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ONTOLOGY REPORT - ANNOTATIONS


Term:endosomal transport
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Accession:GO:0016197 term browser browse the term
Definition:The directed movement of substances mediated by an endosome, a membrane-bounded organelle that carries materials enclosed in the lumen or located in the endosomal membrane.
Synonyms:exact_synonym: endosome localisation
 related_synonym: endosome localization;   endosome transport
 alt_id: GO:0032439


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endosomal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 ISO (PMID:14747463) BHF-UCL PMID:14747463 NCBI chrNW_004955419:21,553,863...21,681,626
Ensembl chrNW_004955419:21,553,835...21,681,619
JBrowse link
G Agap2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 ISO (PMID:12388557) MGI PMID:12388557 NCBI chrNW_004955458:5,436,544...5,448,201
Ensembl chrNW_004955458:5,436,630...5,448,057
JBrowse link
G Alms1 ALMS1 centrosome and basal body associated protein ISO (PMID:22693585) MGI PMID:22693585 NCBI chrNW_004955424:12,130,496...12,258,684
Ensembl chrNW_004955424:12,130,607...12,258,522
JBrowse link
G Als2 alsin Rho guanine nucleotide exchange factor ALS2 ISO (MGI:MGI:3611988|PMID:16321985)
(MGI:MGI:3652645|PMID:16769894)
MGI PMID:16321985, PMID:16769894 MGI:MGI:3611988, MGI:MGI:3652645 NCBI chrNW_004955403:22,449...104,577
Ensembl chrNW_004955403:22,449...104,948
JBrowse link
G Ankfy1 ankyrin repeat and FYVE domain containing 1 ISO (PMID:24102721) UniProtKB PMID:24102721 NCBI chrNW_004955467:12,644,070...12,734,546
Ensembl chrNW_004955467:12,644,098...12,730,711
JBrowse link
G Ap5b1 adaptor related protein complex 5 subunit beta 1 ISO (PMID:22022230) UniProtKB PMID:22022230 NCBI chrNW_004955422:19,544,255...19,547,212
Ensembl chrNW_004955422:19,544,344...19,547,429
JBrowse link
G Ap5m1 adaptor related protein complex 5 subunit mu 1 ISO (PMID:22022230) UniProtKB PMID:22022230 NCBI chrNW_004955466:11,191,511...11,216,274
Ensembl chrNW_004955466:11,191,511...11,209,388
JBrowse link
G Ap5s1 adaptor related protein complex 5 subunit sigma 1 ISO (PMID:22022230) UniProtKB PMID:22022230 NCBI chrNW_004955415:14,665,450...14,669,456
Ensembl chrNW_004955415:14,664,849...14,672,478
JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 ISO (PMID:22022230) UniProtKB PMID:22022230 NCBI chrNW_004955460:10,997,554...11,009,435
Ensembl chrNW_004955460:10,996,796...11,009,525
JBrowse link
G Arhgap1 Rho GTPase activating protein 1 ISO (PMID:16380373) CAFA PMID:16380373 NCBI chrNW_004955422:1,378,426...1,395,439
Ensembl chrNW_004955422:1,378,426...1,396,899
JBrowse link
G Arl8b ADP ribosylation factor like GTPase 8B ISO (MGI:MGI:5609900|PMID:24841562) MGI PMID:24841562 MGI:MGI:5609900 NCBI chrNW_004955421:8,231,337...8,276,907
Ensembl chrNW_004955421:8,231,582...8,276,907
JBrowse link
G Coro1c coronin 1C ISO (PMID:30220460) UniProt PMID:30220460 NCBI chrNW_004955455:9,905,243...9,952,504
Ensembl chrNW_004955455:9,901,702...9,953,098
JBrowse link
G Dpy30 dpy-30 histone methyltransferase complex regulatory subunit ISO (PMID:19651892) UniProtKB PMID:19651892 NCBI chrNW_004955441:440,047...450,906
Ensembl chrNW_004955441:437,564...450,906
JBrowse link
G Ehd1 EH domain containing 1 ISO (MGI:MGI:2135811|PMID:11389441) MGI PMID:11389441 MGI:MGI:2135811 NCBI chrNW_004955422:20,302,409...20,324,591
Ensembl chrNW_004955422:20,302,655...20,324,591
JBrowse link
G Htt huntingtin ISO (MGI:MGI:3619161|PMID:11092755) MGI PMID:11092755 MGI:MGI:3619161 NCBI chrNW_004955514:1,906,189...2,042,357
Ensembl chrNW_004955514:1,906,502...2,038,889
JBrowse link
G Kiaa1109 KIAA1109 ortholog ISO (PMID:30906834) UniProt PMID:30906834 NCBI chrNW_004955428:18,224,987...18,424,425
Ensembl chrNW_004955428:18,224,987...18,424,425
JBrowse link
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 ISO (MGI:MGI:4887551|PMID:19177150) UniProtKB PMID:19177150 MGI:MGI:4887551 NCBI chrNW_004955414:19,228,615...19,235,523
Ensembl chrNW_004955414:19,228,615...19,247,765
JBrowse link
G Lrp2 LDL receptor related protein 2 ISO RGD PMID:9039057 RGD:1641882 NCBI chrNW_004955449:5,155,109...5,314,886
Ensembl chrNW_004955449:5,160,946...5,314,948
JBrowse link
G Myo5b myosin VB ISO (PMID:21206382) UniProtKB PMID:21206382 NCBI chrNW_004955402:34,892,652...35,247,431 JBrowse link
G Nsg1 neuronal vesicle trafficking associated 1 ISO RGD PMID:18299352 RGD:9850091 NCBI chrNW_004955514:5,273,810...5,294,925
Ensembl chrNW_004955514:5,273,810...5,295,710
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein ISO (PMID:16262731) BHF-UCL PMID:16262731 NCBI chrNW_004955414:6,871,220...6,970,569
Ensembl chrNW_004955414:6,871,520...6,969,208
JBrowse link
G Rab10 RAB10, member RAS oncogene family ISO (PMID:16641372) UniProtKB PMID:16641372 NCBI chrNW_004955469:8,057,235...8,138,983
Ensembl chrNW_004955469:8,057,235...8,138,983
JBrowse link
G Rab13 RAB13, member RAS oncogene family ISO (PMID:18779367) UniProtKB PMID:18779367 NCBI chrNW_004955545:590,021...594,191 JBrowse link
G Rab35 RAB35, member RAS oncogene family ISO (PMID:16950109), (PMID:21951725) UniProtKB PMID:16950109, PMID:21951725 NCBI chrNW_004955455:11,484,557...11,502,630
Ensembl chrNW_004955455:11,484,557...11,502,630
JBrowse link
G Snap25 synaptosome associated protein 25 ISO RGD PMID:16481393 RGD:1581071 NCBI chrNW_004955415:20,133,361...20,218,840
Ensembl chrNW_004955415:20,133,201...20,219,023
JBrowse link
G Snx1 sorting nexin 1 ISO RGD PMID:11110793 RGD:68866 NCBI chrNW_004955450:11,266,712...11,306,014
Ensembl chrNW_004955450:11,266,712...11,305,930
JBrowse link
G Snx18 sorting nexin 18 ISO (PMID:22718350) UniProtKB PMID:22718350 NCBI chrNW_004955446:13,043,821...13,067,933
Ensembl chrNW_004955446:13,043,821...13,067,933
