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ONTOLOGY REPORT - ANNOTATIONS


Term:diterpenoid biosynthetic process
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Accession:GO:0016102 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of diterpenoid compounds, terpenoids with four isoprene units.
Synonyms:exact_synonym: diterpenoid anabolism;   diterpenoid biosynthesis;   diterpenoid formation;   diterpenoid synthesis
 narrow_synonym: diterpene biosynthesis;   diterpene biosynthetic process


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9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chrNW_004936503:8,869,073...8,953,726 JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2662611|PMID:11876656) MGI
Ensembl
PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chrNW_004936471:19,175,997...19,263,335 JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family member A1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2662611|PMID:11876656) MGI
Ensembl
PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chrNW_004936560:2,562,394...2,580,261 JBrowse link
G Dhrs9 dehydrogenase/reductase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:10,465,701...10,487,534 JBrowse link
G LOC101969148 cytochrome P450 1A1 ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chrNW_004936471:33,682,730...33,688,332 JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prmt3 protein arginine methyltransferase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936654:1,336,546...1,464,959 JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101965278 retinol dehydrogenase 16 ISO RGD PMID:21138835 RGD:6771354 NCBI chrNW_004936646:1,195,200...1,200,778 JBrowse link
G Rdh10 retinol dehydrogenase 10 ISO RGD PMID:21138835 RGD:6771354 NCBI chrNW_004936648:2,060,131...2,088,021 JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chrNW_004936503:8,869,073...8,953,726 JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 involved_in ISO
IEA
RGD
Ensembl
PMID:15950969 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chrNW_004936471:19,175,997...19,263,335 JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:1927016|PMID:11044606), (MGI:3055622|PMID:11013254), (MGI:3692370|PMID:16241904) RGD
Ensembl
MGI
PMID:11013254 PMID:11044606 PMID:15950969 PMID:16241904 PMID:21138835 GO_REF:0000107 MGI:1927016 MGI:3055622 MGI:3692370 RGD:6771322 RGD:6771354 NCBI chrNW_004936483:2,930,781...2,967,309 JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chrNW_004936580:5,861,051...5,866,818 JBrowse link
G Dhrs9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 RGD:6771322 RGD:6771354 NCBI chrNW_004936469:10,465,701...10,487,534 JBrowse link
G Rbp1 retinol binding protein 1 involved_in ISO
IEA
RGD
InterPro
PMID:15950969 GO_REF:0000002 RGD:6771322 NCBI chrNW_004936540:1,600,673...1,626,573 JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3709664|PMID:17473173) MGI
InterPro
Ensembl
PMID:17473173 GO_REF:0000002 GO_REF:0000107 MGI:3709664 NCBI chrNW_004936648:2,060,131...2,088,021 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15040
    metabolic process 9484
      cellular metabolic process 7905
        cellular biosynthetic process 4551
          isoprenoid biosynthetic process 29
            terpenoid biosynthetic process 16
              diterpenoid biosynthetic process 11
                5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate biosynthetic process 0
                cis-abienol biosynthetic process 0
                conidiogenone biosynthetic process 0
                copal-8-ol diphosphate(3-) biosynthetic process 0
                diterpene phytoalexin biosynthetic process + 0
                gibberellin biosynthetic process + 0
                paclitaxel biosynthetic process 0
                phytol biosynthetic process + 0
                retinoic acid biosynthetic process + 11
                tuberculosinol biosynthetic process 0
                vitamin A biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 15040
    metabolic process 9484
      primary metabolic process 8554
        lipid metabolic process 1164
          cellular lipid metabolic process 845
            isoprenoid metabolic process 89
              terpenoid metabolic process 70
                diterpenoid metabolic process 62
                  diterpenoid biosynthetic process 11
                    5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate biosynthetic process 0
                    cis-abienol biosynthetic process 0
                    conidiogenone biosynthetic process 0
                    copal-8-ol diphosphate(3-) biosynthetic process 0
                    diterpene phytoalexin biosynthetic process + 0
                    gibberellin biosynthetic process + 0
                    paclitaxel biosynthetic process 0
                    phytol biosynthetic process + 0
                    retinoic acid biosynthetic process + 11
                    tuberculosinol biosynthetic process 0
                    vitamin A biosynthetic process 0
paths to the root