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ONTOLOGY REPORT - ANNOTATIONS


Term:diterpenoid biosynthetic process
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Accession:GO:0016102 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of diterpenoid compounds, terpenoids with four isoprene units.
Synonyms:exact_synonym: diterpenoid anabolism;   diterpenoid biosynthesis;   diterpenoid formation;   diterpenoid synthesis
 narrow_synonym: diterpene biosynthesis;   diterpene biosynthetic process



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9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,299...226,217,308
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2662611|PMID:11876656) Ensembl
Ensembl
MGI
PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2662611|PMID:11876656) Ensembl
Ensembl
MGI
PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chr 1:29,060,682...29,083,815
Ensembl chr 1:29,060,701...29,083,143
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chr 7:58,802,887...58,809,155
Ensembl chr 7:58,802,887...58,809,775
JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:75,507,538...75,533,942
Ensembl chr15:75,507,588...75,534,481
JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1C1 aldo-keto reductase family 1, member C1 involved_in ISO (PMID:21851338) UniProt PMID:21851338 NCBI chr10:65,580,297...65,594,998
Ensembl chr10:65,576,464...65,678,248
JBrowse link
G PRMT3 protein arginine methyltransferase 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:38,884,311...39,032,944
Ensembl chr 2:38,884,362...39,032,996
JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100512656 retinol dehydrogenase 16 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 5:22,277,006...22,285,534
Ensembl chr 5:22,228,057...22,292,434
JBrowse link
G RDH10 retinol dehydrogenase 10 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 4:62,569,877...62,600,981
Ensembl chr 4:62,569,885...62,601,439
JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,299...226,217,308
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in ISO
IEA
RGD
Ensembl
PMID:15950969 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1927016|PMID:11044606), (MGI:3055622|PMID:11013254), (MGI:3692370|PMID:16241904) Ensembl
Ensembl
MGI
RGD
PMID:11013254 PMID:11044606 PMID:15950969 PMID:16241904 PMID:21138835 GO_REF:0000107 MGI:1927016 MGI:3055622 MGI:3692370 RGD:6771322 RGD:6771354 NCBI chr 1:139,451,080...139,491,514
Ensembl chr 1:139,451,049...139,491,511
JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chr 4:93,388,198...93,393,861
Ensembl chr 4:93,388,092...93,394,155
JBrowse link
G DHRS9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 RGD:6771322 RGD:6771354 NCBI chr15:75,507,538...75,533,942
Ensembl chr15:75,507,588...75,534,481
JBrowse link
G NMNAT3 nicotinamide nucleotide adenylyltransferase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr13:80,431,405...80,556,808
Ensembl chr13:80,429,639...80,556,790
JBrowse link
G RBP1 retinol binding protein 1 involved_in IEA
ISO
InterPro
InterPro
RGD
PMID:15950969 GO_REF:0000002 RGD:6771322 NCBI chr13:80,380,958...80,407,328
Ensembl chr13:80,380,962...80,407,458
JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3709664|PMID:17473173) Ensembl
Ensembl
InterPro
MGI
PMID:17473173 GO_REF:0000002 GO_REF:0000107 MGI:3709664 NCBI chr 4:62,569,877...62,600,981
Ensembl chr 4:62,569,885...62,601,439
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17429
    metabolic process 10976
      cellular metabolic process 9231
        cellular biosynthetic process 5339
          isoprenoid biosynthetic process 34
            terpenoid biosynthetic process 19
              diterpenoid biosynthetic process 13
                5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate biosynthetic process 0
                cis-abienol biosynthetic process 0
                conidiogenone biosynthetic process 0
                copal-8-ol diphosphate(3-) biosynthetic process 0
                diterpene phytoalexin biosynthetic process + 0
                gibberellin biosynthetic process + 0
                paclitaxel biosynthetic process 0
                phytol biosynthetic process + 0
                retinoic acid biosynthetic process + 13
                tuberculosinol biosynthetic process 0
                vitamin A biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 17429
    metabolic process 10976
      primary metabolic process 9786
        lipid metabolic process 1316
          cellular lipid metabolic process 979
            isoprenoid metabolic process 104
              terpenoid metabolic process 83
                diterpenoid metabolic process 73
                  diterpenoid biosynthetic process 13
                    5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate biosynthetic process 0
                    cis-abienol biosynthetic process 0
                    conidiogenone biosynthetic process 0
                    copal-8-ol diphosphate(3-) biosynthetic process 0
                    diterpene phytoalexin biosynthetic process + 0
                    gibberellin biosynthetic process + 0
                    paclitaxel biosynthetic process 0
                    phytol biosynthetic process + 0
                    retinoic acid biosynthetic process + 13
                    tuberculosinol biosynthetic process 0
                    vitamin A biosynthetic process 0
paths to the root