JBrowse link
G Snx27 sorting nexin 27 ISO PMID:17828261
(MGI:MGI:4948187|PMID:21300787)
(PMID:21300787)
UniProt
MGI
UniProtKB
PMID:17828261, PMID:21300787 MGI:MGI:4948187, RGD:8554502 NCBI chrNW_004955589:719,892...799,367
Ensembl chrNW_004955589:719,898...799,366
JBrowse link
G Snx33 sorting nexin 33 ISO (PMID:22718350) UniProtKB PMID:22718350 NCBI chrNW_004955450:2,669,993...2,682,503
Ensembl chrNW_004955450:2,669,993...2,682,503
JBrowse link
G Snx9 sorting nexin 9 ISO (PMID:22718350) UniProtKB PMID:22718350 NCBI chrNW_004955439:4,422,385...4,503,408
Ensembl chrNW_004955439:4,421,297...4,503,393
JBrowse link
G Tmcc1 transmembrane and coiled-coil domain family 1 ISO (PMID:30220460) UniProt PMID:30220460 NCBI chrNW_004955429:17,589,221...17,726,639
Ensembl chrNW_004955429:17,545,534...17,726,977
JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A ISO (PMID:10637304), (PMID:11559748) UniProtKB PMID:10637304, PMID:11559748 NCBI chrNW_004955484:7,368,938...7,375,964 JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B ISO (PMID:11563910) MGI PMID:11563910 NCBI chrNW_004955402:47,154,350...47,183,979
Ensembl chrNW_004955402:47,154,007...47,184,021
JBrowse link
G Was WASP actin nucleation promoting factor ISO (MGI:MGI:2387810|PMID:12147689) MGI PMID:12147689 MGI:MGI:2387810 NCBI chrNW_004955543:243,618...253,489
Ensembl chrNW_004955543:247,631...253,274
JBrowse link
G Washc4 WASH complex subunit 4 ISO (PMID:20923837)
(MGI:MGI:4415646|PMID:19922875)
MGI
UniProtKB
PMID:19922875, PMID:20923837 MGI:MGI:4415646 NCBI chrNW_004955405:39,451,423...39,499,295
Ensembl chrNW_004955405:39,451,404...39,499,295
JBrowse link
G Zfyve16 zinc finger FYVE-type containing 16 ISO (PMID:11546807) UniProtKB PMID:11546807 NCBI chrNW_004955418:29,353,276...29,403,336 JBrowse link
early endosome to Golgi transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ehd3 EH domain containing 3 ISO (PMID:19139087) UniProtKB PMID:19139087 NCBI chrNW_004955469:12,953,800...12,984,296
Ensembl chrNW_004955469:12,953,645...12,984,430
JBrowse link
G Lman1 lectin, mannose binding 1 NOT ISO (PMID:18287528) UniProtKB PMID:18287528 NCBI chrNW_004955402:43,465,556...43,495,789
Ensembl chrNW_004955402:43,464,722...43,496,048
JBrowse link
G Rab6a RAB6A, member RAS oncogene family ISO (PMID:17562788) UniProtKB PMID:17562788 NCBI chrNW_004955414:17,758,071...17,806,727
Ensembl chrNW_004955414:17,758,071...17,806,727
JBrowse link
G Rbsn rabenosyn, RAB effector ISO (PMID:19139087) UniProtKB PMID:19139087 NCBI chrNW_004955429:17,444,031...17,468,024
Ensembl chrNW_004955429:17,444,622...17,468,050
JBrowse link
G Snx1 sorting nexin 1 ISO (PMID:15498486) UniProtKB PMID:15498486 NCBI chrNW_004955450:11,266,712...11,306,014
Ensembl chrNW_004955450:11,266,712...11,305,930
JBrowse link
G Snx8 sorting nexin 8 ISO (PMID:19782049) UniProtKB PMID:19782049 NCBI chrNW_004955460:9,689,654...9,743,891
Ensembl chrNW_004955460:9,689,654...9,744,000
JBrowse link
G Stx5 syntaxin 5 ISO (PMID:17389686) UniProtKB PMID:17389686 NCBI chrNW_004955599:414,338...438,581
Ensembl chrNW_004955599:414,392...438,581
JBrowse link
G Surf4 surfeit 4 NOT ISO (PMID:18287528) UniProtKB PMID:18287528 NCBI chrNW_004955513:2,715,638...2,719,537
Ensembl chrNW_004955513:2,714,321...2,720,073
JBrowse link
G Tmed9 transmembrane p24 trafficking protein 9 NOT ISO (PMID:18287528) UniProtKB PMID:18287528 NCBI chrNW_004955408:29,830,125...29,834,408
Ensembl chrNW_004955408:29,829,503...29,834,408
JBrowse link
endocytic recycling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acap2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 ISO PMID:23572513 UniProt PMID:23572513 RGD:8554201 NCBI chrNW_004955420:13,649,482...13,777,353
Ensembl chrNW_004955420:13,650,215...13,773,022
JBrowse link
G Arf6 ADP ribosylation factor 6 ISO PMID:26446845
(PMID:10036235)
UniProt
UniProtKB
PMID:10036235, PMID:26446845 RGD:11554955 NCBI chrNW_004955409:12,814,814...12,818,142
Ensembl chrNW_004955409:12,817,496...12,818,023
JBrowse link
G Arl4c ADP ribosylation factor like GTPase 4C ISO (PMID:19409876) UniProtKB PMID:19409876 NCBI chrNW_004955453:1,799,917...1,803,498
Ensembl chrNW_004955453:1,799,917...1,801,405
JBrowse link
G Ccdc22 coiled-coil domain containing 22 ISO (PMID:28892079) UniProt PMID:28892079 NCBI chrNW_004955543:719,185...731,788
Ensembl chrNW_004955543:718,996...733,753
JBrowse link
G Ccdc93 coiled-coil domain containing 93 ISO (PMID:28892079) UniProt PMID:28892079 NCBI chrNW_004955459:11,668,605...11,748,327
Ensembl chrNW_004955459:11,668,605...11,748,327
JBrowse link
G Cmtm6 CKLF like MARVEL transmembrane domain containing 6 ISO (PMID:28813417) UniProtKB PMID:28813417 NCBI chrNW_004955430:23,845,977...23,866,408
Ensembl chrNW_004955430:23,845,977...23,866,780
JBrowse link
G Dennd1a DENN domain containing 1A ISO (MGI:MGI:5751677|PMID:20159556) UniProtKB PMID:20159556 MGI:MGI:5751677 NCBI chrNW_004955419:4,120,095...4,605,002
Ensembl chrNW_004955419:4,146,456...4,608,425
JBrowse link
G Dennd1b DENN domain containing 1B ISO (MGI:MGI:5751612|PMID:26774822) UniProtKB PMID:26774822 MGI:MGI:5751612 NCBI chrNW_004955406:34,021,508...34,241,735
Ensembl chrNW_004955406:34,027,046...34,241,737
JBrowse link
G Ehd1 EH domain containing 1 ISO (PMID:15020713)
(PMID:17233914)
UniProtKB
UniProt
PMID:15020713, PMID:17233914 NCBI chrNW_004955422:20,302,409...20,324,591
Ensembl chrNW_004955422:20,302,655...20,324,591
JBrowse link
G Ehd2 EH domain containing 2 ISO (PMID:17233914) UniProt PMID:17233914 NCBI chrNW_004955574:1,490,877...1,503,651
Ensembl chrNW_004955574:1,490,877...1,503,943
JBrowse link
G Ehd3 EH domain containing 3 ISO (PMID:17233914) UniProtKB PMID:17233914 NCBI chrNW_004955469:12,953,800...12,984,296
Ensembl chrNW_004955469:12,953,645...12,984,430
