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ONTOLOGY REPORT - ANNOTATIONS


Term:carbohydrate biosynthetic process
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Accession:GO:0016051 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
Synonyms:exact_synonym: anabolic carbohydrate metabolic process;   anabolic carbohydrate metabolism;   carbohydrate anabolism;   carbohydrate biosynthesis;   carbohydrate formation;   carbohydrate synthesis
 alt_id: GO:0006093



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carbohydrate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3gat2 beta-1,3-glucuronyltransferase 2 IMP RGD PMID:10082676 RGD:632232 NCBI chr 9:26,167,174...26,250,153
Ensembl chr 9:26,167,174...26,250,153
JBrowse link
G Chst10 carbohydrate sulfotransferase 10 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:41,092,805...41,122,737
Ensembl chr 9:41,092,808...41,122,503
JBrowse link
G Chst11 carbohydrate sulfotransferase 11 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:20,524,535...20,743,008
Ensembl chr 7:20,528,100...20,743,111
JBrowse link
G Chst12 carbohydrate sulfotransferase 12 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:14,110,631...14,129,099
Ensembl chr12:14,110,393...14,129,057
JBrowse link
G Chst13 carbohydrate sulfotransferase 13 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:122,824,022...122,837,940
Ensembl chr 4:122,824,022...122,838,019
JBrowse link
G Chst14 carbohydrate sulfotransferase 14 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:105,916,481...105,918,538
Ensembl chr 3:105,916,466...105,918,548
JBrowse link
G Chst9 carbohydrate sulfotransferase 9 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:6,576,391...6,851,078
Ensembl chr18:6,577,348...6,850,868
JBrowse link
G Nans N-acetylneuraminate synthase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:60,780,441...60,797,583
Ensembl chr 5:60,780,392...60,814,950
JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 IDA poly(ADP-ribose) RGD PMID:15857403 RGD:1601082 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 acts_upstream_of_or_within ISO (PMID:11980897) RGD PMID:11980897 NCBI chr17:76,740,755...76,884,178
Ensembl chr17:76,745,224...76,884,299
JBrowse link
chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 involved_in ISO (PMID:12163485) RGD PMID:12163485 NCBI chr16:20,995,210...21,330,586
Ensembl chr16:21,235,784...21,330,319
JBrowse link
extracellular polysaccharide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Has1 hyaluronan synthase 1 involved_in ISO
IBA
(MGI:5508296|PMID:10455188)
GO_REF:0000033
RGD
GO_Central
PMID:10455188 GO_REF:0000033 MGI:5508296 NCBI chr 1:58,693,411...58,705,653
Ensembl chr 1:58,693,411...58,705,397
JBrowse link
G Has2 hyaluronan synthase 2 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(MGI:5508296|PMID:10455188)
UniProt
GO_Central
RGD
PMID:10455188 GO_REF:0000024 GO_REF:0000033 MGI:5508296 NCBI chr 7:88,113,326...88,139,337
Ensembl chr 7:88,113,326...88,128,933
JBrowse link
G Has3 hyaluronan synthase 3 involved_in ISO
IBA
(MGI:5508296|PMID:10455188)
GO_REF:0000033
RGD
GO_Central
PMID:10455188 GO_REF:0000033 MGI:5508296 NCBI chr19:34,768,421...34,782,170
Ensembl chr19:34,771,982...34,782,592
JBrowse link
G Mat2b methionine adenosyltransferase 2 non-catalytic beta subunit involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr10:25,106,928...25,122,982
Ensembl chr10:25,106,930...25,122,777
JBrowse link
fructose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b1 aldo-keto reductase family 1 member B1 involved_in ISO (PMID:17727625), (PMID:29238976) RGD PMID:17727625 PMID:29238976 NCBI chr 4:62,932,033...62,946,126
Ensembl chr 4:62,932,031...62,946,157
JBrowse link
G Sord sorbitol dehydrogenase involved_in ISO
IEA
(PMID:3365415), (PMID:6870831), (PMID:8487505)
MGI:3616090 (PMID:18799757), (PMID:9604875)
GO_REF:0000107
RGD
Ensembl
PMID:3365415 PMID:6870831 PMID:8487505 PMID:9604875 PMID:18799757 GO_REF:0000107 NCBI chr 3:109,184,697...109,216,133
Ensembl chr 3:109,184,676...109,216,133
JBrowse link
gluconeogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07052465.1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 3:53,998,486...54,003,647 JBrowse link
G Aldob aldolase, fructose-bisphosphate B involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:63,889,045...63,902,086
Ensembl chr 5:63,889,046...63,902,116
JBrowse link
G Aldoc aldolase, fructose-bisphosphate C involved_in IEA
ISO
GO_REF:0000107
(PMID:24958256)
Ensembl
RGD
PMID:24958256 GO_REF:0000107 NCBI chr10:63,217,477...63,221,066
Ensembl chr10:63,217,451...63,221,066
JBrowse link
G Atf3 activating transcription factor 3 acts_upstream_of_or_within ISO (PMID:11916968) RGD PMID:11916968 NCBI chr13:102,751,278...102,800,520
Ensembl chr13:102,751,321...102,764,631
JBrowse link
G Atf4 activating transcription factor 4 acts_upstream_of_or_within ISO (PMID:11916968) RGD PMID:11916968 NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446
JBrowse link
G C1qtnf12 C1q and TNF related 12 acts_upstream_of ISO (PMID:22275362) RGD PMID:22275362 NCBI chr 5:166,551,628...166,556,003
Ensembl chr 5:166,551,628...166,556,003
JBrowse link
G Crtc2 CREB regulated transcription coactivator 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:3606826|PMID:16148943)
UniProt
Ensembl
RGD
PMID:16148943 GO_REF:0000024 GO_REF:0000107 MGI:3606826 NCBI chr 2:175,709,603...175,719,768
Ensembl chr 2:175,709,644...175,719,763
JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5567906|PMID:20852621)
UniProt
RGD
PMID:20852621 GO_REF:0000024 MGI:5567906 NCBI chr 7:18,529,823...18,594,092
Ensembl chr 7:18,529,823...18,594,091
JBrowse link
G Eno1 enolase 1 involved_in ISO (PMID:30679508) RGD PMID:30679508 NCBI chr 5:160,719,951...160,731,337
Ensembl chr 5:160,719,951...160,731,336
JBrowse link
G Eno2 enolase 2 IDA RGD PMID:15720133 RGD:2302795 NCBI chr 4:157,572,085...157,580,971
Ensembl chr 4:157,572,088...157,580,980
JBrowse link
G ENSRNOG00000066874 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 1:92,898,827...92,899,972 JBrowse link
G Fbp1 fructose-bisphosphatase 1 involved_in IDA
ISO
IBA
IEA
(PMID:30150719)
GO_REF:0000033
(PMID:19259699), (PMID:20096900)
GO_REF:0000041
RGD
GO_Central
UniProt
PMID:19259699 PMID:20096900 PMID:30150719 PMID:4353083 PMID:11440903 GO_REF:0000033 GO_REF:0000041, RGD:2302851, RGD:2302970 NCBI chr17:2,207,271...2,230,076
Ensembl chr17:2,208,031...2,230,071
JBrowse link
G Fbp2 fructose-bisphosphatase 2 involved_in IDA
IBA
IEA
GO_REF:0000033
GO_REF:0000041
GO_Central
UniProt
RGD
PMID:4353083 PMID:11440903 GO_REF:0000033 GO_REF:0000041, RGD:2302851, RGD:2302970 NCBI chr17:2,236,088...2,253,702
Ensembl chr17:2,236,336...2,253,698
JBrowse link
G G6pc1 glucose-6-phosphatase catalytic subunit 1 involved_in TAS
ISO
IBA
IEA
IDA
(PMID:33359667)
GO_REF:0000033
GO_REF:0000041
(PMID:8211187)
RGD
GO_Central
UniProt
PMID:8211187 PMID:33359667 PMID:8865366 PMID:11440903 PMID:4353083 More... GO_REF:0000033 GO_REF:0000041, RGD:728661, RGD:2302970, RGD:2302851, RGD:2302850 NCBI chr10:86,307,400...86,318,766
Ensembl chr10:86,257,668...86,333,804
JBrowse link
G G6pc3 glucose 6 phosphatase catalytic subunit 3 involved_in IDA
ISO
IBA
IEA
(PMID:15661744)
GO_REF:0000033
GO_REF:0000041
RGD
GO_Central
UniProt
PMID:15661744 PMID:4303362 PMID:11440903 PMID:4353083 GO_REF:0000033 GO_REF:0000041, RGD:2302850, RGD:2302970, RGD:2302851 NCBI chr10:87,146,987...87,151,223
