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ONTOLOGY REPORT - ANNOTATIONS

Term:terpenoid biosynthetic process
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Accession:GO:0016114 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.
Synonyms:exact_synonym: terpenoid anabolism;   terpenoid biosynthesis;   terpenoid formation;   terpenoid synthesis
 xref: Wikipedia:Terpenoid


show annotations for term's descendants           Sort by:
9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:11876656) MGI PMID:11876656 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,299...226,217,308 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046 		JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:29,060,682...29,083,815
Ensembl chr 1:29,060,701...29,083,143 		JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chr 7:58,802,887...58,809,155
Ensembl chr 7:58,802,887...58,809,775 		JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:75,507,538...75,533,942
Ensembl chr15:75,507,588...75,534,481 		JBrowse link
farnesyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FDPS farnesyl diphosphate synthase involved_in ISO
IBA		 RGD
GO_Central		 PMID:8188698 GO_REF:0000033 RGD:2316305 NCBI chr 4:94,500,140...94,514,820
Ensembl chr 4:94,500,141...94,518,408 		JBrowse link
farnesyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 involved_in IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr16:27,936,225...27,957,261
Ensembl chr16:27,936,218...27,957,193 		JBrowse link
G HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 involved_in IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 4:101,420,941...101,440,302
Ensembl chr 4:101,420,872...101,438,126 		JBrowse link
G LOC110260333 hydroxymethylglutaryl-CoA synthase, mitochondrial-like involved_in IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 4:101,385,486...101,404,273
Ensembl chr 4:101,385,512...101,443,405 		JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1C1 aldo-keto reductase family 1, member C1 involved_in ISO (PMID:21851338) UniProt PMID:21851338 NCBI chr10:65,580,297...65,594,998
Ensembl chr10:65,576,464...65,678,248 		JBrowse link
G PRMT3 protein arginine methyltransferase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:38,884,311...39,032,944
Ensembl chr 2:38,884,362...39,032,996 		JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100512656 retinol dehydrogenase 16 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 5:22,277,006...22,285,534
Ensembl chr 5:22,228,057...22,292,434 		JBrowse link
G RDH10 retinol dehydrogenase 10 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 4:62,569,877...62,600,981
Ensembl chr 4:62,569,885...62,601,439 		JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,299...226,217,308 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in ISO
IEA		 RGD
Ensembl		 PMID:15950969 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 RGD
Ensembl		 PMID:15950969 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr 1:139,451,080...139,491,514
Ensembl chr 1:139,451,049...139,491,511 		JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chr 4:93,388,198...93,393,861
Ensembl chr 4:93,388,092...93,394,155 		JBrowse link
G DHRS9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 RGD:6771322 RGD:6771354 NCBI chr15:75,507,538...75,533,942
Ensembl chr15:75,507,588...75,534,481 		JBrowse link
G RBP1 retinol binding protein 1 involved_in ISO
IEA		 RGD
InterPro		 PMID:15950969 GO_REF:0000002 RGD:6771322 NCBI chr13:80,380,958...80,407,328
Ensembl chr13:80,380,962...80,407,458 		JBrowse link
G RDH10 retinol dehydrogenase 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:62,569,877...62,600,981
Ensembl chr 4:62,569,885...62,601,439 		JBrowse link
triterpenoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LSS lanosterol synthase involved_in IEA InterPro GO_REF:0000002
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPE65 retinoid isomerohydrolase RPE65 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:144,206,078...144,229,471
Ensembl chr 6:144,206,078...144,229,467 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18944
    cellular process 18487
      metabolic process 11698
        biosynthetic process 8556
          lipid biosynthetic process 689
            isoprenoid biosynthetic process 34
              terpenoid biosynthetic process 18
                4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process 0
                GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthetic process 0
                diterpenoid biosynthetic process + 12
                farnesyl diphosphate biosynthetic process + 4
                geranyl diphosphate biosynthetic process 0
                geranylgeranyl diphosphate biosynthetic process 0
                monoterpenoid biosynthetic process + 0
                novofumigatonin biosynthetic process 0
                paraherquonin biosynthetic process 0
                phytyl diphosphate biosynthetic process 0
                polyterpenoid biosynthetic process 0
                sesquiterpenoid biosynthetic process + 0
                terpenoid biosynthetic process, mevalonate-dependent + 0
                terpenoid biosynthetic process, mevalonate-independent + 0
                tetraterpenoid biosynthetic process + 1
                triterpenoid biosynthetic process + 1
Path 2
Term Annotations click to browse term
  biological_process 18944
    cellular process 18487
      metabolic process 11698
        primary metabolic process 10347
          lipid metabolic process 1342
            isoprenoid metabolic process 111
              terpenoid metabolic process 89
                terpenoid biosynthetic process 18
                  4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process 0
                  GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthetic process 0
                  diterpenoid biosynthetic process + 12
                  farnesyl diphosphate biosynthetic process + 4
                  geranyl diphosphate biosynthetic process 0
                  geranylgeranyl diphosphate biosynthetic process 0
                  monoterpenoid biosynthetic process + 0
                  novofumigatonin biosynthetic process 0
                  paraherquonin biosynthetic process 0
                  phytyl diphosphate biosynthetic process 0
                  polyterpenoid biosynthetic process 0
                  sesquiterpenoid biosynthetic process + 0
                  terpenoid biosynthetic process, mevalonate-dependent + 0
                  terpenoid biosynthetic process, mevalonate-independent + 0
                  tetraterpenoid biosynthetic process + 1
                  triterpenoid biosynthetic process + 1
paths to the root