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ONTOLOGY REPORT - ANNOTATIONS

Term:terpenoid biosynthetic process
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Accession:GO:0016114 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.
Synonyms:exact_synonym: terpenoid anabolism;   terpenoid biosynthesis;   terpenoid formation;   terpenoid synthesis
 xref: Wikipedia:Terpenoid

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9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:11876656) MGI PMID:11876656 NCBI chrNW_004624811:505,297...563,795
Ensembl chrNW_004624811:505,101...563,855 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:11876656) MGI PMID:11876656 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family member A1 acts_upstream_of_or_within ISO (PMID:11876656) MGI PMID:11876656 NCBI chrNW_004624886:2,702,328...2,721,954
Ensembl chrNW_004624886:2,702,960...2,722,357 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624787:6,751,787...6,776,181
Ensembl chrNW_004624787:6,758,478...6,776,238 		JBrowse link
G LOC101707509 cytochrome P450 1A1 ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chrNW_004627988:7...1,323 JBrowse link
farnesyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fdps farnesyl diphosphate synthase involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:8188698 GO_REF:0000118 RGD:2316305 NCBI chrNW_004624885:942,998...949,529
Ensembl chrNW_004624885:943,571...949,528 		JBrowse link
farnesyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624759:11,826,793...11,847,111
Ensembl chrNW_004624759:11,826,876...11,847,111 		JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624772:15,432,612...15,464,343
Ensembl chrNW_004624772:15,432,198...15,467,797 		JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prmt3 protein arginine methyltransferase 3 involved_in ISO (PMID:33495566) UniProt PMID:33495566 NCBI chrNW_004624766:11,669,732...11,797,133
Ensembl chrNW_004624766:11,670,108...11,795,272 		JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh10 retinol dehydrogenase 10 ISO RGD PMID:21138835 RGD:6771354 NCBI chrNW_004624744:17,838,047...17,868,423
Ensembl chrNW_004624744:17,837,609...17,868,431 		JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chrNW_004624811:505,297...563,795
Ensembl chrNW_004624811:505,101...563,855 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 involved_in ISO (PMID:29240402)
(PMID:33565183)		 UniProt
RGD		 PMID:15950969 PMID:21138835 PMID:29240402 PMID:33565183 RGD:6771322 RGD:6771354 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11013254), (PMID:11044606), (PMID:16241904) RGD
MGI
Ensembl		 PMID:11013254 PMID:11044606 PMID:15950969 PMID:16241904 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chrNW_004624768:3,851,361...3,885,609
Ensembl chrNW_004624768:3,851,257...3,885,609 		JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chrNW_004624885:1,862,911...1,867,656
Ensembl chrNW_004624885:1,862,822...1,867,726 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 RGD:6771322 RGD:6771354 NCBI chrNW_004624787:6,751,787...6,776,181
Ensembl chrNW_004624787:6,758,478...6,776,238 		JBrowse link
G Rbp1 retinol binding protein 1 involved_in ISO
IEA		 RGD
InterPro		 PMID:15950969 GO_REF:0000002 RGD:6771322 NCBI chrNW_004624730:16,091,863...16,119,591
Ensembl chrNW_004624730:16,091,863...16,119,591 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) MGI PMID:17473173 NCBI chrNW_004624744:17,838,047...17,868,423
Ensembl chrNW_004624744:17,837,609...17,868,431 		JBrowse link
triterpenoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lss lanosterol synthase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624745:31,301,648...31,325,283
Ensembl chrNW_004624745:31,306,807...31,325,199 		JBrowse link
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpe65 retinoid isomerohydrolase RPE65 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624742:27,302,222...27,319,549
Ensembl chrNW_004624742:27,302,453...27,319,203 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17653
    cellular process 17231
      metabolic process 11016
        biosynthetic process 7930
          lipid biosynthetic process 659
            isoprenoid biosynthetic process 32
              terpenoid biosynthetic process 15
                4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process 0
                GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthetic process 0
                diterpenoid biosynthetic process + 10
                farnesyl diphosphate biosynthetic process + 3
                geranyl diphosphate biosynthetic process 0
                geranylgeranyl diphosphate biosynthetic process 0
                monoterpenoid biosynthetic process + 0
                novofumigatonin biosynthetic process 0
                paraherquonin biosynthetic process 0
                phytyl diphosphate biosynthetic process 0
                polyterpenoid biosynthetic process 0
                sesquiterpenoid biosynthetic process + 0
                terpenoid biosynthetic process, mevalonate-dependent + 0
                terpenoid biosynthetic process, mevalonate-independent + 0
                tetraterpenoid biosynthetic process + 1
                triterpenoid biosynthetic process + 1
Path 2
Term Annotations click to browse term
  biological_process 17653
    cellular process 17231
      metabolic process 11016
        primary metabolic process 9851
          lipid metabolic process 1268
            isoprenoid metabolic process 86
              terpenoid metabolic process 63
                terpenoid biosynthetic process 15
                  4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process 0
                  GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthetic process 0
                  diterpenoid biosynthetic process + 10
                  farnesyl diphosphate biosynthetic process + 3
                  geranyl diphosphate biosynthetic process 0
                  geranylgeranyl diphosphate biosynthetic process 0
                  monoterpenoid biosynthetic process + 0
                  novofumigatonin biosynthetic process 0
                  paraherquonin biosynthetic process 0
                  phytyl diphosphate biosynthetic process 0
                  polyterpenoid biosynthetic process 0
                  sesquiterpenoid biosynthetic process + 0
                  terpenoid biosynthetic process, mevalonate-dependent + 0
                  terpenoid biosynthetic process, mevalonate-independent + 0
                  tetraterpenoid biosynthetic process + 1
                  triterpenoid biosynthetic process + 1
paths to the root