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ONTOLOGY REPORT - ANNOTATIONS

Term:mRNA metabolic process
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Accession:GO:0016071 term browser browse the term
Definition:The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
Synonyms:exact_synonym: mRNA metabolism


show annotations for term's descendants           Sort by:
mRNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn2l ataxin 2-like involved_in ISO (PMID:23209657) RGD PMID:23209657 NCBI chr 1:181,078,293...181,090,079
Ensembl chr 1:181,078,288...181,089,686 		JBrowse link
G Cebpg CCAAT/enhancer binding protein gamma acts_upstream_of_or_within ISO MGI:2177053 (PMID:9494081) RGD PMID:9494081 NCBI chr 1:87,683,060...87,692,772
Ensembl chr 1:87,684,019...87,694,569 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U acts_upstream_of_or_within_positive_effect ISO (PMID:25921091) RGD PMID:25921091 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Mettl8 methyltransferase 8, tRNA N3-cytidine involved_in ISO (PMID:28655767) RGD PMID:28655767 NCBI chr 3:55,731,453...55,863,652
Ensembl chr 3:55,770,167...55,863,676 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:9342333)		 UniProt
RGD		 PMID:9342333 GO_REF:0000024 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISO (PMID:9342333) RGD PMID:9342333 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885 		JBrowse link
G Tbrg4 transforming growth factor beta regulator 4 involved_in ISO
ISS		 (PMID:28335001)
GO_REF:0000024		 RGD
UniProt		 PMID:28335001 GO_REF:0000024 NCBI chr14:81,481,977...81,490,781
Ensembl chr14:81,481,981...81,490,756 		JBrowse link
G Usp25 ubiquitin specific peptidase 25 involved_in ISO MGI:4332130 (PMID:23042150) RGD PMID:23042150 NCBI chr11:15,603,654...15,711,356
Ensembl chr11:15,603,881...15,711,348 		JBrowse link
3'-UTR-mediated mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) RGD PMID:21336257 NCBI chr 1:234,749,138...234,931,219
Ensembl chr 1:234,751,733...234,931,560 		JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO
ISS		 (PMID:26489465)
GO_REF:0000024		 RGD
UniProt		 PMID:26489465 GO_REF:0000024 NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572 		JBrowse link
G Dnd1 DND microRNA-mediated repression inhibitor 1 involved_in ISO (PMID:28297718) RGD PMID:28297718 NCBI chr18:28,378,692...28,381,316
Ensembl chr18:28,378,692...28,381,316 		JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D IMP RGD PMID:20805360 RGD:10042974 NCBI chr14:9,615,375...9,638,975
Ensembl chr14:9,615,479...9,633,786 		JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in ISO
ISS		 (PMID:16126846), (PMID:28275056)
GO_REF:0000024		 RGD
UniProt		 PMID:16126846 PMID:28275056 GO_REF:0000024 NCBI chr 9:1,862,555...1,872,403
Ensembl chr 9:1,862,899...1,872,451 		JBrowse link
G Mov10 Mov10 RNA helicase involved_in ISO (PMID:24726324) RGD PMID:24726324 NCBI chr 2:192,292,041...192,315,142
Ensembl chr 2:192,293,470...192,315,083 		JBrowse link
G Plekhn1 pleckstrin homology domain containing N1 involved_in ISO
IBA		 (PMID:29180010)
(PMID:27616329)
GO_REF:0000033		 RGD
GO_Central		 PMID:27616329 PMID:29180010 GO_REF:0000033 NCBI chr 5:166,805,309...166,813,339
Ensembl chr 5:166,804,837...166,813,155 		JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:24375645) RGD PMID:24375645 NCBI chr17:18,275,681...18,288,231
Ensembl chr17:18,275,688...18,288,102 		JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (PMID:26000482) RGD PMID:26000482 NCBI chr13:73,174,075...73,245,762
Ensembl chr13:73,173,946...73,238,839 		JBrowse link
G Tardbp TAR DNA binding protein involved_in ISO (PMID:28335005) RGD PMID:28335005 NCBI chr 5:159,050,518...159,062,218
Ensembl chr 5:159,051,799...159,062,055 		JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISO (PMID:23125361) RGD PMID:23125361 NCBI chr 8:114,193,439...114,250,807
Ensembl chr 8:114,199,187...114,250,807 		JBrowse link
G Upf1 UPF1, RNA helicase and ATPase involved_in ISO (PMID:24726324) RGD PMID:24726324 NCBI chr16:19,076,594...19,097,365
Ensembl chr16:19,076,322...19,096,568 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISS
ISO
IBA		 GO_REF:0000024
(PMID:19322177), (PMID:23185455), (PMID:26000482), (PMID:26134560)
GO_REF:0000033
(PMID:19909337)		 UniProt
RGD
GO_Central		 PMID:19322177 PMID:19909337 PMID:23185455 PMID:26000482 PMID:26134560 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351 		JBrowse link
G Zc3h12d zinc finger CCCH type containing 12D involved_in IBA
ISO		 GO_REF:0000033
(PMID:26134560)		 GO_Central
RGD		 PMID:26134560 GO_REF:0000033 NCBI chr 1:2,313,110...2,348,820
Ensembl chr 1:2,314,324...2,348,819 		JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO
IEA
ISS		 (PMID:11719186), (PMID:14679154), (PMID:15187101), (PMID:15634918), (PMID:15687258), (PMID:15766526), (PMID:20221403), (PMID:27193233), (PMID:9703499)
(PMID:17288565), (PMID:22701344), (PMID:27193233)
GO_REF:0000104
GO_REF:0000024		 RGD
UniProt		 PMID:9703499 PMID:11719186 PMID:14679154 PMID:15187101 PMID:15634918 More... GO_REF:0000024 GO_REF:0000104 NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564 		JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20622884), (PMID:22701344), (PMID:24700863), (PMID:24733888), (PMID:27102483)
(PMID:12198173), (PMID:15467755), (PMID:15538381), (PMID:15687258), (PMID:18326031), (PMID:19179481), (PMID:24700863), (PMID:25014217), (PMID:25106868), (PMID:26542173)		 UniProt
RGD		 PMID:12198173 PMID:15467755 PMID:15538381 PMID:15687258 PMID:18326031 More... GO_REF:0000024 NCBI chr 6:98,930,705...98,935,748
Ensembl chr 6:98,930,718...98,935,748 		JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 involved_in ISO (PMID:25106868)
(PMID:20622884), (PMID:22701344)		 RGD PMID:20622884 PMID:22701344 PMID:25106868 NCBI chr 6:10,490,032...10,494,073
Ensembl chr 6:10,490,032...10,494,064 		JBrowse link
3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angel2 angel homolog 2 involved_in ISO
IBA		 (PMID:22547059)
GO_REF:0000033		 RGD
GO_Central		 PMID:22547059 GO_REF:0000033 NCBI chr13:102,509,111...102,529,501
Ensembl chr13:102,510,589...102,529,493 		JBrowse link
G Boll boule homolog, RNA binding protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:56,734,890...56,859,917
Ensembl chr 9:56,733,584...56,859,916 		JBrowse link
G Dazl deleted in azoospermia-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:10,695,593...10,712,330
Ensembl chr 9:10,695,592...10,712,323 		JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:27616329)
(PMID:14517288), (PMID:19029303), (PMID:26489465), (PMID:29180010)		 UniProt
RGD		 PMID:14517288 PMID:19029303 PMID:26489465 PMID:27616329 PMID:29180010 GO_REF:0000024 NCBI chr12:2,640,936...2,684,787
Ensembl chr12:2,645,061...2,684,784 		JBrowse link
G Elavl4 ELAV like RNA binding protein 4 involved_in ISO
ISS		 (PMID:12034726)
GO_REF:0000024		 RGD
UniProt		 PMID:12034726 GO_REF:0000024 NCBI chr 5:125,056,848...125,200,543
Ensembl chr 5:125,056,848...125,200,446 		JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 involved_in ISO (PMID:12456657) RGD PMID:12456657 NCBI chr17:6,507,728...6,510,385
Ensembl chr17:6,507,275...6,509,375 		JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C involved_in ISO (PMID:16010978) RGD PMID:16010978 NCBI chr15:24,779,593...24,809,213
Ensembl chr15:24,779,450...24,809,183 		JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 involved_in ISO (PMID:14517288), (PMID:15014438), (PMID:20932473) RGD PMID:14517288 PMID:15014438 PMID:20932473 NCBI chr13:42,513,762...42,560,061
Ensembl chr13:42,513,762...42,560,457 		JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor involved_in ISO (PMID:15294994) RGD PMID:15294994 NCBI chr 8:119,074,439...119,078,508
Ensembl chr 8:119,074,437...119,079,415 		JBrowse link
G Nicol1 NELL2 interacting cell ontogeny regulator 1 involved_in ISO (PMID:38625739) RGD PMID:38625739 NCBI chr14:76,768,145...76,769,661
Ensembl chr14:76,768,146...76,773,575 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 IDA RGD PMID:11696543 RGD:10045987 NCBI chr 7:9,842,574...9,852,332
Ensembl chr 7:9,842,574...9,852,397 		JBrowse link
G Rbm10 RNA binding motif protein 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:19508861)		 Ensembl
RGD		 PMID:19508861 GO_REF:0000107 NCBI chr  X:1,540,399...1,572,571
Ensembl chr  X:1,540,398...1,572,575 		JBrowse link
G Rbm38 RNA binding motif protein 38 involved_in ISO (PMID:17050675) RGD PMID:17050675 NCBI chr 3:161,801,577...161,814,381
Ensembl chr 3:161,801,577...161,814,381 		JBrowse link
G Rbm47 RNA binding motif protein 47 involved_in ISO (PMID:34160127)
(PMID:29844590)		 RGD PMID:29844590 PMID:34160127 NCBI chr14:42,053,290...42,191,572
Ensembl chr14:42,154,142...42,189,431 		JBrowse link
G Tardbp TAR DNA binding protein involved_in ISO (PMID:17481916) RGD PMID:17481916 NCBI chr 5:159,050,518...159,062,218
Ensembl chr 5:159,051,799...159,062,055 		JBrowse link
G Tirap TIR domain containing adaptor protein involved_in ISO (PMID:15294994) RGD PMID:15294994 NCBI chr 8:33,531,724...33,548,508
Ensembl chr 8:33,531,725...33,547,432 		JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO
ISS		 (PMID:15014438)
GO_REF:0000024		 RGD
UniProt		 PMID:15014438 GO_REF:0000024 NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564 		JBrowse link
7-methylguanosine mRNA capping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmtr1 cap methyltransferase 1 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000117
(PMID:20713356), (PMID:21310715)		 UniProt
GO_Central
RGD		 PMID:20713356 PMID:21310715 GO_REF:0000024 GO_REF:0000033 GO_REF:0000117 NCBI chr20:7,722,729...7,782,579
Ensembl chr20:7,709,713...7,766,302 		JBrowse link
G Cmtr2 cap methyltransferase 2 involved_in ISO
IBA		 (PMID:21310715)
GO_REF:0000033		 RGD
GO_Central		 PMID:21310715 GO_REF:0000033 NCBI chr19:38,190,718...38,197,549
Ensembl chr19:38,190,642...38,197,804 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO
IEA
ISS		 (PMID:12434151)
GO_REF:0000043
GO_REF:0000024		 RGD
UniProt		 PMID:12434151 GO_REF:0000024 GO_REF:0000043 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089 		JBrowse link
G Ncbp3 nuclear cap binding subunit 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:57,665,716...57,695,432
Ensembl chr10:57,665,716...57,695,432 		JBrowse link
G Ramac RNA guanine-7 methyltransferase activating subunit involved_in ISO (PMID:22099306) RGD PMID:22099306 NCBI chr 1:135,708,529...135,714,417
Ensembl chr 1:135,708,535...135,722,151 		JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase involved_in ISO
IBA		 (PMID:9473487)
GO_REF:0000033		 RGD
GO_Central		 PMID:9473487 GO_REF:0000033 NCBI chr 5:47,706,929...47,913,297
Ensembl chr 5:47,706,799...47,913,295 		JBrowse link
G Rnmt RNA (guanine-7-) methyltransferase involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
GO_REF:0000043
(PMID:27422871), (PMID:9790902)		 UniProt
GO_Central
Ensembl
RGD		 PMID:9790902 PMID:27422871 GO_REF:0000024 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr18:61,886,230...61,909,775
Ensembl chr18:61,886,292...61,909,775 		JBrowse link
alternative mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001435.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 1:43,640,876...43,641,875 JBrowse link
G AABR07056845.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 7:37,066,520...37,067,514 JBrowse link
G Bcas2 BCAS2, pre-mRNA processing factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:34972250)
GO_REF:0000107		 RGD
Ensembl		 PMID:34972250 GO_REF:0000107 NCBI chr 2:190,692,503...190,700,386
Ensembl chr 2:190,692,461...190,700,389 		JBrowse link
G Cdk13 cyclin-dependent kinase 13 involved_in ISO (PMID:17261272) RGD PMID:17261272 NCBI chr17:47,251,145...47,344,675
Ensembl chr17:47,251,163...47,341,721 		JBrowse link
G Celf4 CUGBP, Elav-like family member 4 acts_upstream_of_or_within ISO (PMID:19720736) RGD PMID:19720736 NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786 		JBrowse link
G Ddx17 DEAD-box helicase 17 involved_in ISO
IBA		 (PMID:24275493), (PMID:24910439)
(PMID:24910439)
GO_REF:0000033		 RGD
GO_Central		 PMID:24275493 PMID:24910439 GO_REF:0000033 NCBI chr 7:111,091,127...111,109,353
Ensembl chr 7:111,089,445...111,109,193 		JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in ISO
IBA		 (PMID:24275493), (PMID:24910439)
(PMID:24910439)
GO_REF:0000033		 RGD
GO_Central		 PMID:24275493 PMID:24910439 GO_REF:0000033 NCBI chr10:91,723,508...91,732,210
Ensembl chr10:91,723,508...91,732,283 		JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:28221134) RGD PMID:28221134 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Esrp1 epithelial splicing regulatory protein 1 acts_upstream_of_or_within ISO MGI:1924661 (PMID:26371508) RGD PMID:26371508 NCBI chr 5:24,427,611...24,482,157
Ensembl chr 5:24,428,717...24,482,062 		JBrowse link
G Esrp2 epithelial splicing regulatory protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1917326 (PMID:26371508)		 Ensembl
RGD		 PMID:26371508 GO_REF:0000107 NCBI chr19:34,034,559...34,041,726
Ensembl chr19:34,034,559...34,041,726 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 acts_upstream_of_or_within ISO (PMID:15798186) RGD PMID:15798186 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M involved_in ISO (PMID:19874820) RGD PMID:19874820 NCBI chr 7:14,438,703...14,476,781
Ensembl chr 7:14,438,688...14,476,762 		JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 acts_upstream_of_or_within ISO MGI:3052922 (PMID:19075228), (PMID:19720736) RGD PMID:19075228 PMID:19720736 NCBI chr 2:144,639,819...144,814,395
Ensembl chr 2:144,670,285...144,814,368 		JBrowse link
G Pqbp1 polyglutamine binding protein 1 involved_in ISO
IBA
ISS		 (PMID:23512658)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:23512658 GO_REF:0000024 GO_REF:0000033 NCBI chr  X:14,603,516...14,608,091
Ensembl chr  X:14,603,539...14,608,087 		JBrowse link
G Puf60 poly-U binding splicing factor 60 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:107,782,799...107,793,759
Ensembl chr 7:107,782,770...107,794,531 		JBrowse link
G Rbm17 RNA binding motif protein 17 involved_in ISO
IBA		 (PMID:17589525)
GO_REF:0000033		 RGD
GO_Central		 PMID:17589525 GO_REF:0000033 NCBI chr17:66,937,140...66,954,034
Ensembl chr17:66,937,140...66,954,014 		JBrowse link
G Rsrc1 arginine and serine rich coiled-coil 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000002
(PMID:15798186)
GO_REF:0000033		 InterPro
RGD
GO_Central		 PMID:15798186 GO_REF:0000002 GO_REF:0000033 NCBI chr 2:151,226,821...151,632,771
Ensembl chr 2:151,231,156...151,632,765 		JBrowse link
G Sfpq splicing factor proline and glutamine rich involved_in ISO
IBA		 (PMID:19874820)
GO_REF:0000033		 RGD
GO_Central		 PMID:19874820 GO_REF:0000033 NCBI chr 5:139,338,034...139,353,476
Ensembl chr 5:139,338,075...139,353,472 		JBrowse link
G Sfswap splicing factor SWAP involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:8940107)		 Ensembl
RGD		 PMID:8940107 GO_REF:0000107 NCBI chr12:27,109,607...27,179,941
Ensembl chr12:27,109,611...27,179,884 		JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in ISO
ISS		 (PMID:15728250)
PMID:15181151		 RGD PMID:15728250 PMID:15181151 RGD:1304333 NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349 		JBrowse link
G Smptb polypyrimidine tract-binding protein IDA RGD PMID:12578833 RGD:1299129 NCBI chr  X:16,609,016...16,610,898
Ensembl chr  X:16,606,597...16,610,874 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in IMP
IBA
ISO		 GO_REF:0000033
(PMID:8940107)		 GO_Central
RGD		 PMID:8940107 PMID:23462647 GO_REF:0000033, RGD:11038736 NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in ISS
ISO		 GO_REF:0000024
(PMID:22767602)		 UniProt
RGD		 PMID:22767602 GO_REF:0000024 NCBI chr 3:151,589,546...151,594,869
Ensembl chr 3:151,589,535...151,594,860 		JBrowse link
G Srsf9 serine and arginine rich splicing factor 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:41,278,225...41,284,502
