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ONTOLOGY REPORT - ANNOTATIONS

Term:terpenoid biosynthetic process
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Accession:GO:0016114 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.
Synonyms:exact_synonym: terpenoid anabolism;   terpenoid biosynthesis;   terpenoid formation;   terpenoid synthesis
 xref: Wikipedia:Terpenoid


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9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 acts_upstream_of_or_within IDA (PMID:11876656) MGI PMID:11876656 NCBI chr19:20,469,947...20,620,827
Ensembl chr19:20,470,079...20,620,829 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IDA (PMID:11876656) MGI PMID:11876656 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 acts_upstream_of_or_within IDA (PMID:11876656) MGI PMID:11876656 NCBI chr10:21,253,199...21,272,477
Ensembl chr10:21,253,190...21,272,484 		JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 involved_in ISO
IEA		 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD
Ensembl
GO_Central		 PMID:8765131 GO_REF:0000096 GO_REF:0000107 RGD:2306683 NCBI chr 9:57,595,211...57,611,107
Ensembl chr 9:57,595,211...57,611,107 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:69,210,806...69,233,430
Ensembl chr 2:69,210,789...69,234,877 		JBrowse link
G Rdh16 retinol dehydrogenase 16 acts_upstream_of_or_within IDA (PMID:11876656) MGI PMID:11876656 NCBI chr10:127,636,959...127,651,715
Ensembl chr10:127,637,021...127,682,434 		JBrowse link
G Rdh9 retinol dehydrogenase 9 acts_upstream_of_or_within IDA (PMID:11876656) MGI PMID:11876656 NCBI chr10:127,612,274...127,628,566
Ensembl chr10:127,612,255...127,628,566 		JBrowse link
farnesyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fdps farnesyl diphosphate synthetase involved_in ISO
IEA
IBA		 RGD
UniProt
GO_Central		 PMID:8188698 GO_REF:0000033 GO_REF:0000041 GO_REF:0000096 RGD:2316305 NCBI chr 3:89,000,895...89,009,274
Ensembl chr 3:89,000,895...89,009,266 		JBrowse link
G Ggps1 geranylgeranyl diphosphate synthase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr13:14,224,375...14,238,319
Ensembl chr13:14,225,244...14,238,073 		JBrowse link
farnesyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgcs1 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 involved_in IBA
IEA		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr13:120,151,887...120,169,796
Ensembl chr13:120,151,915...120,169,796 		JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 involved_in IBA
IEA		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 3:98,187,747...98,218,054
Ensembl chr 3:98,187,751...98,218,054 		JBrowse link
geranyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fdps farnesyl diphosphate synthetase involved_in IEA UniProt GO_REF:0000041 NCBI chr 3:89,000,895...89,009,274
Ensembl chr 3:89,000,895...89,009,266 		JBrowse link
G Ggps1 geranylgeranyl diphosphate synthase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr13:14,224,375...14,238,319
Ensembl chr13:14,225,244...14,238,073 		JBrowse link
geranylgeranyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ggps1 geranylgeranyl diphosphate synthase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr13:14,224,375...14,238,319
Ensembl chr13:14,225,244...14,238,073 		JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1c18 aldo-keto reductase family 1, member C18 involved_in ISO GO_Central GO_REF:0000119 NCBI chr13:4,182,614...4,200,645
Ensembl chr13:4,182,614...4,200,653 		JBrowse link
G Prmt3 protein arginine N-methyltransferase 3 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 7:49,428,067...49,508,016
Ensembl chr 7:49,428,094...49,508,013 		JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh1 retinol dehydrogenase 1 (all trans) involved_in ISO RGD
GO_Central		 PMID:21138835 GO_REF:0000096 RGD:6771354 NCBI chr10:127,595,595...127,604,168
Ensembl chr10:127,595,590...127,604,166 		JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) involved_in ISO
IEA		 RGD
GO_Central
Ensembl		 PMID:21138835 GO_REF:0000096 GO_REF:0000107 RGD:6771354 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958 		JBrowse link
G Rdh16 retinol dehydrogenase 16 involved_in ISO GO_Central GO_REF:0000096 NCBI chr10:127,636,959...127,651,715
Ensembl chr10:127,637,021...127,682,434 		JBrowse link
G Rdh16f2 RDH16 family member 2 involved_in ISO GO_Central GO_REF:0000096 NCBI chr10:127,702,345...127,713,188
Ensembl chr10:127,702,343...127,713,186 		JBrowse link
G Rdh19 retinol dehydrogenase 19 involved_in ISO GO_Central GO_REF:0000096 NCBI chr10:127,685,797...127,697,045
Ensembl chr10:127,685,797...127,697,045 		JBrowse link
G Rdh9 retinol dehydrogenase 9 involved_in ISO GO_Central GO_REF:0000096 NCBI chr10:127,612,274...127,628,566
