PMID:31919280 NCBI chrNW_004955433:8,746,213...8,780,119
Ensembl chrNW_004955433:8,746,004...8,782,710 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:26310625) RGD
ParkinsonsUK-UCL		 PMID:26310625 PMID:28608965 RGD:13432560 NCBI chrNW_004955439:18,664,230...19,953,358
Ensembl chrNW_004955439:18,664,379...19,951,152 		JBrowse link
G Slc25a4 solute carrier family 25 member 4 involved_in ISO (PMID:31618756) UniProt PMID:31618756 NCBI chrNW_004955403:23,878,329...23,882,322
Ensembl chrNW_004955403:23,878,329...23,882,322 		JBrowse link
G Slc25a5 solute carrier family 25 member 5 involved_in ISO (PMID:31618756) UniProt PMID:31618756 NCBI chrNW_004955534:497,518...500,309
Ensembl chrNW_004955534:496,933...510,934 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO PMID:29934347 UniProt PMID:29934347 RGD:405650300 NCBI chrNW_004955442:16,521,130...16,523,733
Ensembl chrNW_004955442:16,521,130...16,523,468 		JBrowse link
G Ube2a ubiquitin conjugating enzyme E2 A involved_in ISO (PMID:23685073) UniProt PMID:23685073 NCBI chrNW_004955534:411,602...485,964
Ensembl chrNW_004955534:409,947...421,888 		JBrowse link
G Vps13d vacuolar protein sorting 13 homolog D involved_in ISO (PMID:29307555) UniProt PMID:29307555 NCBI chrNW_004955486:1,515,630...1,772,107
Ensembl chrNW_004955486:1,513,712...1,767,956 		JBrowse link
positive regulation of reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in ISO (PMID:36543799)
(PMID:32851973)		 UniProt PMID:32851973 PMID:36543799 NCBI chrNW_004955451:13,160,811...13,170,012
Ensembl chrNW_004955451:13,120,761...13,170,073 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:36543799) UniProt PMID:36543799 NCBI chrNW_004955415:14,085,404...14,098,220
Ensembl chrNW_004955415:14,085,404...14,098,856 		JBrowse link
G Ufl1 UFM1 specific ligase 1 involved_in ISO (PMID:36543799) UniProt PMID:36543799 NCBI chrNW_004955411:22,548,139...22,577,287
Ensembl chrNW_004955411:22,548,219...22,580,903 		JBrowse link
positive regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5if1 ATP synthase inhibitory factor subunit 1 involved_in ISO (PMID:24005319) ParkinsonsUK-UCL PMID:24005319 NCBI chrNW_004955452:7,372,917...7,375,072
Ensembl chrNW_004955452:7,373,001...7,375,856 		JBrowse link
G Cdc37 cell division cycle 37, HSP90 cochaperone involved_in ISO (PMID:21855797) ParkinsonsUK-UCL PMID:21855797 NCBI chrNW_004955495:1,642,467...1,651,288
Ensembl chrNW_004955495:1,641,236...1,651,288 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) ARUK-UCL PMID:23707074 NCBI chrNW_004955545:1,682,097...1,689,373
Ensembl chrNW_004955545:1,682,097...1,689,376 		JBrowse link
G Hdac6 histone deacetylase 6 involved_in ISO (PMID:20457763) ParkinsonsUK-UCL PMID:20457763 NCBI chrNW_004955543:348,314...378,391
Ensembl chrNW_004955543:348,019...378,071 		JBrowse link
G Hk2 hexokinase 2 involved_in ISO (PMID:23962723) ParkinsonsUK-UCL PMID:23962723 NCBI chrNW_004955424:10,897,528...10,966,025
Ensembl chrNW_004955424:10,897,485...10,966,025 		JBrowse link
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in ISO (PMID:30217973) CACAO PMID:30217973 NCBI chrNW_004955475:550,643...671,771
Ensembl chrNW_004955475:551,159...671,747 		JBrowse link
G Mul1 mitochondrial E3 ubiquitin protein ligase 1 involved_in ISO (PMID:24709290) ParkinsonsUK-UCL PMID:24709290 NCBI chrNW_004955452:1,059,168...1,066,096
Ensembl chrNW_004955452:1,058,930...1,066,096 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:20871098) ParkinsonsUK-UCL PMID:20871098 NCBI chrNW_004955452:1,171,115...1,186,338
Ensembl chrNW_004955452:1,171,205...1,185,125 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:20457763)
