Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:carotenoid metabolic process
go back to main search page
Accession:GO:0016116 term browser browse the term
Definition:The chemical reactions and pathways involving carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.
Synonyms:exact_synonym: carotenoid metabolism
 never_in_taxon: NCBITaxon:4896 ! Schizosaccharomyces pombe;   NCBITaxon:4932 ! Saccharomyces cerevisiae



show annotations for term's descendants           Sort by:
carotenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco2 beta-carotene oxygenase 2 involved_in ISO (MGI:4947204|PMID:21106934) RGD PMID:21106934 MGI:4947204 NCBI chr 8:50,882,174...50,907,676
Ensembl chr 8:50,882,181...50,915,467
JBrowse link
beta-carotene metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco1 beta-carotene oxygenase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3767552 (PMID:25701869)
Ensembl
RGD
PMID:25701869 GO_REF:0000107 NCBI chr19:45,149,250...45,186,102
Ensembl chr19:45,149,265...45,186,101
JBrowse link
xanthophyll catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco2 beta-carotene oxygenase 2 involved_in ISO (MGI:4947204|PMID:21106934) RGD PMID:21106934 MGI:4947204 NCBI chr 8:50,882,174...50,907,676
Ensembl chr 8:50,882,181...50,915,467
JBrowse link
xanthophyll metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco2 beta-carotene oxygenase 2 acts_upstream_of_or_within ISO MGI:4840382 (PMID:25701869) RGD PMID:25701869 NCBI chr 8:50,882,174...50,907,676
Ensembl chr 8:50,882,181...50,915,467
JBrowse link
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpe65 retinoid isomerohydrolase RPE65 involved_in ISO
ISS
IBA
(PMID:28874556)
GO_REF:0000024
GO_REF:0000033
RGD
UniProt
GO_Central
PMID:28874556 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19872
    metabolic process 11602
      cellular metabolic process 9669
        cellular lipid metabolic process 1068
          isoprenoid metabolic process 128
            terpenoid metabolic process 99
              tetraterpenoid metabolic process 3
                carotenoid metabolic process 3
                  alpha-zeacarotene metabolic process + 0
                  beta-carotene metabolic process + 1
                  beta-zeacarotene metabolic process + 0
                  carotenoid biosynthetic process + 1
                  carotenoid catabolic process + 1
                  delta-carotene metabolic process + 0
                  xanthophyll metabolic process + 2
                  zeaxanthin bis(beta-D-glucoside) metabolic process + 0
Path 2
Term Annotations click to browse term
  biological_process 19872
    metabolic process 11602
      primary metabolic process 10139
        lipid metabolic process 1449
          cellular lipid metabolic process 1068
            isoprenoid metabolic process 128
              terpenoid metabolic process 99
                tetraterpenoid metabolic process 3
                  carotenoid metabolic process 3
                    alpha-zeacarotene metabolic process + 0
                    beta-carotene metabolic process + 1
                    beta-zeacarotene metabolic process + 0
                    carotenoid biosynthetic process + 1
                    carotenoid catabolic process + 1
                    delta-carotene metabolic process + 0
                    xanthophyll metabolic process + 2
                    zeaxanthin bis(beta-D-glucoside) metabolic process + 0
paths to the root