Ensembl chr10:127,612,255...127,628,566 		JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 involved_in ISO RGD
GO_Central		 PMID:21138835 GO_REF:0000096 RGD:6771354 NCBI chr19:20,469,947...20,620,827
Ensembl chr19:20,470,079...20,620,829 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 involved_in ISO RGD
GO_Central		 PMID:15950969 PMID:21138835 GO_REF:0000096 GO_REF:0000119 RGD:6771322 RGD:6771354 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 involved_in
acts_upstream_of_or_within		 ISO
IMP
IDA		 (PMID:14623956)
(PMID:11013254), (PMID:11044606), (PMID:16241904)		 RGD
GO_Central
UniProt
MGI		 PMID:11013254 PMID:11044606 PMID:14623956 PMID:15950969 PMID:16241904 More... GO_REF:0000096 GO_REF:0000119 RGD:6771322 RGD:6771354 NCBI chr 7:66,040,640...66,077,225
Ensembl chr 7:66,040,638...66,077,265 		JBrowse link
G Crabp2 cellular retinoic acid binding protein II ISO RGD PMID:15950969 RGD:6771322 NCBI chr 3:87,856,000...87,860,679
Ensembl chr 3:87,855,973...87,860,683 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 involved_in ISO RGD
GO_Central		 PMID:15950969 PMID:21138835 GO_REF:0000096 RGD:6771322 RGD:6771354 NCBI chr 2:69,210,806...69,233,430
Ensembl chr 2:69,210,789...69,234,877 		JBrowse link
G Rbp1 retinol binding protein 1, cellular involved_in ISO
IEA		 RGD
Ensembl		 PMID:15950969 GO_REF:0000107 RGD:6771322 NCBI chr 9:98,305,014...98,328,604
Ensembl chr 9:98,305,014...98,328,628 		JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) acts_upstream_of_or_within IMP (PMID:17473173) MGI PMID:17473173 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958 		JBrowse link
triterpenoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lss lanosterol synthase involved_in IEA InterPro GO_REF:0000002 NCBI chr10:76,367,303...76,392,973
Ensembl chr10:76,367,422...76,392,972 		JBrowse link
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpe65 retinal pigment epithelium 65 involved_in ISO
ISS
IBA		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 3:159,304,712...159,330,944
Ensembl chr 3:159,304,812...159,330,958 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28630
    cellular process 18394
      metabolic process 11634
        biosynthetic process 8318
          lipid biosynthetic process 761
            isoprenoid biosynthetic process 40
              terpenoid biosynthetic process 22
                4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process 0
                GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthetic process 0
                diterpenoid biosynthetic process + 16
                farnesyl diphosphate biosynthetic process + 4
                geranyl diphosphate biosynthetic process 2
                geranylgeranyl diphosphate biosynthetic process 1
                monoterpenoid biosynthetic process + 0
                novofumigatonin biosynthetic process 0
                paraherquonin biosynthetic process 0
                phytyl diphosphate biosynthetic process 0
                polyterpenoid biosynthetic process 0
                sesquiterpenoid biosynthetic process + 0
                terpenoid biosynthetic process, mevalonate-dependent + 0
                terpenoid biosynthetic process, mevalonate-independent + 0
                tetraterpenoid biosynthetic process + 1
                triterpenoid biosynthetic process + 1
Path 2
Term Annotations click to browse term
  biological_process 28630
    cellular process 18394
      metabolic process 11634
        primary metabolic process 10231
          lipid metabolic process 1522
            isoprenoid metabolic process 132
              terpenoid metabolic process 107
                terpenoid biosynthetic process 22
                  4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process 0
                  GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthetic process 0
                  diterpenoid biosynthetic process + 16
                  farnesyl diphosphate biosynthetic process + 4
                  geranyl diphosphate biosynthetic process 2
                  geranylgeranyl diphosphate biosynthetic process 1
                  monoterpenoid biosynthetic process + 0
                  novofumigatonin biosynthetic process 0
                  paraherquonin biosynthetic process 0
                  phytyl diphosphate biosynthetic process 0
                  polyterpenoid biosynthetic process 0
                  sesquiterpenoid biosynthetic process + 0
                  terpenoid biosynthetic process, mevalonate-dependent + 0
                  terpenoid biosynthetic process, mevalonate-independent + 0
                  tetraterpenoid biosynthetic process + 1
                  triterpenoid biosynthetic process + 1
paths to the root