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ONTOLOGY REPORT - ANNOTATIONS


Term:diterpenoid biosynthetic process
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Accession:GO:0016102 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of diterpenoid compounds, terpenoids with four isoprene units.
Synonyms:exact_synonym: diterpenoid anabolism;   diterpenoid biosynthesis;   diterpenoid formation;   diterpenoid synthesis
 narrow_synonym: diterpene biosynthesis;   diterpene biosynthetic process



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9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chr 9:72,900,671...72,953,053
Ensembl chr 9:72,900,671...73,080,442
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2662611|PMID:11876656) Ensembl
MGI
Ensembl
PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2662611|PMID:11876656) MGI
Ensembl
Ensembl
PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chr 6:134,917,393...134,950,101
Ensembl chr 6:134,917,393...134,950,115
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 involved_in IEA
ISO
9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal Ensembl
RGD
Ensembl
PMID:8765131 GO_REF:0000107 RGD:2306683 NCBI chr15:74,719,542...74,725,528
Ensembl chr15:74,719,542...74,725,536
JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in IDA (PMID:11304534) UniProt
UniProt
PMID:11304534 NCBI chr 2:169,067,077...169,096,167
Ensembl chr 2:169,064,789...169,096,167
JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1C3 aldo-keto reductase family 1 member C3 involved_in IDA (PMID:21851338) UniProt
UniProt
PMID:21851338 NCBI chr10:5,048,781...5,107,686
Ensembl chr10:5,035,354...5,107,686
JBrowse link
G PRMT3 protein arginine methyltransferase 3 involved_in IMP (PMID:33495566) UniProt
UniProt
PMID:33495566 NCBI chr11:20,387,716...20,509,338
Ensembl chr11:20,387,558...20,509,338
JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RDH10 retinol dehydrogenase 10 involved_in IEA
ISO
Ensembl
RGD
Ensembl
PMID:21138835 GO_REF:0000107 RGD:6771354 NCBI chr 8:73,294,602...73,325,281
Ensembl chr 8:73,294,602...73,325,281
JBrowse link
G RDH16 retinol dehydrogenase 16 ISO RGD PMID:21138835 RGD:6771354 NCBI chr12:56,951,431...56,957,608
Ensembl chr12:56,951,431...56,959,374
JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 9:72,900,671...72,953,053
Ensembl chr 9:72,900,671...73,080,442
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in IDA
IEA
ISO
(PMID:29240402) UniProt
Ensembl
UniProt
RGD
PMID:15950969 PMID:21138835 PMID:29240402 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within
IDA
IEA
ISO
(PMID:27759097)
(MGI:1927016|PMID:11044606), (MGI:3055622|PMID:11013254), (MGI:3692370|PMID:16241904)
UniProt
UniProt
Ensembl
MGI
RGD
PMID:11013254 PMID:11044606 PMID:15950969 PMID:16241904 PMID:21138835 More... GO_REF:0000107 MGI:1927016 MGI:3055622 MGI:3692370 RGD:6771322 RGD:6771354 NCBI chr15:100,879,831...100,916,626
Ensembl chr15:100,877,714...100,916,626
JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 involved_in ISO
IEA
RGD
Ensembl
Ensembl
PMID:15950969 GO_REF:0000107 RGD:6771322 NCBI chr 1:156,699,606...156,705,784
Ensembl chr 1:156,699,606...156,705,816
JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in ISO
IEA
RGD
Ensembl
PMID:15950969 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr 2:169,067,077...169,096,167
Ensembl chr 2:169,064,789...169,096,167
JBrowse link
G RBP1 retinol binding protein 1 involved_in IEA
ISO
InterPro
InterPro
Ensembl
Ensembl
RGD
PMID:15950969 GO_REF:0000002 GO_REF:0000107 RGD:6771322 NCBI chr 3:139,517,438...139,539,742
Ensembl chr 3:139,517,434...139,539,829
JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3709664|PMID:17473173) InterPro
InterPro
Ensembl
MGI
Ensembl
PMID:17473173 GO_REF:0000002 GO_REF:0000107 MGI:3709664 NCBI chr 8:73,294,602...73,325,281
Ensembl chr 8:73,294,602...73,325,281
JBrowse link
vitamin A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO1 beta-carotene oxygenase 1 involved_in NAS (PMID:15983114) BHF-UCL
BHF-UCL
PMID:15983114 NCBI chr16:81,238,689...81,291,142
Ensembl chr16:81,238,689...81,291,142
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19751
    metabolic process 13170
      cellular metabolic process 10979
        cellular biosynthetic process 6261
          isoprenoid biosynthetic process 34
            terpenoid biosynthetic process 19
              diterpenoid biosynthetic process 13
                5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate biosynthetic process 0
                cis-abienol biosynthetic process 0
                conidiogenone biosynthetic process 0
                copal-8-ol diphosphate(3-) biosynthetic process 0
                diterpene phytoalexin biosynthetic process + 0
                gibberellin biosynthetic process + 0
                paclitaxel biosynthetic process 0
                phytol biosynthetic process + 0
                retinoic acid biosynthetic process + 12
                tuberculosinol biosynthetic process 0
                vitamin A biosynthetic process 1
Path 2
Term Annotations click to browse term
  biological_process 19751
    metabolic process 13170
      primary metabolic process 11584
        lipid metabolic process 1535
          cellular lipid metabolic process 1102
            isoprenoid metabolic process 135
              terpenoid metabolic process 112
                diterpenoid metabolic process 101
                  diterpenoid biosynthetic process 13
                    5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate biosynthetic process 0
                    cis-abienol biosynthetic process 0
                    conidiogenone biosynthetic process 0
                    copal-8-ol diphosphate(3-) biosynthetic process 0
                    diterpene phytoalexin biosynthetic process + 0
                    gibberellin biosynthetic process + 0
                    paclitaxel biosynthetic process 0
                    phytol biosynthetic process + 0
                    retinoic acid biosynthetic process + 12
                    tuberculosinol biosynthetic process 0
                    vitamin A biosynthetic process 1
paths to the root