JBrowse link
G Ehd4 EH domain containing 4 ISO (PMID:17233914) UniProt PMID:17233914 NCBI chrNW_004955416:8,686,709...8,758,096
Ensembl chrNW_004955416:8,686,709...8,739,400
JBrowse link
G Eipr1 EARP complex and GARP complex interacting protein 1 ISO PMID:3172165 UniProt PMID:3172165 RGD:25671404 NCBI chrNW_004955487:3,865,469...3,959,750
Ensembl chrNW_004955487:3,865,640...3,959,801
JBrowse link
G Epg5 ectopic P-granules autophagy protein 5 homolog ISO (MGI:MGI:5488852|PMID:23479740) MGI PMID:23479740 MGI:MGI:5488852 NCBI chrNW_004955402:31,422,848...31,532,189
Ensembl chrNW_004955402:31,422,848...31,532,289
JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 ISO RGD PMID:21832070 RGD:9685531 NCBI chrNW_004955464:7,569,570...7,688,098
Ensembl chrNW_004955464:7,569,566...7,688,098
JBrowse link
G Fcgr2b Fc fragment of IgG receptor IIb ISO RGD PMID:17680646 RGD:9588617 NCBI chrNW_004955462:14,639,396...14,653,801 JBrowse link
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 ISO PMID:26446845 UniProt PMID:26446845 RGD:11554955 NCBI chrNW_004955553:2,103,694...2,124,748
Ensembl chrNW_004955553:2,108,379...2,124,748
JBrowse link
G Kiaa1109 KIAA1109 ortholog ISO (PMID:30906834) UniProt PMID:30906834 NCBI chrNW_004955428:18,224,987...18,424,425
Ensembl chrNW_004955428:18,224,987...18,424,425
JBrowse link
G Lmtk2 lemur tyrosine kinase 2 ISO (PMID:18029400) UniProtKB PMID:18029400 NCBI chrNW_004955460:14,012,047...14,101,969
Ensembl chrNW_004955460:14,012,363...14,098,542
JBrowse link
G Micall2 MICAL like 2 ISO (MGI:MGI:5508599|PMID:18094055)
(MGI:MGI:3656449|PMID:16525024)
UniProtKB
MGI
PMID:16525024, PMID:18094055 MGI:MGI:3656449, MGI:MGI:5508599 NCBI chrNW_004955460:9,085,695...9,105,236
Ensembl chrNW_004955460:9,082,795...9,105,338
JBrowse link
G Ptpn23 protein tyrosine phosphatase non-receptor type 23 ISO (PMID:24821423) FlyBase PMID:24821423 NCBI chrNW_004955420:24,869,737...24,897,196
Ensembl chrNW_004955420:24,869,894...24,897,102
JBrowse link
G Rab11fip3 RAB11 family interacting protein 3 ISO (PMID:17394487) UniProtKB PMID:17394487 NCBI chrNW_004955442:16,678,136...16,760,663
Ensembl chrNW_004955442:16,674,867...16,736,921
JBrowse link
G Rab13 RAB13, member RAS oncogene family ISO (PMID:15528189)
(MGI:MGI:5508273|PMID:15528189)
(PMID:18094055)
UniProtKB PMID:15528189, PMID:18094055 MGI:MGI:5508273 NCBI chrNW_004955545:590,021...594,191 JBrowse link
G Rab14 RAB14, member RAS oncogene family ISO (PMID:22595670) UniProtKB PMID:22595670 NCBI chrNW_004955419:6,790,110...6,812,870
Ensembl chrNW_004955419:6,790,707...6,812,870
JBrowse link
G Rab17 RAB17, member RAS oncogene family ISO (MGI:MGI:5486576|PMID:9490718) UniProtKB PMID:9490718 MGI:MGI:5486576 NCBI chrNW_004955542:2,751,953...2,759,661 JBrowse link
G Rab8a RAB8A, member RAS oncogene family ISO (PMID:18094055) UniProtKB PMID:18094055 NCBI chrNW_004955524:1,403,811...1,416,005
Ensembl chrNW_004955524:1,403,811...1,416,005
JBrowse link
G Slc18a2 solute carrier family 18 member A2 ISO RGD PMID:20534840 RGD:5130935 NCBI chrNW_004955431:21,949,553...21,979,679
Ensembl chrNW_004955431:21,949,576...21,979,679
JBrowse link
G Snf8 SNF8 subunit of ESCRT-II ISO (PMID:17714434) UniProtKB PMID:17714434 NCBI chrNW_004955451:12,396,625...12,406,014
Ensembl chrNW_004955451:12,396,625...12,406,014
JBrowse link
G Snx17 sorting nexin 17 ISO (PMID:28892079) UniProt PMID:28892079 NCBI chrNW_004955469:9,334,562...9,340,766
Ensembl chrNW_004955469:9,334,563...9,340,766
JBrowse link
G Snx4 sorting nexin 4 ISO (PMID:17994011) UniProtKB PMID:17994011 NCBI chrNW_004955427:24,520,125...24,579,589
Ensembl chrNW_004955427:24,520,125...24,579,589
JBrowse link
G Stx6 syntaxin 6 ISO (PMID:25799061) MGI PMID:25799061 NCBI chrNW_004955406:20,042,552...20,089,853
Ensembl chrNW_004955406:20,048,155...20,089,906
JBrowse link
G Vps26c VPS26 endosomal protein sorting factor C ISO (PMID:28892079) UniProt PMID:28892079 NCBI chrNW_004955407:36,357,366...36,381,904
Ensembl chrNW_004955407:36,357,366...36,381,904
JBrowse link
G Vps29 VPS29 retromer complex component ISO (PMID:28892079) UniProt PMID:28892079 NCBI chrNW_004955482:7,397,123...7,405,593
Ensembl chrNW_004955482:7,397,123...7,405,591
JBrowse link
G Vps35l VPS35 endosomal protein sorting factor like ISO (PMID:28892079) UniProt PMID:28892079 NCBI chrNW_004955442:3,292,748...3,415,911
Ensembl chrNW_004955442:3,265,989...3,415,911
JBrowse link
G Vps50 VPS50 subunit of EARP/GARPII complex ISO (PMID:25799061)
(MGI:MGI:5693572|PMID:25799061)
UniProtKB
MGI
PMID:25799061 MGI:MGI:5693572 NCBI chrNW_004955432:10,134,280...10,244,390
Ensembl chrNW_004955432:10,134,141...10,245,895
JBrowse link
G Vps51 VPS51 subunit of GARP complex ISO (PMID:25799061) UniProtKB PMID:25799061 NCBI chrNW_004955422:20,091,682...20,102,371
Ensembl chrNW_004955422:20,091,682...20,102,938
JBrowse link
G Vps52 VPS52 subunit of GARP complex ISO (PMID:25799061) UniProtKB PMID:25799061 NCBI chrNW_004955437:1,820,355...1,833,615
Ensembl chrNW_004955437:1,820,817...1,833,363
JBrowse link
G Vps53 VPS53 subunit of GARP complex ISO (PMID:25799061) UniProtKB PMID:25799061 NCBI chrNW_004955481:2,130,669...2,265,065
Ensembl chrNW_004955481:2,130,888...2,264,924
JBrowse link
endosome to lysosome transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lyst lysosomal trafficking regulator ISO (PMID:9606205) UniProtKB PMID:9606205 NCBI chrNW_004955492:4,161,976...4,371,637
Ensembl chrNW_004955492:4,209,749...4,369,762
JBrowse link
G Ubxn6 UBX domain protein 6 ISO (PMID:21822278) UniProtKB PMID:21822278 NCBI chrNW_004955495:4,456,182...4,465,954
Ensembl chrNW_004955495:4,456,308...4,466,254
JBrowse link
G Vcp valosin containing protein ISO (PMID:21822278) UniProtKB PMID:21822278 NCBI chrNW_004955472:1,111,649...1,124,076
