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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle organization
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Accession:GO:0016050 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vesicle.
Synonyms:exact_synonym: vesicle organisation
 related_synonym: vesicle organization and biogenesis


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vesicle organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Als2 alsin Rho guanine nucleotide exchange factor JBrowse link 1 59,162,756 59,237,231 RGD:2290270
G Cadps Ca2+-dependent secretion activator JBrowse link 14 12,372,560 12,823,339 RGD:2290270
G Cav2 caveolin 2 JBrowse link 6 17,281,185 17,289,130 RGD:2290270
G Cd2ap CD2-associated protein JBrowse link 17 42,748,887 42,876,707 RGD:2290270
G Fbxo5 F-box protein 5 JBrowse link 10 5,799,158 5,805,465 RGD:2290270
G Plekhf1 pleckstrin homology domain containing, family F (with FYVE domain) member 1 JBrowse link 7 38,220,654 38,227,994 RGD:2290270
G Sar1a secretion associated Ras related GTPase 1A JBrowse link 10 61,680,285 61,693,297 RGD:2290270
G Sar1b secretion associated Ras related GTPase 1B JBrowse link 11 51,763,663 51,791,953 RGD:2290270
G Snx11 sorting nexin 11 JBrowse link 11 96,767,546 96,777,712 RGD:2290270
G Sort1 sortilin 1 JBrowse link 3 108,283,974 108,361,519 RGD:2290270
G Wasl WASP like actin nucleation promoting factor JBrowse link 6 24,613,810 24,664,995 RGD:2290270
acrosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acrbp proacrosin binding protein JBrowse link 6 125,049,927 125,063,265 RGD:2290270
G Agfg1 ArfGAP with FG repeats 1 JBrowse link 1 82,839,017 82,901,001 RGD:2290270
G AU040320 expressed sequence AU040320 JBrowse link 4 126,753,547 126,869,694 RGD:2290270
G Ccdc136 coiled-coil domain containing 136 JBrowse link 6 29,396,574 29,426,995 RGD:2290270
G Eqtn equatorin, sperm acrosome associated JBrowse link 4 94,875,697 94,929,953 RGD:2290270
G Mfsd14a major facilitator superfamily domain containing 14A JBrowse link 3 116,631,164 116,662,688 RGD:2290270
G Nectin2 nectin cell adhesion molecule 2 JBrowse link 7 19,716,644 19,749,573 RGD:2290270
G Pafah1b1 platelet-activating factor acetylhydrolase, isoform 1b, subunit 1 JBrowse link 11 74,673,949 74,724,384 RGD:2290270
G Pla2g3 phospholipase A2, group III JBrowse link 11 3,488,158 3,499,346 RGD:2290270
G Rfx2 regulatory factor X, 2 (influences HLA class II expression) JBrowse link 17 56,775,897 56,831,008 RGD:2290270
G Sec23ip Sec23 interacting protein JBrowse link 7 128,744,862 128,784,836 RGD:2290270
G Spaca1 sperm acrosome associated 1 JBrowse link 4 34,024,872 34,050,067 RGD:2290270
G Spink2 serine peptidase inhibitor, Kazal type 2 JBrowse link 5 77,205,106 77,216,258 RGD:2290270
G Tbc1d20 TBC1 domain family, member 20 JBrowse link 2 152,293,826 152,313,994 RGD:2290270
G Tbpl1 TATA box binding protein-like 1 JBrowse link 10 22,703,877 22,732,666 RGD:2290270
G Tmf1 TATA element modulatory factor 1 JBrowse link 6 97,151,950 97,179,151 RGD:2290270
G Zpbp zona pellucida binding protein JBrowse link 11 11,279,624 11,464,223 RGD:2290270
G Zpbp2 zona pellucida binding protein 2 JBrowse link 11 98,551,097 98,558,665 RGD:2290270
autophagosome-endosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rubcnl RUN and cysteine rich domain containing beclin 1 interacting protein like JBrowse link 14 75,015,968 75,052,537 RGD:2290270
autophagosome-lysosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rubcnl RUN and cysteine rich domain containing beclin 1 interacting protein like JBrowse link 14 75,015,968 75,052,537 RGD:2290270
