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ONTOLOGY REPORT - ANNOTATIONS

Term:terpenoid biosynthetic process
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Accession:GO:0016114 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.
Synonyms:exact_synonym: terpenoid anabolism;   terpenoid biosynthesis;   terpenoid formation;   terpenoid synthesis
 xref: Wikipedia:Terpenoid


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9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:11876656) MGI PMID:11876656 NCBI chr 9:72,900,671...72,953,053
Ensembl chr 9:72,900,671...73,080,442 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866 		JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:134,917,393...134,950,101
Ensembl chr 6:134,917,393...134,950,115 		JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 involved_in ISO
IEA		 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD
Ensembl		 PMID:8765131 GO_REF:0000107 RGD:2306683 NCBI chr15:74,719,542...74,725,528
Ensembl chr15:74,719,542...74,725,536 		JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in IDA (PMID:11304534) UniProt PMID:11304534 NCBI chr 2:169,067,077...169,096,167
Ensembl chr 2:169,064,789...169,096,167 		JBrowse link
G RDH16 retinol dehydrogenase 16 acts_upstream_of_or_within ISO (PMID:11876656) MGI PMID:11876656 NCBI chr12:56,951,431...56,957,608
Ensembl chr12:56,951,431...56,959,374 		JBrowse link
farnesyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FDPS farnesyl diphosphate synthase involved_in ISO
IBA
IEA		 RGD
GO_Central
UniProt		 PMID:8188698 GO_REF:0000033 GO_REF:0000041 RGD:2316305 NCBI chr 1:155,308,866...155,320,665
Ensembl chr 1:155,308,748...155,320,666 		JBrowse link
G GGPS1 geranylgeranyl diphosphate synthase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr 1:235,327,216...235,344,532
Ensembl chr 1:235,327,350...235,344,532 		JBrowse link
farnesyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 involved_in IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 5:43,287,470...43,313,412
Ensembl chr 5:43,287,470...43,313,512 		JBrowse link
G HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 involved_in IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 1:119,747,996...119,768,932
Ensembl chr 1:119,748,002...119,768,905 		JBrowse link
geranyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FDPS farnesyl diphosphate synthase involved_in IEA UniProt GO_REF:0000041 NCBI chr 1:155,308,866...155,320,665
Ensembl chr 1:155,308,748...155,320,666 		JBrowse link
G GGPS1 geranylgeranyl diphosphate synthase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr 1:235,327,216...235,344,532
Ensembl chr 1:235,327,350...235,344,532 		JBrowse link
geranylgeranyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GGPS1 geranylgeranyl diphosphate synthase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr 1:235,327,216...235,344,532
Ensembl chr 1:235,327,350...235,344,532 		JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1C3 aldo-keto reductase family 1 member C3 involved_in IDA (PMID:21851338) UniProt PMID:21851338 NCBI chr10:5,048,781...5,107,686
Ensembl chr10:5,035,354...5,107,686 		JBrowse link
G PRMT3 protein arginine methyltransferase 3 involved_in IMP (PMID:33495566) UniProt PMID:33495566 NCBI chr11:20,387,716...20,509,338
Ensembl chr11:20,387,558...20,509,338 		JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RDH10 retinol dehydrogenase 10 involved_in ISO
IEA		 RGD
Ensembl		 PMID:21138835 GO_REF:0000107 RGD:6771354 NCBI chr 8:73,294,602...73,325,281
Ensembl chr 8:73,294,602...73,325,281 		JBrowse link
G RDH16 retinol dehydrogenase 16 ISO RGD PMID:21138835 RGD:6771354 NCBI chr12:56,951,431...56,957,608
Ensembl chr12:56,951,431...56,959,374 		JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 9:72,900,671...72,953,053
Ensembl chr 9:72,900,671...73,080,442 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in ISO
IMP
IEA
IDA		 (PMID:33565183)
(PMID:29240402)		 RGD
UniProt
Ensembl		 PMID:15950969 PMID:21138835 PMID:29240402 PMID:33565183 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within
involved_in		 ISO
IEA
IDA		 (PMID:27759097) RGD
Ensembl