Ensembl chrNW_004955472:1,107,164...1,124,076
JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B ISO (PMID:15024011) UniProtKB PMID:15024011 NCBI chrNW_004955402:47,154,350...47,183,979
Ensembl chrNW_004955402:47,154,007...47,184,021
JBrowse link
endosome to plasma membrane protein transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snx27 sorting nexin 27 ISO RGD PMID:25136126 RGD:13508597 NCBI chrNW_004955589:719,892...799,367
Ensembl chrNW_004955589:719,898...799,366
JBrowse link
G Trarg1 trafficking regulator of GLUT4 (SLC2A4) 1 ISO (MGI:MGI:6162416|PMID:26240143)
(MGI:MGI:5788816|PMID:26629404)
UniProtKB
MGI
PMID:26240143, PMID:26629404 MGI:MGI:5788816, MGI:MGI:6162416 NCBI chrNW_004955481:2,775,426...2,789,929
Ensembl chrNW_004955481:2,775,426...2,791,997
JBrowse link
endosome transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dennd10 DENN domain containing 10 ISO (PMID:30771381) UniProt PMID:30771381 NCBI chrNW_004955431:23,601,338...23,623,852
Ensembl chrNW_004955431:23,600,589...23,624,292
JBrowse link
G Laptm4b lysosomal protein transmembrane 4 beta ISO (PMID:25588945) UniProtKB PMID:25588945 NCBI chrNW_004955417:13,574,493...13,625,669
Ensembl chrNW_004955417:13,574,721...13,625,313
JBrowse link
G Rilp Rab interacting lysosomal protein ISO (PMID:17010938) UniProtKB PMID:17010938 NCBI chrNW_004955481:1,531,175...1,534,794
Ensembl chrNW_004955481:1,531,574...1,534,443
JBrowse link
G Sort1 sortilin 1 ISO (PMID:11331584) BHF-UCL PMID:11331584 NCBI chrNW_004955435:12,725,952...12,819,280
Ensembl chrNW_004955435:12,730,270...12,819,029
JBrowse link
late endosome to Golgi transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcc2 GRIP and coiled-coil domain containing 2 ISO (PMID:16885419) UniProtKB PMID:16885419 NCBI chrNW_004955470:12,011,606...12,053,625
Ensembl chrNW_004955470:12,011,708...12,055,907
JBrowse link
G Rab7b RAB7B, member RAS oncogene family ISO (PMID:20375062) UniProtKB PMID:20375062 NCBI chrNW_004955406:41,615,302...41,638,157
Ensembl chrNW_004955406:41,615,302...41,638,151
JBrowse link
G Sgsm2 small G protein signaling modulator 2 ISO (PMID:21808068) UniProtKB PMID:21808068 NCBI chrNW_004955481:871,719...907,326
Ensembl chrNW_004955481:871,654...907,326
JBrowse link
negative regulation of endocytic recycling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgap1 Rho GTPase activating protein 1 ISO (PMID:16380373) CAFA PMID:16380373 NCBI chrNW_004955422:1,378,426...1,395,439
Ensembl chrNW_004955422:1,378,426...1,396,899
JBrowse link
negative regulation of retrograde transport, endosome to Golgi term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip1 ADP ribosylation factor interacting protein 1 ISO (PMID:25789876) CACAO PMID:25789876 NCBI chrNW_004955471:7,238,456...7,349,767
Ensembl chrNW_004955471:7,238,456...7,351,055
JBrowse link
neurotransmitter receptor transport, endosome to plasma membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo5b myosin VB ISO PMID:18984164 SynGO PMID:18984164 RGD:11533643 NCBI chrNW_004955402:34,892,652...35,247,431 JBrowse link
G Vps35 VPS35 retromer complex component ISO (PMID:27460146)
(MGI:MGI:5796045|PMID:27460146)
ParkinsonsUK-UCL PMID:27460146 MGI:MGI:5796045 NCBI chrNW_004955448:207,582...240,264
Ensembl chrNW_004955448:204,991...240,160
JBrowse link
neurotransmitter receptor transport, endosome to postsynaptic membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgap44 Rho GTPase activating protein 44 ISO (MGI:MGI:5498598|PMID:23739967) SynGO PMID:23739967 MGI:MGI:5498598 NCBI chrNW_004955467:4,428,738...4,590,877
Ensembl chrNW_004955467:4,430,087...4,522,611
JBrowse link
G Grip1 glutamate receptor interacting protein 1 ISO (MGI:MGI:4840152|PMID:20956289) SynGO PMID:20956289 MGI:MGI:4840152 NCBI chrNW_004955458:12,970,858...13,179,369
Ensembl chrNW_004955458:12,967,089...13,214,838
JBrowse link
G Grip2 glutamate receptor interacting protein 2 ISO (MGI:MGI:4840152|PMID:20956289) SynGO PMID:20956289 MGI:MGI:4840152 NCBI chrNW_004955429:17,132,520...17,177,547
Ensembl chrNW_004955429:17,134,158...17,160,036
JBrowse link
G Gripap1 GRIP1 associated protein 1 ISO PMID:20098723 SynGO PMID:20098723 RGD:12050105 NCBI chrNW_004955543:500,340...527,243
Ensembl chrNW_004955543:500,340...527,267
JBrowse link
G Nsg1 neuronal vesicle trafficking associated 1 ISO (MGI:MGI:5819354|PMID:16037816) SynGO PMID:16037816 MGI:MGI:5819354 NCBI chrNW_004955514:5,273,810...5,294,925
Ensembl chrNW_004955514:5,273,810...5,295,710
JBrowse link
G Rab11a RAB11A, member RAS oncogene family ISO PMID:18045925 SynGO PMID:18045925 RGD:2306457 NCBI chrNW_004955450:9,638,761...9,656,291
Ensembl chrNW_004955450:9,638,761...9,656,603
JBrowse link
G Rab8a RAB8A, member RAS oncogene family ISO PMID:18045925 SynGO PMID:18045925 RGD:2306457 NCBI chrNW_004955524:1,403,811...1,416,005
Ensembl chrNW_004955524:1,403,811...1,416,005
JBrowse link
G Scrib scribble planar cell polarity protein ISO PMID:25310985 SynGO PMID:25310985 RGD:12050130 NCBI chrNW_004955454:2,461,526...2,482,734
Ensembl chrNW_004955454:2,461,760...2,482,098
JBrowse link
G Vps35 VPS35 retromer complex component ISO (MGI:MGI:6114586|PMID:28384478) MGI PMID:28384478 MGI:MGI:6114586 NCBI chrNW_004955448:207,582...240,264
Ensembl chrNW_004955448:204,991...240,160
JBrowse link
positive regulation of endocytic recycling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn2 actinin alpha 2 ISO (PMID:19815520)
(MGI:MGI:4366185|PMID:19815520)
UniProtKB PMID:19815520 MGI:MGI:4366185 NCBI chrNW_004955492:3,483,704...3,554,831
Ensembl chrNW_004955492:3,483,511...3,555,190
JBrowse link
G Ehd1 EH domain containing 1 ISO (MGI:MGI:5487527|PMID:21177873) UniProtKB PMID:21177873 MGI:MGI:5487527 NCBI chrNW_004955422:20,302,409...20,324,591
Ensembl chrNW_004955422:20,302,655...20,324,591