calcium-dependent activation of synaptic vesicle fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prrt2 proline-rich transmembrane protein 2 JBrowse link 7 127,017,542 127,021,450 RGD:2290270
G Syt1 synaptotagmin I JBrowse link 10 108,497,650 109,010,980 RGD:2290270
G Syt2 synaptotagmin II JBrowse link 1 134,646,534 134,753,149 RGD:2290270
G Syt7 synaptotagmin VII JBrowse link 19 10,388,802 10,453,181 RGD:2290270
G Syt9 synaptotagmin IX JBrowse link 7 107,370,349 107,548,656 RGD:2290270
COPI coating of Golgi vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arfgap2 ADP-ribosylation factor GTPase activating protein 2 JBrowse link 2 91,265,115 91,277,371 RGD:2290270
G Arfgap3 ADP-ribosylation factor GTPase activating protein 3 JBrowse link 15 83,299,739 83,350,375 RGD:2290270
G Gbf1 golgi-specific brefeldin A-resistance factor 1 JBrowse link 19 46,152,509 46,286,510 RGD:2290270
G Tmed9 transmembrane p24 trafficking protein 9 JBrowse link 13 55,593,135 55,597,697 RGD:2290270
COPI-coated vesicle budding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link 12 85,340,614 85,374,717 RGD:2290270
COPII vesicle coating term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cul3 cullin 3 JBrowse link 1 80,264,923 80,340,690 RGD:2290270
G Klhl12 kelch-like 12 JBrowse link 1 134,455,495 134,490,880 RGD:2290270
G Klhl21 kelch-like 21 JBrowse link 4 152,008,891 152,017,677 RGD:2290270
G Pdcd6 programmed cell death 6 JBrowse link 13 74,303,121 74,317,326 RGD:2290270
G Pef1 penta-EF hand domain containing 1 JBrowse link 4 130,107,556 130,128,134 RGD:2290270
G Preb prolactin regulatory element binding JBrowse link 5 30,951,667 30,960,356 RGD:2290270
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor JBrowse link 2 26,409,431 26,446,293 RGD:2290270
G Sec16b SEC16 homolog B (S. cerevisiae) JBrowse link 1 157,506,733 157,568,425 RGD:2290270
COPII-coated vesicle budding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link 6 113,728,052 113,740,681 RGD:2290270
G Sec23a SEC23 homolog A, COPII coat complex component JBrowse link 12 58,958,384 59,012,017 RGD:2290270
G Sec23b SEC23 homolog B, COPII coat complex component JBrowse link 2 144,556,229 144,590,753 RGD:2290270
G Sec31a Sec31 homolog A (S. cerevisiae) JBrowse link 5 100,361,649 100,416,273 RGD:2290270
G Sec31b Sec31 homolog B (S. cerevisiae) JBrowse link 19 44,516,957 44,545,848 RGD:2290270
G Vapa vesicle-associated membrane protein, associated protein A JBrowse link 17 65,580,053 65,616,462 RGD:2290270
G Vapb vesicle-associated membrane protein, associated protein B and C JBrowse link 2 173,737,571 173,784,336 RGD:2290270
COPII-coated vesicle cargo loading term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mia3 melanoma inhibitory activity 3 JBrowse link 1 183,326,236 183,369,565 RGD:2290270
G Rab1a RAB1A, member RAS oncogene family JBrowse link 11 20,201,412 20,226,856 RGD:2290270
G Sar1a secretion associated Ras related GTPase 1A JBrowse link 10 61,680,285 61,693,297 RGD:2290270
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link 6 113,728,052 113,740,681 RGD:2290270
G Sec23a SEC23 homolog A, COPII coat complex component JBrowse link 12 58,958,384 59,012,017 RGD:2290270
G Sec23b SEC23 homolog B, COPII coat complex component JBrowse link 2 144,556,229 144,590,753 RGD:2290270
G Sec24a Sec24 related gene family, member A (S. cerevisiae) JBrowse link 11 51,692,263 51,757,161 RGD:2290270
G Sec24b Sec24 related gene family, member B (S. cerevisiae) JBrowse link 3 129,982,759 130,061,599 RGD:2290270
G Sec24c Sec24 related gene family, member C (S. cerevisiae) JBrowse link 14 20,674,285 20,694,852 RGD:2290270
G Sec24d Sec24 related gene family, member D (S. cerevisiae) JBrowse link 3 123,264,801 123,365,641 RGD:2290270
