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ONTOLOGY REPORT - ANNOTATIONS

Term:terpenoid biosynthetic process
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Accession:GO:0016114 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.
Synonyms:exact_synonym: terpenoid anabolism;   terpenoid biosynthesis;   terpenoid formation;   terpenoid synthesis
 xref: Wikipedia:Terpenoid

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9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:11876656) MGI PMID:11876656 NCBI chr12:83,949,529...84,092,452
Ensembl chr12:83,949,399...84,009,003 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr26:25,439,159...25,557,199
Ensembl chr26:25,439,360...25,557,202 		JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:38,489,459...38,521,983
Ensembl chr13:38,490,181...38,522,087 		JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chr26:8,753,236...8,759,378
Ensembl chr26:8,753,327...8,759,384 		JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:54,611,792...54,641,037
Ensembl chr10:54,614,559...54,641,877 		JBrowse link
farnesyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FDPS farnesyl diphosphate synthase ISO RGD PMID:8188698 RGD:2316305 NCBI chr20:8,514,311...8,526,363 JBrowse link
G LOC103231848 farnesyl pyrophosphate synthase-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:41,647,468...41,649,460 JBrowse link
farnesyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 4:42,083,523...42,107,410
Ensembl chr 4:42,080,949...42,107,409 		JBrowse link
G HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr20:14,018,669...14,040,934
Ensembl chr20:14,019,692...14,041,016 		JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1C3 aldo-keto reductase family 1 member C3 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 9:5,248,610...5,263,474 JBrowse link
G PRMT3 protein arginine methyltransferase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:44,486,165...44,621,002
Ensembl chr 1:44,485,880...44,620,936 		JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RDH10 retinol dehydrogenase 10 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 8:68,903,665...68,933,536
Ensembl chr 8:68,904,352...68,933,792 		JBrowse link
G RDH16 retinol dehydrogenase 16 ISO RGD PMID:21138835 RGD:6771354 NCBI chr11:52,826,447...52,854,731
Ensembl chr11:52,848,488...52,854,167 		JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chr12:83,949,529...84,092,452
Ensembl chr12:83,949,399...84,009,003 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in ISO
IEA		 RGD
Ensembl		 PMID:15950969 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr26:25,439,159...25,557,199
Ensembl chr26:25,439,360...25,557,202 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within		 ISO (PMID:27759097)
(PMID:14623956)
(PMID:11013254), (PMID:11044606), (PMID:16241904)		 UniProt
MGI
RGD		 PMID:11013254 PMID:11044606 PMID:14623956 PMID:15950969 PMID:16241904 More... RGD:6771322 RGD:6771354 NCBI chr29:19,347,101...19,383,600 JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within		 IEA Ensembl GO_REF:0000107 Ensembl chr29:19,352,008...19,383,622 JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chr20:7,159,022...7,164,586
Ensembl chr20:7,159,238...7,164,163 		JBrowse link
G DHRS9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 RGD:6771322 RGD:6771354 NCBI chr10:54,611,792...54,641,037
Ensembl chr10:54,614,559...54,641,877 		JBrowse link
G RBP1 retinol binding protein 1 ISO RGD PMID:15950969 RGD:6771322 NCBI chr15:51,011,664...51,033,963 JBrowse link
G RBP1 retinol binding protein 1 involved_in IEA InterPro GO_REF:0000002 Ensembl chr15:51,011,771...51,034,413 JBrowse link
G RDH10 retinol dehydrogenase 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:68,903,665...68,933,536
Ensembl chr 8:68,904,352...68,933,792 		JBrowse link
triterpenoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LSS lanosterol synthase involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:89,809,065...89,846,295
Ensembl chr 2:89,811,698...89,846,242 		JBrowse link
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPE65 retinoid isomerohydrolase RPE65 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:64,662,777...64,684,178
Ensembl chr20:64,664,358...64,683,211 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19829
    cellular process 19347
      metabolic process 13115
        biosynthetic process 9917
          lipid biosynthetic process 699
            isoprenoid biosynthetic process 35
              terpenoid biosynthetic process 20
                4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process 0
                GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthetic process 0
                diterpenoid biosynthetic process + 14
                farnesyl diphosphate biosynthetic process + 4
                geranyl diphosphate biosynthetic process 0
                geranylgeranyl diphosphate biosynthetic process 0
                monoterpenoid biosynthetic process + 0
                novofumigatonin biosynthetic process 0
                paraherquonin biosynthetic process 0
                phytyl diphosphate biosynthetic process 0
                polyterpenoid biosynthetic process 0
                sesquiterpenoid biosynthetic process + 0
                terpenoid biosynthetic process, mevalonate-dependent + 0
                terpenoid biosynthetic process, mevalonate-independent + 0
                tetraterpenoid biosynthetic process + 1
                triterpenoid biosynthetic process + 1
Path 2
Term Annotations click to browse term
  biological_process 19829
    cellular process 19347
      metabolic process 13115
        primary metabolic process 11543
          lipid metabolic process 1335
            isoprenoid metabolic process 114
              terpenoid metabolic process 91
                terpenoid biosynthetic process 20
                  4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process 0
                  GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthetic process 0
                  diterpenoid biosynthetic process + 14
                  farnesyl diphosphate biosynthetic process + 4
                  geranyl diphosphate biosynthetic process 0
                  geranylgeranyl diphosphate biosynthetic process 0
                  monoterpenoid biosynthetic process + 0
                  novofumigatonin biosynthetic process 0
                  paraherquonin biosynthetic process 0
                  phytyl diphosphate biosynthetic process 0
                  polyterpenoid biosynthetic process 0
                  sesquiterpenoid biosynthetic process + 0
                  terpenoid biosynthetic process, mevalonate-dependent + 0
                  terpenoid biosynthetic process, mevalonate-independent + 0
                  tetraterpenoid biosynthetic process + 1
                  triterpenoid biosynthetic process + 1
paths to the root