Ensembl chr10:87,146,901...87,151,221
JBrowse link
G Gapdh glyceraldehyde-3-phosphate dehydrogenase involved_in IDA
ISO
IMP
(PMID:28258188) RGD PMID:28258188 PMID:15720133 PMID:28258188 RGD:2302795, RGD:13792662 NCBI chr 4:157,962,312...157,967,158
Ensembl chr 4:157,962,343...157,966,235
JBrowse link
G Gcg glucagon involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
(PMID:24051374)
Ensembl
RGD
PMID:24051374 GO_REF:0000107 NCBI chr 3:47,113,914...47,122,958
Ensembl chr 3:47,113,914...47,122,929
JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:17545671)
Ensembl
RGD
PMID:17545671 GO_REF:0000107 NCBI chr 1:242,357,293...242,381,535
Ensembl chr 1:242,357,306...242,380,633
JBrowse link
G Gpd1 glycerol-3-phosphate dehydrogenase 1 acts_upstream_of_or_within ISO (PMID:12093800) RGD PMID:12093800 NCBI chr 7:130,842,526...130,851,530
Ensembl chr 7:130,844,138...130,851,529
JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 acts_upstream_of_or_within ISO MGI:2387347 (PMID:12093800) RGD PMID:12093800 NCBI chr 3:41,800,552...41,937,729
Ensembl chr 3:41,801,930...41,936,901
JBrowse link
G Gpi glucose-6-phosphate isomerase involved_in IEA
ISO
IBA
GO_REF:0000043
(PMID:31891762)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:31891762 GO_REF:0000033 GO_REF:0000043 NCBI chr 1:86,828,211...86,856,077
Ensembl chr 1:86,828,216...86,856,086
JBrowse link
G Gpt2 glutamic--pyruvic transaminase 2 IMP RGD PMID:25865565 RGD:11342811 NCBI chr19:21,526,800...21,561,314
Ensembl chr19:21,517,621...21,560,610
JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of ISO MGI:95674 (PMID:24051374) RGD PMID:24051374 NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166
JBrowse link
G Kat2b lysine acetyltransferase 2B acts_upstream_of ISO MGI:2155884|MGI:95674 (PMID:24051374) RGD PMID:24051374 NCBI chr 9:6,562,525...6,667,064
Ensembl chr 9:6,562,288...6,667,064
JBrowse link
G Lepr leptin receptor involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:1856009 (PMID:24051374)
Ensembl
RGD
PMID:24051374 GO_REF:0000107 NCBI chr 5:116,294,409...116,477,904
Ensembl chr 5:116,289,823...116,475,908
JBrowse link
G Mdh2 malate dehydrogenase 2 involved_in ISO (PMID:12581790) RGD PMID:12581790 NCBI chr12:20,894,269...20,907,225
Ensembl chr12:20,894,262...20,907,271
JBrowse link
G Pc pyruvate carboxylase involved_in IDA
ISO
IBA
IEA
MGI:2449284|MGI:6382162 (PMID:10938127), (PMID:23423574), (PMID:31006591)
GO_REF:0000033
GO_REF:0000041
RGD
GO_Central
UniProt
PMID:10938127 PMID:23423574 PMID:31006591 PMID:4353083 PMID:6049928 GO_REF:0000033 GO_REF:0000041, RGD:2302851, RGD:2302971 NCBI chr 1:201,799,374...201,898,412
Ensembl chr 1:201,804,267...201,898,380
JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1 involved_in
acts_upstream_of_or_within
TAS
ISO
IBA
IEA
IDA
MGI:2449283|MGI:2449284 (MGI:6119963|PMID:29230018), (PMID:10938127), (PMID:15347677), (PMID:19643083), (PMID:34156032)
(PMID:11916968)
GO_REF:0000033
(PMID:26971250), (PMID:30193097)
GO_REF:0000041
PMID:4186849
RGD
GO_Central
UniProt
PMID:10938127 PMID:11916968 PMID:15347677 PMID:19643083 PMID:26971250 More... GO_REF:0000033 GO_REF:0000041 MGI:6119963, RGD:625518, RGD:8553288, RGD:2302971, RGD:2302970, RGD:2302851, RGD:2302850 NCBI chr 3:161,930,256...161,936,205
Ensembl chr 3:161,930,256...161,936,191
JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) involved_in IDA
ISO
IBA
IEA
MGI:97501 (PMID:23466304)
GO_REF:0000033
GO_REF:0000041
RGD
GO_Central
UniProt
PMID:23466304 PMID:4353083 PMID:6049928 PMID:11440903 GO_REF:0000033 GO_REF:0000041, RGD:2302851, RGD:2302971, RGD:2302970 NCBI chr15:29,027,891...29,036,729
Ensembl chr15:29,027,894...29,037,283
JBrowse link
G Per2 period circadian regulator 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:5319572|PMID:22504074)
UniProt
RGD
PMID:22504074 GO_REF:0000024 MGI:5319572 NCBI chr 9:92,007,289...92,049,551
Ensembl chr 9:92,007,296...92,049,459
JBrowse link
G Pgam1 phosphoglycerate mutase 1 involved_in ISO (PMID:24958256) RGD PMID:24958256 NCBI chr 1:240,723,832...240,731,443
Ensembl chr 1:240,723,920...240,738,452
JBrowse link
G Pgam2 phosphoglycerate mutase 2 IDA RGD PMID:15720133 RGD:2302795 NCBI chr14:80,681,796...80,683,907
Ensembl chr14:80,681,776...80,683,940
JBrowse link
G Pgk1 phosphoglycerate kinase 1 involved_in IDA
ISO
IEA
IBA
IMP
MGI:106918 (PMID:19643083)
GO_REF:0000118
GO_REF:0000033
RGD
TreeGrafter
GO_Central
PMID:19643083 PMID:15720133 PMID:3091090 GO_REF:0000033 GO_REF:0000118, RGD:2302795, RGD:2302860 NCBI chr  X:71,271,454...71,287,429
Ensembl chr  X:71,271,440...71,287,418
JBrowse link
G Pgk1l1 phosphoglycerate kinase 1 like 1 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 2:42,754,605...42,755,929
Ensembl chr 2:42,754,639...42,755,856
JBrowse link
G Pgk2 phosphoglycerate kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:20,480,367...20,481,933
Ensembl chr 9:20,480,203...20,571,481
JBrowse link
G Ppara peroxisome proliferator activated receptor alpha acts_upstream_of ISO MGI:1857774 (PMID:15232616) RGD PMID:15232616 NCBI chr 7:116,832,405...116,900,878
Ensembl chr 7:116,832,756...116,895,346
JBrowse link
G Ppargc1a PPARG coactivator 1 alpha involved_in IEP
IEA
ISO
ISS
GO_REF:0000107
(MGI:3579714|PMID:15716268)
(PMID:16753578), (PMID:23142079)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:15716268 PMID:16753578 PMID:23142079 PMID:21212096 GO_REF:0000024 GO_REF:0000107 MGI:3579714, RGD:9585757 NCBI chr14:58,860,752...59,516,525
Ensembl chr14:58,861,144...59,512,656
JBrowse link
G Ppp4r3a protein phosphatase 4, regulatory subunit 3A acts_upstream_of ISO (PMID:20876121) RGD PMID:20876121 NCBI chr 6:120,302,508...120,365,907
Ensembl chr 6:120,302,511...120,365,891
JBrowse link
G Ppp4r3b protein phosphatase 4, regulatory subunit 3B acts_upstream_of ISO (PMID:20876121) RGD PMID:20876121 NCBI chr14:102,917,043...102,965,210
Ensembl chr14:102,917,443...103,068,192
JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO
IEA
(PMID:18466349)
GO_REF:0000107
(MGI:3584329|PMID:16034410)
RGD
Ensembl
PMID:16034410 PMID:18466349 GO_REF:0000107 MGI:3584329 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Sds serine dehydratase involved_in TAS
IEA
GO_REF:0000041 UniProt
RGD
PMID:11906824 GO_REF:0000041, RGD:633956 NCBI chr12:36,083,226...36,090,540
Ensembl chr12:36,083,229...36,088,203
JBrowse link
G Serpina12 serpin family A member 12 involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
(PMID:22837305)
Ensembl
RGD
PMID:22837305 GO_REF:0000107 NCBI chr 6:122,952,552...122,967,271
Ensembl chr 6:122,952,552...122,967,271
JBrowse link
G Slc25a11 solute carrier family 25 member 11 involved_in IEA
ISO
GO_REF:0000107
(PMID:35507647)
Ensembl
RGD
PMID:35507647 GO_REF:0000107 NCBI chr10:55,357,590...55,360,441
Ensembl chr10:55,357,597...55,360,410
JBrowse link
G Slc25a13 solute carrier family 25 member 13 involved_in IEA
ISO
GO_REF:0000107
MGI:3028639 (PMID:14701727)
Ensembl
RGD
PMID:14701727 GO_REF:0000107 NCBI chr 4:34,179,224...34,361,912
Ensembl chr 4:34,179,224...34,361,902
JBrowse link
G Slc37a4 solute carrier family 37 member 4 involved_in ISO (PMID:28973635) RGD PMID:28973635 NCBI chr 8:44,723,216...44,729,301
Ensembl chr 8:44,723,339...44,729,301
JBrowse link
G Slc39a14 solute carrier family 39 member 14 acts_upstream_of ISO (MGI:4950776|PMID:21445361) RGD PMID:21445361 MGI:4950776 NCBI chr15:45,376,806...45,423,549
Ensembl chr15:45,376,917...45,423,524
JBrowse link
G Tpi1 triosephosphate isomerase 1 involved_in IEA