JBrowse link
G Ehd2 EH domain containing 2 ISO (MGI:MGI:5487527|PMID:21177873) UniProtKB PMID:21177873 MGI:MGI:5487527 NCBI chrNW_004955574:1,490,877...1,503,651
Ensembl chrNW_004955574:1,490,877...1,503,943
JBrowse link
G Eipr1 EARP complex and GARP complex interacting protein 1 ISO (PMID:27440922) UniProt PMID:27440922 NCBI chrNW_004955487:3,865,469...3,959,750
Ensembl chrNW_004955487:3,865,640...3,959,801
JBrowse link
G Pla2g4e phospholipase A2 group IVE ISO (MGI:MGI:6414707|PMID:24413173)
(PMID:24413173)
UniProt PMID:24413173 MGI:MGI:6414707 NCBI chrNW_004955416:8,765,620...8,826,184
Ensembl chrNW_004955416:8,765,561...8,804,616
JBrowse link
G Sorl1 sortilin related receptor 1 ISO (PMID:22621900) Alzheimers_University_of_Toronto PMID:22621900 NCBI chrNW_004955412:22,421,984...22,576,179
Ensembl chrNW_004955412:22,421,984...22,576,179
JBrowse link
positive regulation of endosome to plasma membrane protein transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap5 A-kinase anchoring protein 5 ISO (PMID:25589740) UniProt PMID:25589740 NCBI chrNW_004955466:5,411,190...5,422,043
Ensembl chrNW_004955466:5,411,650...5,412,960
JBrowse link
G Commd1 copper metabolism domain containing 1 ISO (MGI:MGI:5806548|PMID:26965651) MGI PMID:26965651 MGI:MGI:5806548 NCBI chrNW_004955424:21,962,837...22,067,745
Ensembl chrNW_004955424:21,927,079...22,050,371
JBrowse link
G Zdhhc2 zinc finger DHHC-type palmitoyltransferase 2 ISO PMID:25589740 UniProt PMID:25589740 RGD:21201275 NCBI chrNW_004955463:315,531...345,712
Ensembl chrNW_004955463:315,531...345,716
JBrowse link
positive regulation of retrograde transport, endosome to Golgi term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eipr1 EARP complex and GARP complex interacting protein 1 ISO (PMID:27440922) UniProt PMID:27440922 NCBI chrNW_004955487:3,865,469...3,959,750
Ensembl chrNW_004955487:3,865,640...3,959,801
JBrowse link
recycling endosome to Golgi transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcc2 GRIP and coiled-coil domain containing 2 ISO (PMID:17488291) UniProtKB PMID:17488291 NCBI chrNW_004955470:12,011,606...12,053,625
Ensembl chrNW_004955470:12,011,708...12,055,907
JBrowse link
G Tbc1d14 TBC1 domain family member 14 ISO (PMID:17562788) UniProtKB PMID:17562788 NCBI chrNW_004955514:3,485,975...3,553,840
Ensembl chrNW_004955514:3,485,841...3,567,377
JBrowse link
regulation of endocytic recycling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bves blood vessel epicardial substance ISO (MGI:MGI:5613454|PMID:24048452) BHF-UCL PMID:24048452 MGI:MGI:5613454 NCBI chrNW_004955411:30,517,917...30,548,424
Ensembl chrNW_004955411:30,517,875...30,551,335
JBrowse link
G Inpp5f inositol polyphosphate-5-phosphatase F ISO (MGI:MGI:5751634|PMID:25869669)
(PMID:25869669)
UniProtKB PMID:25869669 MGI:MGI:5751634 NCBI chrNW_004955551:634,724...641,266
Ensembl chrNW_004955551:570,304...640,243
JBrowse link
G Ndrg4 NDRG family member 4 ISO (MGI:MGI:5613454|PMID:24048452) BHF-UCL PMID:24048452 MGI:MGI:5613454 NCBI chrNW_004955433:15,914,884...15,933,000
Ensembl chrNW_004955433:15,914,823...15,933,659
JBrowse link
G Pla2g3 phospholipase A2 group III ISO (PMID:20393563) UniProt PMID:20393563 NCBI chrNW_004955455:5,314,520...5,320,151
Ensembl chrNW_004955455:5,315,450...5,320,053
JBrowse link
G Rab11b RAB11B, member RAS oncogene family ISO (MGI:MGI:5486575|PMID:10942597) UniProtKB PMID:10942597 MGI:MGI:5486575 NCBI chrNW_004955563:1,008,267...1,017,315
Ensembl chrNW_004955563:1,008,769...1,017,315
JBrowse link
regulation of multivesicular body size involved in endosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snf8 SNF8 subunit of ESCRT-II ISO (PMID:17714434) UniProtKB PMID:17714434 NCBI chrNW_004955451:12,396,625...12,406,014
Ensembl chrNW_004955451:12,396,625...12,406,014
JBrowse link
regulation of neurotransmitter receptor transport, endosome to postsynaptic membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgap44 Rho GTPase activating protein 44 ISO (MGI:MGI:5498598|PMID:23739967) SynGO PMID:23739967 MGI:MGI:5498598 NCBI chrNW_004955467:4,428,738...4,590,877
Ensembl chrNW_004955467:4,430,087...4,522,611
JBrowse link
G Gripap1 GRIP1 associated protein 1 ISO PMID:20098723 SynGO PMID:20098723 RGD:12050105 NCBI chrNW_004955543:500,340...527,243
Ensembl chrNW_004955543:500,340...527,267
JBrowse link
G Tamalin trafficking regulator and scaffold protein tamalin ISO (MGI:MGI:6114599|PMID:28285821) MGI PMID:28285821 MGI:MGI:6114599 NCBI chrNW_004955547:2,377,612...2,385,918
Ensembl chrNW_004955547:2,377,702...2,385,277
JBrowse link
regulation of recycling endosome localization within postsynapse term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gripap1 GRIP1 associated protein 1 ISO PMID:20098723 SynGO PMID:20098723 RGD:12050105 NCBI chrNW_004955543:500,340...527,243
Ensembl chrNW_004955543:500,340...527,267
JBrowse link
regulation of retrograde transport, endosome to Golgi term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine rich repeat kinase 2 ISO (PMID:23395371) ParkinsonsUK-UCL PMID:23395371 NCBI chrNW_004955505:84,324...216,923
Ensembl chrNW_004955505:81,796...216,923
JBrowse link
G Rab29 RAB29, member RAS oncogene family ISO PMID:23395371 ParkinsonsUK-UCL PMID:23395371 RGD:8553873 NCBI chrNW_004955406:41,452,733...41,468,467
Ensembl chrNW_004955406:41,462,534...41,468,948
JBrowse link
retrograde transport, endosome to Golgi term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankfy1 ankyrin repeat and FYVE domain containing 1 ISO (PMID:22284051) UniProtKB PMID:22284051 NCBI chrNW_004955467:12,644,070...12,734,546
Ensembl chrNW_004955467:12,644,098...12,730,711
JBrowse link
G Ap1s1 adaptor related protein complex 1 subunit sigma 1 ISO (MGI:MGI:5608551|PMID:24928897) MGI PMID:24928897 MGI:MGI:5608551 NCBI chrNW_004955456:16,127,877...16,134,039
