ONTOLOGY REPORT - ANNOTATIONS


Term:inclusion body
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Accession:GO:0016234 term browser browse the term
Definition:A discrete intracellular part formed of aggregated molecules such as proteins or other biopolymers.
Synonyms:narrow_synonym: neuronal cytoplasmic inclusion
 related_synonym: cellular inclusion
 xref: NIF_Subcellular:sao120573470;   Wikipedia:Inclusion_bodies


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inclusion body term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase JBrowse link 2 219,788,234 219,843,189 RGD:1624291
RGD:1600115
G Bag5 BCL2-associated athanogene 5 JBrowse link 6 136,180,640 136,185,651 RGD:1624291
RGD:8553807
G Bag5l1 BCL2-associated athanogene 5-like 1 JBrowse link 6 136,274,351 136,279,414 RGD:8553807
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 JBrowse link 9 82,436,453 82,444,669 RGD:1624291
G Gys1 glycogen synthase 1 JBrowse link 1 101,427,195 101,447,092 RGD:1624291
RGD:1600115
G Hap1 huntingtin-associated protein 1 JBrowse link 10 88,257,975 88,266,210 RGD:1624291
RGD:1600115
G Hdac6 histone deacetylase 6 JBrowse link X 15,295,372 15,316,673 RGD:1624291
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 JBrowse link 9 17,817,791 17,823,163 RGD:5686867
G Hspa1a heat shock protein family A (Hsp70) member 1A JBrowse link 20 4,875,834 4,881,751 RGD:1624291
G Hspa1b heat shock protein family A (Hsp70) member 1B JBrowse link 20 4,877,638 4,880,112 RGD:1624291
G Htt huntingtin JBrowse link 14 81,105,139 81,254,637 RGD:1624291
RGD:1600115
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 7 132,857,311 133,018,549 RGD:1624291
RGD:1600115
G Miox myo-inositol oxygenase JBrowse link 7 130,308,707 130,311,205 RGD:1600115
RGD:1624291
G Mt3 metallothionein 3 JBrowse link 19 11,324,708 11,326,112 RGD:1624291
RGD:1600115
G Prnp prion protein JBrowse link 3 124,515,917 124,531,320 RGD:1624291
RGD:1600115
G Psmc4 proteasome 26S subunit, ATPase 4 JBrowse link 1 84,978,220 84,986,536 RGD:7242199
G Psmc5 proteasome 26S subunit, ATPase 5 JBrowse link 10 94,445,877 94,451,811 RGD:7242199
G Psmc6 proteasome 26S subunit, ATPase 6 JBrowse link 15 19,667,453 19,688,916 RGD:7242199
G Rad50 RAD50 double strand break repair protein JBrowse link 10 39,002,130 39,054,042 RGD:2300253
G Snca synuclein alpha JBrowse link 4 90,782,412 90,883,236 RGD:1624291
RGD:1600115
G Sncb synuclein, beta JBrowse link 17 10,384,472 10,392,776 RGD:1624291
RGD:1600115
G Sqstm1 sequestosome 1 JBrowse link 10 35,704,728 35,716,316 RGD:1624291
G Wdfy3 WD repeat and FYVE domain containing 3 JBrowse link 14 9,169,409 9,384,835 RGD:1624291
RGD:1600115
G Zp2 zona pellucida glycoprotein 2 JBrowse link 1 189,899,906 189,911,650 RGD:1624291
aggresome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cabin1 calcineurin binding protein 1 JBrowse link 20 13,836,032 13,963,003 RGD:1624291
RGD:1600115
G Ccz1b CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated JBrowse link 12 12,638,849 12,662,371 RGD:1624291
G Clu clusterin JBrowse link 15 42,626,612 42,665,858 RGD:1582417
G Dbf4b DBF4 zinc finger B JBrowse link 10 90,710,468 90,723,313 RGD:1624291
G Dvl2 dishevelled segment polarity protein 2 JBrowse link 10 56,609,810 56,619,269 RGD:1624291
RGD:1600115
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 JBrowse link 4 140,886,644 140,918,654 RGD:1624291
RGD:1600115
G Eef2 eukaryotic translation elongation factor 2 JBrowse link 7 11,401,501 11,406,771 RGD:1624291
RGD:1600115
G Eps15 epidermal growth factor receptor pathway substrate 15 JBrowse link 5 128,923,809 129,022,268 RGD:1624291
RGD:1600115
G Fgr FGR proto-oncogene, Src family tyrosine kinase JBrowse link 5 151,172,189 151,199,746 RGD:1624291
RGD:1600115
G Hdac6 histone deacetylase 6 JBrowse link X 15,295,372 15,316,673 RGD:1624291