ISO
IBA
GO_REF:0000041
(PMID:31891762)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:31891762 GO_REF:0000033 GO_REF:0000041 NCBI chr 4:157,615,283...157,618,813
Ensembl chr 4:157,615,386...157,619,541
JBrowse link
G Tpi1l1 triosephosphate isomerase 1 like 1 involved_in IEA
IBA
GO_REF:0000041
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000041 NCBI chr 8:23,647,760...23,654,967
Ensembl chr 8:23,647,764...23,655,504
JBrowse link
G Tpi1l2 triosephosphate isomerase 1 like 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr17:27,101,431...27,102,823
Ensembl chr17:27,101,431...27,102,809
JBrowse link
G Wdr5 WD repeat domain 5 involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:1343094|MGI:95674 (PMID:24051374)
Ensembl
RGD
PMID:24051374 GO_REF:0000107 NCBI chr 3:10,836,964...10,856,682
Ensembl chr 3:10,837,025...10,856,671
JBrowse link
glycerol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 involved_in
acts_upstream_of_or_within
IDA
ISO
IEA
PMID:17545671
(PMID:17545671)
GO_REF:0000107
RGD
Ensembl
PMID:17545671 PMID:17545671 GO_REF:0000107, RGD:8553472 NCBI chr 1:242,357,293...242,381,535
Ensembl chr 1:242,357,306...242,380,633
JBrowse link
G Lep leptin IDA RGD PMID:21068181 RGD:5128556 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
JBrowse link
G Pgp phosphoglycolate phosphatase involved_in ISO
IEA
IDA
(PMID:26755581)
GO_REF:0000107
(MGI:5707518|PMID:26755581)
RGD
Ensembl
PMID:26755581 PMID:26755581 GO_REF:0000107 MGI:5707518, RGD:10679995 NCBI chr10:13,495,232...13,497,858
Ensembl chr10:13,494,291...13,497,858
JBrowse link
G Pudp pseudouridine 5'-phosphatase involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr18:43,878,374...43,880,756
Ensembl chr18:43,878,080...43,880,791
JBrowse link
glycerol biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pck1 phosphoenolpyruvate carboxykinase 1 involved_in
acts_upstream_of_or_within
IDA
ISO
IBA
PMID:4186849
MGI:2182390 (PMID:11792850)
GO_REF:0000033
RGD
GO_Central
PMID:11792850 PMID:4186849 GO_REF:0000033, RGD:8553288 NCBI chr 3:161,930,256...161,936,205
Ensembl chr 3:161,930,256...161,936,191
JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr15:29,027,891...29,036,729
Ensembl chr15:29,027,894...29,037,283
JBrowse link
glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain involved_in ISO
IEA
(MGI:4412440|PMID:18459129)
GO_REF:0000107
RGD
Ensembl
PMID:18459129 GO_REF:0000107 MGI:4412440 NCBI chr 2:242,858,865...242,883,036
Ensembl chr 2:242,858,865...242,883,147
JBrowse link
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:204,705,053...204,760,966
Ensembl chr 2:204,705,053...204,760,828
JBrowse link
G Akt1 AKT serine/threonine kinase 1 involved_in IMP
IEA
PMID:10400692
GO_REF:0000043
UniProt PMID:10400692 GO_REF:0000043, RGD:8553850 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921
JBrowse link
G Akt2 AKT serine/threonine kinase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:82,877,228...82,933,828
Ensembl chr 1:82,883,547...82,933,817
JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2145264 (PMID:28536304)
MGI:6118039 (PMID:17118331), (PMID:18040046), (PMID:31042462)
Ensembl
RGD
PMID:17118331 PMID:18040046 PMID:28536304 PMID:31042462 GO_REF:0000107 NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:5,727,066...5,920,555
JBrowse link
G Epm2aip1 EPM2A interacting protein 1 acts_upstream_of ISO MGI:3857785 (PMID:24142699) RGD PMID:24142699 NCBI chr 8:111,233,871...111,241,219
Ensembl chr 8:111,233,826...111,241,871
JBrowse link
G Gbe1 1,4-alpha-glucan branching enzyme 1 involved_in IDA
ISO
IBA
MGI:4868492|MGI:5293612|MGI:5767122 (PMID:21075835), (PMID:21856731), (PMID:31042462)
GO_REF:0000033
(PMID:26199317)
RGD
GO_Central
PMID:21075835 PMID:21856731 PMID:26199317 PMID:31042462 PMID:6449198 GO_REF:0000033, RGD:1642743 NCBI chr11:8,734,806...9,000,226
Ensembl chr11:8,734,820...9,000,210
JBrowse link
G Gck glucokinase IDA RGD PMID:17028192 RGD:1581879 NCBI chr14:80,785,060...80,829,842
Ensembl chr14:80,785,060...80,826,995
JBrowse link
G Gyg1 glycogenin 1 involved_in IDA
ISO
IBA
IEA
MGI:4364071 (PMID:33219378)
GO_REF:0000033
GO_REF:0000117
GO_REF:0000041
(PMID:22160680)
RGD
GO_Central
UniProt
PMID:22160680 PMID:33219378 PMID:8224611 PMID:10710493 GO_REF:0000033 GO_REF:0000041 GO_REF:0000117, RGD:2303736, RGD:2304070 NCBI chr 2:102,611,888...102,653,916
Ensembl chr 2:102,598,496...102,653,797
JBrowse link
G Gys1 glycogen synthase 1 involved_in
acts_upstream_of_or_within
IDA
IBA
ISO
IEA
GO_REF:0000033
MGI:3052742 (PMID:15282316)
MGI:4432767 (PMID:17118331), (PMID:20300197), (PMID:21356517), (PMID:33219378)
GO_REF:0000041
GO_Central
RGD
UniProt
PMID:15282316 PMID:17118331 PMID:20300197 PMID:21356517 PMID:33219378 More... GO_REF:0000033 GO_REF:0000041, RGD:2303748, RGD:1642743 NCBI chr 1:95,915,443...95,935,292
Ensembl chr 1:95,915,443...95,935,292
JBrowse link
G Gys2 glycogen synthase 2 involved_in IDA
IBA
ISO
IEA
GO_REF:0000033
MGI:4462836 (PMID:28483921)
(PMID:1731614), (PMID:9691087)
PMID:11415431
GO_REF:0000041
GO_Central
RGD
UniProt
PMID:1731614 PMID:9691087 PMID:28483921 PMID:15138155 PMID:11415431 More... GO_REF:0000033 GO_REF:0000041, RGD:1582633, RGD:8554625, RGD:8554840, RGD:1642743, RGD:2304128 NCBI chr 4:175,365,054...175,406,228
Ensembl chr 4:175,365,054...175,406,228
JBrowse link
G Nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 acts_upstream_of_or_within
involved_in
ISO MGI:1341085 (PMID:28536304)
MGI:3808349|MGI:5312923 (PMID:20538597), (PMID:31042462)
RGD PMID:20538597 PMID:28536304 PMID:31042462 NCBI chr17:17,674,303...17,677,144
Ensembl chr17:17,674,319...17,677,148
JBrowse link
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 involved_in IEA
ISO
ISS
GO_REF:0000107
UniProtKB:O54943 (MGI:4429726|PMID:20159955)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:20159955 GO_REF:0000024 GO_REF:0000107 MGI:4429726 NCBI chr10:83,728,348...83,735,562
Ensembl chr10:83,728,318...83,735,705
JBrowse link
G Per2 period circadian regulator 2 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q3UV55 (MGI:4429726|PMID:20159955)
UniProt
RGD
PMID:20159955 GO_REF:0000024 MGI:4429726 NCBI chr 9:92,007,289...92,049,551
Ensembl chr 9:92,007,296...92,049,459
JBrowse link
G Pgm2 phosphoglucomutase 2 involved_in ISO MGI:95909 (PMID:24265765) RGD PMID:24265765 NCBI chr14:44,166,314...44,199,828
Ensembl chr14:44,164,425...44,199,967
JBrowse link
G Phkg1 phosphorylase kinase catalytic subunit gamma 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:26,838,822...26,854,547
Ensembl chr12:26,838,968...26,852,850
JBrowse link
G Phkg2 phosphorylase kinase catalytic subunit gamma 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:182,184,362...182,197,124
Ensembl chr 1:182,184,650...182,197,124
JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
(PMID:10683377)
(PMID:9045612)
GO_REF:0000104
UniProt
RGD
PMID:9045612 PMID:10683377 GO_REF:0000024 GO_REF:0000104 NCBI chr 1:234,460,958...234,465,961
Ensembl chr 1:234,460,652...234,465,961
JBrowse link
G Ppp1r3g protein phosphatase 1, regulatory subunit 3G acts_upstream_of ISO (PMID:21471512) RGD PMID:21471512 NCBI chr17:28,874,956...28,878,288
Ensembl chr17:28,876,482...28,877,525
JBrowse link
G Ptges3 prostaglandin E synthase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3701300 (PMID:17438133)
Ensembl
RGD
PMID:17438133 GO_REF:0000107 NCBI chr 7:490,698...507,759
Ensembl chr 7:490,656...508,084
JBrowse link