Ensembl chr12:41,275,687...41,284,499 		JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in ISO (PMID:33230114) RGD PMID:33230114 NCBI chr 4:170,646,042...170,660,291
Ensembl chr 4:170,646,001...170,660,828 		JBrowse link
co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in ISO (PMID:8929409) RGD PMID:8929409 NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:29276085) RGD PMID:29276085 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISO
IEA
ISS		 (PMID:29276085)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:29276085 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:207,167,690...207,191,938
Ensembl chr 1:207,167,859...207,191,905 		JBrowse link
G Cstf3 cleavage stimulation factor subunit 3 involved_in ISO (PMID:7984242) RGD PMID:7984242 NCBI chr 3:90,966,415...91,037,669
Ensembl chr 3:90,966,354...91,042,196 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISO
ISS		 (PMID:29276085)
GO_REF:0000024		 RGD
UniProt		 PMID:29276085 GO_REF:0000024 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682 		JBrowse link
G Papola poly (A) polymerase alpha involved_in ISO (PMID:19224921) RGD PMID:19224921 NCBI chr 6:124,682,015...124,734,706
Ensembl chr 6:124,682,105...124,734,468 		JBrowse link
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase involved_in ISS
ISO		 GO_REF:0000024
(PMID:20861839)		 UniProt
RGD		 PMID:20861839 GO_REF:0000024 NCBI chr 5:166,312,267...166,343,432
Ensembl chr 5:166,313,650...166,343,429 		JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in ISS
ISO		 GO_REF:0000024
(PMID:21102410)		 UniProt
RGD		 PMID:21102410 GO_REF:0000024 NCBI chr 1:205,848,691...205,859,767
Ensembl chr 1:205,848,772...205,859,764 		JBrowse link
CRD-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csde1 cold shock domain containing E1 involved_in ISO
IEA		 (PMID:11051545)
GO_REF:0000107		 RGD
Ensembl		 PMID:11051545 GO_REF:0000107 NCBI chr 2:190,546,015...190,582,787
Ensembl chr 2:190,554,980...190,582,784 		JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:19029303) RGD PMID:19029303 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D involved_in ISO (PMID:11051545) RGD PMID:11051545 NCBI chr14:9,615,375...9,638,975
Ensembl chr14:9,615,479...9,633,786 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA
ISO		 GO_REF:0000107
(PMID:19029303)		 Ensembl
RGD		 PMID:19029303 GO_REF:0000107 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:19029303), (PMID:29476152)		 UniProt
GO_Central
RGD		 PMID:19029303 PMID:29476152 GO_REF:0000024 GO_REF:0000033 NCBI chr10:80,908,300...80,951,097
Ensembl chr10:80,908,076...80,951,129 		JBrowse link
G Igf2bp2 insulin-like growth factor 2 mRNA binding protein 2 involved_in ISO
IBA		 (PMID:29476152)
GO_REF:0000033		 RGD
GO_Central		 PMID:29476152 GO_REF:0000033 NCBI chr11:78,874,402...78,974,392
Ensembl chr11:78,874,414...78,974,377 		JBrowse link
G Igf2bp3 insulin-like growth factor 2 mRNA binding protein 3 involved_in ISO
IBA		 (PMID:29476152)
GO_REF:0000033		 RGD
GO_Central		 PMID:29476152 GO_REF:0000033 NCBI chr 4:78,060,494...78,195,007
Ensembl chr 4:78,060,494...78,194,865 		JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 involved_in ISO (PMID:11051545) RGD PMID:11051545 NCBI chr 7:67,777,438...67,789,731
Ensembl chr 7:67,777,381...67,789,744 		JBrowse link
G Paip1 poly(A) binding protein interacting protein 1 involved_in ISO (PMID:11051545) RGD PMID:11051545 NCBI chr 2:51,523,190...51,550,241
Ensembl chr 2:51,522,921...51,550,241 		JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein involved_in ISO
IBA
IEA		 (PMID:11051545), (PMID:19029303)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:11051545 PMID:19029303 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:89,402,487...89,435,517
Ensembl chr 8:89,402,866...89,435,515 		JBrowse link
G Ybx1 Y box binding protein 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:19029303)		 UniProt
RGD		 PMID:19029303 GO_REF:0000024 NCBI chr 5:132,882,137...132,898,885
Ensembl chr 5:132,882,145...132,898,862 		JBrowse link
cytosolic mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplp1 amyloid beta precursor like protein 1 acts_upstream_of_or_within ISO (PMID:16314516) RGD PMID:16314516 NCBI chr 1:85,696,880...85,707,215
Ensembl chr 1:85,696,882...85,707,155 		JBrowse link
G App amyloid beta precursor protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:16314516)		 Ensembl
RGD		 PMID:16314516 GO_REF:0000107 NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561 		JBrowse link
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like acts_upstream_of_or_within ISO MGI:5437740 (PMID:22621333) RGD PMID:22621333 NCBI chr 3:152,692,825...152,725,997
Ensembl chr 3:152,693,700...152,725,997 		JBrowse link
G Papola poly (A) polymerase alpha acts_upstream_of_or_within ISO (PMID:18084034) RGD PMID:18084034 NCBI chr 6:124,682,015...124,734,706
Ensembl chr 6:124,682,105...124,734,468 		JBrowse link
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in
acts_upstream_of_or_within		 ISO (PMID:31439799)
MGI:109382 (PMID:18625844)		 RGD PMID:18625844 PMID:31439799 NCBI chr16:51,775,416...51,794,581
Ensembl chr16:51,775,412...51,794,576 		JBrowse link
G Dcp1a decapping mRNA 1A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:5,656,960...5,702,151
Ensembl chr16:5,656,773...5,702,140 		JBrowse link
G Dcp1b decapping mRNA 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:152,358,267...152,395,747
Ensembl chr 4:152,358,241...152,397,145 		JBrowse link
G Dcp2 decapping mRNA 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:36,750,732...36,787,067
Ensembl chr18:36,750,732...36,788,557 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033
GO_REF:0000104		 InterPro
GO_Central
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr 8:33,468,669...33,524,407
Ensembl chr 8:33,415,671...33,524,389 		JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:66,277,345...66,288,852
Ensembl chr16:66,277,345...66,288,852 		JBrowse link
G Noct nocturnin acts_upstream_of_or_within ISO MGI:1298230 (PMID:18625844) RGD PMID:18625844 NCBI chr 2:135,271,189...135,291,407
Ensembl chr 2:135,271,189...135,291,400 		JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 acts_upstream_of_or_within ISO (PMID:18625844) RGD PMID:18625844 NCBI chr12:7,476,707...7,595,384
Ensembl chr12:7,476,697...7,599,204 		JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor involved_in ISO
IBA
IEA
ISS		 (PMID:20584987), (PMID:20852261)
GO_REF:0000033
GO_REF:0000002
GO_REF:0000024		 RGD
GO_Central
InterPro
UniProt		 PMID:20584987 PMID:20852261 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:208,831,115...208,862,904
Ensembl chr 1:208,831,115...208,862,857 		JBrowse link
G Patl2 PAT1 homolog 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:109,072,958...109,087,425
Ensembl chr 3:109,075,290...109,083,253 		JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in IEA GO_REF:0000002
GO_REF:0000104		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 8:33,415,666...33,465,319
Ensembl chr 8:33,415,671...33,524,389 		JBrowse link
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcp1a decapping mRNA 1A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:5,656,960...5,702,151
Ensembl chr16:5,656,773...5,702,140 		JBrowse link
G Dcp1b decapping mRNA 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:152,358,267...152,395,747
Ensembl chr 4:152,358,241...152,397,145 		JBrowse link
G Edc3 enhancer of mRNA decapping 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:58,106,147...58,151,685
Ensembl chr 8:58,106,175...58,151,671 		JBrowse link
G Edc4 enhancer of mRNA decapping 4 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr19:33,774,062...33,786,054
Ensembl chr19:33,774,055...33,787,758 		JBrowse link
generation of catalytic spliceosome for first transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC134482366 splicing factor YJU2-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr16:21,108,942...21,109,883 JBrowse link
G Xab2 XPA binding protein 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692 		JBrowse link
G Yju2 YJU2 splicing factor involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 9:789,603...799,505
Ensembl chr 9:789,606...799,496 		JBrowse link
generation of catalytic spliceosome for second transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isy1 ISY1 splicing factor homolog involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188 		JBrowse link
G Prpf18 pre-mRNA processing factor 18 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:73,630,560...73,661,210
Ensembl chr17:73,630,571...73,690,979 		JBrowse link
histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:16086026) RGD PMID:16086026 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr18:36,750,732...36,787,067
Ensembl chr18:36,750,732...36,788,557 		JBrowse link
G Eri1 exoribonuclease 1 NOT|involved_in ISS
ISO		 GO_REF:0000024
(PMID:18172165)		 UniProt
RGD		 PMID:18172165 GO_REF:0000024 NCBI chr16:56,724,101...56,744,228
Ensembl chr16:56,724,115...56,744,226 		JBrowse link
G Exosc10 exosome component 10 involved_in ISO
IBA		 (PMID:18172165)
GO_REF:0000033		 RGD
GO_Central		 PMID:18172165 GO_REF:0000033 NCBI chr 5:158,995,313...159,018,940
Ensembl chr 5:158,995,313...159,018,940 		JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr 7:108,047,831...108,050,573
Ensembl chr 7:108,047,831...108,050,573 		JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr16:66,277,345...66,288,852
Ensembl chr16:66,277,345...66,288,852 		JBrowse link
G Mtpap mitochondrial poly(A) polymerase involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr17:53,320,739...53,341,500
Ensembl chr17:53,320,741...53,341,538 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18172165)		 UniProt
Ensembl
RGD		 PMID:18172165 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537 		JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific NOT|involved_in ISS
ISO		 GO_REF:0000024
(PMID:18172165)		 UniProt
RGD		 PMID:18172165 GO_REF:0000024 NCBI chr 1:205,848,691...205,859,767
Ensembl chr 1:205,848,772...205,859,764 		JBrowse link
G Tut4 terminal uridylyl transferase 4 NOT|involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr 5:123,201,723...123,306,582
Ensembl chr 5:123,203,003...123,306,465 		JBrowse link
G Tut7 terminal uridylyl transferase 7 NOT|involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr17:4,849,287...4,903,542
Ensembl chr17:4,849,283...4,903,169 		JBrowse link
G Upf1 UPF1, RNA helicase and ATPase involved_in ISO (PMID:16086026) RGD PMID:16086026 NCBI chr16:19,076,594...19,097,365
Ensembl chr16:19,076,322...19,096,568 		JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr 8:96,527,871...96,637,385
Ensembl chr 8:96,528,195...96,632,739 		JBrowse link
histone mRNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mblac1 metallo-beta-lactamase domain containing 1 involved_in ISO
ISS		 (PMID:30507380)
GO_REF:0000024		 RGD
UniProt		 PMID:30507380 GO_REF:0000024 NCBI chr12:17,071,465...17,072,736
Ensembl chr12:17,071,465...17,072,735 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:17499042) RGD PMID:17499042 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISO
IEA		 (PMID:17499042)
GO_REF:0000107		 RGD
Ensembl		 PMID:17499042 GO_REF:0000107 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885 		JBrowse link
maternal mRNA clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lsm14b LSM family member 14B involved_in ISO (PMID:37889087) RGD PMID:37889087 NCBI chr 3:167,125,633...167,136,417
Ensembl chr 3:167,125,628...167,136,432 		JBrowse link
miRNA-mediated gene silencing by mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 NOT|involved_in ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:138,722,111...138,757,118
Ensembl chr 5:138,722,111...138,773,546 		JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in ISO
ISS
IEA		 (PMID:15260970), (PMID:17524464), (PMID:18771919)
(PMID:16357216)
GO_REF:0000024
GO_REF:0000104		 RGD
UniProt		 PMID:15260970 PMID:16357216 PMID:17524464 PMID:18771919 GO_REF:0000024 GO_REF:0000104 NCBI chr 7:105,018,202...105,105,118
Ensembl chr 7:105,029,120...105,104,974 		JBrowse link
G Ago3 argonaute RISC catalytic component 3 NOT|involved_in ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230 		JBrowse link
G Ago4 argonaute RISC component 4 NOT|involved_in ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:138,780,446...138,825,898
Ensembl chr 5:138,783,069...138,825,632 		JBrowse link
G Cnot6 CCR4-NOT transcription complex, subunit 6 involved_in ISO
IEA
ISS		 (PMID:20065043)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:20065043 GO_REF:0000024 GO_REF:0000107 NCBI chr10:33,978,785...34,031,025
Ensembl chr10:33,980,831...34,031,025 		JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in ISO (PMID:20065043) RGD PMID:20065043 NCBI chr16:51,775,416...51,794,581
Ensembl chr16:51,775,412...51,794,576 		JBrowse link
G Cnot8 CCR4-NOT transcription complex, subunit 8 involved_in ISO (PMID:20065043) RGD PMID:20065043 NCBI chr10:42,281,614...42,294,740
Ensembl chr10:42,281,722...42,294,730 		JBrowse link
G Mir1 microRNA 1 involved_in ISO (PMID:23499676), (PMID:25802280) RGD PMID:23499676 PMID:25802280 NCBI chr18:1,887,537...1,887,623 JBrowse link
G Mir100 microRNA 100 involved_in ISO (PMID:22684006) RGD PMID:22684006 NCBI chr 8:41,901,225...41,901,304
Ensembl chr 8:41,901,225...41,901,304 		JBrowse link
G Mir106a microRNA 106a involved_in ISO (PMID:22912877), (PMID:26265888), (PMID:27325313) RGD PMID:22912877 PMID:26265888 PMID:27325313 NCBI chr  X:132,422,584...132,422,661
Ensembl chr  X:132,422,584...132,422,661 		JBrowse link
G Mir106b microRNA 106b involved_in ISO (PMID:27325313) RGD PMID:27325313 NCBI chr12:17,043,344...17,043,425
Ensembl chr12:17,043,344...17,043,425 		JBrowse link
G Mir125a microRNA 125a involved_in ISO (PMID:30670152) RGD PMID:30670152 NCBI chr 1:58,677,626...58,677,710
Ensembl chr 1:58,677,626...58,677,710 		JBrowse link
G Mir125b1 microRNA 125b-1 involved_in ISO (PMID:28214897) RGD PMID:28214897 NCBI chr 8:41,952,966...41,953,052
Ensembl chr 8:41,952,966...41,953,052 		JBrowse link
G Mir125b2 microRNA 125b-2 involved_in ISO (PMID:28214897) RGD PMID:28214897 NCBI chr11:16,245,620...16,245,707 JBrowse link
G Mir128-1 microRNA 128-1 involved_in ISO (PMID:33058756) RGD PMID:33058756 NCBI chr13:39,699,449...39,699,530
Ensembl chr13:39,699,449...39,699,530 		JBrowse link
G Mir128-2 microRNA 128-2 involved_in ISO (PMID:33058756) RGD PMID:33058756 NCBI chr 8:112,085,467...112,085,550
Ensembl chr 8:112,085,467...112,085,550 		JBrowse link
G Mir130a microRNA 130a involved_in ISO (PMID:30741461) RGD PMID:30741461 NCBI chr 3:69,822,542...69,822,629
Ensembl chr 3:69,822,542...69,822,629 		JBrowse link
G Mir130b microRNA 130b involved_in ISO (PMID:24040078) RGD PMID:24040078 NCBI chr11:83,880,163...83,880,244
Ensembl chr11:83,880,163...83,880,244 		JBrowse link
G Mir133a1 microRNA 133a-1 involved_in ISO (PMID:32205184) RGD PMID:32205184 NCBI chr18:1,885,082...1,885,168 JBrowse link
G Mir135b microRNA 135b involved_in ISO (PMID:27793001) RGD PMID:27793001 NCBI chr13:43,638,857...43,638,953
Ensembl chr13:43,638,857...43,638,953 		JBrowse link
G Mir137 microRNA 137 involved_in ISO (PMID:23275153) RGD PMID:23275153 NCBI chr 2:206,480,881...206,480,982
Ensembl chr 2:206,480,884...206,480,985 		JBrowse link
G Mir140 microRNA 140 involved_in ISO (PMID:24928442) RGD PMID:24928442 NCBI chr19:35,465,577...35,465,675
Ensembl chr19:35,465,577...35,465,675 		JBrowse link
G Mir142 microRNA 142 involved_in ISO (PMID:24558198), (PMID:26572508), (PMID:31168355) RGD PMID:24558198 PMID:26572508 PMID:31168355 NCBI chr10:72,557,864...72,557,950
Ensembl chr10:72,557,857...72,557,967 		JBrowse link
G Mir145 microRNA 145 involved_in ISO (PMID:25323858), (PMID:25704091), (PMID:29883722) RGD PMID:25323858 PMID:25704091 PMID:29883722 NCBI chr18:55,099,640...55,099,727
Ensembl chr18:55,099,640...55,099,727 		JBrowse link