Ensembl chrNW_004955456:16,127,877...16,134,039
JBrowse link
G Arfrp1 ADP ribosylation factor related protein 1 ISO (PMID:16129887) UniProtKB PMID:16129887 NCBI chrNW_004955528:519,887...529,012
Ensembl chrNW_004955528:519,887...529,012
JBrowse link
G Arl1 ADP ribosylation factor like GTPase 1 ISO (PMID:19224922) UniProtKB PMID:19224922 NCBI chrNW_004955405:36,913,011...36,932,383
Ensembl chrNW_004955405:36,913,011...36,918,017
JBrowse link
G Baiap3 BAI1 associated protein 3 ISO (PMID:28626000) UniProtKB PMID:28626000 NCBI chrNW_004955442:15,884,034...15,897,894
Ensembl chrNW_004955442:15,884,034...15,898,396
JBrowse link
G Bet1l Bet1 golgi vesicular membrane trafficking protein like ISO (PMID:15215310) HGNC PMID:15215310 NCBI chrNW_004955476:11,833,595...11,836,411
Ensembl chrNW_004955476:11,833,595...11,836,411
JBrowse link
G Cln5 CLN5 intracellular trafficking protein ISO (PMID:22431521) UniProtKB PMID:22431521 NCBI chrNW_004955404:30,229,632...30,235,677 JBrowse link
G Cltc clathrin heavy chain ISO (PMID:20065094) UniProtKB PMID:20065094 NCBI chrNW_004955451:3,380,304...3,445,973
Ensembl chrNW_004955451:3,380,304...3,445,973
JBrowse link
G Cltcl1 clathrin heavy chain like 1 ISO (PMID:20065094) UniProtKB PMID:20065094 NCBI chrNW_004955442:18,688,019...18,803,458
Ensembl chrNW_004955442:18,687,746...18,804,104
JBrowse link
G Dctn1 dynactin subunit 1 ISO (PMID:19619496) UniProtKB PMID:19619496 NCBI chrNW_004955424:11,362,240...11,413,140
Ensembl chrNW_004955424:11,392,812...11,413,140
JBrowse link
G Dennd2a DENN domain containing 2A ISO (PMID:20937701) UniProtKB PMID:20937701 NCBI chrNW_004955494:2,768,097...2,831,809
Ensembl chrNW_004955494:2,781,277...2,832,318
JBrowse link
G Dennd5a DENN domain containing 5A ISO (PMID:19619496) UniProtKB PMID:19619496 NCBI chrNW_004955414:24,861,950...24,955,031
Ensembl chrNW_004955414:24,861,242...24,955,045
JBrowse link
G Erc1 ELKS/RAB6-interacting/CAST family member 1 ISO (MGI:MGI:2182501|PMID:11929610) MGI PMID:11929610 MGI:MGI:2182501 NCBI chrNW_004955454:3,584,910...4,036,276
Ensembl chrNW_004955454:3,586,667...4,031,130
JBrowse link
G Evi5 ecotropic viral integration site 5 ISO (PMID:17562788) UniProtKB PMID:17562788 NCBI chrNW_004955423:1,784,255...1,997,561
Ensembl chrNW_004955423:1,784,264...1,997,561
JBrowse link
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 ISO (PMID:12808027) UniProtKB PMID:12808027 NCBI chrNW_004955485:8,006,161...8,126,074
Ensembl chrNW_004955485:8,006,706...8,115,561
JBrowse link
G Gcc2 GRIP and coiled-coil domain containing 2 ISO (PMID:17488291) UniProtKB PMID:17488291 NCBI chrNW_004955470:12,011,606...12,053,625
Ensembl chrNW_004955470:12,011,708...12,055,907
JBrowse link
G Gga1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 ISO (PMID:15886016) UniProt PMID:15886016 NCBI chrNW_004955413:24,018,595...24,037,887
Ensembl chrNW_004955413:24,018,595...24,037,887
JBrowse link
G Gosr1 golgi SNAP receptor complex member 1 ISO (PMID:15215310) HGNC PMID:15215310 NCBI chrNW_004955481:2,831,118...2,876,756
Ensembl chrNW_004955481:2,831,118...2,876,756
JBrowse link
G Magel2 MAGE family member L2 ISO (PMID:23452853) UniProtKB PMID:23452853 NCBI chrNW_004955416:31,091,306...31,095,420
Ensembl chrNW_004955416:31,091,151...31,095,484
JBrowse link
G Pheta1 PH domain containing endocytic trafficking adaptor 1 ISO (PMID:21233288) UniProtKB PMID:21233288 NCBI chrNW_004955482:8,052,534...8,058,004 JBrowse link
G Pheta2 PH domain containing endocytic trafficking adaptor 2 ISO (PMID:21233288) UniProtKB PMID:21233288 NCBI chrNW_004955413:27,475,658...27,480,879
Ensembl chrNW_004955413:27,475,658...27,480,879
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing ISO (PMID:14551253), (PMID:16954148) UniProtKB PMID:14551253, PMID:16954148 NCBI chrNW_004955457:6,749,226...6,841,855
Ensembl chrNW_004955457:6,748,534...6,842,489
JBrowse link
G Prepl prolyl endopeptidase like ISO (MGI:MGI:6316362|PMID:23321636) UniProt PMID:23321636 MGI:MGI:6316362 NCBI chrNW_004955441:11,418,299...11,453,889
Ensembl chrNW_004955441:11,418,299...11,453,218
JBrowse link
G Rab29 RAB29, member RAS oncogene family ISO (PMID:24788816) UniProtKB PMID:24788816 NCBI chrNW_004955406:41,452,733...41,468,467
Ensembl chrNW_004955406:41,462,534...41,468,948
JBrowse link
G Rab7a RAB7A, member RAS oncogene family ISO (PMID:19531583) UniProtKB PMID:19531583 NCBI chrNW_004955429:15,103,792...15,167,498 JBrowse link
G Rgp1 RGP1 homolog, RAB6A GEF complex partner 1 ISO (PMID:23091056) UniProtKB PMID:23091056 NCBI chrNW_004955472:550,198...554,038
Ensembl chrNW_004955472:550,198...554,038
JBrowse link
G Rhobtb3 Rho related BTB domain containing 3 ISO (PMID:19490898) UniProtKB PMID:19490898 NCBI chrNW_004955418:16,772,363...16,839,347 JBrowse link
G Ric1 RIC1 homolog, RAB6A GEF complex partner 1 ISO (PMID:23091056) UniProtKB PMID:23091056 NCBI chrNW_004955434:9,675,654...9,770,174
Ensembl chrNW_004955434:9,675,654...9,770,174
JBrowse link
G Rnf126 ring finger protein 126 ISO (PMID:24275455) UniProtKB PMID:24275455 NCBI chrNW_004955495:7,083,952...7,098,442
Ensembl chrNW_004955495:7,095,336...7,102,757
JBrowse link
G Snx1 sorting nexin 1 ISO (PMID:18088323) UniProtKB PMID:18088323 NCBI chrNW_004955450:11,266,712...11,306,014
Ensembl chrNW_004955450:11,266,712...11,305,930
JBrowse link
G Snx2 sorting nexin 2 ISO (PMID:20138391) UniProtKB PMID:20138391 NCBI chrNW_004955521:870,469...934,112 JBrowse link
G Snx5 sorting nexin 5 ISO (PMID:17148574) UniProtKB PMID:17148574 NCBI chrNW_004955415:26,786,836...26,805,762
Ensembl chrNW_004955415:26,785,326...26,796,566
JBrowse link
G Snx6 sorting nexin 6 ISO (PMID:19935774) UniProtKB PMID:19935774 NCBI chrNW_004955409:26,323,940...26,353,675