G Ugp2 UDP-glucose pyrophosphorylase 2 involved_in IEA
ISO
GO_REF:0000041
(PMID:32286295)
(PMID:31820119)
UniProt
RGD
PMID:31820119 PMID:32286295 GO_REF:0000041 NCBI chr14:95,456,330...95,497,483
Ensembl chr14:95,456,330...95,496,830
JBrowse link
heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 involved_in ISO (PMID:17761672), (PMID:36593275) RGD PMID:17761672 PMID:36593275 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Ext2 exostosin glycosyltransferase 2 involved_in ISO (PMID:17761672), (PMID:36593275) RGD PMID:17761672 PMID:36593275 NCBI chr 3:79,665,414...79,798,077
Ensembl chr 3:79,665,415...79,798,059
JBrowse link
G Hs2st1 heparan sulfate 2-O-sulfotransferase 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1934916 (PMID:11457822)
GO_Central
RGD
PMID:11457822 GO_REF:0000033 NCBI chr 2:233,508,018...233,641,769
Ensembl chr 2:233,508,021...233,641,769
JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 involved_in IDA
IBA
ISO
PMID:1379236
GO_REF:0000033
(MGI:6870964|PMID:10758005)
PMID:8483907
GO_Central
RGD
PMID:10758005 PMID:1379236 PMID:8483907 GO_REF:0000033 MGI:6870964, RGD:68801, RGD:151356652 NCBI chr18:54,136,887...54,199,545
Ensembl chr18:54,140,779...54,178,191
JBrowse link
G Ndst2 N-deacetylase and N-sulfotransferase 2 involved_in ISO
IBA
(MGI:6870964|PMID:10758005)
GO_REF:0000033
RGD
GO_Central
PMID:10758005 GO_REF:0000033 MGI:6870964 NCBI chr15:3,563,515...3,573,801
Ensembl chr15:3,563,358...3,573,801
JBrowse link
G Ndst3 N-deacetylase and N-sulfotransferase 3 involved_in ISO
IBA
(PMID:9915799)
GO_REF:0000033
RGD
GO_Central
PMID:9915799 GO_REF:0000033 NCBI chr 2:211,702,728...211,868,159
Ensembl chr 2:211,704,898...211,854,584
JBrowse link
G Ndst4 N-deacetylase and N-sulfotransferase 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:213,787,010...214,119,514
Ensembl chr 2:213,787,006...214,115,373
JBrowse link
hexose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chst15 carbohydrate sulfotransferase 15 involved_in ISO
IBA
IEA
ISS
(PMID:11572857)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
TreeGrafter
Ensembl
UniProt
PMID:11572857 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:187,028,860...187,107,908
Ensembl chr 1:187,028,970...187,107,707
JBrowse link
L-ascorbic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1a1 aldo-keto reductase family 1 member A1 involved_in
acts_upstream_of_or_within
IMP
ISO
PMID:22820017
(PMID:15769935)
MGI:4239556 (PMID:20410296)
RGD PMID:15769935 PMID:20410296 PMID:22820017 RGD:13825440 NCBI chr 5:130,092,945...130,130,277
Ensembl chr 5:130,092,732...130,113,674
JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B1 involved_in ISO MGI:5008171 (PMID:20410296) RGD PMID:20410296 NCBI chr 4:62,932,033...62,946,126
Ensembl chr 4:62,932,031...62,946,157
JBrowse link
G Gsto1 glutathione S-transferase omega 1 IMP RGD PMID:9786866 RGD:70644 NCBI chr 1:246,721,089...246,731,228
Ensembl chr 1:246,721,221...246,731,468
JBrowse link
G Gulo gulonolactone (L-) oxidase involved_in ISS
IEA
GO_REF:0000024
GO_REF:0000107
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr15:40,205,677...40,227,766
Ensembl chr15:40,205,665...40,227,874
JBrowse link
G Rgn regucalcin involved_in ISS
ISO
IBA
GO_REF:0000024
MGI:2670511 (MGI:5486063|PMID:23349732), (PMID:16585534)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:16585534 PMID:23349732 GO_REF:0000024 GO_REF:0000033 MGI:5486063 NCBI chr  X:1,619,030...1,634,456
Ensembl chr  X:1,619,032...1,634,450
JBrowse link
lactose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt1 beta-1,4-galactosyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2450889 (PMID:9155011)
Ensembl
RGD
PMID:9155011 GO_REF:0000107 NCBI chr 5:55,935,614...55,982,461
Ensembl chr 5:55,935,615...55,982,461
JBrowse link
G Lalba lactalbumin, alpha involved_in IEA
ISO
GO_REF:0000043
MGI:3513842 (PMID:8022817)
UniProt
RGD
PMID:8022817 GO_REF:0000043 NCBI chr 7:129,625,531...129,628,034
Ensembl chr 7:129,625,535...129,628,061
JBrowse link
negative regulation of gluconeogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:11479628)
UniProt
RGD
PMID:11479628 GO_REF:0000024 NCBI chr11:77,721,912...77,735,644
Ensembl chr11:77,721,912...77,735,564
JBrowse link
G C1qtnf12 C1q and TNF related 12 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:22275362)
GO_Central
RGD
PMID:22275362 GO_REF:0000033 NCBI chr 5:166,551,628...166,556,003
Ensembl chr 5:166,551,628...166,556,003
JBrowse link
G C1qtnf3 C1q and TNF related 3 acts_upstream_of_or_within
involved_in
ISO (PMID:20952387) RGD PMID:20952387 NCBI chr 2:59,917,099...59,939,519
Ensembl chr 2:59,917,188...59,939,433
JBrowse link
G Clk2 CDC-like kinase 2 involved_in ISO (MGI:4429735|PMID:20074525) RGD PMID:20074525 MGI:4429735 NCBI chr 2:174,570,614...174,582,645
Ensembl chr 2:174,570,653...174,588,985
JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5914352|PMID:28790135), (MGI:6208175|PMID:29937374)
UniProt
RGD
PMID:28790135 PMID:29937374 GO_REF:0000024 MGI:5914352 MGI:6208175 NCBI chr 7:18,529,823...18,594,092
Ensembl chr 7:18,529,823...18,594,091
JBrowse link
G Ep300 E1A binding protein p300 involved_in ISO (PMID:30193097) RGD PMID:30193097 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Erfe erythroferrone involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:91,956,971...91,964,846
Ensembl chr 9:91,956,977...91,964,846
JBrowse link
G Gck glucokinase involved_in ISO
IEA
ISS
(PMID:8878425)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:8878425 GO_REF:0000024 GO_REF:0000107 NCBI chr14:80,785,060...80,829,842
Ensembl chr14:80,785,060...80,826,995
JBrowse link
G Gid4 GID complex subunit 4 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr10:45,221,556...45,247,627
Ensembl chr10:45,245,754...45,247,621
Ensembl chr10:45,245,754...45,247,621
JBrowse link
G Il6 interleukin 6 IDA In liver RGD PMID:16308834 RGD:2306940 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
JBrowse link
G Ins2 insulin 2 involved_in ISO (PMID:8069456) RGD PMID:8069456 NCBI chr 1:197,843,277...197,992,522
Ensembl chr 1:197,843,281...197,864,775
JBrowse link
G Kat2a lysine acetyltransferase 2A involved_in ISO (PMID:16753578), (PMID:23142079) RGD PMID:16753578 PMID:23142079 NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166
JBrowse link
G Lepr leptin receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856009 (PMID:24051374)
Ensembl
RGD
PMID:24051374 GO_REF:0000107 NCBI chr 5:116,294,409...116,477,904
Ensembl chr 5:116,289,823...116,475,908
JBrowse link
G Mst1 macrophage stimulating 1 involved_in ISO (PMID:19720831) RGD PMID:19720831 NCBI chr 8:108,767,886...108,773,425
Ensembl chr 8:108,768,839...108,773,416
JBrowse link
G Mtcl2 microtubule crosslinking factor 2 involved_in ISO (MGI:4837302|PMID:20813965) RGD PMID:20813965 MGI:4837302 NCBI chr 3:145,669,102...145,741,578
Ensembl chr 3:145,675,443...145,740,871
JBrowse link
G Mup4l1 major urinary protein 4 like 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:75,221,340...75,224,797
Ensembl chr 5:75,142,157...75,564,845
JBrowse link
G Obp2a odorant binding protein 2A acts_upstream_of_or_within ISO MGI:2137691 (PMID:21135134) RGD PMID:21135134 NCBI chr 3:8,505,963...8,509,269
Ensembl chr 3:8,505,990...8,509,269
JBrowse link
G Pgp phosphoglycolate phosphatase involved_in IMP
IEA
ISO
PMID:26755581
GO_REF:0000107
(PMID:26755581)
Ensembl
RGD
PMID:26755581 PMID:26755581 GO_REF:0000107, RGD:10679995 NCBI chr10:13,495,232...13,497,858