(PMID:20871098), (PMID:23212910)		 ParkinsonsUK-UCL PMID:20457763 PMID:20871098 PMID:23212910 NCBI chrNW_004955439:18,664,230...19,953,358
Ensembl chrNW_004955439:18,664,379...19,951,152 		JBrowse link
G Tomm7 translocase of outer mitochondrial membrane 7 involved_in ISO (PMID:24270810) ParkinsonsUK-UCL PMID:24270810 NCBI chrNW_004955410:25,157,860...25,166,898
Ensembl chrNW_004955410:25,157,860...25,166,898 		JBrowse link
G Vdac1 voltage dependent anion channel 1 involved_in ISO (PMID:32047033) UniProt PMID:32047033 NCBI chrNW_004955408:5,260,444...5,275,972
Ensembl chrNW_004955408:5,260,353...5,275,990 		JBrowse link
positive regulation of xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irgm immunity related GTPase M involved_in ISO (PMID:25891078) UniProt PMID:25891078 NCBI chrNW_004955408:2,338,510...2,344,566 JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:23245322) GO_Central PMID:23245322 NCBI chrNW_004955419:1,121,127...1,154,356
Ensembl chrNW_004955419:1,121,127...1,154,356 		JBrowse link
G Mapk3 mitogen-activated protein kinase 3 acts_upstream_of_or_within ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004955493:6,870,699...6,876,836
Ensembl chrNW_004955493:6,869,668...6,879,152 		JBrowse link
G Nod1 nucleotide binding oligomerization domain containing 1 acts_upstream_of_or_within ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004955410:31,681,191...31,725,173
Ensembl chrNW_004955410:31,681,077...31,725,173 		JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 acts_upstream_of_or_within ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004955433:8,746,213...8,780,119
Ensembl chrNW_004955433:8,746,004...8,782,710 		JBrowse link
G Optn optineurin involved_in ISO (PMID:21617041) ParkinsonsUK-UCL PMID:21617041 NCBI chrNW_004955462:1,098,118...1,150,291
Ensembl chrNW_004955462:1,107,510...1,151,269 		JBrowse link
G Ripk2 receptor interacting serine/threonine kinase 2 acts_upstream_of_or_within ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004955417:6,669,675...6,698,142
Ensembl chrNW_004955417:6,669,675...6,702,228 		JBrowse link
G Rnf31 ring finger protein 31 involved_in ISO (PMID:28481331) UniProt PMID:28481331 NCBI chrNW_004955409:36,240,008...36,252,166
Ensembl chrNW_004955409:36,240,008...36,252,166 		JBrowse link
G Tbk1 TANK binding kinase 1 involved_in ISO (PMID:21617041) ParkinsonsUK-UCL PMID:21617041 NCBI chrNW_004955458:11,210,120...11,263,632
Ensembl chrNW_004955458:11,211,398...11,263,867 		JBrowse link
G Tlr2 toll like receptor 2 acts_upstream_of_or_within ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004955471:8,011,710...8,019,063
Ensembl chrNW_004955471:8,014,910...8,017,258 		JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004955453:2,884,497...2,917,581
Ensembl chrNW_004955453:2,880,928...2,917,581 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) MGI PMID:23918802 NCBI chrNW_004955411:31,501,191...31,646,407
Ensembl chrNW_004955411:31,522,420...31,646,827 		JBrowse link
G Irgm immunity related GTPase M involved_in ISO (PMID:28389568) UniProt PMID:28389568 NCBI chrNW_004955408:2,338,510...2,344,566 JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004955460:10,090,343...10,132,724
Ensembl chrNW_004955460:10,090,349...10,130,384 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip2 ARF interacting protein 2 involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004955414:22,209,515...22,214,353
Ensembl chrNW_004955414:22,209,515...22,214,353 		JBrowse link
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004955453:2,884,497...2,917,581