G Sec31a Sec31 homolog A (S. cerevisiae) JBrowse link 5 100,361,649 100,416,273 RGD:2290270
G Sec31b Sec31 homolog B (S. cerevisiae) JBrowse link 19 44,516,957 44,545,848 RGD:2290270
G Tbc1d20 TBC1 domain family, member 20 JBrowse link 2 152,293,826 152,313,994 RGD:2290270
dense core granule maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Baiap3 BAI1-associated protein 3 JBrowse link 17 25,242,659 25,256,364 RGD:2290270
G Ptprn protein tyrosine phosphatase, receptor type, N JBrowse link 1 75,247,035 75,264,497 RGD:2290270
G Snx19 sorting nexin 19 JBrowse link 9 30,426,988 30,467,141 RGD:2290270
endosomal lumen acidification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aqp11 aquaporin 11 JBrowse link 7 97,726,379 97,738,247 RGD:2290270
G Fasl Fas ligand (TNF superfamily, member 6) JBrowse link 1 161,780,691 161,788,495 RGD:2290270
endosomal vesicle fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ankfy1 ankyrin repeat and FYVE domain containing 1 JBrowse link 11 72,690,002 72,772,146 RGD:2290270
G Samd9l sterile alpha motif domain containing 9-like JBrowse link 6 3,372,257 3,399,571 RGD:2290270
G Tgfbrap1 transforming growth factor, beta receptor associated protein 1 JBrowse link 1 43,047,200 43,098,712 RGD:2290270
G Vps11 VPS11, CORVET/HOPS core subunit JBrowse link 9 44,347,749 44,361,673 RGD:2290270
G Vps39 VPS39 HOPS complex subunit JBrowse link 2 120,316,461 120,353,142 RGD:2290270
G Vps41 VPS41 HOPS complex subunit JBrowse link 13 18,717,292 18,866,811 RGD:2290270
G Vps4a vacuolar protein sorting 4A JBrowse link 8 107,031,269 107,045,760 RGD:2290270
G Vps8 VPS8 CORVET complex subunit JBrowse link 16 21,423,118 21,644,681 RGD:2290270
endosome membrane tubulation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Coro1c coronin, actin binding protein 1C JBrowse link 5 113,842,439 113,908,706 RGD:2290270
G Tmcc1 transmembrane and coiled coil domains 1 JBrowse link 6 116,018,611 116,193,521 RGD:2290270
endosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aktip thymoma viral proto-oncogene 1 interacting protein JBrowse link 8 91,111,781 91,135,494 RGD:2290270
G Als2 alsin Rho guanine nucleotide exchange factor JBrowse link 1 59,162,756 59,237,231 RGD:2290270
G Als2cl ALS2 C-terminal like JBrowse link 9 110,880,120 110,900,530 RGD:2290270
G Anxa8 annexin A8 JBrowse link 14 34,085,979 34,100,571 RGD:2290270
G Arfgef2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) JBrowse link 2 166,805,451 166,898,052 RGD:2290270
G Chmp2b charged multivesicular body protein 2B JBrowse link 16 65,539,128 65,562,762 RGD:2290270
G Dnajc13 DnaJ heat shock protein family (Hsp40) member C13 JBrowse link 9 104,151,597 104,263,608 RGD:2290270
G Dnm1 dynamin 1 JBrowse link 2 32,308,471 32,353,349 RGD:2290270
G Exoc8 exocyst complex component 8 JBrowse link 8 124,890,299 124,897,705 RGD:2290270
G Fam160a2 family with sequence similarity 160, member A2 JBrowse link 7 105,371,211 105,400,142 RGD:2290270
G Hook1 hook microtubule tethering protein 1 JBrowse link 4 95,967,181 96,025,412 RGD:2290270
G Hook2 hook microtubule tethering protein 2 JBrowse link 8 84,988,776 85,003,352 RGD:2290270
G Hook3 hook microtubule tethering protein 3 JBrowse link 8 26,021,421 26,119,618 RGD:2290270
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 JBrowse link 7 101,905,837 101,911,903 RGD:2290270
G Laptm4b lysosomal-associated protein transmembrane 4B JBrowse link 15 34,238,026 34,284,295 RGD:2290270
G Pheta1 PH domain containing endocytic trafficking adaptor 1 JBrowse link 5 121,848,997 121,854,604 RGD:2290270
G Pheta2 PH domain containing endocytic trafficking adaptor 2 JBrowse link 15 82,338,927 82,345,710 RGD:2290270
