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ONTOLOGY REPORT - ANNOTATIONS

Term:rRNA catabolic process
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Accession:GO:0016075 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of rRNA, ribosomal RNA, a structural constituent of ribosomes.
Synonyms:exact_synonym: rRNA breakdown;   rRNA catabolism;   rRNA degradation

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rRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:51,890,033...51,916,628
Ensembl chr 3:51,888,707...51,916,643 		JBrowse link
G DIS3L DIS3 like exosome 3'-5' exoribonuclease involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr26:17,217,316...17,258,356
Ensembl chr26:17,216,558...17,257,942 		JBrowse link
G ERN2 endoplasmic reticulum to nucleus signaling 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:21,408,517...21,446,764
Ensembl chr 5:21,404,770...21,431,962 		JBrowse link
G EXOSC4 exosome component 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:138,290,581...138,292,621
Ensembl chr 8:138,290,705...138,292,570 		JBrowse link
G EXOSC5 exosome component 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:35,705,683...35,717,354
Ensembl chr 6:35,705,177...35,717,398 		JBrowse link
G EXOSC7 exosome component 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:6,452,155...6,485,411
Ensembl chr22:6,452,195...6,485,276 		JBrowse link
G EXOSC8 exosome component 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:15,520,122...15,529,101
Ensembl chr 3:15,519,804...15,529,014 		JBrowse link
G EXOSC9 exosome component 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:69,077,227...69,092,867
Ensembl chr 7:69,077,164...69,092,810 		JBrowse link
G SLFN11 schlafen family member 11 involved_in ISO PMID:29563550 UniProt PMID:29563550 RGD:13601999 NCBI chr16:28,819,647...28,842,121
Ensembl chr16:28,817,666...28,842,065 		JBrowse link
G SLFN12 schlafen family member 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:28,883,628...28,913,393
Ensembl chr16:28,883,886...28,912,880 		JBrowse link
G SLFN13 schlafen family member 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:28,918,638...29,012,930
Ensembl chr16:28,920,243...28,928,978 		JBrowse link
G SLFN14 schlafen family member 14 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:29,024,624...29,036,566
Ensembl chr16:29,025,268...29,033,380 		JBrowse link
G TRIR telomerase RNA component interacting RNase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:11,419,982...11,424,075
Ensembl chr 6:11,419,938...11,424,062 		JBrowse link
G XRN1 5'-3' exoribonuclease 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:48,174,262...48,310,527
Ensembl chr15:48,174,316...48,305,641 		JBrowse link
nonfunctional rRNA decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PELO pelota mRNA surveillance and ribosome rescue factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:49,094,330...49,097,545
Ensembl chr 4:49,094,528...49,100,838 		JBrowse link
regulation of rRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX49 DEAD-box helicase 49 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:17,376,050...17,384,625
Ensembl chr 6:17,376,273...17,384,663 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17043
    cellular process 16562
      metabolic process 10934
        catabolic process 2542
          macromolecule catabolic process 1413
            nucleic acid catabolic process 334
              RNA catabolic process 303
                rRNA catabolic process 16
                  cytoplasmic polyadenylation-dependent rRNA catabolic process 0
                  nonfunctional rRNA decay 1
                  regulation of rRNA catabolic process + 1
Path 2
Term Annotations click to browse term
  biological_process 17043
    cellular process 16562
      metabolic process 10934
        primary metabolic process 9703
          nucleobase-containing compound metabolic process 5446
            nucleic acid metabolic process 4919
              RNA metabolic process 4373
                RNA catabolic process 303
                  rRNA catabolic process 16
                    cytoplasmic polyadenylation-dependent rRNA catabolic process 0
                    nonfunctional rRNA decay 1
                    regulation of rRNA catabolic process + 1
paths to the root