Ensembl chrNW_004955453:2,880,928...2,917,581 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004955542:164,969...192,498
Ensembl chrNW_004955542:166,365...193,006 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004955495:1,739,982...1,746,362
Ensembl chrNW_004955495:1,739,982...1,746,362 		JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004955471:5,052,535...5,649,696
Ensembl chrNW_004955471:5,053,487...5,649,476 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within ISO (PMID:23455425) MGI PMID:23455425 NCBI chrNW_004955486:1,937,873...1,962,577
Ensembl chrNW_004955486:1,937,802...1,962,772 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) MGI PMID:23455425 NCBI chrNW_004955538:3,559,738...3,616,862
Ensembl chrNW_004955538:3,559,724...3,619,649 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004955402:28,081,150...28,195,305
Ensembl chrNW_004955402:28,081,098...28,196,252 		JBrowse link
G Stx17 syntaxin 17 acts_upstream_of_or_within ISO (PMID:23455425) MGI PMID:23455425 NCBI chrNW_004955419:25,674,771...25,741,357
Ensembl chrNW_004955419:25,674,771...25,741,355 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:28561066)
(PMID:24954904)		 UniProt
MGI		 PMID:24954904 PMID:28561066 NCBI chrNW_004955460:10,090,343...10,132,724
Ensembl chrNW_004955460:10,090,349...10,130,384 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf72 C9orf72-SMCR8 complex subunit involved_in ISO (PMID:27334615) UniProt PMID:27334615 NCBI chrNW_004955472:7,299,092...7,337,591
Ensembl chrNW_004955472:7,310,788...7,337,735 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chrNW_004955455:2,969,113...3,008,004
Ensembl chrNW_004955455:2,969,270...3,003,173 		JBrowse link
G Efnb1 ephrin B1 acts_upstream_of_positive_effect ISO (PMID:33280498) UniProt PMID:33280498 NCBI chrNW_004955475:8,360,504...8,372,431
Ensembl chrNW_004955475:8,360,465...8,373,578 		JBrowse link
G Ephb2 EPH receptor B2 acts_upstream_of_positive_effect ISO (PMID:33280498) UniProt PMID:33280498 NCBI chrNW_004955452:2,844,713...2,986,790
Ensembl chrNW_004955452:2,844,713...2,980,445 		JBrowse link
G Ift20 intraflagellar transport 20 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chrNW_004955481:4,799,548...4,807,751
Ensembl chrNW_004955481:4,799,548...4,807,751 		JBrowse link
G Ift88 intraflagellar transport 88 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chrNW_004955497:1,338,959...1,454,788
Ensembl chrNW_004955497:1,338,904...1,455,122 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO (PMID:23524951) UniProt PMID:23524951 NCBI chrNW_004955486:2,487,642...2,599,694
Ensembl chrNW_004955486:2,487,642...2,599,694 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004955457:6,749,226...6,841,855
Ensembl chrNW_004955457:6,748,534...6,842,489 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in ISO (PMID:20545908) UniProt PMID:20545908 NCBI chrNW_004955422:19,039,741...19,047,088
Ensembl chrNW_004955422:19,039,632...19,047,088 		JBrowse link
G Rnf186 ring finger protein 186 acts_upstream_of_positive_effect ISO (PMID:33280498) UniProt PMID:33280498 NCBI chrNW_004955452:433,413...450,261 JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within ISO (PMID:23093945) MGI PMID:23093945 NCBI chrNW_004955437:643,133...645,528
Ensembl chrNW_004955437:643,170...645,528 		JBrowse link
G Tbc1d14 TBC1 domain family member 14 involved_in ISO (PMID:22613832) BHF-UCL PMID:22613832 NCBI chrNW_004955514:3,485,975...3,553,840
Ensembl chrNW_004955514:3,485,841...3,567,377 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:20529957) UniProt PMID:20529957 NCBI chrNW_004955475:3,260,209...3,263,586