G Pi4k2a phosphatidylinositol 4-kinase type 2 alpha JBrowse link 19 42,090,148 42,122,218 RGD:2290270
G Pi4k2b phosphatidylinositol 4-kinase type 2 beta JBrowse link 5 52,741,561 52,769,344 RGD:2290270
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 30,265,615 30,348,126 RGD:2290270
G Plekhf1 pleckstrin homology domain containing, family F (with FYVE domain) member 1 JBrowse link 7 38,220,654 38,227,994 RGD:2290270
G Plekhj1 pleckstrin homology domain containing, family J member 1 JBrowse link 10 80,796,099 80,798,626 RGD:2290270
G Rab5a RAB5A, member RAS oncogene family JBrowse link 17 53,479,234 53,507,678 RGD:2290270
G Rab5b RAB5B, member RAS oncogene family JBrowse link 10 128,677,170 128,696,284 RGD:2290270
G Rab5c RAB5C, member RAS oncogene family JBrowse link 11 100,715,003 100,738,215 RGD:2290270
G Rnf26 ring finger protein 26 JBrowse link 9 44,110,781 44,113,051 RGD:2290270
G Snx10 sorting nexin 10 JBrowse link 6 51,523,900 51,590,679 RGD:2290270
G Snx33 sorting nexin 33 JBrowse link 9 56,917,188 56,928,442 RGD:2290270
G Sqstm1 sequestosome 1 JBrowse link 11 50,200,152 50,210,820 RGD:2290270
G Stx6 syntaxin 6 JBrowse link 1 155,158,628 155,207,567 RGD:2290270
G Tmem127 transmembrane protein 127 JBrowse link 2 127,247,904 127,261,108 RGD:2290270
G Usp50 ubiquitin specific peptidase 50 JBrowse link 2 126,761,050 126,783,460 RGD:2290270
G Usp8 ubiquitin specific peptidase 8 JBrowse link 2 126,707,201 126,759,314 RGD:2290270
G Vps11 VPS11, CORVET/HOPS core subunit JBrowse link 9 44,347,749 44,361,673 RGD:2290270
G Vps18 VPS18 CORVET/HOPS core subunit JBrowse link 2 119,288,742 119,298,453 RGD:2290270
G Vps33b vacuolar protein sorting 33B JBrowse link 7 80,269,621 80,291,579 RGD:2290270
G Vps4b vacuolar protein sorting 4B JBrowse link 1 106,770,788 106,796,725 RGD:2290270
G Washc1 WASH complex subunit 1 JBrowse link 17 66,111,529 66,120,503 RGD:2290270
G Washc4 WASH complex subunit 4 JBrowse link 10 83,543,620 83,596,473 RGD:2290270
extracellular exosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd34 CD34 antigen JBrowse link 1 194,938,821 194,961,292 RGD:2290270
eye pigment granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Shroom2 shroom family member 2 JBrowse link X 152,609,509 152,770,788 RGD:2290270
Golgi vesicle budding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Golph3 golgi phosphoprotein 3 JBrowse link 15 12,320,488 12,351,601 RGD:2290270
G Golph3l golgi phosphoprotein 3-like JBrowse link 3 95,588,915 95,619,247 RGD:2290270
G Myo18a myosin XVIIIA JBrowse link 11 77,763,240 77,865,988 RGD:2290270
G Prkci protein kinase C, iota JBrowse link 3 30,995,742 31,052,740 RGD:2290270
Golgi vesicle fusion to target membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nkd2 naked cuticle 2 JBrowse link 13 73,818,534 73,847,631 RGD:2290270
G Rab12 RAB12, member RAS oncogene family JBrowse link 17 66,494,512 66,519,750 RGD:2290270
G Rab13 RAB13, member RAS oncogene family JBrowse link 3 90,213,715 90,226,387 RGD:2290270
G Rab8a RAB8A, member RAS oncogene family JBrowse link 8 72,161,200 72,181,366 RGD:2290270
G Rab8b RAB8B, member RAS oncogene family JBrowse link 9 66,843,609 66,919,705 RGD:2290270
intralumenal vesicle formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rilp Rab interacting lysosomal protein JBrowse link 11 75,510,094 75,513,168 RGD:2290270
G Snx3 sorting nexin 3 JBrowse link 10 42,502,054 42,535,369 RGD:2290270
maintenance of granzyme B location in T cell secretory granule term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Srgn serglycin JBrowse link 10 62,493,833 62,527,445 RGD:2290270