G Mir146a microRNA 146a involved_in ISO (PMID:30779466) RGD PMID:30779466 NCBI chr10:27,848,516...27,848,610
Ensembl chr10:27,848,516...27,848,610 		JBrowse link
G Mir151 microRNA 151 involved_in ISO (PMID:20305651) RGD PMID:20305651 NCBI chr 7:105,172,377...105,172,473 JBrowse link
G Mir16 microRNA 16 involved_in ISO (PMID:24418124) RGD PMID:24418124 NCBI chr 2:153,245,349...153,245,443
Ensembl chr 2:153,245,349...153,245,443 		JBrowse link
G Mir181a2 microRNA 181a-2 involved_in ISO (PMID:22714950), (PMID:25535255) RGD PMID:22714950 PMID:25535255 NCBI chr 3:22,615,845...22,615,961
Ensembl chr 3:22,615,845...22,615,961 		JBrowse link
G Mir181b1 microRNA 181b-1 involved_in ISO (PMID:25535255) RGD PMID:25535255 NCBI chr13:49,485,688...49,485,797
Ensembl chr13:49,485,688...49,485,797 		JBrowse link
G Mir181b2 microRNA 181b-2 involved_in ISO (PMID:25535255) RGD PMID:25535255 NCBI chr 3:22,616,948...22,617,035
Ensembl chr 3:22,616,948...22,617,035 		JBrowse link
G Mir181c microRNA 181c involved_in ISO (PMID:25535255) RGD PMID:25535255 NCBI chr19:23,983,523...23,983,628
Ensembl chr19:23,983,523...23,983,628 		JBrowse link
G Mir181d microRNA 181d involved_in ISO (PMID:25535255) RGD PMID:25535255 NCBI chr19:23,983,706...23,983,788
Ensembl chr19:23,983,706...23,983,788 		JBrowse link
G Mir185 microRNA 185 involved_in ISO (PMID:23459944), (PMID:23951060), (PMID:26316588), (PMID:29053187) RGD PMID:23459944 PMID:23951060 PMID:26316588 PMID:29053187 NCBI chr11:82,664,716...82,664,795
Ensembl chr11:82,664,716...82,664,795 		JBrowse link
G Mir18a microRNA 18a involved_in ISO (PMID:28131417), (PMID:29988076), (PMID:34937502) RGD PMID:28131417 PMID:29988076 PMID:34937502 NCBI chr15:92,180,765...92,180,860
Ensembl chr15:92,180,765...92,180,860 		JBrowse link
G Mir190b microRNA 190b involved_in ISO (PMID:32039833) RGD PMID:32039833 NCBI chr 2:175,514,800...175,514,877
Ensembl chr 2:175,514,800...175,514,877 		JBrowse link
G Mir191 microRNA 191 involved_in ISO (PMID:31874245) RGD PMID:31874245 NCBI chr 8:109,264,098...109,264,188 JBrowse link
G Mir192 microRNA 192 involved_in ISO (PMID:28483554) RGD PMID:28483554 NCBI chr 1:203,564,946...203,565,055
Ensembl chr 1:203,564,946...203,565,055 		JBrowse link
G Mir193a microRNA 193a involved_in ISO (PMID:29725386) RGD PMID:29725386 NCBI chr10:64,672,343...64,672,454
Ensembl chr10:64,672,343...64,672,454 		JBrowse link
G Mir195 microRNA 195 involved_in ISO (PMID:31921616) RGD PMID:31921616 NCBI chr10:54,951,838...54,951,924
Ensembl chr10:54,951,838...54,951,924 		JBrowse link
G Mir196a microRNA 196a acts_upstream_of_or_within ISO (PMID:15105502), (PMID:15361871) RGD PMID:15105502 PMID:15361871 NCBI chr 7:134,110,400...134,110,509
Ensembl chr 7:134,110,400...134,110,509 		JBrowse link
G Mir196b microRNA 196b acts_upstream_of_or_within ISO (PMID:15105502) RGD PMID:15105502 NCBI chr 4:81,330,487...81,330,571
Ensembl chr 4:81,330,487...81,330,571 		JBrowse link
G Mir196c microRNA 196c acts_upstream_of_or_within ISO (PMID:15105502), (PMID:15361871) RGD PMID:15105502 PMID:15361871 NCBI chr10:81,231,006...81,231,085
Ensembl chr10:81,231,006...81,231,085 		JBrowse link
G Mir19a microRNA 19a involved_in ISO (PMID:27098600), (PMID:29130787) RGD PMID:27098600 PMID:29130787 NCBI chr15:92,180,912...92,180,993
Ensembl chr15:92,180,912...92,180,993 		JBrowse link
G Mir19b1 microRNA 19b-1 involved_in ISO (PMID:27098600) RGD PMID:27098600 NCBI chr15:92,181,214...92,181,300
Ensembl chr15:92,181,214...92,181,300 		JBrowse link
G Mir19b2 microRNA 19b-2 involved_in ISO (PMID:27098600) RGD PMID:27098600 NCBI chr  X:132,422,072...132,422,167
Ensembl chr  X:132,422,072...132,422,167 		JBrowse link
G Mir1b microRNA 1b involved_in ISO (PMID:23499676), (PMID:25802280) RGD PMID:23499676 PMID:25802280 NCBI chr 3:167,487,117...167,487,201
Ensembl chr 3:167,487,117...167,487,201 		JBrowse link
G Mir200b microRNA 200b involved_in ISO (PMID:22522429) RGD PMID:22522429 NCBI chr 5:166,649,272...166,649,366
Ensembl chr 5:166,649,272...166,649,366 		JBrowse link
G Mir200c microRNA 200c involved_in ISO (PMID:22522429) RGD PMID:22522429 NCBI chr 4:157,523,679...157,523,747 JBrowse link
G Mir204 microRNA 204 involved_in ISO (PMID:20056717) RGD PMID:20056717 NCBI chr 1:220,316,931...220,317,040
Ensembl chr 1:220,316,931...220,317,040 		JBrowse link
G Mir206 microRNA 206 involved_in ISO (PMID:23499676) RGD PMID:23499676 NCBI chr 9:23,094,249...23,094,332
Ensembl chr 9:23,094,249...23,094,332 		JBrowse link
G Mir20a microRNA 20a involved_in ISO (PMID:29653364), (PMID:31368162) RGD PMID:29653364 PMID:31368162 NCBI chr15:92,181,084...92,181,168
Ensembl chr15:92,181,084...92,181,168 		JBrowse link
G Mir20b microRNA 20b involved_in ISO (PMID:32336590) RGD PMID:32336590 NCBI chr  X:132,422,211...132,422,282
Ensembl chr  X:132,422,211...132,422,282 		JBrowse link
G Mir210 microRNA 210 involved_in ISO (PMID:29944867) RGD PMID:29944867 NCBI chr 1:196,326,343...196,326,452
Ensembl chr 1:196,326,337...196,326,454 		JBrowse link
G Mir211 microRNA 211 involved_in ISO (PMID:21109473) RGD PMID:21109473 NCBI chr 1:117,777,539...117,777,644
Ensembl chr 1:117,777,539...117,777,644 		JBrowse link
G Mir212 microRNA 212 involved_in ISO (PMID:26693054) RGD PMID:26693054 NCBI chr10:60,023,403...60,023,513
Ensembl chr10:60,023,403...60,023,513 		JBrowse link
G Mir214 microRNA 214 involved_in ISO (PMID:30703347) RGD PMID:30703347 NCBI chr13:74,588,374...74,588,481
Ensembl chr13:74,588,372...74,588,481 		JBrowse link
G Mir223 microRNA 223 involved_in ISO (PMID:23459944), (PMID:30807577), (PMID:34637033) RGD PMID:23459944 PMID:30807577 PMID:34637033 NCBI chr  X:61,141,887...61,141,996
Ensembl chr  X:61,141,887...61,141,996 		JBrowse link
G Mir23a microRNA 23a involved_in ISO (PMID:26400397) RGD PMID:26400397 NCBI chr19:23,954,997...23,955,071
Ensembl chr19:23,954,997...23,955,071 		JBrowse link
G Mir24-2 microRNA 24-2 involved_in ISO (PMID:30378100) RGD PMID:30378100 NCBI chr19:23,954,683...23,954,790
Ensembl chr19:23,954,683...23,954,790 		JBrowse link
G Mir26b microRNA 26b involved_in ISO (PMID:25536365) RGD PMID:25536365 NCBI chr 9:75,976,596...75,976,680
Ensembl chr 9:75,976,596...75,976,680 		JBrowse link
G Mir27a microRNA 27a involved_in ISO (PMID:25915942), (PMID:26400397) RGD PMID:25915942 PMID:26400397 NCBI chr19:23,954,831...23,954,917
Ensembl chr19:23,954,831...23,954,917 		JBrowse link
G Mir27b microRNA 27b involved_in ISO (PMID:30729664) RGD PMID:30729664 NCBI chr17:1,813,427...1,813,523
Ensembl chr17:1,813,426...1,813,529 		JBrowse link
G Mir29b1 microRNA 29b-1 involved_in ISO (PMID:26175849) RGD PMID:26175849 NCBI chr 4:59,650,987...59,651,067
Ensembl chr 4:59,650,986...59,651,067 		JBrowse link
G Mir29b2 microRNA 29b-2 involved_in ISO (PMID:26175849) RGD PMID:26175849 NCBI chr13:106,570,371...106,570,451
Ensembl chr13:106,570,367...106,570,456 		JBrowse link
G Mir30b microRNA 30b involved_in ISO (PMID:23968872) RGD PMID:23968872 NCBI chr 7:100,132,589...100,132,675
Ensembl chr 7:100,132,589...100,132,675 		JBrowse link
G Mir320a microRNA 320a involved_in ISO (PMID:32271402) RGD PMID:32271402 NCBI chr15:45,516,392...45,516,473
Ensembl chr15:45,516,392...45,516,473 		JBrowse link
G Mir322 microRNA 322 involved_in ISO (PMID:29130787) RGD PMID:29130787 NCBI chr  X:132,806,594...132,806,688
Ensembl chr  X:132,806,594...132,806,688 		JBrowse link
G Mir326 microRNA 326 involved_in ISO (PMID:24279830) RGD PMID:24279830 NCBI chr 1:153,854,029...153,854,123
Ensembl chr 1:153,854,029...153,854,123 		JBrowse link
G Mir337 microRNA 337 involved_in ISO (PMID:22723956) RGD PMID:22723956 NCBI chr 6:128,538,903...128,538,999
Ensembl chr 6:128,538,902...128,538,998 		JBrowse link
G Mir340-1 microRNA 340-1 involved_in ISO (PMID:28413603) RGD PMID:28413603 NCBI chr10:34,393,568...34,393,665
Ensembl chr10:34,393,568...34,393,665 		JBrowse link
G Mir342 microRNA 342 involved_in ISO (PMID:23951060) RGD PMID:23951060 NCBI chr 6:127,565,269...127,565,367
Ensembl chr 6:127,565,269...127,565,367 		JBrowse link
G Mir34b microRNA 34b involved_in ISO (PMID:22336710) RGD PMID:22336710 NCBI chr 8:51,410,244...51,410,327
Ensembl chr 8:51,410,244...51,410,327 		JBrowse link
G Mir3582 microRNA 3582 involved_in ISO (PMID:32205184) RGD PMID:32205184 NCBI chr18:1,885,063...1,885,180
Ensembl chr18:1,885,063...1,885,180 		JBrowse link
G Mir365b microRNA 365b involved_in ISO (PMID:30910589) RGD PMID:30910589 NCBI chr10:64,686,255...64,686,340
Ensembl chr10:64,686,252...64,686,351 		JBrowse link
G Mir423 microRNA 423 involved_in ISO (PMID:32264887) RGD PMID:32264887 NCBI chr10:61,914,142...61,914,220
Ensembl chr10:61,914,133...61,914,226 		JBrowse link
G Mir486 microRNA 486 involved_in ISO (PMID:25857263) RGD PMID:25857263
G Mir497 microRNA 497 involved_in ISO (PMID:29969696) RGD PMID:29969696 NCBI chr10:54,951,514...54,951,582
Ensembl chr10:54,951,505...54,951,584 		JBrowse link
G Mir544 microRNA 544 involved_in ISO (PMID:27186677) RGD PMID:27186677 NCBI chr 6:128,743,530...128,743,607
Ensembl chr 6:128,743,530...128,743,607 		JBrowse link
G Mir665 microRNA 665 involved_in ISO (PMID:34454184) RGD PMID:34454184 NCBI chr 6:128,539,440...128,539,533
Ensembl chr 6:128,539,440...128,539,533 		JBrowse link
G Mir708 microRNA 708 involved_in ISO (PMID:26932538) RGD PMID:26932538 NCBI chr 1:150,599,876...150,599,963
Ensembl chr 1:150,599,876...150,599,963 		JBrowse link
G Mir9-3 microRNA 9-3 involved_in ISO (PMID:26315535), (PMID:29584810) RGD PMID:26315535 PMID:29584810 NCBI chr 1:133,440,049...133,440,138 JBrowse link
G Mir93 microRNA 93 involved_in ISO (PMID:24606633), (PMID:28797104) RGD PMID:24606633 PMID:28797104 NCBI chr12:17,043,135...17,043,221
Ensembl chr12:17,043,135...17,043,221 		JBrowse link
G Mir96 microRNA 96 involved_in ISO (PMID:23459944) RGD PMID:23459944 NCBI chr 4:58,788,411...58,788,516
Ensembl chr 4:58,788,411...58,788,516 		JBrowse link
G Mir98 microRNA 98 involved_in ISO (PMID:27860183), (PMID:28251559), (PMID:30195495) RGD PMID:27860183 PMID:28251559 PMID:30195495 NCBI chr  X:20,981,235...20,981,342
Ensembl chr  X:20,981,235...20,981,342 		JBrowse link
G Mirlet7a1 microRNA let-7a-1 involved_in ISO (PMID:17671087), (PMID:30467960) RGD PMID:17671087 PMID:30467960 NCBI chr17:16,113,766...16,113,859
Ensembl chr17:16,113,768...16,113,867 		JBrowse link
G Mirlet7b microRNA let-7b involved_in ISO (PMID:29471394) RGD PMID:29471394 NCBI chr 7:116,804,186...116,804,270
Ensembl chr 7:116,804,186...116,804,270 		JBrowse link
G Mirlet7c1 microRNA let-7c-1 involved_in ISO (PMID:19841744) RGD PMID:19841744 NCBI chr11:16,201,163...16,201,256
Ensembl chr11:16,201,158...16,201,265 		JBrowse link
G Mirlet7c2 microRNA let7c-2 involved_in ISO (PMID:17671087), (PMID:30467960) RGD PMID:17671087 PMID:30467960 NCBI chr 7:116,803,771...116,803,865
Ensembl chr 7:116,803,771...116,803,865 		JBrowse link
G Mov10 Mov10 RNA helicase involved_in ISO (PMID:16289642) RGD PMID:16289642 NCBI chr 2:192,292,041...192,315,142
Ensembl chr 2:192,293,470...192,315,083 		JBrowse link
mitochondrial mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angel2 angel homolog 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:36180430)		 Ensembl
RGD		 PMID:36180430 GO_REF:0000107 NCBI chr13:102,509,111...102,529,501
Ensembl chr13:102,510,589...102,529,493 		JBrowse link
mitochondrial mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde12 phosphodiesterase 12 involved_in IEA
ISO		 GO_REF:0000107
(PMID:21245038), (PMID:21666256)		 Ensembl
RGD		 PMID:21245038 PMID:21666256 GO_REF:0000107 NCBI chr16:1,920,062...1,925,638
Ensembl chr16:1,915,386...1,925,887 		JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO
IBA		 (PMID:20691904)
GO_REF:0000033		 RGD
GO_Central		 PMID:20691904 GO_REF:0000033 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in ISO
ISS		 (PMID:19864255)
GO_REF:0000024		 RGD
UniProt		 PMID:19864255 GO_REF:0000024 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054 		JBrowse link
mitochondrial mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbrg4 transforming growth factor beta regulator 4 involved_in ISS
ISO		 GO_REF:0000024
(PMID:28335001)		 UniProt
RGD		 PMID:28335001 GO_REF:0000024 NCBI chr14:81,481,977...81,490,781
Ensembl chr14:81,481,981...81,490,756 		JBrowse link
mitochondrial mRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19864255)		 UniProt
Ensembl
RGD		 PMID:19864255 GO_REF:0000024 GO_REF:0000107 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054 		JBrowse link
mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21329879)		 UniProt
Ensembl
RGD		 PMID:21329879 GO_REF:0000024 GO_REF:0000107 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656 		JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in ISO (PMID:30507380) RGD PMID:30507380 NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128 		JBrowse link
G Cpsf4 cleavage and polyadenylation specific factor 4 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr12:9,429,765...9,445,586
Ensembl chr12:9,429,523...9,445,586 		JBrowse link
G Cpsf4-ps1 cleavage and polyadenylation specific factor 4, pseudogene 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr  X:15,862,098...15,862,850
Ensembl chr  X:15,861,367...15,863,381 		JBrowse link
G Cpsf4l cleavage and polyadenylation specific factor 4-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr10:98,741,816...98,756,069
Ensembl chr10:98,743,649...98,751,590 		JBrowse link
G Cpsf4l2 cleavage and polyadenylation specific factor 4 like 2 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr12:10,211,744...10,213,512
Ensembl chr12:10,211,798...10,212,670 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:20695905) RGD PMID:20695905 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISO (PMID:20695905) RGD PMID:20695905 NCBI chr 1:207,167,690...207,191,938
Ensembl chr 1:207,167,859...207,191,905 		JBrowse link
G Cstf1 cleavage stimulation factor subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:161,144,522...161,156,294
Ensembl chr 3:161,144,548...161,156,300 		JBrowse link
G Cstf2 cleavage stimulation factor subunit 2 involved_in ISO (PMID:32816001) RGD PMID:32816001 NCBI chr  X:97,253,559...97,279,476
Ensembl chr  X:97,253,586...97,279,476 		JBrowse link
G Cstf2t cleavage stimulation factor subunit 2, tau variant involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:228,952,617...228,956,183
Ensembl chr 1:228,952,504...228,955,873 		JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in ISS
ISO		 GO_REF:0000024
(PMID:21329879)		 UniProt
RGD		 PMID:21329879 GO_REF:0000024 NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983 		JBrowse link
G Mblac1 metallo-beta-lactamase domain containing 1 involved_in ISO (PMID:30507380) RGD PMID:30507380 NCBI chr12:17,071,465...17,072,736
Ensembl chr12:17,071,465...17,072,735 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000002
(PMID:15937220), (PMID:20695905)		 UniProt
InterPro
RGD		 PMID:15937220 PMID:20695905 GO_REF:0000002 GO_REF:0000024 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682 		JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISS
ISO		 GO_REF:0000024
(PMID:21329879)		 UniProt
RGD		 PMID:21329879 GO_REF:0000024 NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237 		JBrowse link
G Papola poly (A) polymerase alpha involved_in ISO (PMID:7590244) RGD PMID:7590244 NCBI chr 6:124,682,015...124,734,706
Ensembl chr 6:124,682,105...124,734,468 		JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:146,694,045...146,724,030
Ensembl chr 1:146,697,646...146,724,124 		JBrowse link
G Rprd1a regulation of nuclear pre-mRNA domain containing 1A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:15,791,418...15,839,338
Ensembl chr18:15,791,418...15,839,338 		JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:146,682,975...146,729,251
Ensembl chr 3:146,682,922...146,786,452 		JBrowse link
G Rprd2 regulation of nuclear pre-mRNA domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:183,311,132...183,367,959