Ensembl chrNW_004955475:3,260,503...3,262,380 		JBrowse link
regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in ISO (PMID:22342342) ComplexPortal PMID:22342342 NCBI chrNW_004955408:35,607,541...35,620,878
Ensembl chrNW_004955408:35,607,541...35,620,878 		JBrowse link
G Atg5 autophagy related 5 involved_in ISO (PMID:22342342) ComplexPortal PMID:22342342 NCBI chrNW_004955411:31,501,191...31,646,407
Ensembl chrNW_004955411:31,522,420...31,646,827 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:26450516) UniProt PMID:26450516 NCBI chrNW_004955493:6,696,520...6,707,849
Ensembl chrNW_004955493:6,696,241...6,707,849 		JBrowse link
G Tbc1d25 TBC1 domain family member 25 involved_in ISO (PMID:21383079) UniProt PMID:21383079 NCBI chrNW_004955543:127,314...154,235
Ensembl chrNW_004955543:127,162...154,235 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISO (PMID:22342342) ComplexPortal PMID:22342342 NCBI chrNW_004955460:14,106,711...14,137,983
Ensembl chrNW_004955460:14,106,711...14,138,033 		JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:22186024) RGD
ParkinsonsUK-UCL		 PMID:22186024 RGD:13442482 NCBI chrNW_004955527:1,805,854...1,823,623
Ensembl chrNW_004955527:1,806,009...1,823,344 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:25878248) UniProt PMID:25878248 NCBI chrNW_004955493:6,696,520...6,707,849
Ensembl chrNW_004955493:6,696,241...6,707,849 		JBrowse link
G Dnajc16 DnaJ heat shock protein family (Hsp40) member C16 involved_in ISO (PMID:32492081) UniProt PMID:32492081 NCBI chrNW_004955527:2,576,861...2,609,925
Ensembl chrNW_004955527:2,577,157...2,609,997 		JBrowse link
regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in ISO (PMID:10625637) ComplexPortal PMID:10625637 NCBI chrNW_004955466:13,898,311...13,972,506
Ensembl chrNW_004955466:13,898,298...13,972,506 		JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:22198378) ParkinsonsUK-UCL PMID:22198378 NCBI chrNW_004955527:1,805,854...1,823,623
Ensembl chrNW_004955527:1,806,009...1,823,344 		JBrowse link
G Atp6v0a1 ATPase H+ transporting V0 subunit a1 involved_in ISO (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chrNW_004955451:16,396,287...16,442,596
Ensembl chrNW_004955451:16,396,287...16,444,932 		JBrowse link
G Becn1 beclin 1 involved_in ISO (PMID:10625637) ComplexPortal PMID:10625637 NCBI chrNW_004955451:16,616,595...16,625,731
Ensembl chrNW_004955451:16,616,595...16,625,730 		JBrowse link
G Hdac6 histone deacetylase 6 involved_in ISO (PMID:16192271) BHF-UCL PMID:16192271 NCBI chrNW_004955543:348,314...378,391
Ensembl chrNW_004955543:348,019...378,071 		JBrowse link
G Mtmr8 myotubularin related protein 8 involved_in ISO (PMID:32915229) FlyBase PMID:32915229 NCBI chrNW_004955475:4,358,264...4,391,349 JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in ISO (PMID:10625637) ComplexPortal PMID:10625637 NCBI chrNW_004955402:28,081,150...28,195,305
Ensembl chrNW_004955402:28,081,098...28,196,252 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 involved_in ISO (PMID:10625637) ComplexPortal PMID:10625637 NCBI chrNW_004955501:7,604,934...7,681,947
Ensembl chrNW_004955501:7,604,501...7,681,947 		JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in ISO (PMID:23332761) UniProt PMID:23332761 NCBI chrNW_004955464:2,996,608...3,062,197
Ensembl chrNW_004955464:3,003,837...3,062,197 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:20529957) UniProt PMID:20529957 NCBI chrNW_004955475:3,260,209...3,263,586
Ensembl chrNW_004955475:3,260,503...3,262,380 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO (PMID:20921139) UniProt PMID:20921139 NCBI chrNW_004955482:760,200...777,133