Ensembl chrNW_004955409:26,319,951...26,352,994
JBrowse link
G Spag9 sperm associated antigen 9 ISO (PMID:19056739) MGI PMID:19056739 NCBI chrNW_004955451:10,800,251...10,895,400
Ensembl chrNW_004955451:10,800,128...10,895,400
JBrowse link
G Stx16 syntaxin 16 ISO (PMID:15215310), (PMID:18195106)
(PMID:17389686)
HGNC
UniProtKB
PMID:15215310, PMID:17389686, PMID:18195106 NCBI chrNW_004955445:884,372...910,010 JBrowse link
G Stx5 syntaxin 5 ISO (PMID:15215310) HGNC PMID:15215310 NCBI chrNW_004955599:414,338...438,581
Ensembl chrNW_004955599:414,392...438,581
JBrowse link
G Stx6 syntaxin 6 ISO (PMID:19224922) UniProtKB PMID:19224922 NCBI chrNW_004955406:20,042,552...20,089,853
Ensembl chrNW_004955406:20,048,155...20,089,906
JBrowse link
G Tbc1d10a TBC1 domain family member 10A ISO (PMID:17562788) UniProtKB PMID:17562788 NCBI chrNW_004955455:4,537,634...4,570,949
Ensembl chrNW_004955455:4,537,634...4,570,949
JBrowse link
G Tbc1d10b TBC1 domain family member 10B ISO (PMID:17562788) UniProtKB PMID:17562788 NCBI chrNW_004955493:7,286,030...7,298,223
Ensembl chrNW_004955493:7,286,837...7,298,968
JBrowse link
G Tbc1d10c TBC1 domain family member 10C ISO (PMID:17562788) UniProtKB PMID:17562788 NCBI chrNW_004955422:18,069,686...18,075,795
Ensembl chrNW_004955422:18,069,686...18,075,794
JBrowse link
G Tbc1d17 TBC1 domain family member 17 ISO (PMID:17562788) UniProtKB PMID:17562788 NCBI chrNW_004955559:1,047,389...1,055,891
Ensembl chrNW_004955559:1,045,988...1,055,891
JBrowse link
G Tbc1d23 TBC1 domain family member 23 ISO (PMID:29084197) UniProtKB PMID:29084197 NCBI chrNW_004955427:1,811,132...1,849,348
Ensembl chrNW_004955427:1,810,096...1,852,828
JBrowse link
G Tbc1d5 TBC1 domain family member 5 ISO (PMID:22354992) UniProtKB PMID:22354992 NCBI chrNW_004955430:9,411,865...9,966,710
Ensembl chrNW_004955430:9,410,475...9,940,460
JBrowse link
G Tmem87a transmembrane protein 87A ISO (PMID:26157166) UniProtKB PMID:26157166 NCBI chrNW_004955416:8,938,758...8,990,800
Ensembl chrNW_004955416:8,937,110...8,990,800
JBrowse link
G Tmem87b transmembrane protein 87B ISO (PMID:26157166) UniProtKB PMID:26157166 NCBI chrNW_004955470:1,996,728...2,045,427
Ensembl chrNW_004955470:1,996,728...2,041,710
JBrowse link
G Trim27 tripartite motif containing 27 ISO (PMID:23452853) UniProtKB PMID:23452853 NCBI chrNW_004955465:13,891,001...13,902,767
Ensembl chrNW_004955465:13,890,900...13,903,016
JBrowse link
G Ube2o ubiquitin conjugating enzyme E2 O ISO (PMID:23452853) UniProtKB PMID:23452853 NCBI chrNW_004955506:5,842,772...5,901,122
Ensembl chrNW_004955506:5,842,772...5,901,122
JBrowse link
G Vamp3 vesicle associated membrane protein 3 ISO (PMID:18195106) UniProtKB PMID:18195106 NCBI chrNW_004955486:5,103,228...5,112,157
Ensembl chrNW_004955486:5,103,106...5,112,176
JBrowse link
G Vps26a VPS26, retromer complex component A ISO (PMID:15078903)
(MGI:MGI:3040541|PMID:15078902)
UniProtKB
MGI
PMID:15078902, PMID:15078903 MGI:MGI:3040541 NCBI chrNW_004955437:21,911,111...21,944,888
Ensembl chrNW_004955437:21,910,680...21,944,428
JBrowse link
G Vps26b VPS26, retromer complex component B ISO (MGI:MGI:5607223|PMID:21920005) UniProtKB PMID:21920005 MGI:MGI:5607223 NCBI chrNW_004955412:35,035,730...35,061,441
Ensembl chrNW_004955412:35,035,208...35,061,441
JBrowse link
G Vps35 VPS35 retromer complex component ISO PMID:23395371
(PMID:15078903), (PMID:26618722), (PMID:27385586)
ParkinsonsUK-UCL
UniProtKB
PMID:15078903, PMID:23395371, PMID:26618722, PMID:27385586 RGD:8553873 NCBI chrNW_004955448:207,582...240,264
Ensembl chrNW_004955448:204,991...240,160
JBrowse link
G Vps50 VPS50 subunit of EARP/GARPII complex NOT ISO (PMID:25799061) UniProtKB PMID:25799061 NCBI chrNW_004955432:10,134,280...10,244,390
Ensembl chrNW_004955432:10,134,141...10,245,895
JBrowse link
G Vps51 VPS51 subunit of GARP complex ISO (PMID:25799061)
(PMID:20685960)
MGI
UniProtKB
PMID:20685960, PMID:25799061 NCBI chrNW_004955422:20,091,682...20,102,371
Ensembl chrNW_004955422:20,091,682...20,102,938
JBrowse link
G Vps53 VPS53 subunit of GARP complex ISO (PMID:25799061) UniProtKB PMID:25799061 NCBI chrNW_004955481:2,130,669...2,265,065
Ensembl chrNW_004955481:2,130,888...2,264,924
JBrowse link
G Vps54 VPS54 subunit of GARP complex ISO (PMID:25799061) MGI PMID:25799061 NCBI chrNW_004955424:20,329,009...20,443,652
Ensembl chrNW_004955424:20,327,754...20,445,980
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A ISO (PMID:19224922)
(PMID:15215310), (PMID:18195106)
UniProtKB
HGNC
PMID:15215310, PMID:18195106, PMID:19224922 NCBI chrNW_004955431:17,542,605...17,910,809
Ensembl chrNW_004955431:17,542,979...17,919,191
JBrowse link
G Washc2c WASH complex subunit 2C ISO (PMID:19922874) UniProtKB PMID:19922874 NCBI chrNW_004955546:2,718,758...2,764,277 JBrowse link
G Ykt6 YKT6 v-SNARE homolog ISO (PMID:15215310) HGNC PMID:15215310 NCBI chrNW_004955456:7,764,125...7,776,429
Ensembl chrNW_004955456:7,763,982...7,776,153
JBrowse link
retrograde transport, endosome to plasma membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd27 ankyrin repeat domain 27 ISO (PMID:24856514) UniProtKB PMID:24856514 NCBI chrNW_004955468:5,314,779...5,364,925 JBrowse link
G Ankrd50 ankyrin repeat domain 50 ISO (PMID:25278552) UniProtKB PMID:25278552 NCBI chrNW_004955428:16,360,602...16,397,829
Ensembl chrNW_004955428:16,360,598...16,398,188
JBrowse link
G Ccdc22 coiled-coil domain containing 22 ISO (PMID:28892079) UniProt PMID:28892079 NCBI chrNW_004955543:719,185...731,788
Ensembl chrNW_004955543:718,996...733,753
JBrowse link
G Ccdc93 coiled-coil domain containing 93 ISO (PMID:28892079) UniProt PMID:28892079 NCBI chrNW_004955459:11,668,605...11,748,327
Ensembl chrNW_004955459:11,668,605...11,748,327
JBrowse link
G Entr1 endosome associated trafficking regulator 1 ISO (PMID:25278552) UniProtKB PMID:25278552 NCBI chrNW_004955513:4,322,002...4,329,479
