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ONTOLOGY REPORT - ANNOTATIONS

Term:rRNA catabolic process
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Accession:GO:0016075 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of rRNA, ribosomal RNA, a structural constituent of ribosomes.
Synonyms:exact_synonym: rRNA breakdown;   rRNA catabolism;   rRNA degradation


show annotations for term's descendants           Sort by:
rRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in IBA
IEA
ISO		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr14:99,314,070...99,337,217
Ensembl chr14:99,312,642...99,337,206 		JBrowse link
G Dis3l DIS3 like exosome 3'-5' exoribonuclease involved_in IBA
IEA
ISO		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr 9:64,214,038...64,248,707
Ensembl chr 9:64,214,038...64,248,570 		JBrowse link
G Ern2 endoplasmic reticulum to nucleus signalling 2 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 7:121,769,116...121,785,454
Ensembl chr 7:121,769,116...121,785,430 		JBrowse link
G Exosc4 exosome component 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:76,211,597...76,214,870
Ensembl chr15:76,211,597...76,214,877 		JBrowse link
G Exosc5 exosome component 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:25,358,578...25,367,457
Ensembl chr 7:25,358,589...25,370,793 		JBrowse link
G Exosc6 exosome component 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:111,782,971...111,784,296
Ensembl chr 8:111,782,971...111,784,296 		JBrowse link
G Exosc7 exosome component 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:122,942,310...122,965,194
Ensembl chr 9:122,942,280...122,965,194 		JBrowse link
G Exosc8 exosome component 8 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:54,636,099...54,642,469
Ensembl chr 3:54,636,099...54,642,814 		JBrowse link
G Exosc9 exosome component 9 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:36,606,755...36,619,876
Ensembl chr 3:36,606,755...36,619,876 		JBrowse link
G Slfn14 schlafen 14 involved_in ISO
IBA
IDA		 (PMID:25996083) GO_Central
UniProt		 PMID:25996083 GO_REF:0000033 GO_REF:0000119 NCBI chr11:83,165,936...83,177,552
Ensembl chr11:83,165,936...83,177,552 		JBrowse link
G Slfn3 schlafen 3 involved_in ISO (PMID:35104454)
(PMID:34272366)		 UniProt PMID:34272366 PMID:35104454 NCBI chr11:83,082,156...83,105,980
Ensembl chr11:83,082,156...83,105,980 		JBrowse link
G Slfn8 schlafen 8 involved_in IDA
ISO		 (PMID:29563550) UniProt
GO_Central		 PMID:29563550 GO_REF:0000096 NCBI chr11:82,892,984...82,911,636
Ensembl chr11:82,892,984...82,911,636 		JBrowse link
G Slfn9 schlafen 9 involved_in ISO GO_Central GO_REF:0000096 NCBI chr11:82,865,142...82,883,041
Ensembl chr11:82,869,216...82,882,656 		JBrowse link
G Trir telomerase RNA component interacting RNase involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 8:85,753,440...85,756,920
Ensembl chr 8:85,753,452...85,756,915 		JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO
IBA		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr 9:95,836,803...95,939,859
Ensembl chr 9:95,836,813...95,939,856 		JBrowse link
nonfunctional rRNA decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pelo pelota mRNA surveillance and ribosome rescue factor involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:115,224,891...115,226,694
Ensembl chr13:115,224,891...115,226,722 		JBrowse link
regulation of rRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx49 DEAD box helicase 49 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 8:70,745,516...70,755,121
Ensembl chr 8:70,745,516...70,755,139 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28635
    cellular process 18389
      metabolic process 11662
        catabolic process 2901
          macromolecule catabolic process 1689
            nucleic acid catabolic process 453
              RNA catabolic process 422
                rRNA catabolic process 17
                  cytoplasmic polyadenylation-dependent rRNA catabolic process 0
                  nonfunctional rRNA decay 1
                  regulation of rRNA catabolic process + 1
Path 2
Term Annotations click to browse term
  biological_process 28635
    cellular process 18389
      metabolic process 11662
        primary metabolic process 10275
          nucleobase-containing compound metabolic process 5755
            nucleic acid metabolic process 5159
              RNA metabolic process 4614
                RNA catabolic process 422
                  rRNA catabolic process 17
                    cytoplasmic polyadenylation-dependent rRNA catabolic process 0
                    nonfunctional rRNA decay 1
                    regulation of rRNA catabolic process + 1
paths to the root