Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:rRNA catabolic process
go back to main search page
Accession:GO:0016075 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of rRNA, ribosomal RNA, a structural constituent of ribosomes.
Synonyms:exact_synonym: rRNA breakdown;   rRNA catabolism;   rRNA degradation


show annotations for term's descendants           Sort by:
rRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DEDD2 death effector domain containing 2 involved_in NAS (PMID:11741985) UniProt PMID:11741985 NCBI chr19:42,198,598...42,220,134
Ensembl chr19:42,198,598...42,220,140 		JBrowse link
G DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in IMP
IBA		 (PMID:20368444) UniProt
GO_Central		 PMID:20368444 GO_REF:0000033 NCBI chr13:72,752,169...72,781,900
Ensembl chr13:72,752,169...72,782,096 		JBrowse link
G DIS3L DIS3 like exosome 3'-5' exoribonuclease involved_in IDA
IBA
IMP		 (PMID:20531389)
(PMID:20368444)		 UniProt
GO_Central		 PMID:20368444 PMID:20531389 GO_REF:0000033 NCBI chr15:66,293,309...66,333,898
Ensembl chr15:66,293,217...66,333,898 		JBrowse link
G ERN2 endoplasmic reticulum to nucleus signaling 2 involved_in IDA (PMID:11175748) UniProt PMID:11175748 NCBI chr16:23,690,310...23,713,222
Ensembl chr16:23,690,310...23,713,226 		JBrowse link
G EXOSC4 exosome component 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:144,064,056...144,080,648
Ensembl chr 8:144,078,648...144,080,648 		JBrowse link
G EXOSC5 exosome component 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:41,386,374...41,397,359
Ensembl chr19:41,386,371...41,397,362 		JBrowse link
G EXOSC6 exosome component 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:70,246,778...70,251,940
Ensembl chr16:70,246,778...70,251,940 		JBrowse link
G EXOSC7 exosome component 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:44,976,244...45,012,668
Ensembl chr 3:44,975,241...45,036,066 		JBrowse link
G EXOSC8 exosome component 8 involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:37,000,786...37,009,614
Ensembl chr13:36,998,816...37,025,881 		JBrowse link
G EXOSC9 exosome component 9 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:121,801,323...121,817,021
Ensembl chr 4:121,801,318...121,817,021 		JBrowse link
G SLFN11 schlafen family member 11 involved_in ISO PMID:29563550 UniProt PMID:29563550 RGD:13601999 NCBI chr17:35,350,305...35,373,621
Ensembl chr17:35,350,305...35,373,701 		JBrowse link
G SLFN12 schlafen family member 12 involved_in IDA
IMP		 (PMID:34272366)
(PMID:35104454)		 UniProt PMID:34272366 PMID:35104454 NCBI chr17:35,410,922...35,433,174
Ensembl chr17:35,409,465...35,433,475 		JBrowse link
G SLFN13 schlafen family member 13 involved_in IDA (PMID:29563550) UniProt PMID:29563550 NCBI chr17:35,435,096...35,449,766
Ensembl chr17:35,435,096...35,448,837 		JBrowse link
G SLFN14 schlafen family member 14 involved_in IEA
IBA
IDA		 (PMID:25996083) Ensembl
GO_Central
UniProt		 PMID:25996083 GO_REF:0000033 GO_REF:0000107 NCBI chr17:35,543,985...35,560,819
Ensembl chr17:35,543,985...35,560,819 		JBrowse link
G TRIR telomerase RNA component interacting RNase involved_in IDA (PMID:28322335) UniProt PMID:28322335 NCBI chr19:12,730,640...12,734,684
Ensembl chr19:12,730,640...12,734,684 		JBrowse link
G XRN1 5'-3' exoribonuclease 1 involved_in IMP
IBA		 (PMID:20368444) UniProt
GO_Central		 PMID:20368444 GO_REF:0000033 NCBI chr 3:142,306,610...142,448,037
Ensembl chr 3:142,306,607...142,448,062 		JBrowse link
nonfunctional rRNA decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PELO pelota mRNA surveillance and ribosome rescue factor involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:52,787,916...52,804,044
Ensembl chr 5:52,787,916...52,804,044 		JBrowse link
regulation of rRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX49 DEAD-box helicase 49 involved_in IMP (PMID:29618122) CACAO PMID:29618122 NCBI chr19:18,919,715...18,928,630
Ensembl chr19:18,919,705...18,929,189 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19711
    cellular process 18963
      metabolic process 12918
        catabolic process 3025
          macromolecule catabolic process 1701
            nucleic acid catabolic process 495
              RNA catabolic process 463
                rRNA catabolic process 18
                  cytoplasmic polyadenylation-dependent rRNA catabolic process 0
                  nonfunctional rRNA decay 1
                  regulation of rRNA catabolic process + 1
Path 2
Term Annotations click to browse term
  biological_process 19711
    cellular process 18963
      metabolic process 12918
        primary metabolic process 11235
          nucleobase-containing compound metabolic process 6782
            nucleic acid metabolic process 6165
              RNA metabolic process 5589
                RNA catabolic process 463
                  rRNA catabolic process 18
                    cytoplasmic polyadenylation-dependent rRNA catabolic process 0
                    nonfunctional rRNA decay 1
                    regulation of rRNA catabolic process + 1
paths to the root