G Hoxc9 homeobox C9 JBrowse link 7 144,592,462 144,598,807 RGD:1624291
RGD:1600115
G Hoxd3 homeo box D3 JBrowse link 3 61,650,569 61,670,285 RGD:1624291
RGD:1600115
G Hspa1a heat shock protein family A (Hsp70) member 1A JBrowse link 20 4,875,834 4,881,751 RGD:1624291
G Hspa1b heat shock protein family A (Hsp70) member 1B JBrowse link 20 4,877,638 4,880,112 RGD:1624291
G Hspb7 heat shock protein family B (small) member 7 JBrowse link 5 159,968,077 159,971,563 RGD:1624291
RGD:1600115
G Klf8 Kruppel-like factor 8 JBrowse link X 18,836,902 19,032,012 RGD:1624291
RGD:1600115
G Klhl14 kelch-like family member 14 JBrowse link 18 12,526,627 12,640,381 RGD:1624291
RGD:1600115
G Pick1 protein interacting with PRKCA 1 JBrowse link 7 120,465,472 120,484,824 RGD:1624291
RGD:1600115
G Pold1 DNA polymerase delta 1, catalytic subunit JBrowse link 1 100,538,066 100,554,105 RGD:1624291
RGD:1600115
G Prdm16 PR/SET domain 16 JBrowse link 5 171,662,277 171,711,561 RGD:1624291
RGD:1600115
G Prkcq protein kinase C, theta JBrowse link 17 70,971,915 71,105,286 RGD:1624291
RGD:1600115
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:1624291
RGD:1600115
G Psen1 presenilin 1 JBrowse link 6 107,169,514 107,221,000 RGD:1624291
RGD:1600115
G Rangap1 RAN GTPase activating protein 1 JBrowse link 7 122,939,266 122,967,178 RGD:1624291
RGD:1600115
G Rnf32 ring finger protein 32 JBrowse link 4 2,053,283 2,113,917 RGD:1624291
RGD:1600115
G Sergef secretion regulating guanine nucleotide exchange factor JBrowse link 1 102,461,327 102,664,978 RGD:1624291
RGD:1600115
G Sfmbt2 Scm-like with four mbt domains 2 JBrowse link 17 71,719,012 71,904,303 RGD:1624291
RGD:1600115
G Slfn13 schlafen family member 13 JBrowse link 10 70,326,157 70,343,024 RGD:1624291
G Sqstm1 sequestosome 1 JBrowse link 10 35,704,728 35,716,316 RGD:1624291
RGD:13792537
G Stradb STE20 related adaptor beta JBrowse link 9 65,763,437 65,782,513 RGD:1624291
RGD:1600115
G Syne2 spectrin repeat containing nuclear envelope protein 2 JBrowse link 6 98,884,269 99,153,551 RGD:1624291
G Tbk1 TANK-binding kinase 1 JBrowse link 7 63,655,247 63,687,978 RGD:1624291
RGD:1600115
G Tdp2 tyrosyl-DNA phosphodiesterase 2 JBrowse link 17 42,229,667 42,241,025 RGD:1624291
RGD:1600115
G Trim37 tripartite motif-containing 37 JBrowse link 10 74,436,165 74,568,636 RGD:1624291
RGD:1600115
G Trim50 tripartite motif-containing 50 JBrowse link 12 24,348,426 24,365,467 RGD:1624291
RGD:1600115
G Trim66 tripartite motif-containing 66 JBrowse link 1 174,062,176 174,132,732 RGD:1624291
G Ubd ubiquitin D JBrowse link 20 1,876,175 1,878,126 RGD:1600115
RGD:13792537
RGD:1624291
G Ubqln1 ubiquilin 1 JBrowse link 17 6,840,441 6,878,842 RGD:1600115
RGD:1624291
G Ucma upper zone of growth plate and cartilage matrix associated JBrowse link 17 77,252,099 77,262,301 RGD:1624291
G Urb2 URB2 ribosome biogenesis homolog JBrowse link 19 56,802,843 56,827,017 RGD:1624291
RGD:1600115
G Xrn2 5'-3' exoribonuclease 2 JBrowse link 3 141,224,858 141,298,272 RGD:1624291
RGD:1600115
G Zdhhc17 zinc finger, DHHC-type containing 17 JBrowse link 7 53,651,529 53,715,007 RGD:1624291
RGD:1600115
G Zfp161 zinc finger protein 161 JBrowse link 9 117,739,067 117,744,273 RGD:1624291
RGD:1600115
classical Lewy body term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbxo7 F-box protein 7 JBrowse link 7 23,815,246 23,843,505 RGD:1624291
RGD:1600115
glial cytoplasmic inclusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbxo7 F-box protein 7 JBrowse link 7 23,815,246 23,843,505 RGD:1624291
RGD:1600115
Lewy body term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arih1 ariadne RBR E3 ubiquitin protein ligase 1 JBrowse link 8 64,166,359 64,268,555 RGD:1624291
RGD:1600115
G Gpx1 glutathione peroxidase 1 JBrowse link 8 117,117,430 117,118,528 RGD:1624291
