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ONTOLOGY REPORT - ANNOTATIONS


Term:diterpenoid biosynthetic process
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Accession:GO:0016102 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of diterpenoid compounds, terpenoids with four isoprene units.
Synonyms:exact_synonym: diterpenoid anabolism;   diterpenoid biosynthesis;   diterpenoid formation;   diterpenoid synthesis
 narrow_synonym: diterpene biosynthesis;   diterpene biosynthetic process



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9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 acts_upstream_of_or_within IDA (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chr19:20,469,947...20,620,827
Ensembl chr19:20,470,079...20,620,829
JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IDA (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 acts_upstream_of_or_within IDA (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chr10:21,253,199...21,272,477
Ensembl chr10:21,253,190...21,272,484
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 involved_in ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD
MGI
PMID:8765131 GO_REF:0000096 MGI:4417868 RGD:2306683 NCBI chr 9:57,595,211...57,611,107
Ensembl chr 9:57,595,211...57,611,107
JBrowse link
G Dhrs9 dehydrogenase/reductase (SDR family) member 9 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:69,210,806...69,233,430
Ensembl chr 2:69,210,789...69,234,877
JBrowse link
G Rdh16 retinol dehydrogenase 16 acts_upstream_of_or_within IDA (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chr10:127,636,959...127,651,715
Ensembl chr10:127,637,021...127,682,434
JBrowse link
G Rdh9 retinol dehydrogenase 9 acts_upstream_of_or_within IDA (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chr10:127,612,274...127,628,566
Ensembl chr10:127,612,255...127,628,566
JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1c14 aldo-keto reductase family 1, member C14 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:4,099,015...4,140,569
Ensembl chr13:4,099,011...4,140,688
JBrowse link
G Akr1c18 aldo-keto reductase family 1, member C18 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:4,182,614...4,200,645
Ensembl chr13:4,182,614...4,200,653
JBrowse link
G Akr1c20 aldo-keto reductase family 1, member C20 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:4,536,855...4,573,353
Ensembl chr13:4,536,848...4,573,344
JBrowse link
G Akr1c6 aldo-keto reductase family 1, member C6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:4,484,310...4,507,529
Ensembl chr13:4,484,305...4,507,876
JBrowse link
G Akr1cl aldo-keto reductase family 1, member C-like involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:65,052,237...65,071,918
Ensembl chr 1:65,051,848...65,071,918
JBrowse link
G Prmt3 protein arginine N-methyltransferase 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:49,428,067...49,508,016
Ensembl chr 7:49,428,094...49,508,013
JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh1 retinol dehydrogenase 1 (all trans) involved_in ISO MGI
RGD
PMID:21138835 GO_REF:0000096 MGI:4417868 RGD:6771354 NCBI chr10:127,595,595...127,604,168
Ensembl chr10:127,595,590...127,604,166
JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) involved_in ISO RGD
MGI
PMID:21138835 GO_REF:0000096 MGI:4417868 RGD:6771354 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
JBrowse link
G Rdh16 retinol dehydrogenase 16 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr10:127,636,959...127,651,715
Ensembl chr10:127,637,021...127,682,434
JBrowse link
G Rdh16f2 RDH16 family member 2 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr10:127,702,345...127,713,188
Ensembl chr10:127,702,343...127,713,186
JBrowse link
G Rdh19 retinol dehydrogenase 19 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr10:127,685,797...127,697,045
Ensembl chr10:127,685,797...127,697,045
JBrowse link
G Rdh9 retinol dehydrogenase 9 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr10:127,612,274...127,628,566
Ensembl chr10:127,612,255...127,628,566
JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 involved_in ISO RGD
MGI
PMID:21138835 GO_REF:0000096 MGI:4417868 RGD:6771354 NCBI chr19:20,469,947...20,620,827
Ensembl chr19:20,470,079...20,620,829
JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 involved_in ISO MGI
RGD
PMID:15950969 PMID:21138835 GO_REF:0000096 MGI:4417868 MGI:4834177 RGD:6771322 RGD:6771354 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
JBrowse link
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 involved_in
acts_upstream_of_or_within
ISO
IMP
IDA
(MGI:3042765|PMID:14623956)
(MGI:1927016|PMID:11044606), (MGI:3055622|PMID:11013254), (MGI:3692370|PMID:16241904)
MGI
RGD
UniProt
PMID:11013254 PMID:11044606 PMID:14623956 PMID:15950969 PMID:16241904 More... GO_REF:0000096 MGI:1927016 MGI:3042765 MGI:3055622 MGI:3692370 MGI:4417868 MGI:4834177 RGD:6771322 RGD:6771354 NCBI chr 7:66,040,640...66,077,225
Ensembl chr 7:66,040,638...66,077,265
JBrowse link
G Crabp2 cellular retinoic acid binding protein II ISO RGD PMID:15950969 RGD:6771322 NCBI chr 3:87,856,000...87,860,679
Ensembl chr 3:87,855,973...87,860,683
JBrowse link
G Dhrs9 dehydrogenase/reductase (SDR family) member 9 involved_in ISO RGD
MGI
PMID:15950969 PMID:21138835 GO_REF:0000096 MGI:4417868 RGD:6771322 RGD:6771354 NCBI chr 2:69,210,806...69,233,430
Ensembl chr 2:69,210,789...69,234,877
JBrowse link
G Rbp1 retinol binding protein 1, cellular involved_in IEA
ISO
UniProt
RGD
PMID:15950969 GO_REF:0000002 MGI:2152098 RGD:6771322 NCBI chr 9:98,305,014...98,328,604
Ensembl chr 9:98,305,014...98,328,628
JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) acts_upstream_of_or_within IMP (MGI:3709664|PMID:17473173) MGI PMID:17473173 MGI:3709664 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28745
    metabolic process 11569
      cellular metabolic process 9667
        cellular biosynthetic process 5669
          isoprenoid biosynthetic process 42
            terpenoid biosynthetic process 25
              diterpenoid biosynthetic process 20
                5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate biosynthetic process 0
                cis-abienol biosynthetic process 0
                conidiogenone biosynthetic process 0
                copal-8-ol diphosphate(3-) biosynthetic process 0
                diterpene phytoalexin biosynthetic process + 0
                gibberellin biosynthetic process + 0
                paclitaxel biosynthetic process 0
                phytol biosynthetic process + 0
                retinoic acid biosynthetic process + 20
                tuberculosinol biosynthetic process 0
                vitamin A biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 28745
    metabolic process 11569
      primary metabolic process 10318
        lipid metabolic process 1491
          cellular lipid metabolic process 1075
            isoprenoid metabolic process 121
              terpenoid metabolic process 98
                diterpenoid metabolic process 87
                  diterpenoid biosynthetic process 20
                    5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate biosynthetic process 0
                    cis-abienol biosynthetic process 0
                    conidiogenone biosynthetic process 0
                    copal-8-ol diphosphate(3-) biosynthetic process 0
                    diterpene phytoalexin biosynthetic process + 0
                    gibberellin biosynthetic process + 0
                    paclitaxel biosynthetic process 0
                    phytol biosynthetic process + 0
                    retinoic acid biosynthetic process + 20
                    tuberculosinol biosynthetic process 0
                    vitamin A biosynthetic process 0
paths to the root