Ensembl chr10:13,494,291...13,497,858
JBrowse link
G Serpina12 serpin family A member 12 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:22837305)
Ensembl
RGD
PMID:22837305 GO_REF:0000107 NCBI chr 6:122,952,552...122,967,271
Ensembl chr 6:122,952,552...122,967,271
JBrowse link
G Sik1 salt-inducible kinase 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:3606826|PMID:16148943)
UniProt
Ensembl
RGD
PMID:16148943 GO_REF:0000024 GO_REF:0000107 MGI:3606826 NCBI chr20:9,949,407...9,959,036
Ensembl chr20:9,947,396...9,958,991
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:23142079), (PMID:25009184) RGD PMID:23142079 PMID:25009184 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
JBrowse link
G Tcf7l2 transcription factor 7 like 2 IMP RGD PMID:21901280 RGD:152995490 NCBI chr 1:254,785,956...254,978,967
Ensembl chr 1:254,786,091...254,978,967
JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:28655758)
UniProt
Ensembl
RGD
PMID:28655758 GO_REF:0000024 GO_REF:0000107 NCBI chr10:6,880,684...6,925,355
Ensembl chr10:6,828,795...6,925,355
JBrowse link
negative regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:11289049) RGD PMID:11289049 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 IMP RGD PMID:8349040 RGD:1625425 NCBI chr 4:119,496,691...119,546,472
Ensembl chr 4:119,496,714...119,546,471
JBrowse link
G Grb10 growth factor receptor bound protein 10 involved_in IDA PMID:11223174 BHF-UCL PMID:11223174 RGD:8553640 NCBI chr14:86,495,051...86,602,800
Ensembl chr14:86,495,054...86,602,806
JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K involved_in ISO
IBA
(PMID:12556481)
GO_REF:0000033
(MGI:5294535|PMID:19250614)
RGD
GO_Central
PMID:12556481 PMID:19250614 GO_REF:0000033 MGI:5294535 NCBI chr10:60,474,262...60,495,813
Ensembl chr10:60,475,897...60,496,773
JBrowse link
G Insr insulin receptor IEP RGD PMID:26300412 RGD:11529553 NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883
JBrowse link
G Mir15b microRNA 15b acts_upstream_of ISO (PMID:26179126) RGD PMID:26179126 NCBI chr 2:153,245,200...153,245,297
Ensembl chr 2:153,245,200...153,245,297
JBrowse link
G Mir195 microRNA 195 acts_upstream_of ISO (PMID:25240198) RGD PMID:25240198 NCBI chr10:54,951,838...54,951,924
Ensembl chr10:54,951,838...54,951,924
JBrowse link
G Pask PAS domain containing serine/threonine kinase involved_in ISO
IBA
(PMID:16275910)
GO_REF:0000033
RGD
GO_Central
PMID:16275910 GO_REF:0000033 NCBI chr 9:93,844,275...93,886,036
Ensembl chr 9:93,844,278...93,885,111
JBrowse link
G Prkag3 protein kinase AMP-activated non-catalytic subunit gamma 3 acts_upstream_of_or_within ISO MGI:3055131 (PMID:15857891) RGD PMID:15857891 NCBI chr 9:76,295,715...76,304,959
Ensembl chr 9:76,295,715...76,304,959
JBrowse link
negative regulation of hyaluronan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap2a1 adaptor related protein complex 2 subunit alpha 1 involved_in ISO (PMID:23509262), (PMID:24251095) RGD PMID:23509262 PMID:24251095 NCBI chr 1:95,384,306...95,414,170
Ensembl chr 1:95,384,309...95,414,147
JBrowse link
G Cltc clathrin heavy chain involved_in ISO
ISS
IEA
(PMID:23509262), (PMID:24251095)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:23509262 PMID:24251095 GO_REF:0000024 GO_REF:0000107 NCBI chr10:71,517,661...71,574,591
Ensembl chr10:71,517,663...71,573,737
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856877 (PMID:22383528)
Ensembl
RGD
PMID:22383528 GO_REF:0000107 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO
ISS
(PMID:17324121)
GO_REF:0000024
RGD
UniProt
PMID:17324121 GO_REF:0000024 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
negative regulation of inositol phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plek pleckstrin involved_in ISO (PMID:7559487), (PMID:7782310) RGD PMID:7559487 PMID:7782310 NCBI chr14:91,397,015...91,429,693
Ensembl chr14:91,397,019...91,454,131
JBrowse link
G Prkg1 protein kinase cGMP-dependent 1 IMP RGD PMID:7535379 RGD:7777104 NCBI chr 1:228,409,605...229,638,794
Ensembl chr 1:228,408,947...229,639,080
JBrowse link
oligosaccharide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abo ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase involved_in ISO (PMID:11278752) RGD PMID:11278752 NCBI chr 3:10,162,087...10,182,835
Ensembl chr 3:10,162,096...10,191,423
JBrowse link
G B3galnt1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) acts_upstream_of_or_within ISO (PMID:9417047) RGD PMID:9417047 NCBI chr 2:153,847,297...153,877,371
Ensembl chr 2:153,846,474...153,877,332
JBrowse link
G B3galt1 Beta-1,3-galactosyltransferase 1 involved_in
acts_upstream_of_or_within
ISO (PMID:9582303)
(PMID:9417047)
RGD PMID:9417047 PMID:9582303 NCBI chr 3:52,253,413...52,826,508
Ensembl chr 3:52,253,618...52,825,313
JBrowse link
G B3galt2 Beta-1,3-galactosyltransferase 2 acts_upstream_of_or_within ISO (PMID:9417047) RGD PMID:9417047 NCBI chr13:55,389,406...55,398,419
Ensembl chr13:55,389,406...55,398,419
JBrowse link
G B4galt1 beta-1,4-galactosyltransferase 1 acts_upstream_of_or_within
involved_in
TAS
ISO
(PMID:9813328)
(PMID:2120039)
RGD PMID:2120039 PMID:9813328 PMID:12098497 RGD:1302270 NCBI chr 5:55,935,614...55,982,461
Ensembl chr 5:55,935,615...55,982,461
JBrowse link
G Fut1 fucosyltransferase 1 involved_in ISO MGI:2183219 (PMID:11713270) RGD PMID:11713270 NCBI chr 1:96,086,934...96,090,352
Ensembl chr 1:96,086,635...96,090,616
JBrowse link
G Fut10 fucosyltransferase 10 involved_in IEA
ISO
GO_REF:0000107
(PMID:23986452)
Ensembl
RGD
PMID:23986452 GO_REF:0000107 NCBI chr16:60,868,761...60,958,762
Ensembl chr16:60,877,952...60,958,683
JBrowse link
G Fut2 fucosyltransferase 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:11323419)
Ensembl
RGD
PMID:11323419 GO_REF:0000107 NCBI chr 1:96,119,549...96,139,567
Ensembl chr 1:96,119,371...96,140,360
JBrowse link
G Fut9 fucosyltransferase 9 involved_in ISO MGI:3044951 (PMID:23986452) RGD PMID:23986452 NCBI chr 5:39,351,815...39,565,256
Ensembl chr 5:39,351,819...39,565,130
JBrowse link
G Mgat2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:87,656,360...87,658,849
Ensembl chr 6:87,656,349...87,658,177
JBrowse link
G Mpdu1 mannose-P-dolichol utilization defect 1 involved_in ISO
IBA
UniProtKB:O75352 (PMID:11179430), (PMID:11733564)
GO_REF:0000033
RGD
GO_Central
PMID:11179430 PMID:11733564 GO_REF:0000033 NCBI chr10:54,374,719...54,380,301
Ensembl chr10:54,374,725...54,380,447
JBrowse link
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 involved_in ISO
IEA
(PMID:9266697)
GO_REF:0000107
RGD
Ensembl
PMID:9266697 GO_REF:0000107 NCBI chr19:38,888,851...38,939,874
Ensembl chr19:38,923,999...38,939,869
JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in ISO (PMID:8288606) RGD PMID:8288606 NCBI chr 8:33,415,666...33,465,319
Ensembl chr 8:33,415,671...33,524,389
JBrowse link
G St6galnac1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:10788794)
GO_Central
RGD
PMID:10788794 GO_REF:0000033 NCBI chr10:101,972,656...101,983,053
Ensembl chr10:101,972,668...101,983,053
JBrowse link
G St6galnac5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in ISO (MGI:5284811|PMID:12668675) RGD PMID:12668675 MGI:5284811 NCBI chr 2:241,741,933...241,911,214
Ensembl chr 2:241,742,688...241,911,208
JBrowse link
G St6galnac6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in ISO (MGI:5284811|PMID:12668675) RGD PMID:12668675 MGI:5284811 NCBI chr 3:15,894,275...15,907,502
Ensembl chr 3:15,885,968...15,907,496
JBrowse link