Ensembl chr 2:183,293,114...183,367,407 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:15070731)		 UniProt
Ensembl
RGD		 PMID:15070731 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:28383716) RGD PMID:28383716 NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537 		JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in ISO (PMID:18288197) RGD PMID:18288197 NCBI chr 1:205,848,691...205,859,767
Ensembl chr 1:205,848,772...205,859,764 		JBrowse link
G Wdr33 WD repeat domain 33 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:23,432,233...23,535,460
Ensembl chr18:23,432,191...23,468,597 		JBrowse link
G Zc3h3 zinc finger CCCH type containing 3 acts_upstream_of_or_within ISO (PMID:16115198) RGD PMID:16115198 NCBI chr 7:107,440,694...107,525,451
Ensembl chr 7:107,440,694...107,525,451 		JBrowse link
G Zcchc8 zinc finger CCHC-type containing 8 involved_in ISO (PMID:31488579) RGD PMID:31488579 NCBI chr12:32,869,170...32,892,707
Ensembl chr12:32,869,310...32,891,325 		JBrowse link
mRNA 3'-end processing by stem-loop binding and cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf2 cleavage and polyadenylation specific factor 2 involved_in ISO
IBA		 (PMID:18688255)
GO_REF:0000033		 RGD
GO_Central		 PMID:18688255 GO_REF:0000033 NCBI chr 6:121,123,941...121,152,756
Ensembl chr 6:121,120,569...121,151,921 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in ISO
IBA		 (PMID:18688255)
(PMID:18955505)
GO_REF:0000033		 RGD
GO_Central		 PMID:18688255 PMID:18955505 GO_REF:0000033 NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128 		JBrowse link
G Lsm10 LSM10, U7 small nuclear RNA associated involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:138,365,983...138,375,856
Ensembl chr 5:138,373,119...138,377,505 		JBrowse link
G Lsm11 LSM11, U7 small nuclear RNA associated involved_in ISO
IBA		 (PMID:33230297)
(PMID:12975319)
GO_REF:0000033		 RGD
GO_Central		 PMID:12975319 PMID:33230297 GO_REF:0000033 NCBI chr10:30,367,841...30,385,956
Ensembl chr10:30,370,727...30,385,944 		JBrowse link
G Slbp stem-loop histone mRNA binding protein involved_in IBA
ISO		 GO_REF:0000033
(PMID:19470752)		 GO_Central
RGD		 PMID:19470752 GO_REF:0000033 NCBI chr14:77,071,441...77,081,911
Ensembl chr14:77,071,632...77,081,906 		JBrowse link
G Slbpl stem-loop binding protein like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:26,356,478...26,363,577
Ensembl chr18:26,356,474...26,363,577 		JBrowse link
G Zfp473 zinc finger protein 473 involved_in ISO (PMID:16714279) RGD PMID:16714279 NCBI chr 1:95,222,683...95,243,328
Ensembl chr 1:95,223,433...95,243,325 		JBrowse link
mRNA 3'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isy1 ISY1 splicing factor homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188 		JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in ISO
ISS		 (PMID:15728250)
PMID:15181151		 RGD PMID:15728250 PMID:15181151 RGD:1304333 NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349 		JBrowse link
mRNA 5'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000066758 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr  X:14,995,412...14,996,454 JBrowse link
G LOC120099250 U1 small nuclear ribonucleoprotein C-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr  X:135,673,708...135,678,865
Ensembl chr  X:135,677,760...135,678,704 		JBrowse link
G Prpf39 pre-mRNA processing factor 39 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:83,088,981...83,113,826
Ensembl chr 6:83,088,986...83,113,825 		JBrowse link
G Psip1 PC4 and SRSF1 interacting protein 1 involved_in ISO
IEA
ISS		 (PMID:9885563)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:9885563 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:97,847,010...97,879,280
Ensembl chr 5:97,847,015...97,879,257 		JBrowse link
G Sfswap splicing factor SWAP involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000107
(PMID:8940107)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:8940107 GO_REF:0000033 GO_REF:0000107 NCBI chr12:27,109,607...27,179,941
Ensembl chr12:27,109,611...27,179,884 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in IEA
IBA		 GO_REF:0000104
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000104 NCBI chr20:5,888,453...5,906,638
Ensembl chr20:5,888,453...5,906,638
Ensembl chr10:5,888,453...5,906,638 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO (PMID:8940107), (PMID:9885563) RGD PMID:8940107 PMID:9885563 NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336 		JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 involved_in ISO (PMID:11684676) RGD PMID:11684676 NCBI chr 5:47,606,526...47,631,509
Ensembl chr 5:47,606,285...47,629,778 		JBrowse link
mRNA alternative polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO
IBA		 (PMID:20695905), (PMID:23187700), (PMID:29276085)
GO_REF:0000033		 RGD
GO_Central		 PMID:20695905 PMID:23187700 PMID:29276085 GO_REF:0000033 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISS
IBA
ISO
IEA		 GO_REF:0000024
GO_REF:0000033
(PMID:20695905), (PMID:29276085)
GO_REF:0000107		 UniProt
GO_Central
RGD
Ensembl		 PMID:20695905 PMID:29276085 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:207,167,690...207,191,938
Ensembl chr 1:207,167,859...207,191,905 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17098938), (PMID:20695905), (PMID:23187700), (PMID:29276085)		 UniProt
RGD		 PMID:17098938 PMID:20695905 PMID:23187700 PMID:29276085 GO_REF:0000024 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682 		JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 IMP RGD PMID:34731606 RGD:329845875 NCBI chr 7:108,810,627...109,054,420
Ensembl chr 7:108,810,628...109,054,691 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:29799838)		 Ensembl
RGD		 PMID:29799838 GO_REF:0000107 NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028 		JBrowse link
mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC118772.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr10:68,067,119...68,089,948 JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230 		JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:138,780,446...138,825,898
Ensembl chr 5:138,783,069...138,825,632 		JBrowse link
G Cnot10 CCR4-NOT transcription complex, subunit 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:114,280,486...114,330,110
Ensembl chr 8:114,280,490...114,330,107 		JBrowse link
G Cnot9 CCR4-NOT transcription complex subunit 9 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:76,084,269...76,109,111
Ensembl chr 9:76,084,334...76,109,100 		JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:21070968) RGD PMID:21070968 NCBI chr18:36,750,732...36,787,067
Ensembl chr18:36,750,732...36,788,557 		JBrowse link
G Dis3l DIS3-like exosome 3'-5' exoribonuclease involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:64,803,925...64,840,306
Ensembl chr 8:64,803,927...64,840,165 		JBrowse link
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:87,355,409...87,736,616
Ensembl chr 9:87,356,457...87,736,616 		JBrowse link
G Dxo decapping exoribonuclease involved_in ISO
ISS		 (PMID:29601584)
(PMID:23523372), (PMID:28283058)
GO_REF:0000024		 RGD
UniProt		 PMID:23523372 PMID:28283058 PMID:29601584 GO_REF:0000024 NCBI chr20:3,993,322...3,995,484
Ensembl chr20:3,993,327...3,995,494 		JBrowse link
G Exosc3 exosome component 3 involved_in ISO (PMID:11782436) RGD PMID:11782436 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060 		JBrowse link
G Exosc5 exosome component 5 involved_in ISO (PMID:11782436) RGD PMID:11782436 NCBI chr 1:81,168,128...81,177,266
Ensembl chr 1:81,166,023...81,177,265 		JBrowse link
G Exosc9 exosome component 9 involved_in ISO (PMID:11782436) RGD PMID:11782436 NCBI chr 2:119,416,028...119,426,981
Ensembl chr 2:119,388,715...119,427,051 		JBrowse link
G Gas5 growth arrest specific 5 acts_upstream_of_or_within ISO (PMID:33006314) RGD PMID:33006314 NCBI chr13:73,303,611...73,306,932 JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A involved_in ISO
ISS		 (PMID:10205060)
GO_REF:0000024		 RGD
UniProt		 PMID:10205060 GO_REF:0000024 NCBI chr20:3,870,765...3,873,221
Ensembl chr20:3,856,006...3,873,227 		JBrowse link
G Hspa1b heat shock protein family A (Hsp70) member 1B involved_in ISO
ISS		 (PMID:10205060)
GO_REF:0000024		 RGD
UniProt		 PMID:10205060 GO_REF:0000024 NCBI chr20:3,855,104...3,859,148
Ensembl chr20:3,856,006...3,873,240
Ensembl chr20:3,856,006...3,873,240 		JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:22844247)		 Ensembl
RGD		 PMID:22844247 GO_REF:0000107 NCBI chr 9:1,862,555...1,872,403
Ensembl chr 9:1,862,899...1,872,451 		JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:12515382) RGD PMID:12515382 NCBI chr20:3,843,467...3,847,217
Ensembl chr20:3,843,466...3,847,266 		JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:12515382) RGD PMID:12515382 NCBI chr 4:85,951,073...85,954,289
Ensembl chr 6:104,652,477...104,654,165
Ensembl chr 4:104,652,477...104,654,165 		JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:12515382) RGD PMID:12515382 NCBI chr19:29,098,254...29,112,858
Ensembl chr13:42,114,032...42,116,484
Ensembl chr19:42,114,032...42,116,484 		JBrowse link
G Mettl16 methyltransferase 16, RNA N6-adenosine involved_in ISO (PMID:29262316) RGD PMID:29262316 NCBI chr10:59,640,915...59,697,291
Ensembl chr10:59,640,972...59,687,061 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (PMID:28637692) RGD PMID:28637692 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041 		JBrowse link
G Mir144 microRNA 144 involved_in ISO MGI:3619412|MGI:5562734 (PMID:30971389) RGD PMID:30971389 NCBI chr10:62,961,348...62,961,430
Ensembl chr10:62,961,348...62,961,430 		JBrowse link
G Mir451a microRNA 451a involved_in ISO MGI:2676829|MGI:5562734 (PMID:30971389) RGD PMID:30971389 NCBI chr10:62,961,520...62,961,591
Ensembl chr10:62,961,520...62,961,591 		JBrowse link
G Mirlet7b microRNA let-7b acts_upstream_of_or_within ISO MGI:2676795|MGI:3619050 (PMID:22844247) RGD PMID:22844247 NCBI chr 7:116,804,186...116,804,270
Ensembl chr 7:116,804,186...116,804,270 		JBrowse link
G Mirlet7c1 microRNA let-7c-1 acts_upstream_of_or_within ISO MGI:2676794|MGI:3619050 (PMID:22844247) RGD PMID:22844247 NCBI chr11:16,201,163...16,201,256
Ensembl chr11:16,201,158...16,201,265 		JBrowse link
G Mirlet7c2 microRNA let7c-2 acts_upstream_of_or_within ISO MGI:2676794|MGI:2676795 (PMID:22844247) RGD PMID:22844247 NCBI chr 7:116,803,771...116,803,865
Ensembl chr 7:116,803,771...116,803,865 		JBrowse link
G Nanos2 nanos C2HC-type zinc finger 2 involved_in ISO (PMID:20133598) RGD PMID:20133598 NCBI chr 1:78,635,668...78,637,128
Ensembl chr 1:78,635,668...78,637,128 		JBrowse link
G Nudt12 nudix hydrolase 12 involved_in ISO (PMID:31101919) RGD PMID:31101919 NCBI chr 9:98,741,627...98,755,039
Ensembl chr 9:98,742,360...98,755,039 		JBrowse link
G Nudt16 nudix hydrolase 16 involved_in ISO
IBA		 (PMID:21070968), (PMID:21337011)
GO_REF:0000033		 RGD
GO_Central		 PMID:21070968 PMID:21337011 GO_REF:0000033 NCBI chr 8:105,739,927...105,741,982
Ensembl chr 8:105,739,623...105,741,998 		JBrowse link
G Nudt16l1 nudix hydrolase 16 like 1 NOT|involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:10,636,174...10,638,090
Ensembl chr10:10,636,174...10,688,370 		JBrowse link
G Nudt16l2 nudix hydrolase 16 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:105,754,821...105,756,548
Ensembl chr 8:105,754,844...105,756,518 		JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:12721301), (PMID:16055741) RGD PMID:12721301 PMID:16055741 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
G Rida reactive intermediate imine deaminase A homolog involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:30930054)		 UniProt
GO_Central
Ensembl
RGD		 PMID:30930054 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:65,691,429...65,705,257
Ensembl chr 7:65,691,435...65,705,716 		JBrowse link
G Slfn14 schlafen family member 14 involved_in ISO (PMID:25996083) RGD PMID:25996083 NCBI chr10:68,076,326...68,087,794 JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000104		 GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000104 NCBI chr 4:57,095,205...57,494,501
Ensembl chr 4:57,095,208...57,530,843 		JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein F2 involved_in ISO (PMID:27558897), (PMID:30559377), (PMID:30930054)
(PMID:29855337), (PMID:30065315), (PMID:30150673)		 RGD PMID:27558897 PMID:29855337 PMID:30065315 PMID:30150673 PMID:30559377 More... NCBI chr 5:144,381,426...144,407,126
Ensembl chr 5:144,381,431...144,408,144 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISO (PMID:26000482) RGD PMID:26000482 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351 		JBrowse link
G Zc3h12d zinc finger CCCH type containing 12D acts_upstream_of_or_within ISO MGI:5588370 (PMID:24415781) RGD PMID:24415781 NCBI chr 1:2,313,110...2,348,820
Ensembl chr 1:2,314,324...2,348,819 		JBrowse link
G Zfp36 zinc finger protein 36 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(PMID:10751406), (PMID:11782475)
(PMID:10330172), (PMID:20221403)		 UniProt
RGD		 PMID:10330172 PMID:10751406 PMID:11782475 PMID:20221403 GO_REF:0000024 NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564 		JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 acts_upstream_of_or_within IDA PMID:10751406 MGI PMID:10751406 RGD:1580602 NCBI chr 6:98,930,705...98,935,748
Ensembl chr 6:98,930,718...98,935,748 		JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 involved_in ISO (PMID:34611029)
(PMID:22367205)		 RGD PMID:22367205 PMID:34611029 NCBI chr 6:10,490,032...10,494,073
Ensembl chr 6:10,490,032...10,494,064 		JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 acts_upstream_of_or_within ISO (PMID:1370712) RGD PMID:1370712 NCBI chr 7:89,226,358...89,374,266
Ensembl chr 7:89,226,463...89,374,378 		JBrowse link
mRNA cis splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C3h9orf78 similar to human chromosome 9 open reading frame 78 involved_in ISO (PMID:35241646) RGD PMID:35241646 NCBI chr 3:14,264,262...14,272,552
Ensembl chr 3:14,264,083...14,272,764 		JBrowse link
G Cactin cactin, spliceosome C complex subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:8,391,396...8,397,219
Ensembl chr 7:8,391,397...8,396,829 		JBrowse link
G Clns1a chloride nucleotide-sensitive channel 1A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:152,019,369...152,039,670
Ensembl chr 1:152,019,378...152,039,661 		JBrowse link
G Cwc15 CWC15 spliceosome-associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:11,305,401...11,316,326
Ensembl chr 8:11,305,424...11,316,325
Ensembl chr 2:11,305,424...11,316,325 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in ISS
ISO		 GO_REF:0000024
(PMID:18426921)		 UniProt
RGD		 PMID:18426921 GO_REF:0000024 NCBI chr 8:33,468,669...33,524,407
Ensembl chr 8:33,415,671...33,524,389 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
GO_REF:0000002
(PMID:18426921)		 UniProt
Ensembl
InterPro
RGD		 PMID:18426921 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885 		JBrowse link
G Prpf40a pre-mRNA processing factor 40 homolog A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:37,625,585...37,689,859
Ensembl chr 3:37,627,690...37,690,886 		JBrowse link
G Prpf40b pre-mRNA processing factor 40 homolog B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:130,392,611...130,454,053
Ensembl chr 7:130,432,112...130,454,052 		JBrowse link
G Prpf4b pre-mRNA processing factor 4B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:29,985,343...30,020,285
Ensembl chr17:29,985,343...30,019,625 		JBrowse link
G Rbm17 RNA binding motif protein 17 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr17:66,937,140...66,954,034
Ensembl chr17:66,937,140...66,954,014 		JBrowse link
G Rbm22 RNA binding motif protein 22 involved_in ISO
ISS		 (PMID:22246180)
GO_REF:0000024		 RGD
UniProt		 PMID:22246180 GO_REF:0000024 NCBI chr18:54,013,374...54,024,182
Ensembl chr18:54,013,351...54,024,569 		JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:202,690,472...202,699,136