UniProt		 PMID:15950969 PMID:21138835 PMID:27759097 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr15:100,879,831...100,916,626
Ensembl chr15:100,861,924...100,916,626 		JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chr 1:156,699,606...156,705,784
Ensembl chr 1:156,699,606...156,705,816 		JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in ISO
IEA		 RGD
Ensembl		 PMID:15950969 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr 2:169,067,077...169,096,167
Ensembl chr 2:169,064,789...169,096,167 		JBrowse link
G RBP1 retinol binding protein 1 involved_in ISO
IEA		 RGD
InterPro		 PMID:15950969 GO_REF:0000002 RGD:6771322 NCBI chr 3:139,517,438...139,539,742
Ensembl chr 3:139,517,434...139,539,829 		JBrowse link
G RDH10 retinol dehydrogenase 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:73,294,602...73,325,281
Ensembl chr 8:73,294,602...73,325,281 		JBrowse link
triterpenoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LSS lanosterol synthase involved_in IEA InterPro GO_REF:0000002 NCBI chr21:46,188,446...46,228,774
Ensembl chr21:46,188,141...46,228,824 		JBrowse link
vitamin A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO1 beta-carotene oxygenase 1 involved_in NAS (PMID:15983114) BHF-UCL PMID:15983114 NCBI chr16:81,238,689...81,291,142
Ensembl chr16:81,238,689...81,291,142 		JBrowse link
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPE65 retinoid isomerohydrolase RPE65 involved_in IDA
IBA		 (PMID:28874556) UniProt
GO_Central		 PMID:28874556 GO_REF:0000033 NCBI chr 1:68,428,822...68,449,954
Ensembl chr 1:68,428,822...68,451,103 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 27210
    cellular process 19786
      metabolic process 13545
        biosynthetic process 10182
          lipid biosynthetic process 815
            isoprenoid biosynthetic process 35
              terpenoid biosynthetic process 19
                4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process 0
                GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthetic process 0
                diterpenoid biosynthetic process + 13
                farnesyl diphosphate biosynthetic process + 4
                geranyl diphosphate biosynthetic process 2
                geranylgeranyl diphosphate biosynthetic process 1
                monoterpenoid biosynthetic process + 0
                novofumigatonin biosynthetic process 0
                paraherquonin biosynthetic process 0
                phytyl diphosphate biosynthetic process 0
                polyterpenoid biosynthetic process 0
                sesquiterpenoid biosynthetic process + 0
                terpenoid biosynthetic process, mevalonate-dependent + 0
                terpenoid biosynthetic process, mevalonate-independent + 0
                tetraterpenoid biosynthetic process + 1
                triterpenoid biosynthetic process + 1
Path 2
Term Annotations click to browse term
  biological_process 27210
    cellular process 19786
      metabolic process 13545
        primary metabolic process 11733
          lipid metabolic process 1523
            isoprenoid metabolic process 133
              terpenoid metabolic process 109
                terpenoid biosynthetic process 19
                  4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process 0
                  GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthetic process 0
                  diterpenoid biosynthetic process + 13
                  farnesyl diphosphate biosynthetic process + 4
                  geranyl diphosphate biosynthetic process 2
                  geranylgeranyl diphosphate biosynthetic process 1
                  monoterpenoid biosynthetic process + 0
                  novofumigatonin biosynthetic process 0
                  paraherquonin biosynthetic process 0
                  phytyl diphosphate biosynthetic process 0
                  polyterpenoid biosynthetic process 0
                  sesquiterpenoid biosynthetic process + 0
                  terpenoid biosynthetic process, mevalonate-dependent + 0
                  terpenoid biosynthetic process, mevalonate-independent + 0
                  tetraterpenoid biosynthetic process + 1
                  triterpenoid biosynthetic process + 1
paths to the root