Ensembl chrNW_004955482:761,811...777,133 		JBrowse link
regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy10 adenylate cyclase 10 ISO RGD PMID:31172217 RGD:329403053 NCBI chrNW_004955462:9,196,984...9,278,850
Ensembl chrNW_004955462:9,207,314...9,278,621 		JBrowse link
G Bnip3l BCL2 interacting protein 3 like involved_in ISO (PMID:20200478) ParkinsonsUK-UCL PMID:20200478 NCBI chrNW_004955403:49,122,408...49,144,162
Ensembl chrNW_004955403:49,122,408...49,144,998 		JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004955433:15,677,788...15,718,894
Ensembl chrNW_004955433:15,674,116...15,718,894 		JBrowse link
G Cttn cortactin involved_in ISO (PMID:20457763) ParkinsonsUK-UCL PMID:20457763 NCBI chrNW_004955422:15,838,036...15,874,067
Ensembl chrNW_004955422:15,835,145...15,874,108 		JBrowse link
G Dnm1l dynamin 1 like involved_in ISO (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chrNW_004955505:3,025,742...3,081,491
Ensembl chrNW_004955505:3,023,018...3,081,680 		JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004955471:6,852,459...7,026,590
Ensembl chrNW_004955471:6,848,101...6,955,881 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 involved_in ISO (PMID:28381481), (PMID:31908024) DisProt PMID:28381481 PMID:31908024 NCBI chrNW_004955524:3,037,825...3,044,296
Ensembl chrNW_004955524:3,036,953...3,044,296 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004955457:7,282,403...7,288,918
Ensembl chrNW_004955457:7,282,403...7,288,918 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004955555:668,641...676,351
Ensembl chrNW_004955555:667,973...676,351 		JBrowse link
G Parl presenilin associated rhomboid like involved_in ISO (PMID:21355049) ParkinsonsUK-UCL PMID:21355049 NCBI chrNW_004955420:23,549,125...23,581,782
Ensembl chrNW_004955420:23,548,672...23,582,137 		JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004955577:171,425...183,669
Ensembl chrNW_004955577:171,425...186,046 		JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004955413:27,271,717...27,326,655
Ensembl chrNW_004955413:27,271,953...27,326,759 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004955506:3,824,598...3,861,919
Ensembl chrNW_004955506:3,824,556...3,862,098 		JBrowse link
G Vdac1 voltage dependent anion channel 1 involved_in ISO (PMID:25470454) ParkinsonsUK-UCL PMID:25470454 NCBI chrNW_004955408:5,260,444...5,275,972
Ensembl chrNW_004955408:5,260,353...5,275,990 		JBrowse link
reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 involved_in ISO (PMID:22505714) FlyBase PMID:22505714 NCBI chrNW_004955477:9,621,812...9,630,406
Ensembl chrNW_004955477:9,621,812...9,638,099 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:32160526) UniProt PMID:32160526 NCBI chrNW_004955415:14,085,404...14,098,220
Ensembl chrNW_004955415:14,085,404...14,098,856 		JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 acts_upstream_of_or_within ISO (PMID:31006538) MGI PMID:31006538 NCBI chrNW_004955454:12,201,566...12,257,383
Ensembl chrNW_004955454:12,200,750...12,257,389 		JBrowse link
G Retreg1 reticulophagy regulator 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:26040720)
(PMID:34338405)
(PMID:26040720), (PMID:31930741)		 GO_Central
MGI		 PMID:26040720 PMID:31930741 PMID:34338405 NCBI chrNW_004955426:5,574,207...5,688,236
Ensembl chrNW_004955426:5,574,216...5,688,236 		JBrowse link
G Retreg2 reticulophagy regulator family member 2 acts_upstream_of_or_within ISO (PMID:34338405) MGI PMID:34338405 NCBI chrNW_004955453:14,258,523...14,263,573