maintenance of protease location in mast cell secretory granule term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Srgn serglycin JBrowse link 10 62,493,833 62,527,445 RGD:2290270
mast cell secretory granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lyst lysosomal trafficking regulator JBrowse link 13 13,590,311 13,778,803 RGD:2290270
G Srgn serglycin JBrowse link 10 62,493,833 62,527,445 RGD:2290270
melanosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 JBrowse link 19 42,755,190 42,780,015 RGD:2290270
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link 5 112,342,983 112,378,424 RGD:2290270
G Rab32 RAB32, member RAS oncogene family JBrowse link 10 10,545,039 10,558,207 RGD:2290270
G Rab38 RAB38, member RAS oncogene family JBrowse link 7 88,430,273 88,491,572 RGD:2290270
G Trappc6a trafficking protein particle complex 6A JBrowse link 7 19,508,665 19,516,145 RGD:2290270
melanosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G a nonagouti JBrowse link 2 154,950,599 155,051,012 RGD:2290270
G Ap1m1 adaptor-related protein complex AP-1, mu subunit 1 JBrowse link 8 72,240,013 72,257,386 RGD:2290270
G Ap3b1 adaptor-related protein complex 3, beta 1 subunit JBrowse link 13 94,358,960 94,566,316 RGD:2290270
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 JBrowse link 7 19,505,783 19,508,380 RGD:2290270
G Bloc1s4 biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino JBrowse link 5 36,747,374 36,748,679 RGD:2290270
G Gpr143 G protein-coupled receptor 143 JBrowse link X 152,781,921 152,808,651 RGD:2290270
G Kif13a kinesin family member 13A JBrowse link 13 46,749,087 46,929,917 RGD:2290270
G Lyst lysosomal trafficking regulator JBrowse link 13 13,590,311 13,778,803 RGD:2290270
G Pmel premelanosome protein JBrowse link 10 128,695,888 128,720,238 RGD:2290270
G Shroom2 shroom family member 2 JBrowse link X 152,609,509 152,770,788 RGD:2290270
G Tyrp1 tyrosinase-related protein 1 JBrowse link 4 80,834,123 80,851,736 RGD:2290270
multivesicular body assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rab11a RAB11A, member RAS oncogene family JBrowse link 9 64,715,300 64,737,756 RGD:2290270
G Vps4a vacuolar protein sorting 4A JBrowse link 8 107,031,269 107,045,760 RGD:2290270
G Vps4b vacuolar protein sorting 4B JBrowse link 1 106,770,788 106,796,725 RGD:2290270
multivesicular body organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rab27a RAB27A, member RAS oncogene family JBrowse link 9 73,044,810 73,097,623 RGD:2290270
negative regulation of cargo loading into COPII-coated vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Insig1 insulin induced gene 1 JBrowse link 5 28,071,412 28,078,662 RGD:2290270
G Sar1a secretion associated Ras related GTPase 1A JBrowse link 10 61,680,285 61,693,297 RGD:2290270
negative regulation of intralumenal vesicle formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 17 10,840,359 12,063,370 RGD:2290270
negative regulation of SNARE complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ankrd27 ankyrin repeat domain 27 (VPS9 domain) JBrowse link 7 35,586,226 35,639,237 RGD:2290270
G Prrt2 proline-rich transmembrane protein 2 JBrowse link 7 127,017,542 127,021,450 RGD:2290270
G Trim9 tripartite motif-containing 9 JBrowse link 12 70,244,533 70,347,869 RGD:2290270
negative regulation of vesicle fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Coro1a coronin, actin binding protein 1A JBrowse link 7 126,699,774 126,704,816 RGD:2290270
G Syt4 synaptotagmin IV JBrowse link 18 31,437,808 31,447,415 RGD:2290270
G Tbc1d4 TBC1 domain family, member 4 JBrowse link 14 101,442,360 101,609,281 RGD:2290270
phagolysosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Coro1a coronin, actin binding protein 1A JBrowse link 7 126,699,774 126,704,816 RGD:2290270