Ensembl chr 1:202,690,459...202,699,136 		JBrowse link
G Sde2 SDE2 telomere maintenance homolog involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:34365507)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:34365507 GO_REF:0000024 GO_REF:0000107 NCBI chr13:92,578,843...92,595,142
Ensembl chr13:92,578,874...92,595,140 		JBrowse link
G Sf3a1 splicing factor 3A subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:79,031,394...79,052,144
Ensembl chr14:79,031,394...79,052,144 		JBrowse link
G Srsf7 serine and arginine rich splicing factor 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:14,811,775...14,818,968
Ensembl chr 6:14,811,808...14,818,965 		JBrowse link
G Wbp4 WW domain binding protein 4 involved_in ISO
IEA
ISS		 (PMID:19592703)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:19592703 GO_REF:0000024 GO_REF:0000107 NCBI chr15:54,862,700...54,890,668
Ensembl chr15:54,862,843...54,890,647 		JBrowse link
mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh5 alkB homolog 5, RNA demethylase involved_in ISS
ISO		 GO_REF:0000024
(PMID:36859428)
(PMID:34048572), (PMID:37257451)		 UniProt
RGD		 PMID:34048572 PMID:36859428 PMID:37257451 GO_REF:0000024 NCBI chr10:45,344,888...45,366,331
Ensembl chr10:45,343,395...45,366,331 		JBrowse link
G Celf1 CUGBP, Elav-like family member 1 involved_in IDA PMID:30508596 ARUK-UCL PMID:30508596 RGD:38501076 NCBI chr 3:76,924,591...76,999,429
Ensembl chr 3:76,924,613...76,999,426 		JBrowse link
G Cnot6l CCR4-NOT transcription complex, subunit 6-like acts_upstream_of_or_within ISO (PMID:17452450) RGD PMID:17452450 NCBI chr14:13,410,499...13,502,511
Ensembl chr14:13,411,281...13,498,203 		JBrowse link
G Elavl1 ELAV like RNA binding protein 1 IMP RGD PMID:26682942 RGD:329961560 NCBI chr12:2,640,936...2,684,787
Ensembl chr12:2,645,061...2,684,784 		JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in ISO
IEA
ISS		 (PMID:28002401), (PMID:30197295)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:28002401 PMID:30197295 GO_REF:0000024 GO_REF:0000107 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083 		JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:30067974)		 UniProt
Ensembl
RGD		 PMID:30067974 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:116,884,167...116,937,590
Ensembl chr 2:116,884,248...116,937,590 		JBrowse link
G Fxr2 FMR1 autosomal homolog 2 involved_in ISO (PMID:21658585) RGD PMID:21658585 NCBI chr10:54,350,577...54,370,964
Ensembl chr10:54,350,131...54,370,964 		JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 involved_in ISO (PMID:27157137) RGD PMID:27157137 NCBI chr 9:88,001,212...88,127,040
Ensembl chr 9:88,001,301...88,125,715 		JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R IMP RGD PMID:15798208 RGD:9854643 NCBI chr 5:148,542,999...148,574,888
Ensembl chr 5:148,543,044...148,574,867 		JBrowse link
G Mettl14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in ISO (PMID:24394384), (PMID:28965759) RGD PMID:24394384 PMID:28965759 NCBI chr 2:211,530,598...211,546,845
Ensembl chr 2:211,530,602...211,546,821 		JBrowse link
G Mettl16 methyltransferase 16, RNA N6-adenosine involved_in ISO (PMID:29262316) RGD PMID:29262316 NCBI chr10:59,640,915...59,697,291
Ensembl chr10:59,640,972...59,687,061 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (PMID:24394384), (PMID:25456834), (PMID:25569111), (PMID:28637692), (PMID:28792938), (PMID:28965759) RGD PMID:24394384 PMID:25456834 PMID:25569111 PMID:28637692 PMID:28792938 More... NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041 		JBrowse link
G Mir144 microRNA 144 involved_in ISO MGI:3619412|MGI:5562734 (PMID:30971389) RGD PMID:30971389 NCBI chr10:62,961,348...62,961,430
Ensembl chr10:62,961,348...62,961,430 		JBrowse link
G Mir451a microRNA 451a involved_in ISO MGI:2676829|MGI:5562734 (PMID:30971389) RGD PMID:30971389 NCBI chr10:62,961,520...62,961,591
Ensembl chr10:62,961,520...62,961,591 		JBrowse link
G Nanos1 nanos C2HC-type zinc finger 1 involved_in ISO (PMID:24736845) RGD PMID:24736845 NCBI chr 1:259,897,663...259,901,561
Ensembl chr 1:259,897,939...259,898,730 		JBrowse link
G Nanos2 nanos C2HC-type zinc finger 2 involved_in ISO (PMID:24736845) RGD PMID:24736845 NCBI chr 1:78,635,668...78,637,128
Ensembl chr 1:78,635,668...78,637,128 		JBrowse link
G Nanos3 nanos C2HC-type zinc finger 3 involved_in ISO (PMID:24736845) RGD PMID:24736845 NCBI chr19:23,978,465...23,988,933
Ensembl chr19:23,985,504...23,988,932 		JBrowse link
G Pum1 pumilio RNA-binding family member 1 involved_in ISO (PMID:25768905) RGD PMID:25768905 NCBI chr 5:142,836,933...142,954,331
Ensembl chr 5:142,837,127...142,954,039 		JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:29104163) RGD PMID:29104163 NCBI chr17:18,275,681...18,288,231
Ensembl chr17:18,275,688...18,288,102 		JBrowse link
G Rida reactive intermediate imine deaminase A homolog involved_in ISO
IEA
ISS		 (PMID:30930054)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:30930054 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:65,691,429...65,705,257
Ensembl chr 7:65,691,435...65,705,716 		JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:29353861)		 Ensembl
RGD		 PMID:29353861 GO_REF:0000107 NCBI chr18:1,114,532...1,236,345
Ensembl chr18:1,115,905...1,235,571 		JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 involved_in ISO (PMID:29353861) RGD PMID:29353861 NCBI chr 6:39,679,116...39,774,033
Ensembl chr 6:39,679,082...39,774,031 		JBrowse link
G Ythdf1 YTH N6-methyladenosine RNA binding protein F1 involved_in ISO
IBA		 (PMID:32492408)
(PMID:32943573)
GO_REF:0000033		 RGD
GO_Central		 PMID:32492408 PMID:32943573 GO_REF:0000033 NCBI chr 3:168,024,660...168,040,172
Ensembl chr 3:168,024,663...168,040,172 		JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein F2 involved_in ISO
IBA		 (PMID:27558897), (PMID:28106072), (PMID:30559377), (PMID:30930054), (PMID:32169943), (PMID:32492408)
(PMID:29855337), (PMID:30065315), (PMID:30150673), (PMID:31959747), (PMID:32943573)
GO_REF:0000033		 RGD
GO_Central		 PMID:27558897 PMID:28106072 PMID:29855337 PMID:30065315 PMID:30150673 More... GO_REF:0000033 NCBI chr 5:144,381,426...144,407,126
Ensembl chr 5:144,381,431...144,408,144 		JBrowse link
G Ythdf3 YTH N6-methyladenosine RNA binding protein F3 involved_in ISO
IBA		 (PMID:28106072), (PMID:32492408)
(PMID:32943573)
GO_REF:0000033		 RGD
GO_Central		 PMID:28106072 PMID:32492408 PMID:32943573 GO_REF:0000033 NCBI chr 2:98,350,304...98,384,608
Ensembl chr 2:98,350,588...98,384,606 		JBrowse link
mRNA methylguanosine-cap decapping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcp1a decapping mRNA 1A involved_in ISO (PMID:12417715) RGD PMID:12417715 NCBI chr16:5,656,960...5,702,151
Ensembl chr16:5,656,773...5,702,140 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in ISO (PMID:26049109) RGD PMID:26049109 NCBI chr 8:33,468,669...33,524,407
Ensembl chr 8:33,415,671...33,524,389 		JBrowse link
G Nudt12 nudix hydrolase 12 involved_in ISO (PMID:31875550) RGD PMID:31875550 NCBI chr 9:98,741,627...98,755,039
Ensembl chr 9:98,742,360...98,755,039 		JBrowse link
mRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:104663 (PMID:20541607)
(PMID:11134005)		 Ensembl
RGD		 PMID:11134005 PMID:20541607 GO_REF:0000107 NCBI chr 1:229,736,037...229,823,499
Ensembl chr 1:229,736,106...229,824,354 		JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 IDA RGD PMID:14660658 RGD:1358272 NCBI chr20:11,222,569...11,350,854
Ensembl chr20:11,222,583...11,350,852 		JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 acts_upstream_of_or_within
involved_in		 IDA
ISO
IEA		 MGI:2157186|MGI:2157378|MGI:3664540 (PMID:10403781), (PMID:8626621), (PMID:8692961), (PMID:9240444)
GO_REF:0000107
(PMID:11134005)		 RGD
Ensembl		 PMID:8626621 PMID:8692961 PMID:9240444 PMID:10403781 PMID:11134005 More... GO_REF:0000107, RGD:634661 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390 		JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 acts_upstream_of_or_within ISO MGI:2157186 (PMID:8626621) RGD PMID:8626621 NCBI chr 9:12,564,955...12,578,461
Ensembl chr 9:12,564,920...12,578,458 		JBrowse link
G Cmtr1 cap methyltransferase 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr20:7,722,729...7,782,579
Ensembl chr20:7,709,713...7,766,302 		JBrowse link
G Dnajb11 DnaJ heat shock protein family (Hsp40) member B11 acts_upstream_of_or_within ISO (PMID:11584023) RGD PMID:11584023 NCBI chr11:78,151,750...78,168,259
Ensembl chr11:78,150,429...78,180,407 		JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B involved_in ISO (PMID:11134005) RGD PMID:11134005 NCBI chr10:35,857,040...35,862,935
Ensembl chr10:35,857,041...35,863,344 		JBrowse link
G Mettl14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in ISO
IBA		 (PMID:31340148)
GO_REF:0000033
(PMID:27281194), (PMID:27373337), (PMID:27627798)		 RGD
GO_Central		 PMID:27281194 PMID:27373337 PMID:27627798 PMID:31340148 GO_REF:0000033 NCBI chr 2:211,530,598...211,546,845
Ensembl chr 2:211,530,602...211,546,821 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO
IBA		 (PMID:24394384)
GO_REF:0000033
(PMID:27373337), (PMID:27627798)		 RGD
GO_Central		 PMID:24394384 PMID:27373337 PMID:27627798 GO_REF:0000033 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041 		JBrowse link
G Mettl4 methyltransferase 4, N6-adenosine involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:111,440,976...111,523,871
Ensembl chr 9:111,441,027...111,464,749 		JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein involved_in ISO (PMID:11134005) RGD PMID:11134005 NCBI chr 8:89,402,487...89,435,517
Ensembl chr 8:89,402,866...89,435,515 		JBrowse link
G Virma vir like m6A methyltransferase associated involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:24,961,208...25,024,660
Ensembl chr 5:24,960,778...25,023,341 		JBrowse link
G Wtap WT1 associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:47,665,965...47,691,067
Ensembl chr 1:47,665,965...47,691,065 		JBrowse link
mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:229,736,037...229,823,499
Ensembl chr 1:229,736,106...229,824,354 		JBrowse link
G AABR07026797.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr17:733,746...735,096 JBrowse link
G Adar adenosine deaminase, RNA-specific involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282 		JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:11,222,569...11,350,854
Ensembl chr20:11,222,583...11,350,852 		JBrowse link
G Adarb2 adenosine deaminase RNA specific B2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:61,750,437...62,300,984
Ensembl chr17:61,756,067...62,300,831 		JBrowse link
G Akap8l A-kinase anchoring protein 8 like involved_in ISO (PMID:17594903) RGD PMID:17594903 NCBI chr 7:11,332,671...11,362,287
Ensembl chr 7:11,332,672...11,362,275 		JBrowse link
G Alkbh5 alkB homolog 5, RNA demethylase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:45,344,888...45,366,331
Ensembl chr10:45,343,395...45,366,331 		JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390 		JBrowse link
G Apobec4 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:64,887,019...64,895,053
Ensembl chr13:64,887,012...64,895,053 		JBrowse link
G Arglu1 arginine and glutamate rich 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:80,753,300...80,777,350
Ensembl chr16:80,753,315...80,777,349 		JBrowse link
G Arl6ip4 ARF like GTPase 6 interacting protein 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:32,479,623...32,481,768
Ensembl chr12:32,479,625...32,481,799 		JBrowse link
G Arvcf ARVCF, delta catenin family member involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:82,588,137...82,645,832
Ensembl chr11:82,587,881...82,645,805 		JBrowse link
G Brdt bromodomain testis associated involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:2,387,372...2,445,857
Ensembl chr14:2,387,796...2,445,842 		JBrowse link
G C1qbp complement C1q binding protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:55,699,954...55,704,605
Ensembl chr10:55,699,954...55,704,649 		JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689 		JBrowse link
G Casc3 CASC3 exon junction complex subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:83,769,014...83,788,966
Ensembl chr10:83,769,001...83,788,966 		JBrowse link
G Cbll1 Cbl proto-oncogene like 1 involved_in ISO (PMID:29507755) RGD PMID:29507755 NCBI chr 6:48,071,190...48,086,174
Ensembl chr 6:48,071,190...48,086,444 		JBrowse link
G Cdk12 cyclin-dependent kinase 12 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:83,201,177...83,256,906
Ensembl chr10:83,201,211...83,280,888
Ensembl chr10:83,201,211...83,280,888 		JBrowse link
G Celf1 CUGBP, Elav-like family member 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:76,924,591...76,999,429
Ensembl chr 3:76,924,613...76,999,426 		JBrowse link
G Celf2 CUGBP, Elav-like family member 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:70,904,462...71,729,072
Ensembl chr17:71,210,853...71,728,333 		JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 involved_in ISO
IEA		 (PMID:36537238)
GO_REF:0000107		 RGD
Ensembl		 PMID:36537238 GO_REF:0000107 NCBI chr15:24,905,789...24,965,461
Ensembl chr15:24,905,789...24,951,285 		JBrowse link
G Cir1 corepressor interacting with RBPJ, 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:58,158,923...58,188,799
Ensembl chr 3:58,158,951...58,188,789 		JBrowse link
G Clasrp CLK4-associating serine/arginine rich protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:79,232,260...79,256,462
Ensembl chr 1:79,232,261...79,256,354 		JBrowse link
G Cmtr1 cap methyltransferase 1 involved_in ISO
ISS		 (PMID:20713356)
GO_REF:0000024		 RGD
UniProt		 PMID:20713356 GO_REF:0000024 NCBI chr20:7,722,729...7,782,579
Ensembl chr20:7,709,713...7,766,302 		JBrowse link
G Cnot6l CCR4-NOT transcription complex, subunit 6-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:13,410,499...13,502,511
Ensembl chr14:13,411,281...13,498,203 		JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:135,300,048...135,407,688
Ensembl chr 1:135,300,461...135,409,760 		JBrowse link
G Cpsf4 cleavage and polyadenylation specific factor 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:9,429,765...9,445,586
Ensembl chr12:9,429,523...9,445,586 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:14690600) RGD PMID:14690600 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122 		JBrowse link
G Cript CXXC repeat containing interactor of PDZ3 domain involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:7,581,428...7,589,384
Ensembl chr 6:7,580,703...7,589,399 		JBrowse link
G Csdc2 cold shock domain containing C2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:113,451,998...113,466,464
Ensembl chr 7:113,451,998...113,466,463 		JBrowse link
G Ctnnbl1 catenin, beta like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:146,387,940...146,548,987
Ensembl chr 3:146,387,889...146,548,987 		JBrowse link
G Da2-19 uncharacterized LOC302729 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:44,820,693...44,837,935
Ensembl chr  X:44,820,820...44,837,934 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:33,468,669...33,524,407
Ensembl chr 8:33,415,671...33,524,389 		JBrowse link
G Ddx1 DEAD-box helicase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:35,996,469...36,027,340
Ensembl chr 6:35,996,469...36,027,365 		JBrowse link
G Ddx39b DExD-box helicase 39B involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:3,547,702...3,585,064
Ensembl chr20:3,572,056...3,584,996 		JBrowse link
G Dhx15 DEAH-box helicase 15 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:58,787,147...58,825,083
Ensembl chr14:58,787,127...58,825,088 		JBrowse link
G Dus3l dihydrouridine synthase 3-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:1,593,491...1,598,663
Ensembl chr 9:1,594,123...1,598,655 		JBrowse link
G Elavl4 ELAV like RNA binding protein 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:125,056,848...125,200,543
Ensembl chr 5:125,056,848...125,200,446 		JBrowse link