Ensembl chrNW_004955453:14,258,523...14,263,573 		JBrowse link
G Retreg3 reticulophagy regulator family member 3 acts_upstream_of_or_within
involved_in		 ISO (PMID:34338405)
(PMID:33826365)		 MGI
UniProt		 PMID:33826365 PMID:34338405 NCBI chrNW_004955451:16,468,845...16,486,773
Ensembl chrNW_004955451:16,468,845...16,486,773 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISO (PMID:29056340) UniProt PMID:29056340 NCBI chrNW_004955418:1,091,022...1,097,064
Ensembl chrNW_004955418:1,083,613...1,100,448 		JBrowse link
G Tex264 testis expressed 264, ER-phagy receptor acts_upstream_of_or_within
involved_in		 ISO (PMID:31006538)
(PMID:31006537), (PMID:31006538)		 MGI
GO_Central		 PMID:31006537 PMID:31006538 NCBI chrNW_004955532:3,278,214...3,306,045
Ensembl chrNW_004955532:3,280,372...3,305,760 		JBrowse link
G Uba5 ubiquitin like modifier activating enzyme 5 involved_in ISO (PMID:32160526) UniProt PMID:32160526 NCBI chrNW_004955501:5,841,516...5,864,304
Ensembl chrNW_004955501:5,841,606...5,870,953 		JBrowse link
G Ufc1 ubiquitin-fold modifier conjugating enzyme 1 involved_in ISO (PMID:32160526) UniProt PMID:32160526 NCBI chrNW_004955468:12,919,031...12,922,740
Ensembl chrNW_004955468:12,919,031...12,922,740 		JBrowse link
G Ufl1 UFM1 specific ligase 1 involved_in ISO (PMID:32160526) UniProt PMID:32160526 NCBI chrNW_004955411:22,548,139...22,577,287
Ensembl chrNW_004955411:22,548,219...22,580,903 		JBrowse link
G Ufm1 ubiquitin fold modifier 1 involved_in ISO (PMID:32160526) UniProt PMID:32160526 NCBI chrNW_004955431:7,860,706...7,872,972
Ensembl chrNW_004955431:7,860,706...7,872,972 		JBrowse link
ribophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Armc3 armadillo repeat containing 3 involved_in ISO (PMID:34428398) UniProt PMID:34428398 NCBI chrNW_004955429:5,949,180...6,050,690
Ensembl chrNW_004955429:5,947,940...6,051,038 		JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irgq immunity related GTPase Q involved_in ISO (PMID:39481378) UniProt PMID:39481378 NCBI chrNW_004955555:1,328,187...1,335,018
Ensembl chrNW_004955555:1,329,812...1,334,317 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chrNW_004955460:14,774,545...14,860,783
Ensembl chrNW_004955460:14,774,545...14,802,879 		JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO (PMID:20810658)
(PMID:27358407)		 MGI PMID:20810658 PMID:27358407 NCBI chrNW_004955433:1,036,265...1,038,652 JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) UniProt PMID:23023224 NCBI chrNW_004955405:43,091,632...43,115,016
Ensembl chrNW_004955405:43,091,633...43,115,016 		JBrowse link
type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 involved_in ISO (PMID:20457763) ParkinsonsUK-UCL PMID:20457763 NCBI chrNW_004955543:348,314...378,391
Ensembl chrNW_004955543:348,019...378,071 		JBrowse link
G Mfn2 mitofusin 2 involved_in ISO (PMID:23620051) ParkinsonsUK-UCL PMID:23620051 NCBI chrNW_004955486:1,937,873...1,962,577
Ensembl chrNW_004955486:1,937,802...1,962,772 		JBrowse link
G Optn optineurin involved_in ISO (PMID:25294927) ParkinsonsUK-UCL PMID:25294927 NCBI chrNW_004955462:1,098,118...1,150,291
Ensembl chrNW_004955462:1,107,510...1,151,269 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:19029340) ParkinsonsUK-UCL PMID:19029340 NCBI chrNW_004955439:18,664,230...19,953,358
Ensembl chrNW_004955439:18,664,379...19,951,152 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chrNW_004955460:14,774,545...14,860,783
Ensembl chrNW_004955460:14,774,545...14,802,879 		JBrowse link
xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004955453:2,884,497...2,917,581