RGD:1600115
G Sqstm1 sequestosome 1 JBrowse link 10 35,704,728 35,716,316 RGD:13210572
Lewy body core term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atf4 activating transcription factor 4 JBrowse link 7 121,480,723 121,482,781 RGD:1624291
RGD:1600115
G Fbxo7 F-box protein 7 JBrowse link 7 23,815,246 23,843,505 RGD:1624291
RGD:1600115
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 JBrowse link 19 11,046,905 11,057,440 RGD:1624291
RGD:1600115
Lewy body corona term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbxo7 F-box protein 7 JBrowse link 7 23,815,246 23,843,505 RGD:1624291
RGD:1600115
neurofibrillary tangle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clu clusterin JBrowse link 15 42,626,612 42,665,858 RGD:1600115
RGD:1624291
G Mapt microtubule-associated protein tau JBrowse link 10 92,289,002 92,386,517 RGD:1600115
RGD:1624291
G Nefh neurofilament heavy JBrowse link 14 85,181,572 85,191,557 RGD:1624291
G Nefm neurofilament medium JBrowse link 15 44,855,307 44,860,604 RGD:1624291
RGD:1600115
G Picalm phosphatidylinositol binding clathrin assembly protein JBrowse link 1 154,377,229 154,458,966 RGD:1624291
RGD:1600115
nuclear inclusion body term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atxn1 ataxin 1 JBrowse link 17 19,160,986 19,533,814 RGD:1624291
RGD:1600115
G Atxn3 ataxin 3 JBrowse link 6 125,817,420 125,853,461 RGD:1624291
RGD:1600115
G Mnda myeloid cell nuclear differentiation antigen JBrowse link 13 92,073,664 92,091,335 RGD:1624291
G Nbn nibrin JBrowse link 5 29,622,347 29,656,877 RGD:1600115
RGD:1624291
G Nup153 nucleoporin 153 JBrowse link 17 18,358,712 18,411,368 RGD:8553300
RGD:1624291
RGD:1600115
G Nup98 nucleoporin 98 JBrowse link 1 167,213,866 167,308,851 RGD:8553300
RGD:1624291
G Nxf1 nuclear RNA export factor 1 JBrowse link 1 224,957,535 224,970,728 RGD:1624291
RGD:1600115
G Pabpn1 poly(A) binding protein, nuclear 1 JBrowse link 15 33,555,640 33,560,251 RGD:9686377
RGD:1624291
G Rad18 RAD18 E3 ubiquitin protein ligase JBrowse link 4 144,537,329 144,620,606 RGD:1624291
RGD:1600115
G Ranbp2 RAN binding protein 2 JBrowse link 20
20
28,027,054
28,365,538
28,076,664
28,375,676
RGD:1624291
RGD:1600115
G Slf1 SMC5-SMC6 complex localization factor 1 JBrowse link 2 4,095,126 4,195,819 RGD:1624291
RGD:1600115
G Stub1 STIP1 homology and U-box containing protein 1 JBrowse link 10 15,197,754 15,200,035 RGD:1624291
RGD:1600115
G Tpr translocated promoter region, nuclear basket protein JBrowse link 13 67,611,685 67,672,833 RGD:8553300
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18315
    cell part 16047
      intracellular part 12952
        inclusion body 85
          Bunina body 0
          Lewy body + 6
          Lewy body-like hyaline inclusion 0
          PHA granule 0
          Pick body 0
          aggresome 43
          fibrillary inclusion 0
          glial cytoplasmic inclusion 1
          hyaline inclusion 0
          laminated body + 0
          nematosome 0
          neurofibrillary tangle 5
          nuclear inclusion body 13
          skein-like inclusion 0
Path 2
Term Annotations click to browse term
  cellular_component 18315
    cell 16117
      cell part 16047
        intracellular 12952
          intracellular part 12952
            inclusion body 85
              Bunina body 0
              Lewy body + 6
              Lewy body-like hyaline inclusion 0
              PHA granule 0
              Pick body 0
              aggresome 43
              fibrillary inclusion 0
              glial cytoplasmic inclusion 1
              hyaline inclusion 0
              laminated body + 0
              nematosome 0
              neurofibrillary tangle 5
              nuclear inclusion body 13
              skein-like inclusion 0
paths to the root