G ENSRNOG00000063288 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr14:32,635,911...32,636,620 JBrowse link
G ENSRNOG00000066763 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 1:7,270,339...7,270,828 JBrowse link
G ENSRNOG00000067088 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr18:78,340,741...78,341,528 JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:176,726,454...176,743,289
Ensembl chr 1:176,726,454...176,743,289 		JBrowse link
G Esrp1 epithelial splicing regulatory protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:24,427,611...24,482,157
Ensembl chr 5:24,428,717...24,482,062 		JBrowse link
G Fblim1 filamin binding LIM protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:153,883,945...153,915,524
Ensembl chr 5:153,883,960...153,913,757 		JBrowse link
G Fip1l1 factor interacting with PAPOLA and CPSF1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:33,615,210...33,675,742
Ensembl chr14:33,617,720...33,675,708 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Gpatch1 G patch domain containing 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:87,925,606...87,974,544
Ensembl chr 1:87,925,618...87,974,544 		JBrowse link
G H2ab3 H2A.B variant histone 3 involved_in ISO (PMID:22795134) RGD PMID:22795134 NCBI chr  X:82,362,531...82,363,105
Ensembl chr  X:82,362,633...82,362,983 		JBrowse link
G Habp4 hyaluronan binding protein 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:934,931...957,604
Ensembl chr17:935,654...957,565 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO (PMID:2557628) RGD PMID:2557628 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249 		JBrowse link
G Hnrnpf heterogeneous nuclear ribonucleoprotein F involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:151,083,262...151,104,464
Ensembl chr 4:151,083,062...151,109,038 		JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:34,692,868...34,702,849
Ensembl chr10:34,693,555...34,702,846 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997 		JBrowse link
G Hnrnpk-ps1 heterogeneous nuclear ribonucleoprotein K, pseudogene 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:91,756,628...91,758,358
Ensembl chr14:91,756,837...91,758,227 		JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:84,098,558...84,111,568
Ensembl chr 1:84,100,879...84,111,553 		JBrowse link
G Hnrnpll heterogeneous nuclear ribonucleoprotein L-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:14,969,953...15,000,574
Ensembl chr 6:14,970,057...14,999,745 		JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:14,438,703...14,476,781
Ensembl chr 7:14,438,688...14,476,762 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259 		JBrowse link
G Iws1 interacts with SUPT6H, CTD assembly factor 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:23,695,496...23,737,363
Ensembl chr18:23,695,425...23,736,172 		JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:102,041,131...102,047,182
Ensembl chr10:102,041,120...102,047,182 		JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:142,051,844...142,089,175
Ensembl chr 5:142,063,570...142,089,180 		JBrowse link
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:34,447,023...34,953,684
Ensembl chr 9:34,447,056...34,915,530 		JBrowse link
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 IDA RGD PMID:11118435 RGD:632715 NCBI chr 7:100,837,707...100,995,644
Ensembl chr 7:100,837,934...100,988,460 		JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:1,862,555...1,872,403
Ensembl chr 9:1,862,899...1,872,451 		JBrowse link
G Larp7 La ribonucleoprotein 7, transcriptional regulator involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:215,997,641...216,012,833
Ensembl chr 2:215,997,649...216,012,865 		JBrowse link
G Lgals3 galectin 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:20,620,083...20,632,019
Ensembl chr15:20,607,692...20,632,025 		JBrowse link
G LOC100359916 heterogeneous nuclear ribonucleoprotein K-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:58,668,326...58,670,222
Ensembl chr 5:58,668,327...58,670,220 		JBrowse link
G LOC100910341 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:11,405,433...11,405,971
Ensembl chr15:11,405,522...11,405,956 		JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr16:66,277,345...66,288,852
Ensembl chr16:66,277,345...66,288,852 		JBrowse link
G Lsm5l1 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:1,339,769...1,340,198
Ensembl chr16:1,339,784...1,340,056
Ensembl chr 6:1,339,784...1,340,056 		JBrowse link
G Magoh mago homolog, exon junction complex subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:122,639,268...122,646,650
Ensembl chr 5:122,639,308...122,646,617 		JBrowse link
G Mbnl2 muscleblind-like splicing regulator 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:97,385,278...97,542,924
Ensembl chr15:97,385,244...97,542,937 		JBrowse link
G Mettl14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in ISO (PMID:24316715), (PMID:27281194), (PMID:27373337), (PMID:27627798)
(PMID:24394384), (PMID:28965759)		 RGD PMID:24316715 PMID:24394384 PMID:27281194 PMID:27373337 PMID:27627798 More... NCBI chr 2:211,530,598...211,546,845
Ensembl chr 2:211,530,602...211,546,821 		JBrowse link
G Mettl16 methyltransferase 16, RNA N6-adenosine involved_in ISO (PMID:30197297), (PMID:30197299), (PMID:33428944)
(PMID:30197299)		 RGD PMID:30197297 PMID:30197299 PMID:33428944 NCBI chr10:59,640,915...59,697,291
Ensembl chr10:59,640,972...59,687,061 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (PMID:22575960), (PMID:24284625), (PMID:24316715), (PMID:25719671), (PMID:27281194), (PMID:27373337), (PMID:27627798), (PMID:28297716)
(PMID:24209618), (PMID:28792938), (PMID:28965759)		 RGD PMID:22575960 PMID:24209618 PMID:24284625 PMID:24316715 PMID:25719671 More... NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041 		JBrowse link
G Myg1 MYG1 exonuclease involved_in ISO
IEA		 (PMID:31081026)
GO_REF:0000107		 RGD
Ensembl		 PMID:31081026 GO_REF:0000107 NCBI chr 7:133,456,778...133,463,985
Ensembl chr 7:133,456,750...133,466,969 		JBrowse link
G Nono non-POU domain containing, octamer-binding involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:66,554,131...66,571,992
Ensembl chr  X:66,554,098...66,571,952 		JBrowse link
G Nova1 NOVA alternative splicing regulator 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:63,780,105...63,905,567
Ensembl chr 6:63,783,489...63,906,289 		JBrowse link
G Nsrp1 nuclear speckle splicing regulatory protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:61,880,807...61,914,471
Ensembl chr10:61,880,825...61,914,471 		JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 involved_in ISO (PMID:22395603), (PMID:28418038), (PMID:31358969)
(PMID:23871666)		 RGD PMID:22395603 PMID:23871666 PMID:28418038 PMID:31358969 NCBI chr 1:33,662,139...33,685,887
Ensembl chr 1:33,662,139...33,685,862 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISO
IBA
ISS		 (PMID:8626397)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:8626397 GO_REF:0000024 GO_REF:0000033 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682 		JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:67,777,438...67,789,731
Ensembl chr 7:67,777,381...67,789,744 		JBrowse link
G Pan2 poly(A) specific ribonuclease subunit PAN2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:729,146...747,744
Ensembl chr 7:729,562...747,744 		JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:7,476,707...7,595,384
Ensembl chr12:7,476,697...7,599,204 		JBrowse link
G Papolg poly(A) polymerase gamma involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:97,827,712...97,861,024
Ensembl chr14:97,827,712...97,861,024 		JBrowse link
G Pcif1 phosphorylated CTD interacting factor 1 involved_in ISO (PMID:30467178), (PMID:30487554), (PMID:31279658), (PMID:31279659), (PMID:33428944) RGD PMID:30467178 PMID:30487554 PMID:31279658 PMID:31279659 PMID:33428944 NCBI chr 3:153,614,147...153,627,079
Ensembl chr 3:153,614,147...153,627,079 		JBrowse link
G Pde12 phosphodiesterase 12 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:1,920,062...1,925,638
Ensembl chr16:1,915,386...1,925,887 		JBrowse link
G Phrf1 PHD and ring finger domains 1 IMP RGD PMID:8692929 RGD:1299392 NCBI chr 1:196,333,663...196,366,901
Ensembl chr 1:196,333,903...196,366,892 		JBrowse link
G Pnn pinin, desmosome associated protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:76,758,138...76,766,451
Ensembl chr 6:76,758,117...76,766,889 		JBrowse link
G Ppil3 peptidylprolyl isomerase like 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:59,966,405...59,980,147
Ensembl chr 9:59,964,919...59,979,886 		JBrowse link
G Pqbp1 polyglutamine binding protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:14,603,516...14,608,091
Ensembl chr  X:14,603,539...14,608,087 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in ISO
IEA		 (PMID:17594903)
GO_REF:0000107		 RGD
Ensembl		 PMID:17594903 GO_REF:0000107 NCBI chr19:24,155,081...24,178,430
Ensembl chr19:24,155,090...24,178,430 		JBrowse link
G Prmt9 protein arginine methyltransferase 9 involved_in ISO (PMID:25737013) RGD PMID:25737013 NCBI chr19:30,376,342...30,414,491
Ensembl chr19:30,380,124...30,414,458 		JBrowse link
G Prpf18 pre-mRNA processing factor 18 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:73,630,560...73,661,210
Ensembl chr17:73,630,571...73,690,979 		JBrowse link
G Prpf38b pre-mRNA processing factor 38B involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:196,553,224...196,562,271
Ensembl chr 2:196,553,225...196,562,250 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 involved_in IMP
IEA		 GO_REF:0000002
GO_REF:0000043		 InterPro
UniProt
RGD		 PMID:16177139 GO_REF:0000002 GO_REF:0000043, RGD:10045980 NCBI chr 7:9,842,574...9,852,332
Ensembl chr 7:9,842,574...9,852,397 		JBrowse link
G Ptbp1-ps3 polypyrimidine tract binding protein 1, pseudogene 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:105,696,627...105,698,961
Ensembl chr 4:105,696,503...105,699,047
Ensembl chr 4:105,696,503...105,699,047 		JBrowse link
G Ptbp3 polypyrimidine tract binding protein 3 involved_in IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 5:74,313,367...74,399,439
Ensembl chr 5:74,315,101...74,399,791 		JBrowse link
G Ptcd2 pentatricopeptide repeat domain 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:30,712,276...30,739,968
Ensembl chr 2:30,712,280...30,739,942 		JBrowse link
G Puf60 poly-U binding splicing factor 60 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:107,782,799...107,793,759
Ensembl chr 7:107,782,770...107,794,531 		JBrowse link
G Pus1 pseudouridine synthase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:45,880,364...45,889,196
Ensembl chr12:45,880,440...45,889,196 		JBrowse link
G Qki QKI, KH domain containing RNA binding involved_in IMP
IEA		 GO_REF:0000043 UniProt
RGD		 PMID:21253564 GO_REF:0000043, RGD:10045996 NCBI chr 1:50,387,716...50,501,568
Ensembl chr 1:50,387,698...50,498,831 		JBrowse link
G Rbbp6 RB binding protein 6, ubiquitin ligase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:177,503,988...177,537,397
Ensembl chr 1:177,503,313...177,535,678 		JBrowse link
G Rbfox1 RNA binding fox-1 homolog 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:8,152,198...10,248,120
Ensembl chr10:8,152,198...9,686,659 		JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:108,810,627...109,054,420
Ensembl chr 7:108,810,628...109,054,691 		JBrowse link
G Rbfox3 RNA binding fox-1 homolog 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:103,720,355...104,157,277
Ensembl chr10:103,720,636...104,156,935 		JBrowse link
G Rbm22 RNA binding motif protein 22 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:54,013,374...54,024,182
Ensembl chr18:54,013,351...54,024,569 		JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:18,275,681...18,288,231
Ensembl chr17:18,275,688...18,288,102 		JBrowse link
G Rbm25 RNA binding motif protein 25 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:103,271,775...103,319,090
Ensembl chr 6:103,271,801...103,317,854 		JBrowse link
G Rbm25l1 RNA binding motif protein 25-like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:10,267,026...10,270,510
Ensembl chr10:10,267,260...10,269,710
Ensembl chr 6:10,267,260...10,269,710 		JBrowse link
G Rbm38 RNA binding motif protein 38 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:161,801,577...161,814,381
Ensembl chr 3:161,801,577...161,814,381 		JBrowse link
G Rbm39 RNA binding motif protein 39 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:144,662,998...144,696,222
Ensembl chr 3:144,663,001...144,696,213 		JBrowse link
G Rbm47 RNA binding motif protein 47 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:42,053,290...42,191,572
Ensembl chr14:42,154,142...42,189,431 		JBrowse link
G Rbm48 RNA binding motif protein 48 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:30,559,063...30,569,409
Ensembl chr 4:30,559,087...30,569,406 		JBrowse link
G Rbm5 RNA binding motif protein 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:108,420,220...108,449,481
Ensembl chr 8:108,420,222...108,449,430 		JBrowse link
G Rbmx RNA binding motif protein, X-linked involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:135,305,237...135,314,806
Ensembl chr  X:135,305,325...135,314,743 		JBrowse link
G Rbmxl1 Rbmx like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:29,407,902...29,411,519
Ensembl chr19:29,407,912...29,412,859 		JBrowse link
G Rbmxl1b Rbmx like 1B involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:43,956,275...43,957,957
Ensembl chr 4:43,956,281...43,957,944 		JBrowse link
G Rnasel ribonuclease L involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:65,894,990...65,910,354
Ensembl chr13:65,901,459...65,908,704 		JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:13,445,516...13,455,858
Ensembl chr10:13,445,653...13,455,858 		JBrowse link
G Rnps1-ps5 RNA binding protein with serine rich domain 1, pseudogene 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:24,630,410...24,632,144
Ensembl chr 5:24,630,135...24,631,316 		JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873 		JBrowse link
G Scaf1 SR-related CTD-associated factor 1 IMP RGD PMID:8692929 RGD:1299392 NCBI chr 1:95,485,448...95,499,389
Ensembl chr 1:95,485,448...95,496,029 		JBrowse link
G Scaf4 SR-related CTD-associated factor 4 IMP RGD PMID:8692929 RGD:1299392 NCBI chr11:29,460,479...29,521,153
Ensembl chr11:29,465,106...29,521,153 		JBrowse link
G Scaf8 SR-related CTD-associated factor 8 IMP RGD PMID:8692929 RGD:1299392 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977 		JBrowse link
G Scnm1 sodium channel modifier 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:182,700,883...182,705,119
Ensembl chr 2:182,700,348...182,704,835 		JBrowse link
G Sde2 SDE2 telomere maintenance homolog involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:92,578,843...92,595,142
Ensembl chr13:92,578,874...92,595,140 		JBrowse link
G Sf3a1 splicing factor 3A subunit 1 involved_in ISO (PMID:15647371) RGD PMID:15647371 NCBI chr14:79,031,394...79,052,144
Ensembl chr14:79,031,394...79,052,144 		JBrowse link
G Sf3a2 splicing factor 3A subunit 2 involved_in ISO
IEA		 (PMID:15647371)
GO_REF:0000043		 RGD
UniProt		 PMID:15647371 GO_REF:0000043 NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530 		JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 involved_in ISO (PMID:15647371) RGD PMID:15647371 NCBI chr 5:136,967,713...136,987,345
Ensembl chr 5:136,967,691...136,987,361 		JBrowse link
G Sfswap splicing factor SWAP involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:27,109,607...27,179,941
Ensembl chr12:27,109,611...27,179,884 		JBrowse link
G Smn1 survival of motor neuron 1, telomeric involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:31,490,018...31,501,065
Ensembl chr 2:31,490,015...31,501,060 		JBrowse link