Ensembl chrNW_004955513:4,322,871...4,330,012
JBrowse link
G Micall1 MICAL like 1 ISO (PMID:19864458) UniProtKB PMID:19864458 NCBI chrNW_004955413:24,264,726...24,290,578
Ensembl chrNW_004955413:24,264,726...24,289,434
JBrowse link
G Rab11b RAB11B, member RAS oncogene family ISO (PMID:19244346) UniProtKB PMID:19244346 NCBI chrNW_004955563:1,008,267...1,017,315
Ensembl chrNW_004955563:1,008,769...1,017,315
JBrowse link
G Snx17 sorting nexin 17 ISO (PMID:28892079) UniProt PMID:28892079 NCBI chrNW_004955469:9,334,562...9,340,766
Ensembl chrNW_004955469:9,334,563...9,340,766
JBrowse link
G Snx27 sorting nexin 27 ISO (PMID:20733053), (PMID:21602791), (PMID:23563491) UniProtKB PMID:20733053, PMID:21602791, PMID:23563491 NCBI chrNW_004955589:719,892...799,367
Ensembl chrNW_004955589:719,898...799,366
JBrowse link
G Vps26a VPS26, retromer complex component A ISO (PMID:21602791) UniProtKB PMID:21602791 NCBI chrNW_004955437:21,911,111...21,944,888
Ensembl chrNW_004955437:21,910,680...21,944,428
JBrowse link
G Vps26c VPS26 endosomal protein sorting factor C ISO (PMID:28892079) UniProt PMID:28892079 NCBI chrNW_004955407:36,357,366...36,381,904
Ensembl chrNW_004955407:36,357,366...36,381,904
JBrowse link
G Vps29 VPS29 retromer complex component ISO (PMID:24856514), (PMID:28892079) UniProt PMID:24856514, PMID:28892079 NCBI chrNW_004955482:7,397,123...7,405,593
Ensembl chrNW_004955482:7,397,123...7,405,591
JBrowse link
G Vps35 VPS35 retromer complex component ISO (PMID:20164305), (PMID:21602791) UniProtKB PMID:20164305, PMID:21602791 NCBI chrNW_004955448:207,582...240,264
Ensembl chrNW_004955448:204,991...240,160
JBrowse link
G Vps35l VPS35 endosomal protein sorting factor like ISO (PMID:28892079) UniProt PMID:28892079 NCBI chrNW_004955442:3,292,748...3,415,911
Ensembl chrNW_004955442:3,265,989...3,415,911
JBrowse link
G Vps39 VPS39 subunit of HOPS complex ISO (PMID:25266290) UniProtKB PMID:25266290 NCBI chrNW_004955416:8,893,249...8,936,351
Ensembl chrNW_004955416:8,893,249...8,936,351
JBrowse link
G Washc2c WASH complex subunit 2C ISO (PMID:25278552) UniProtKB PMID:25278552 NCBI chrNW_004955546:2,718,758...2,764,277 JBrowse link
slow endocytic recycling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Micall1 MICAL like 1 ISO (PMID:19864458) UniProtKB PMID:19864458 NCBI chrNW_004955413:24,264,726...24,290,578
Ensembl chrNW_004955413:24,264,726...24,289,434
JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 ISO (MGI:MGI:5617942|PMID:20203623) SynGO PMID:20203623 MGI:MGI:5617942 NCBI chrNW_004955519:2,351,754...2,370,650 JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 ISO (MGI:MGI:6189637|PMID:11588176) SynGO PMID:11588176 MGI:MGI:6189637 NCBI chrNW_004955425:22,792,616...23,051,509
Ensembl chrNW_004955425:22,792,616...23,051,737
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 ISO PMID:22539861
(MGI:MGI:6189637|PMID:11588176)
SynGO
MGI
PMID:11588176, PMID:22539861 MGI:MGI:6189637, RGD:12050120 NCBI chrNW_004955495:5,972,177...6,012,525
Ensembl chrNW_004955495:5,972,433...6,012,433
JBrowse link
synaptic vesicle recycling via endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2l1 BCL2 like 1 ISO PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chrNW_004955422:29,254,440...29,307,104
Ensembl chrNW_004955422:29,254,216...29,308,174
JBrowse link
G Dnm1l dynamin 1 like ISO PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chrNW_004955505:3,025,742...3,081,491
Ensembl chrNW_004955505:3,023,018...3,081,680
JBrowse link
synaptic vesicle to endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stx12 syntaxin 12 ISO PMID:17004320 SynGO PMID:17004320 RGD:12050136 NCBI chrNW_004955452:6,977,813...7,015,281
Ensembl chrNW_004955452:6,977,101...7,015,281
JBrowse link
G Stx6 syntaxin 6 ISO PMID:17004320 SynGO PMID:17004320 RGD:12050136 NCBI chrNW_004955406:20,042,552...20,089,853
Ensembl chrNW_004955406:20,048,155...20,089,906
JBrowse link
G Vamp4 vesicle associated membrane protein 4 ISO PMID:26607000
PMID:17004320
SynGO PMID:17004320, PMID:26607000 RGD:11058152, RGD:12050136 NCBI chrNW_004955406:12,223,736...12,260,506 JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A ISO PMID:17004320 SynGO PMID:17004320 RGD:12050136 NCBI chrNW_004955431:17,542,605...17,910,809
Ensembl chrNW_004955431:17,542,979...17,919,191
JBrowse link
trans-Golgi network to recycling endosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab13 RAB13, member RAS oncogene family ISO (PMID:18779367) UniProtKB PMID:18779367 NCBI chrNW_004955545:590,021...594,191 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11892
    cellular process 11094
      vesicle-mediated transport 1113
        endosomal transport 172
          endocytic recycling + 48
          endosome transport via multivesicular body sorting pathway + 9
          retrograde transport, endosome to Golgi + 71
          retrograde transport, endosome to plasma membrane + 30
          synaptic vesicle endosomal processing + 10
          trans-Golgi network to recycling endosome transport 1
Path 2
Term Annotations click to browse term
  biological_process 11892
    localization 4760
      establishment of localization 3410
        establishment of localization in cell 1643
          intracellular transport 1052
            endosomal transport 172
              endocytic recycling + 48
              endosome transport via multivesicular body sorting pathway + 9
              retrograde transport, endosome to Golgi + 71
              retrograde transport, endosome to plasma membrane + 30
              synaptic vesicle endosomal processing + 10
              trans-Golgi network to recycling endosome transport 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.