Ensembl chrNW_004955453:2,880,928...2,917,581 		JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in ISO (PMID:23022382), (PMID:25771791) DisProt PMID:23022382 PMID:25771791 NCBI chrNW_004955451:12,443,262...12,469,608
Ensembl chrNW_004955451:12,443,796...12,469,857 		JBrowse link
G Lgals8 galectin 8 involved_in ISO (PMID:22246324), (PMID:28077878) GO_Central PMID:22246324 PMID:28077878 NCBI chrNW_004955492:3,673,233...3,693,777
Ensembl chrNW_004955492:3,673,233...3,693,776 		JBrowse link
G Mapk3 mitogen-activated protein kinase 3 acts_upstream_of ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004955493:6,870,699...6,876,836
Ensembl chrNW_004955493:6,869,668...6,879,152 		JBrowse link
G Nod1 nucleotide binding oligomerization domain containing 1 acts_upstream_of ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004955410:31,681,191...31,725,173
Ensembl chrNW_004955410:31,681,077...31,725,173 		JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 acts_upstream_of ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004955433:8,746,213...8,780,119
Ensembl chrNW_004955433:8,746,004...8,782,710 		JBrowse link
G Ripk2 receptor interacting serine/threonine kinase 2 acts_upstream_of ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004955417:6,669,675...6,698,142
Ensembl chrNW_004955417:6,669,675...6,702,228 		JBrowse link
G Rnf213 ring finger protein 213 involved_in ISO (PMID:34012115) UniProt PMID:34012115 NCBI chrNW_004955506:2,498,339...2,598,363
Ensembl chrNW_004955506:2,499,770...2,596,989 		JBrowse link
G Tlr2 toll like receptor 2 acts_upstream_of ISO (PMID:22033934) MGI PMID:22033934 NCBI chrNW_004955471:8,011,710...8,019,063
Ensembl chrNW_004955471:8,014,910...8,017,258 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004955460:10,090,343...10,132,724
Ensembl chrNW_004955460:10,090,349...10,130,384 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12563
    cellular process 12002
      process utilizing autophagic mechanism 460
        autophagy 460
          macroautophagy 289
            aggrephagy + 14
            amphisome-lysosome fusion 0
            autophagosome maturation + 57
            autophagosome organization + 107
            autophagosome-endosome fusion 1
            autophagosome-lysosome fusion + 12
            glycophagy 3
            lipophagy + 8
            lysophagy 0
            mitophagy + 76
            negative regulation of macroautophagy + 37
            nucleophagy + 0
            pexophagy 6
            positive regulation of macroautophagy + 94
            proteaphagy 0
            regulation of macroautophagy + 147
            reticulophagy + 13
            ribophagy 1
            xenophagy + 15
Path 2
Term Annotations click to browse term
  biological_process 12563
    cellular process 12002
      metabolic process 7932
        catabolic process 1982
          autophagy 460
            macroautophagy 289
              aggrephagy + 14
              amphisome-lysosome fusion 0
              autophagosome maturation + 57
              autophagosome organization + 107
              autophagosome-endosome fusion 1
              autophagosome-lysosome fusion + 12
              glycophagy 3
              lipophagy + 8
              lysophagy 0
              mitophagy + 76
              negative regulation of macroautophagy + 37
              nucleophagy + 0
              pexophagy 6
              positive regulation of macroautophagy + 94
              proteaphagy 0
              regulation of macroautophagy + 147
              reticulophagy + 13
              ribophagy 1
              xenophagy + 15
paths to the root