pentose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G G6pd glucose-6-phosphate dehydrogenase involved_in
acts_upstream_of_or_within
ISO (PMID:5643703)
MGI:2182739 (PMID:14757696), (PMID:15998684), (PMID:1953691), (PMID:7439685), (PMID:8491670), (PMID:9330624), (PMID:9539108), (PMID:9627357)
RGD PMID:1953691 PMID:5643703 PMID:7439685 PMID:8491670 PMID:9330624 More... NCBI chr  X:152,201,081...152,220,863
Ensembl chr  X:152,201,098...152,220,801
JBrowse link
G Pgd phosphogluconate dehydrogenase acts_upstream_of_or_within ISO (PMID:8491670) RGD PMID:8491670 NCBI chr 5:159,582,746...159,598,945
Ensembl chr 5:159,561,271...159,742,778
JBrowse link
polysaccharide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 involved_in ISO (PMID:12907669) RGD PMID:12907669 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Ext2 exostosin glycosyltransferase 2 involved_in ISO (PMID:12907669) RGD PMID:12907669 NCBI chr 3:79,665,414...79,798,077
Ensembl chr 3:79,665,415...79,798,059
JBrowse link
G Fut9 fucosyltransferase 9 involved_in ISS
ISO
GO_REF:0000024
(MGI:3041940|PMID:15121843)
UniProt
RGD
PMID:15121843 GO_REF:0000024 MGI:3041940 NCBI chr 5:39,351,815...39,565,256
Ensembl chr 5:39,351,819...39,565,130
JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 acts_upstream_of_or_within ISO MGI:1888706 (PMID:10852901) RGD PMID:10852901 NCBI chr18:54,136,887...54,199,545
Ensembl chr18:54,140,779...54,178,191
JBrowse link
positive regulation of gluconeogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arpp19 cAMP-regulated phosphoprotein 19 involved_in ISO (PMID:9653196) RGD PMID:9653196 NCBI chr 8:75,779,640...75,802,474
Ensembl chr 8:75,779,523...75,802,452
Ensembl chr 8:75,779,523...75,802,452
JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in ISO (MGI:6208175|PMID:29937374) RGD PMID:29937374 MGI:6208175 NCBI chr 7:18,529,823...18,594,092
Ensembl chr 7:18,529,823...18,594,091
JBrowse link
G Cyp2j4 cytochrome P450, family 2, subfamily j, polypeptide 4 IMP RGD PMID:29656108 RGD:150520032 NCBI chr 5:111,179,981...111,207,490
Ensembl chr 5:111,178,703...111,244,794
JBrowse link
G Ddb1 damage-specific DNA binding protein 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5914352|PMID:28790135)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:28790135 GO_REF:0000024 GO_REF:0000107 MGI:5914352 NCBI chr 1:207,252,890...207,278,685
Ensembl chr 1:207,252,890...207,278,676
JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 IMP RGD PMID:17526931 RGD:10400884 NCBI chr 1:153,454,078...153,484,432
Ensembl chr 1:153,454,080...153,484,428
JBrowse link
G Foxo1 forkhead box O1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:12783775)
(PMID:17024043), (PMID:25009184)
UniProt
RGD
PMID:12783775 PMID:17024043 PMID:25009184 GO_REF:0000024 NCBI chr 2:136,312,168...136,390,603
Ensembl chr 2:136,312,168...136,387,790
JBrowse link
G Gcg glucagon involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:24051374)
Ensembl
RGD
PMID:24051374 GO_REF:0000107 NCBI chr 3:47,113,914...47,122,958
Ensembl chr 3:47,113,914...47,122,929
JBrowse link
G Gpt glutamic--pyruvic transaminase IDA RGD PMID:25865565 RGD:11342811 NCBI chr 7:108,416,646...108,419,495
Ensembl chr 7:108,416,642...108,419,494
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IMP RGD PMID:24177414 RGD:10445837 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha IMP RGD PMID:16893891 PMID:24177414 RGD:1624992, RGD:10445837 NCBI chr 3:152,186,787...152,248,320
Ensembl chr 3:152,186,787...152,248,320
JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO MGI:95674 (PMID:24051374) RGD PMID:24051374 NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166
JBrowse link
G Kat2b lysine acetyltransferase 2B acts_upstream_of_or_within ISO MGI:2155884|MGI:95674 (PMID:24051374) RGD PMID:24051374 NCBI chr 9:6,562,525...6,667,064
Ensembl chr 9:6,562,288...6,667,064
JBrowse link
G Nnmt nicotinamide N-methyltransferase involved_in ISO (MGI:5708799|PMID:26168293) RGD PMID:26168293 MGI:5708799 NCBI chr 8:48,928,663...48,947,734
Ensembl chr 8:48,933,598...48,946,655
JBrowse link
G Oprm1 opioid receptor, mu 1 IMP RGD PMID:34270714 RGD:401831046 NCBI chr 1:43,160,057...43,413,409
Ensembl chr 1:43,160,057...43,413,409
JBrowse link
G Ppara peroxisome proliferator activated receptor alpha acts_upstream_of_or_within ISO MGI:1857774 (PMID:15232616) RGD PMID:15232616 NCBI chr 7:116,832,405...116,900,878
Ensembl chr 7:116,832,756...116,895,346
JBrowse link
G Ppp4r3a protein phosphatase 4, regulatory subunit 3A acts_upstream_of_or_within ISO (PMID:20876121) RGD PMID:20876121 NCBI chr 6:120,302,508...120,365,907
Ensembl chr 6:120,302,511...120,365,891
JBrowse link
G Ppp4r3b protein phosphatase 4, regulatory subunit 3B acts_upstream_of_or_within ISO (PMID:20876121) RGD PMID:20876121 NCBI chr14:102,917,043...102,965,210
Ensembl chr14:102,917,443...103,068,192
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in NAS PMID:11903059 UniProt PMID:11903059 RGD:8554594 NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:54,240,137...54,275,978
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in IEA
ISO
GO_REF:0000107
(PMID:23292513)
Ensembl
RGD
PMID:23292513 GO_REF:0000107 NCBI chr19:24,155,081...24,178,430
Ensembl chr19:24,155,090...24,178,430
JBrowse link
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:4941441|PMID:20484139)
UniProt
Ensembl
RGD
PMID:20484139 GO_REF:0000024 GO_REF:0000107 MGI:4941441 NCBI chr18:61,229,012...61,294,662
Ensembl chr18:61,229,014...61,294,627
JBrowse link
G Sirt1 sirtuin 1 involved_in IMP
IEA
ISO
GO_REF:0000107
(PMID:15692560), (PMID:23142079), (PMID:30193097)
(MGI:5708799|PMID:26168293)
Ensembl
RGD
PMID:15692560 PMID:23142079 PMID:26168293 PMID:30193097 PMID:21212096 GO_REF:0000107 MGI:5708799, RGD:9585757 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260
JBrowse link
G Sirt7 sirtuin 7 involved_in ISS
ISO
GO_REF:0000024
(PMID:28655758)
UniProt
RGD
PMID:28655758 GO_REF:0000024 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172
JBrowse link
G Stk11 serine/threonine kinase 11 IMP RGD PMID:17083919 RGD:2291956 NCBI chr 7:9,574,553...9,591,315
Ensembl chr 7:9,575,269...9,591,315
JBrowse link
G Supt20h SPT20 homolog, SAGA complex component acts_upstream_of_or_within ISO MGI:95674 (PMID:24051374) RGD PMID:24051374 NCBI chr 2:138,897,316...138,930,493
Ensembl chr 2:138,897,416...138,930,495
JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO MGI:5430317 (PMID:23260145) RGD PMID:23260145 NCBI chr 1:254,785,956...254,978,967
Ensembl chr 1:254,786,091...254,978,967
JBrowse link
G Wdr5 WD repeat domain 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1343094|MGI:95674 (PMID:24051374)
Ensembl
RGD
PMID:24051374 GO_REF:0000107 NCBI chr 3:10,836,964...10,856,682
Ensembl chr 3:10,837,025...10,856,671
JBrowse link
positive regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 involved_in ISO
IEA
(PMID:16814735)
GO_REF:0000107
RGD
Ensembl
PMID:16814735 GO_REF:0000107 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921
JBrowse link
G Akt2 AKT serine/threonine kinase 2 involved_in ISO
IEA
(PMID:16814735)
GO_REF:0000107
RGD
Ensembl
PMID:16814735 GO_REF:0000107 NCBI chr 1:82,877,228...82,933,828
Ensembl chr 1:82,883,547...82,933,817
JBrowse link
G C1qtnf2 C1q and TNF related 2 acts_upstream_of_or_within ISO (PMID:15231994) RGD PMID:15231994 NCBI chr10:27,941,948...27,958,926
Ensembl chr10:27,941,948...27,959,185
JBrowse link