G Smndc1 survival motor neuron domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:252,389,675...252,400,749
Ensembl chr 1:252,389,673...252,401,616 		JBrowse link
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 3:114,428,854...114,458,194
Ensembl chr 3:114,428,854...114,458,182 		JBrowse link
G Snrnp27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:119,123,676...119,133,234
Ensembl chr 4:119,121,877...119,133,234 		JBrowse link
G Snrnp40 small nuclear ribonucleoprotein U5 subunit 40 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:142,700,632...142,733,776
Ensembl chr 5:142,700,534...142,733,776 		JBrowse link
G Son SON DNA and RNA binding protein involved_in ISO (PMID:21504830) RGD PMID:21504830 NCBI chr11:30,850,890...30,923,167
Ensembl chr11:30,892,005...30,923,167 		JBrowse link
G Srek1 splicing regulatory glutamic acid and lysine rich protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:34,849,548...34,885,120
Ensembl chr 2:34,852,458...34,884,972 		JBrowse link
G Srek1ip1 SREK1-interacting protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:35,975,978...35,999,636
Ensembl chr 2:35,975,989...35,999,636
Ensembl chr 7:35,975,989...35,999,636 		JBrowse link
G Srrm1 serine and arginine repetitive matrix 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:147,559,515...147,591,895
Ensembl chr 5:147,559,514...147,591,849 		JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 involved_in IBA
ISO		 GO_REF:0000033
(PMID:19737518)		 GO_Central
RGD		 PMID:19737518 GO_REF:0000033 NCBI chr12:39,998,975...40,158,897
Ensembl chr12:39,999,488...40,155,725 		JBrowse link
G Srrt serrate, RNA effector molecule involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:19,392,578...19,406,098
Ensembl chr12:19,392,625...19,406,095 		JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:102,052,158...102,055,365
Ensembl chr10:102,052,314...102,055,338 		JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:7,091,928...7,101,860
Ensembl chr20:7,091,910...7,101,078 		JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:33,415,666...33,465,319
Ensembl chr 8:33,415,671...33,524,389 		JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:170,646,042...170,660,291
Ensembl chr 4:170,646,001...170,660,828 		JBrowse link
G Sugp1 SURP and G patch domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:19,352,659...19,383,533
Ensembl chr16:19,351,793...19,383,756 		JBrowse link
G Sugp2 SURP and G patch domain containing 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:19,159,951...19,191,412
Ensembl chr16:19,164,767...19,191,340 		JBrowse link
G Sympk symplekin scaffold protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:78,672,372...78,700,684
Ensembl chr 1:78,672,378...78,700,684 		JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:89,402,487...89,435,517
Ensembl chr 8:89,402,866...89,435,515 		JBrowse link
G Tardbp TAR DNA binding protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:159,050,518...159,062,218
Ensembl chr 5:159,051,799...159,062,055 		JBrowse link
G Tcerg1 transcription elongation regulator 1 involved_in ISO (PMID:20215116) RGD PMID:20215116 NCBI chr18:34,505,708...34,566,470
Ensembl chr18:34,505,751...34,566,470 		JBrowse link
G Thoc2 THO complex subunit 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:120,634,966...120,749,569
Ensembl chr  X:120,634,968...120,749,513 		JBrowse link
G Thoc2l THO complex subunit 2-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:5,197,093...5,234,960
Ensembl chr14:5,197,003...5,235,453 		JBrowse link
G Thoc5 THO complex subunit 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:79,758,805...79,792,718
Ensembl chr14:79,758,917...79,792,718 		JBrowse link
G Thoc6 THO complex subunit 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:12,700,051...12,705,411
Ensembl chr10:12,700,051...12,706,925 		JBrowse link
G Thoc7 THO complex subunit 7 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:11,262,362...11,277,200
Ensembl chr15:11,262,613...11,277,193 		JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:138,445,284...138,487,544
Ensembl chr 5:138,445,295...138,487,477 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO
ISS		 (PMID:29072297)
GO_REF:0000024		 RGD
UniProt		 PMID:29072297 GO_REF:0000024 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
G Trmt6 tRNA methyltransferase 6 non-catalytic subunit involved_in ISO (PMID:29072297), (PMID:29107537) RGD PMID:29072297 PMID:29107537 NCBI chr 3:120,074,899...120,086,639
Ensembl chr 3:120,074,911...120,086,559 		JBrowse link
G Trmt61a tRNA methyltransferase 61A involved_in ISO
ISS		 (PMID:29072297), (PMID:29107537)
GO_REF:0000024		 RGD
UniProt		 PMID:29072297 PMID:29107537 GO_REF:0000024 NCBI chr 6:130,737,230...130,743,251
Ensembl chr 6:130,737,219...130,743,243 		JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:256,513,418...256,554,549
Ensembl chr 1:256,515,562...256,552,814 		JBrowse link
G Trub2 TruB pseudouridine synthase family member 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:13,049,220...13,059,836
Ensembl chr 3:13,033,745...13,059,930 		JBrowse link
G Tsen15 tRNA splicing endonuclease subunit 15 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:64,490,216...64,505,591
Ensembl chr13:64,490,218...64,505,617 		JBrowse link
G Tsen2 tRNA splicing endonuclease subunit 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:148,602,805...148,638,219
Ensembl chr 4:148,602,863...148,638,215 		JBrowse link
G Tsen34 tRNA splicing endonuclease subunit 34 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:65,517,324...65,525,194
Ensembl chr 1:65,517,330...65,524,412 		JBrowse link
G Virma vir like m6A methyltransferase associated involved_in ISO (PMID:24981863), (PMID:29507755) RGD PMID:24981863 PMID:29507755 NCBI chr 5:24,961,208...25,024,660
Ensembl chr 5:24,960,778...25,023,341 		JBrowse link
G Wbp11 WW domain binding protein 11 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:169,680,984...169,694,431
Ensembl chr 4:169,680,983...169,694,443 		JBrowse link
G Wtap WT1 associated protein involved_in ISO (PMID:24316715), (PMID:24407421), (PMID:24981863) RGD PMID:24316715 PMID:24407421 PMID:24981863 NCBI chr 1:47,665,965...47,691,067
Ensembl chr 1:47,665,965...47,691,065 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:134,436,916...134,509,308
Ensembl chr 3:134,437,109...134,509,306 		JBrowse link
G Ybx1 Y box binding protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:132,882,137...132,898,885
Ensembl chr 5:132,882,145...132,898,862 		JBrowse link
G Zc3h13 zinc finger CCCH type containing 13 involved_in ISO (PMID:29507755) RGD PMID:29507755 NCBI chr15:50,607,335...50,671,802
Ensembl chr15:50,607,380...50,671,802 		JBrowse link
G Zfp326 zinc finger protein 326 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:3,941,210...3,980,419
Ensembl chr14:3,941,958...3,980,384 		JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:98,930,705...98,935,748
Ensembl chr 6:98,930,718...98,935,748 		JBrowse link
G Zfp830 zinc finger protein 830 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:67,701,340...67,702,804
Ensembl chr10:67,701,073...67,704,523 		JBrowse link
G Zranb2 zinc finger RANBP2-type containing 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:246,573,110...246,586,942
Ensembl chr 2:246,573,166...246,586,942 		JBrowse link
mRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Pus1 pseudouridine synthase 1 involved_in ISO
IBA		 (PMID:31477916), (PMID:35051350)
GO_REF:0000033		 RGD
GO_Central		 PMID:31477916 PMID:35051350 GO_REF:0000033 NCBI chr12:45,880,364...45,889,196
Ensembl chr12:45,880,440...45,889,196 		JBrowse link
G Pus3 pseudouridine synthase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:33,910,461...33,918,716
Ensembl chr 8:33,911,357...33,918,714 		JBrowse link
G Pus7 pseudouridine synthase 7 involved_in ISO (PMID:28073919), (PMID:31477916), (PMID:35051350) RGD PMID:28073919 PMID:31477916 PMID:35051350 NCBI chr 4:11,360,169...11,401,139
Ensembl chr 4:11,360,188...11,401,172 		JBrowse link
G Pus7l pseudouridine synthase 7 like involved_in ISO (PMID:35051350) RGD PMID:35051350 NCBI chr 7:125,659,507...125,706,582
Ensembl chr 7:125,659,507...125,682,333 		JBrowse link
G Rpusd2 RNA pseudouridine synthase domain containing 2 involved_in ISO (PMID:31477916), (PMID:35051350) RGD PMID:31477916 PMID:35051350 NCBI chr 3:106,017,759...106,023,010
Ensembl chr 3:106,017,864...106,023,251 		JBrowse link
G Rpusd3 RNA pseudouridine synthase D3 involved_in ISO
IEA		 (PMID:27974379)
GO_REF:0000107		 RGD
Ensembl		 PMID:27974379 GO_REF:0000107 NCBI chr 4:146,553,743...146,562,789
Ensembl chr 4:146,558,562...146,562,794 		JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 involved_in ISO (PMID:35051350) RGD PMID:35051350 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873 		JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:28073919), (PMID:31477916)		 UniProt
GO_Central
RGD		 PMID:28073919 PMID:31477916 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:256,513,418...256,554,549
Ensembl chr 1:256,515,562...256,552,814 		JBrowse link
G Trub2 TruB pseudouridine synthase family member 2 involved_in ISO (PMID:27974379), (PMID:31477916) RGD PMID:27974379 PMID:31477916 NCBI chr 3:13,049,220...13,059,836
Ensembl chr 3:13,033,745...13,059,930 		JBrowse link
mRNA splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP, Elav-like family member 1 involved_in
acts_upstream_of_or_within		 ISO
IBA
IEA		 (PMID:11158314)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:11158314 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:76,924,591...76,999,429
Ensembl chr 3:76,924,613...76,999,426 		JBrowse link
G Celf2 CUGBP, Elav-like family member 2 involved_in
acts_upstream_of_or_within		 ISO
IBA
IEA		 (PMID:11158314)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:11158314 GO_REF:0000033 GO_REF:0000107 NCBI chr17:70,904,462...71,729,072
Ensembl chr17:71,210,853...71,728,333 		JBrowse link
G Celf3 CUGBP, Elav-like family member 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:182,116,034...182,130,163
Ensembl chr 2:182,116,073...182,130,163 		JBrowse link
G Celf4 CUGBP, Elav-like family member 4 acts_upstream_of_or_within ISO (PMID:11158314) RGD PMID:11158314 NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786 		JBrowse link
G Celf5 CUGBP, Elav-like family member 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:8,225,787...8,250,322
Ensembl chr 7:8,225,825...8,250,322 		JBrowse link
G Celf6 CUGBP, Elav-like family member 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:59,975,095...60,006,060
Ensembl chr 8:59,975,088...60,005,041 		JBrowse link
G Khdc4 KH domain containing 4, pre-mRNA splicing factor involved_in ISO (PMID:19641227) RGD PMID:19641227 NCBI chr 2:174,149,059...174,177,816
Ensembl chr 2:174,149,141...174,177,504 		JBrowse link
G Luc7l LUC7-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:15,273,340...15,307,131
Ensembl chr10:15,273,348...15,303,112 		JBrowse link
G Luc7l2 LUC7-like 2 pre-mRNA splicing factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:67,287,593...67,347,986
Ensembl chr 4:67,287,640...67,347,964 		JBrowse link
G Luc7l3 LUC7-like 3 pre-mRNA splicing factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:79,240,050...79,276,555
Ensembl chr10:79,240,563...79,276,538 		JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 acts_upstream_of_or_within ISO MGI:3052922 (PMID:14671308), (PMID:16717059) RGD PMID:14671308 PMID:16717059 NCBI chr 2:144,639,819...144,814,395
Ensembl chr 2:144,670,285...144,814,368 		JBrowse link
G Nol3 nucleolar protein 3 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:10196175)		 UniProt
Ensembl
RGD		 PMID:10196175 GO_REF:0000024 GO_REF:0000107 NCBI chr19:33,154,061...33,158,250
Ensembl chr19:33,154,062...33,158,250 		JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4124189 (PMID:10829067), (PMID:22802532)		 Ensembl
RGD		 PMID:10829067 PMID:22802532 GO_REF:0000107 NCBI chr 2:207,812,659...207,874,019
Ensembl chr 2:207,812,920...207,873,506 		JBrowse link
G Puf60 poly-U binding splicing factor 60 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:107,782,799...107,793,759
Ensembl chr 7:107,782,770...107,794,531 		JBrowse link
G Rbmx RNA binding motif protein, X-linked IMP RGD PMID:19282290 RGD:2316827 NCBI chr  X:135,305,237...135,314,806
Ensembl chr  X:135,305,325...135,314,743 		JBrowse link
G Rbmxl1 Rbmx like 1 involved_in IDA PMID:19282290 UniProt PMID:19282290 RGD:2316827 NCBI chr19:29,407,902...29,411,519
Ensembl chr19:29,407,912...29,412,859 		JBrowse link
G Setx senataxin involved_in ISO (PMID:19515850) RGD PMID:19515850 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in ISO (PMID:9774382) RGD PMID:9774382 NCBI chr 5:148,088,759...148,102,964
Ensembl chr 5:148,088,823...148,101,768 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in ISS
ISO		 GO_REF:0000024
(PMID:12549914)		 UniProt
RGD		 PMID:12549914 GO_REF:0000024 NCBI chr 3:151,589,546...151,594,869
Ensembl chr 3:151,589,535...151,594,860 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20167602)		 UniProt
RGD		 PMID:20167602 GO_REF:0000024 NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028 		JBrowse link
mRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ern1 endoplasmic reticulum to nucleus signaling 1 involved_in ISO (PMID:11779464), (PMID:19328063), (PMID:19622636), (PMID:20625543), (PMID:21317875) RGD PMID:11779464 PMID:19328063 PMID:19622636 PMID:20625543 PMID:21317875 NCBI chr10:91,326,889...91,421,201
Ensembl chr10:91,330,654...91,421,029 		JBrowse link
mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07037800.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:29,333,112...29,334,044 JBrowse link
G AABR07042226.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:144,806,986...144,812,552 JBrowse link
G AABR07048397.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 2:246,755,907...246,757,455 JBrowse link
G AC109707.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr14:43,128,814...43,130,403 JBrowse link
G AC126899.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr19:40,146,975...40,147,500 JBrowse link
G Aqr aquarius intron-binding spliceosomal factor involved_in ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 3:100,874,987...100,945,026
Ensembl chr 3:100,874,987...100,945,044 		JBrowse link
G Bcas2 BCAS2, pre-mRNA processing factor involved_in ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 2:190,692,503...190,700,386
Ensembl chr 2:190,692,461...190,700,389 		JBrowse link
G Bud13 BUD13 homolog involved_in ISO
IBA
IEA
ISS		 (PMID:29360106)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:29360106 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:46,575,124...46,590,964
Ensembl chr 8:46,575,115...46,590,958 		JBrowse link
G Bud31 BUD31 homolog involved_in ISO
IBA		 (PMID:28076346)
GO_REF:0000033		 RGD
GO_Central		 PMID:28076346 GO_REF:0000033 NCBI chr12:9,462,838...9,470,387
Ensembl chr12:9,462,441...9,470,509 		JBrowse link
G C3h9orf78 similar to human chromosome 9 open reading frame 78 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:14,264,262...14,272,552
Ensembl chr 3:14,264,083...14,272,764 		JBrowse link
G Cactin cactin, spliceosome C complex subunit involved_in ISO (PMID:28062851) RGD PMID:28062851 NCBI chr 7:8,391,396...8,397,219
Ensembl chr 7:8,391,397...8,396,829 		JBrowse link
G Casc3 CASC3 exon junction complex subunit involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:29301961)		 UniProt
Ensembl
RGD		 PMID:29301961 GO_REF:0000024 GO_REF:0000107 NCBI chr10:83,769,014...83,788,966
Ensembl chr10:83,769,001...83,788,966 		JBrowse link
G Cdc40 cell division cycle 40 involved_in ISO
IBA		 (PMID:28076346), (PMID:33220177)
GO_REF:0000033		 RGD
GO_Central		 PMID:28076346 PMID:33220177 GO_REF:0000033 NCBI chr20:44,273,080...44,325,605
Ensembl chr20:44,273,089...44,325,358 		JBrowse link
G Cdc5l cell division cycle 5-like involved_in ISO
IBA
IEA
ISS		 (PMID:28076346)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000002
GO_REF:0000024		 RGD
GO_Central
Ensembl
InterPro
UniProt		 PMID:28076346 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:15,564,949...15,603,453
Ensembl chr 9:15,564,767...15,603,450 		JBrowse link
G Cenatac centrosomal AT-AC splicing factor involved_in ISO (PMID:34009673) RGD PMID:34009673 NCBI chr 8:44,735,968...44,742,859
Ensembl chr 8:44,735,972...44,742,837 		JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 involved_in ISO
IBA
IEA
ISS		 (PMID:28076346)
GO_REF:0000033
GO_REF:0000002
GO_REF:0000024		 RGD
GO_Central
InterPro
UniProt		 PMID:28076346 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:133,338,593...133,354,329
Ensembl chr 3:133,337,039...133,354,302
Ensembl chr 6:133,337,039...133,354,302 		JBrowse link
G Cwc15 CWC15 spliceosome-associated protein involved_in ISS
ISO		 GO_REF:0000024
(PMID:28076346)		 UniProt
RGD		 PMID:28076346 GO_REF:0000024 NCBI chr 8:11,305,401...11,316,326
Ensembl chr 8:11,305,424...11,316,325
Ensembl chr 2:11,305,424...11,316,325 		JBrowse link
G Cwc22 CWC22 spliceosome associated protein involved_in ISO
IBA		 (PMID:29360106)
GO_REF:0000033		 RGD
GO_Central		 PMID:29360106 GO_REF:0000033 NCBI chr 3:62,815,230...62,864,269
Ensembl chr 3:62,802,045...62,864,228 		JBrowse link
G Cwc25 CWC25 spliceosome-associated protein homolog involved_in ISO
IBA		 (PMID:29301961)
GO_REF:0000033		 RGD
GO_Central		 PMID:29301961 GO_REF:0000033 NCBI chr10:82,735,698...82,760,373
Ensembl chr10:82,736,995...82,760,354 		JBrowse link
G Cwf19l1 CWF19 like cell cycle control factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:242,997,720...243,020,989
Ensembl chr 1:242,997,726...243,020,961 		JBrowse link
G Cwf19l2 CWF19 like cell cycle control factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:290,148...356,636
Ensembl chr 6:281,685...356,604 		JBrowse link
G Dbr1 debranching RNA lariats 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:10982890)		 GO_Central
RGD		 PMID:10982890 GO_REF:0000033 NCBI chr 8:100,139,039...100,150,768
Ensembl chr 8:100,139,034...100,151,030 		JBrowse link
G Ddx23 DEAD-box helicase 23 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:129,797,620...129,814,909
Ensembl chr 7:129,797,614...129,814,949 		JBrowse link
G Ddx39a DExD-box helicase 39A involved_in ISO
IBA
IEA		 UniProtKB:Q07478 (PMID:15047853)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:15047853 GO_REF:0000033 GO_REF:0000107 NCBI chr19:24,418,743...24,427,422
Ensembl chr19:24,418,114...24,426,954 		JBrowse link
G Ddx39b DExD-box helicase 39B involved_in ISO
IBA		 UniProtKB:Q07478 (PMID:15047853)
GO_REF:0000033		 RGD
GO_Central		 PMID:15047853 GO_REF:0000033 NCBI chr20:3,547,702...3,585,064
Ensembl chr20:3,572,056...3,584,996 		JBrowse link
G Ddx41 DEAD-box helicase 41 involved_in ISO
IBA		 (PMID:25920683)
GO_REF:0000033		 RGD
GO_Central		 PMID:25920683 GO_REF:0000033 NCBI chr17:9,102,926...9,108,415
Ensembl chr17:9,103,010...9,108,415 		JBrowse link
G Ddx41l1 DEAD-box helicase 41 like 1 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 6:107,185,923...107,187,961
Ensembl chr 6:107,186,096...107,187,961 		JBrowse link
G Ddx46 DEAD-box helicase 46 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:32494006), (PMID:34822310), (PMID:36797247)		 UniProt
GO_Central
RGD		 PMID:32494006 PMID:34822310 PMID:36797247 GO_REF:0000024 GO_REF:0000033 NCBI chr17:8,942,070...8,988,440
Ensembl chr17:8,944,454...8,988,439 		JBrowse link
G Dhx16 DEAH-box helicase 16 involved_in ISO (PMID:20423332), (PMID:25296192), (PMID:29360106) RGD PMID:20423332 PMID:25296192 PMID:29360106 NCBI chr20:2,862,000...2,874,991
Ensembl chr20:2,862,000...2,874,948 		JBrowse link
G Dhx38 DEAH-box helicase 38 involved_in ISO
IBA		 (PMID:9524131)
GO_REF:0000033		 RGD
GO_Central		 PMID:9524131 GO_REF:0000033 NCBI chr19:37,512,893...37,530,135
Ensembl chr19:37,512,891...37,530,140 		JBrowse link
G Dhx8 DEAH-box helicase 8 involved_in ISO
IBA		 (PMID:28076346)
GO_REF:0000033		 RGD
GO_Central		 PMID:28076346 GO_REF:0000033 NCBI chr10:86,667,641...86,704,198
Ensembl chr10:86,667,834...86,705,137 		JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 involved_in ISO
IBA		 (PMID:28076346)
GO_REF:0000033		 RGD
GO_Central		 PMID:28076346 GO_REF:0000033 NCBI chr10:87,804,893...87,852,181
Ensembl chr10:87,804,892...87,846,079 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:29301961)		 UniProt
GO_Central
RGD		 PMID:29301961 GO_REF:0000024 GO_REF:0000033 NCBI chr10:104,549,038...104,559,032
Ensembl chr10:104,549,038...104,559,057 		JBrowse link
G ENSRNOG00000063412 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr  X:133,163,165...133,163,784 JBrowse link
G ENSRNOG00000065450 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr18:73,476,936...73,477,748 JBrowse link
G ENSRNOG00000069332 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 2:89,339,501...89,339,701 JBrowse link
G Ess2 ess-2 splicing factor homolog involved_in ISO (PMID:34694367) RGD PMID:34694367 NCBI chr11:83,075,893...83,085,849
Ensembl chr11:83,075,925...83,084,846 		JBrowse link
G Fbxo24 F-box protein 24 acts_upstream_of_or_within ISO (PMID:38470475) RGD PMID:38470475 NCBI chr12:19,072,668...19,083,067
Ensembl chr12:19,072,716...19,083,067 		JBrowse link
G Fra10ac1 FRA10A associated CGG repeat 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:34694367)		 UniProt
Ensembl
RGD		 PMID:34694367 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:235,969,071...236,001,074
Ensembl chr 1:235,969,112...236,001,210 		JBrowse link
G Gcfc2 GC-rich sequence DNA-binding factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:114,481,613...114,519,268
Ensembl chr 4:114,481,607...114,519,962 		JBrowse link
G Gpkow G patch domain and KOW motifs involved_in ISO
IBA		 (PMID:25296192)
GO_REF:0000033		 RGD
GO_Central		 PMID:25296192 GO_REF:0000033 NCBI chr  X:14,791,601...14,806,384
Ensembl chr  X:14,791,610...14,806,384 		JBrowse link
G Hars2 histidyl-tRNA synthetase 2, mitochondrial involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:28,398,790...28,408,075
Ensembl chr18:28,398,795...28,414,747 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:26321680)		 UniProt
GO_Central
Ensembl
RGD		 PMID:26321680 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249 		JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:60,578,574...60,588,755
Ensembl chr 3:60,578,673...60,588,306 		JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C involved_in ISO
ISS		 (PMID:25719671)
GO_REF:0000024		 RGD
UniProt		 PMID:25719671 GO_REF:0000024 NCBI chr15:24,779,593...24,809,213
Ensembl chr15:24,779,450...24,809,183 		JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 involved_in ISO (PMID:32494006), (PMID:34822310), (PMID:36797247) RGD PMID:32494006 PMID:34822310 PMID:36797247 NCBI chr  X:134,935,426...134,949,607
Ensembl chr  X:134,935,426...134,949,607 		JBrowse link
G Ik IK cytokine involved_in ISO
IBA
ISS		 (PMID:28781166)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:28781166 GO_REF:0000024 GO_REF:0000033 NCBI chr18:28,358,004...28,372,809
Ensembl chr18:28,357,977...28,378,832 		JBrowse link
G Isy1 ISY1 splicing factor homolog involved_in ISO
ISS		 (PMID:29301961)
GO_REF:0000024		 RGD
UniProt		 PMID:29301961 GO_REF:0000024 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188 		JBrowse link
G LOC100912568 probable ATP-dependent RNA helicase DDX41-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:107,230,038...107,231,786
Ensembl chr 6:107,226,563...107,244,212 		JBrowse link
G LOC102548514 crooked neck-like protein 1-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 6:1,140,615...1,142,918 JBrowse link
G LOC120096281 heterogeneous nuclear ribonucleoprotein A3-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:65,940,732...65,942,250
Ensembl chr13:65,941,100...65,942,227 		JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO
IBA		 (PMID:28781166)
GO_REF:0000033		 RGD
GO_Central		 PMID:28781166 GO_REF:0000033 NCBI chr20:3,843,467...3,847,217
Ensembl chr20:3,843,466...3,847,266 		JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:28781166)
GO_REF:0000033
(PMID:10369684), (PMID:10523320)		 RGD
GO_Central		 PMID:10369684 PMID:10523320 PMID:28781166 GO_REF:0000033 NCBI chr 4:124,021,023...124,027,269
Ensembl chr 4:124,021,023...124,027,269 		JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO (PMID:28781166) RGD PMID:28781166 NCBI chr16:18,755,481...18,761,106
Ensembl chr16:18,755,484...18,760,926 		JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO
IBA		 (PMID:28781166)
GO_REF:0000033		 RGD
GO_Central		 PMID:28781166 GO_REF:0000033 NCBI chr 4:85,951,073...85,954,289
Ensembl chr 6:104,652,477...104,654,165
Ensembl chr 4:104,652,477...104,654,165 		JBrowse link
G Lsm5l1 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:1,339,769...1,340,198
Ensembl chr16:1,339,784...1,340,056
Ensembl chr 6:1,339,784...1,340,056 		JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO
IBA		 (PMID:28781166)
GO_REF:0000033		 RGD
GO_Central		 PMID:28781166 GO_REF:0000033 NCBI chr19:29,098,254...29,112,858
Ensembl chr13:42,114,032...42,116,484
Ensembl chr19:42,114,032...42,116,484 		JBrowse link
G Lsm6l1 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:42,114,013...42,116,559
Ensembl chr13:42,114,032...42,116,484 		JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO (PMID:28781166) RGD PMID:28781166 NCBI chr 7:8,856,698...8,859,113
Ensembl chr 7:8,856,489...8,859,119 		JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated involved_in ISO
IBA		 (PMID:28781166)
GO_REF:0000033		 RGD
GO_Central		 PMID:28781166 GO_REF:0000033 NCBI chr 4:47,306,259...47,312,125
Ensembl chr 4:47,306,295...47,314,293 		JBrowse link
G Magohb mago homolog B, exon junction complex subunit involved_in ISO (PMID:28502770) RGD PMID:28502770 NCBI chr 4:165,034,131...165,041,977
Ensembl chr 4:165,034,122...165,041,967 		JBrowse link
G Mettl14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in ISO (PMID:25719671) RGD PMID:25719671 NCBI chr 2:211,530,598...211,546,845
Ensembl chr 2:211,530,602...211,546,821 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in
NOT|involved_in		 ISO (PMID:25719671), (PMID:26321680)
(PMID:25569111)
(PMID:28637692)		 RGD PMID:25569111 PMID:25719671 PMID:26321680 PMID:28637692 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041 		JBrowse link
G Mfap1a microfibrillar-associated protein 1A involved_in ISO (PMID:28781166) RGD PMID:28781166 NCBI chr 3:108,440,163...108,456,744
Ensembl chr 3:108,438,845...108,456,750 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885 		JBrowse link
G Nhp2 NHP2 ribonucleoprotein involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr10:35,877,057...35,880,399
Ensembl chr10:35,877,054...35,882,545 		JBrowse link
G Nova1 NOVA alternative splicing regulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000107
MGI:2386947 (PMID:10719891)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:10719891 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:63,780,105...63,905,567
Ensembl chr 6:63,783,489...63,906,289 		JBrowse link
G Nova2 NOVA alternative splicing regulator 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:78,572,253...78,613,703
Ensembl chr 1:78,572,279...78,608,021 		JBrowse link
G Paxbp1 PAX3 and PAX7 binding protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:30,272,037...30,301,504
Ensembl chr11:30,272,037...30,301,648 		JBrowse link
G Phf5a PHD finger protein 5A involved_in ISS
IBA
ISO
IEA		 GO_REF:0000024
GO_REF:0000033
(PMID:12234937), (PMID:27720643), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247)
GO_REF:0000002		 UniProt
GO_Central
RGD
InterPro		 PMID:12234937 PMID:27720643 PMID:29360106 PMID:32494006 PMID:34822310 More... GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr 7:113,378,469...113,385,035
Ensembl chr 7:113,378,471...113,385,460 		JBrowse link
G Plrg1 pleiotropic regulator 1 involved_in ISO
IBA
IEA
ISS		 (PMID:28076346)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000002
GO_REF:0000024		 RGD
GO_Central
Ensembl
InterPro
UniProt		 PMID:28076346 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:168,408,139...168,424,470
Ensembl chr 2:168,408,124...168,424,522 		JBrowse link
G Ppie peptidylprolyl isomerase E involved_in ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 5:135,406,172...135,419,332
Ensembl chr 5:135,406,176...135,419,235 		JBrowse link
G Ppil1 peptidylprolyl isomerase like 1 involved_in ISO
IBA		 (PMID:28076346), (PMID:33220177)
GO_REF:0000033		 RGD
GO_Central		 PMID:28076346 PMID:33220177 GO_REF:0000033 NCBI chr20:7,302,292...7,322,349
Ensembl chr20:7,302,621...7,322,354 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISO
IBA
IEA
ISS		 (PMID:20176811)
GO_REF:0000033
GO_REF:0000002
GO_REF:0000024		 RGD
GO_Central
InterPro
UniProt		 PMID:20176811 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662 		JBrowse link
G Prpf3 pre-mRNA processing factor 3 involved_in ISO
IBA		 (PMID:28781166)
GO_REF:0000033		 RGD
GO_Central		 PMID:28781166 GO_REF:0000033 NCBI chr 2:183,379,041...183,403,526
Ensembl chr 2:183,378,718...183,403,489 		JBrowse link
G Prpf31 pre-mRNA processing factor 31 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:28781166)
GO_REF:0000033
(PMID:11867543)		 RGD
GO_Central		 PMID:11867543 PMID:28781166 GO_REF:0000033 NCBI chr 1:65,575,887...65,587,561
Ensembl chr 1:65,575,887...65,587,873 		JBrowse link
G Prpf38a pre-mRNA processing factor 38A involved_in ISO (PMID:26673105), (PMID:28781166) RGD PMID:26673105 PMID:28781166 NCBI chr 5:123,312,461...123,324,160
Ensembl chr 5:123,311,482...123,323,972 		JBrowse link
G Prpf38b pre-mRNA processing factor 38B involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 2:196,553,224...196,562,271
Ensembl chr 2:196,553,225...196,562,250 		JBrowse link
G Prpf4 pre-mRNA splicing tri-snRNP complex factor 4 involved_in ISO
IBA		 (PMID:28781166)
GO_REF:0000033		 RGD
GO_Central		 PMID:28781166 GO_REF:0000033 NCBI chr 5:75,859,934...75,873,924
Ensembl chr 5:75,859,924...75,873,919 		JBrowse link
G Prpf40a pre-mRNA processing factor 40 homolog A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:37,625,585...37,689,859
Ensembl chr 3:37,627,690...37,690,886 		JBrowse link
G Prpf40b pre-mRNA processing factor 40 homolog B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:130,392,611...130,454,053
Ensembl chr 7:130,432,112...130,454,052 		JBrowse link
G Prpf6 pre-mRNA processing factor 6 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000002
(PMID:21549338), (PMID:28781166)		 UniProt
GO_Central
InterPro
RGD		 PMID:21549338 PMID:28781166 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:168,706,952...168,771,191
Ensembl chr 3:168,704,299...168,774,991 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 involved_in ISO (PMID:28781166), (PMID:29301961) RGD PMID:28781166 PMID:29301961 NCBI chr10:60,331,494...60,354,606
Ensembl chr10:60,331,494...60,354,606 		JBrowse link
G Rbm10 RNA binding motif protein 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:1,540,399...1,572,571
Ensembl chr  X:1,540,398...1,572,575 		JBrowse link
G Rbm14 RNA binding motif protein 14 involved_in ISO
IBA		 (PMID:31794640)
GO_REF:0000033		 RGD
GO_Central		 PMID:31794640 GO_REF:0000033 NCBI chr 1:202,076,940...202,105,688
Ensembl chr 1:202,078,287...202,105,665
Ensembl chr 1:202,078,287...202,105,665 		JBrowse link
G Rbm41 RNA binding motif protein 41 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:103,605,732...103,660,381
Ensembl chr  X:103,608,585...103,660,381 		JBrowse link
G Rbm44 RNA binding motif protein 44 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:91,731,153...91,756,783
Ensembl chr 9:91,731,115...91,756,772 		JBrowse link
G Rbm4b RNA binding motif protein 4B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:202,047,934...202,058,025
Ensembl chr 1:202,047,927...202,058,020 		JBrowse link
G Rbm5 RNA binding motif protein 5 involved_in IBA GO_REF:000003