G Cd36 CD36 molecule IDA RGD PMID:14640889 RGD:1600636 NCBI chr 4:17,317,343...17,410,084
Ensembl chr 4:17,354,466...17,513,903
JBrowse link
G Dyrk2 dual specificity tyrosine phosphorylation regulated kinase 2 involved_in ISO (PMID:11311121) RGD PMID:11311121 NCBI chr 7:54,348,724...54,381,363
Ensembl chr 7:54,349,610...54,380,106
JBrowse link
G Epm2aip1 EPM2A interacting protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:3857785 (PMID:24142699)
GO_Central
RGD
PMID:24142699 GO_REF:0000033 NCBI chr 8:111,233,871...111,241,219
Ensembl chr 8:111,233,826...111,241,871
JBrowse link
G Esrrb estrogen-related receptor beta involved_in IDA
ISO
PMID:24481529
(MGI:5905261|PMID:24481529)
RGD PMID:24481529 PMID:24481529 MGI:5905261, RGD:12910990 NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791
JBrowse link
G Gck glucokinase involved_in ISO
IEA
ISS
(PMID:8878425)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:8878425 GO_REF:0000024 GO_REF:0000107 NCBI chr14:80,785,060...80,829,842
Ensembl chr14:80,785,060...80,826,995
JBrowse link
G Igf1 insulin-like growth factor 1 involved_in ISO
IEA
ISS
(PMID:21076856)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21076856 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Igf2 insulin-like growth factor 2 acts_upstream_of ISO (MGI:4438697|PMID:20032056) RGD PMID:20032056 MGI:4438697 NCBI chr 1:197,814,409...197,831,802
Ensembl chr 1:197,814,410...197,823,018
JBrowse link
G Ins2 insulin 2 involved_in ISO (PMID:17925406) RGD PMID:17925406 NCBI chr 1:197,843,277...197,992,522
Ensembl chr 1:197,843,281...197,864,775
JBrowse link
G Insr insulin receptor involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
(MGI:4438697|PMID:20032056)
(PMID:17925406)
Ensembl
RGD
PMID:17925406 PMID:20032056 GO_REF:0000107 MGI:4438697 NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883
JBrowse link
G Irs1 insulin receptor substrate 1 involved_in ISO
IEA
(PMID:16814735)
GO_REF:0000107
RGD
Ensembl
PMID:16814735 GO_REF:0000107 NCBI chr 9:83,552,964...83,605,797
Ensembl chr 9:83,548,944...83,606,122
JBrowse link
G Irs2 insulin receptor substrate 2 involved_in ISO (PMID:16814735) RGD PMID:16814735 NCBI chr16:78,488,249...78,512,482
Ensembl chr16:78,485,045...78,512,482
JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E involved_in IMP PMID:15752363 UniProt PMID:15752363 RGD:2306166 NCBI chr15:28,348,443...28,349,603
Ensembl chr15:28,347,854...28,349,603
JBrowse link
G Ppp1r3g protein phosphatase 1, regulatory subunit 3G acts_upstream_of_or_within ISO (PMID:21471512) RGD PMID:21471512 NCBI chr17:28,874,956...28,878,288
Ensembl chr17:28,876,482...28,877,525
JBrowse link
G Pth parathyroid hormone involved_in ISS
ISO
GO_REF:0000024
(PMID:21076856)
UniProt
RGD
PMID:21076856 GO_REF:0000024 NCBI chr 1:167,508,121...167,511,530
Ensembl chr 1:167,508,598...167,511,530
JBrowse link
G Sorbs1 sorbin and SH3 domain containing 1 involved_in ISO (MGI:3690172|PMID:11001060) RGD PMID:11001060 MGI:3690172 NCBI chr 1:239,107,882...239,330,276
Ensembl chr 1:239,108,777...239,330,169
JBrowse link
positive regulation of hyaluronan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egf epidermal growth factor involved_in ISO
IEA
(PMID:17324121)
GO_REF:0000107
RGD
Ensembl
PMID:17324121 GO_REF:0000107 NCBI chr 2:218,219,408...218,302,359
Ensembl chr 2:218,219,415...218,302,064
JBrowse link
G Has2 hyaluronan synthase 2 IDA
IMP
RGD PMID:12186949 PMID:17080198 RGD:9588629, RGD:9588632 NCBI chr 7:88,113,326...88,139,337
Ensembl chr 7:88,113,326...88,128,933
JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 involved_in ISO
IEA
(PMID:17324121)
GO_REF:0000107
RGD
Ensembl
PMID:17324121 GO_REF:0000107 NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404
JBrowse link
G Pdgfb platelet derived growth factor subunit B involved_in ISO
IEA
ISS
(PMID:17324121)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:17324121 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984
JBrowse link
G Ptger4 prostaglandin E receptor 4 IMP RGD PMID:17080198 RGD:9588632 NCBI chr 2:54,330,563...54,347,451
Ensembl chr 2:54,335,424...54,346,670
JBrowse link
positive regulation of inositol phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcyap1r1 ADCYAP receptor type I IDA RGD PMID:8943280 RGD:2315982 NCBI chr 4:84,593,558...84,642,700
Ensembl chr 4:84,593,892...84,642,700
JBrowse link
G Avpr1b arginine vasopressin receptor 1B involved_in ISO
IEA
(PMID:9322919)
GO_REF:0000107
RGD
Ensembl
PMID:9322919 GO_REF:0000107 NCBI chr13:43,046,531...43,059,046
Ensembl chr13:43,046,267...43,057,792
JBrowse link
G Cd244 CD244 molecule involved_in ISO (PMID:8376943) RGD PMID:8376943 NCBI chr13:84,051,339...84,082,864
Ensembl chr13:84,052,493...84,074,492
JBrowse link
G Mas1 MAS1 proto-oncogene, G protein-coupled receptor IDA RGD PMID:1332507 RGD:2316794 NCBI chr 1:47,879,956...47,911,500
Ensembl chr 1:47,880,309...47,911,709
JBrowse link
G Ntsr1 neurotensin receptor 1 IMP RGD PMID:11861328 RGD:9743897 NCBI chr 3:167,606,215...167,656,371
Ensembl chr 3:167,606,215...167,656,377
JBrowse link
G Ptafr platelet-activating factor receptor IDA RGD PMID:8798508 RGD:9999203 NCBI chr 5:144,765,770...144,795,057
Ensembl chr 5:144,765,976...144,795,251
JBrowse link
G Pth parathyroid hormone involved_in ISO (PMID:11604398) RGD PMID:11604398 NCBI chr 1:167,508,121...167,511,530
Ensembl chr 1:167,508,598...167,511,530
JBrowse link
G Pth1r parathyroid hormone 1 receptor involved_in IDA PMID:19608645 BHF-UCL PMID:19608645 RGD:8553376 NCBI chr 8:110,693,910...110,725,458
Ensembl chr 8:110,697,485...110,719,729
JBrowse link
G Snca synuclein alpha involved_in ISO
IEA
(PMID:15641770)
GO_REF:0000107
RGD
Ensembl
PMID:15641770 GO_REF:0000107 NCBI chr 4:89,696,420...89,797,240
Ensembl chr 4:89,696,420...89,796,262
JBrowse link
positive regulation of inositol trisphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gper1 G protein-coupled estrogen receptor 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:15705806)
UniProt
Ensembl
RGD
PMID:15705806 GO_REF:0000024 GO_REF:0000107 NCBI chr12:15,217,217...15,222,679
Ensembl chr12:15,217,442...15,221,889
JBrowse link
G Lhcgr luteinizing hormone/choriogonadotropin receptor involved_in IEA
ISO
GO_REF:0000107
(MGI:5318037|PMID:10493819)
Ensembl
RGD
PMID:10493819 GO_REF:0000107 MGI:5318037 NCBI chr 6:5,661,871...5,728,109
Ensembl chr 6:5,661,871...5,724,521
JBrowse link
G Myh9 myosin, heavy chain 9 IMP RGD PMID:20068007 RGD:6902910 NCBI chr 7:109,343,718...109,424,457
Ensembl chr 7:109,343,706...109,424,457
JBrowse link
G P2ry1 purinergic receptor P2Y1 involved_in IDA PMID:11390975 BHF-UCL PMID:11390975 RGD:8553380 NCBI chr 2:145,241,975...145,248,186
Ensembl chr 2:145,241,849...145,248,457
JBrowse link
G P2ry6 pyrimidinergic receptor P2Y6 involved_in ISO (PMID:8670200) RGD PMID:8670200 NCBI chr 1:155,295,110...155,330,610
Ensembl chr 1:155,295,111...155,330,808
JBrowse link
G Plcd1 phospholipase C, delta 1 IMP RGD PMID:16709602 RGD:2300424 NCBI chr 8:118,795,196...118,818,186
Ensembl chr 8:118,795,201...118,818,186
JBrowse link
G Pou1f1 POU class 1 homeobox 1 acts_upstream_of_or_within ISO MGI:1856024|MGI:1856025 (PMID:11371619) RGD PMID:11371619 NCBI chr11:3,316,818...3,334,804
Ensembl chr11:3,317,058...3,334,801
JBrowse link
regulation of gluconeogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain involved_in ISO
IEA
(MGI:4412440|PMID:18459129)
GO_REF:0000107
RGD
Ensembl
PMID:18459129 GO_REF:0000107 MGI:4412440 NCBI chr 2:242,858,865...242,883,036
Ensembl chr 2:242,858,865...242,883,147
JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in ISO (MGI:6208175|PMID:29937374) RGD PMID:29937374 MGI:6208175 NCBI chr 7:18,529,823...18,594,092
Ensembl chr 7:18,529,823...18,594,091
JBrowse link
G Dgkq diacylglycerol kinase, theta involved_in ISO (PMID:23767959) RGD PMID:23767959 NCBI chr14:1,059,125...1,073,131
Ensembl chr14:1,059,170...1,073,131
JBrowse link
G Fbp1 fructose-bisphosphatase 1 involved_in ISO
IEA
ISS
(PMID:7558035)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:7558035 GO_REF:0000024 GO_REF:0000107 NCBI chr17:2,207,271...2,230,076
Ensembl chr17:2,208,031...2,230,071
JBrowse link
G Foxo1 forkhead box O1 acts_upstream_of_or_within ISO (PMID:18497885) RGD PMID:18497885 NCBI chr 2:136,312,168...136,390,603
Ensembl chr 2:136,312,168...136,387,790
JBrowse link
G Gnmt glycine N-methyltransferase involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
GO_REF:0000033
MGI:3842652 (PMID:17937387)
GO_REF:0000118
GO_Central
RGD
TreeGrafter
PMID:17937387 GO_REF:0000033 GO_REF:0000118 NCBI chr 9:14,254,675...14,258,028
Ensembl chr 9:14,254,675...14,258,434
JBrowse link
G Insr insulin receptor IEP RGD PMID:29896241 RGD:14700925 NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883
JBrowse link
G Lep leptin acts_upstream_of_or_within ISO MGI:1856424 (PMID:16513828) RGD PMID:16513828 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
JBrowse link
G Nln neurolysin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4125183 (PMID:24719317)
Ensembl
RGD
PMID:24719317 GO_REF:0000107 NCBI chr 2:35,133,634...35,232,927
Ensembl chr 2:35,134,145...35,232,914
JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857745 (PMID:7628695)
Ensembl
RGD
PMID:7628695 GO_REF:0000107 NCBI chr18:31,271,681...31,393,320
Ensembl chr18:31,271,681...31,393,375
JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5495336|PMID:23395176)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:23395176 GO_REF:0000024 GO_REF:0000107 MGI:5495336 NCBI chr  X:66,771,278...66,816,148
Ensembl chr  X:66,771,349...66,816,146
JBrowse link
G Pdk2 pyruvate dehydrogenase kinase 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:5428826|PMID:22360721)
UniProt
Ensembl
RGD
PMID:22360721 GO_REF:0000024 GO_REF:0000107 MGI:5428826 NCBI chr10:79,972,550...79,987,074
Ensembl chr10:79,972,556...79,987,085
JBrowse link
G Ranbp2 RAN binding protein 2 acts_upstream_of_or_within ISO MGI:3693886 (PMID:17069463) RGD PMID:17069463 NCBI chr20:26,442,156...26,493,481
Ensembl chr20:26,442,217...26,493,481
JBrowse link
G Sesn2 sestrin 2 acts_upstream_of_or_within ISO MGI:3587950 (PMID:22958918) RGD PMID:22958918 NCBI chr 5:144,702,287...144,721,241
Ensembl chr 5:144,701,530...144,721,260
JBrowse link
G Slc35b4 solute carrier family 35 member B4 acts_upstream_of_or_within ISO (PMID:21507882) RGD PMID:21507882 NCBI chr 4:62,776,993...62,799,013
Ensembl chr 4:62,776,993...62,799,003
JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO MGI:4431951 (PMID:23028378) RGD PMID:23028378 NCBI chr 1:254,785,956...254,978,967
Ensembl chr 1:254,786,091...254,978,967
JBrowse link
G Zfp692 zinc finger protein 692 involved_in ISS
ISO
GO_REF:0000024
(PMID:21910974)
UniProt
RGD
PMID:21910974 GO_REF:0000024 NCBI chr10:42,484,576...42,496,573
Ensembl chr10:42,488,588...42,496,018
JBrowse link
regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 involved_in ISO (PMID:8940145) RGD PMID:8940145 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921
JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K involved_in ISO (MGI:5294535|PMID:19250614) RGD PMID:19250614 MGI:5294535 NCBI chr10:60,474,262...60,495,813
Ensembl chr10:60,475,897...60,496,773
JBrowse link
G Mtor mechanistic target of rapamycin kinase IDA
IMP
RGD PMID:17142137 PMID:17142137 RGD:1625611, RGD:1625611 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311
JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha IDA RGD PMID:7720853 RGD:2304267 NCBI chr 1:201,485,117...201,488,734
Ensembl chr 1:201,485,085...201,497,327
JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta IDA RGD PMID:7720853 RGD:2304267 NCBI chr 6:23,958,813...23,992,841
Ensembl chr 6:23,960,998...23,992,824
JBrowse link
G Ppp1r3a protein phosphatase 1, regulatory subunit 3A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:42,937,353...42,980,195
Ensembl chr 4:42,939,599...42,980,638
JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:7720853 PMID:11716774 GO_REF:0000033, RGD:2304267, RGD:2306167 NCBI chr16:56,830,011...56,842,395
Ensembl chr16:56,829,660...56,842,406
JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C involved_in IDA
IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
RGD
PMID:11716774 GO_REF:0000033 GO_REF:0000118, RGD:2306167 NCBI chr 1:234,460,958...234,465,961
Ensembl chr 1:234,460,652...234,465,961
JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:11716774 GO_REF:0000033, RGD:2306167 NCBI chr 3:165,502,384...165,505,455
Ensembl chr 3:165,502,384...165,505,455
JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E involved_in IDA
IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
RGD
PMID:15752363 GO_REF:0000033 GO_REF:0000118, RGD:2306166 NCBI chr15:28,348,443...28,349,603
Ensembl chr15:28,347,854...28,349,603
JBrowse link
G Ppp1r3f protein phosphatase 1, regulatory subunit 3F acts_upstream_of_or_within ISO (PMID:21668450) RGD PMID:21668450 NCBI chr  X:14,915,740...14,945,249
Ensembl chr  X:14,929,323...14,945,193
JBrowse link
G Ppp1r3g protein phosphatase 1, regulatory subunit 3G involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:28,874,956...28,878,288
Ensembl chr17:28,876,482...28,877,525
JBrowse link
regulation of hyaluronan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO MGI:1856877 (PMID:22383528) RGD PMID:22383528 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749
JBrowse link
sorbitol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b1 aldo-keto reductase family 1 member B1 IMP RGD PMID:6690344 PMID:21376710 RGD:1626096, RGD:8548687 NCBI chr 4:62,932,033...62,946,126
Ensembl chr 4:62,932,031...62,946,157
JBrowse link
sucrose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbp1 fructose-bisphosphatase 1 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr17:2,207,271...2,230,076
Ensembl chr17:2,208,031...2,230,071
JBrowse link
G Fbp2 fructose-bisphosphatase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:2,236,088...2,253,702
Ensembl chr17:2,236,336...2,253,698
JBrowse link
xylan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casd1 CAS1 domain containing 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 4:32,659,196...32,739,228
Ensembl chr 4:32,658,748...32,739,202
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      primary metabolic process 10352
        carbohydrate metabolic process 646
          carbohydrate biosynthetic process 217
            D-glucarate biosynthetic process 0
            D-gluconate biosynthetic process 0
            L-idonate biosynthetic process 0
            alditol biosynthetic process + 7
            mannosylglycerate biosynthetic process 0
            monosaccharide biosynthetic process + 107
            oligosaccharide biosynthetic process + 19
            photosynthesis, dark reaction + 0
            polysaccharide biosynthetic process + 71
            regulation of carbohydrate biosynthetic process + 117
paths to the root