G Myo7a myosin VIIA JBrowse link 7 98,051,054 98,119,522 RGD:2290270
G P2rx7 purinergic receptor P2X, ligand-gated ion channel, 7 JBrowse link 5 122,643,927 122,692,336 RGD:2290270
G Srpx sushi-repeat-containing protein JBrowse link X 10,037,977 10,117,640 RGD:2290270
phagolysosome assembly involved in apoptotic cell clearance term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rab14 RAB14, member RAS oncogene family JBrowse link 2 35,180,205 35,201,120 RGD:2290270
phagosome-lysosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rab20 RAB20, member RAS oncogene family JBrowse link 8 11,453,390 11,478,640 RGD:2290270
G Rab34 RAB34, member RAS oncogene family JBrowse link 11 78,188,427 78,192,193 RGD:2290270
G Rab39 RAB39, member RAS oncogene family JBrowse link 9 53,684,110 53,706,232 RGD:2290270
G Rab7 RAB7, member RAS oncogene family JBrowse link 6 87,999,106 88,045,270 RGD:2290270
G Rab7b RAB7B, member RAS oncogene family JBrowse link 1 131,688,681 131,715,443 RGD:2290270
G Syt7 synaptotagmin VII JBrowse link 19 10,388,802 10,453,181 RGD:2290270
G Tmem175 transmembrane protein 175 JBrowse link 5 108,629,779 108,647,770 RGD:2290270
phagosome-lysosome fusion involved in apoptotic cell clearance term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Spg11 SPG11, spatacsin vesicle trafficking associated JBrowse link 2 122,053,526 122,119,434 RGD:2290270
pigment granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2 B cell leukemia/lymphoma 2 JBrowse link 1 106,538,176 106,714,290 RGD:2290270
G Lyst lysosomal trafficking regulator JBrowse link 13 13,590,311 13,778,803 RGD:2290270
platelet alpha granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nbeal2 neurobeachin-like 2 JBrowse link 9 110,624,789 110,654,161 RGD:2290270
G Vps33b vacuolar protein sorting 33B JBrowse link 7 80,269,621 80,291,579 RGD:2290270
G Zfp385a zinc finger protein 385A JBrowse link 15 103,313,895 103,340,086 RGD:2290270
platelet dense granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca1 ATP-binding cassette, sub-family A (ABC1), member 1 JBrowse link 4 53,030,789 53,159,988 RGD:2290270
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 JBrowse link 7 19,505,783 19,508,380 RGD:2290270
G Dtnbp1 dystrobrevin binding protein 1 JBrowse link 13 44,922,079 45,002,096 RGD:2290270
G Rab38 RAB38, member RAS oncogene family JBrowse link 7 88,430,273 88,491,572 RGD:2290270
positive regulation of endosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Synj1 synaptojanin 1 JBrowse link 16 90,936,092 91,013,727 RGD:2290270
positive regulation of extracellular exosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pdcd6ip programmed cell death 6 interacting protein JBrowse link 9 113,651,744 113,708,279 RGD:2290270
G Sdc1 syndecan 1 JBrowse link 12 8,771,396 8,793,716 RGD:2290270
G Sdc4 syndecan 4 JBrowse link 2 164,424,247 164,443,188 RGD:2290270
G Sdcbp syndecan binding protein JBrowse link 4 6,365,680 6,396,122 RGD:2290270
positive regulation of secretory granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link 10 79,854,432 79,864,435 RGD:2290270
positive regulation of SNARE complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cltrn collectrin, amino acid transport regulator JBrowse link X 164,090,187 164,118,859 RGD:2290270
positive regulation of vesicle fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akt2 thymoma viral proto-oncogene 2 JBrowse link 7 27,591,552 27,640,826 RGD:2290270
G Anxa1 annexin A1 JBrowse link 19 20,373,434 20,390,671 RGD:2290270
G Anxa2 annexin A2 JBrowse link 9 69,453,683 69,491,792 RGD:2290270
G Anxa9 annexin A9 JBrowse link 3 95,296,093 95,315,157 RGD:2290270
G C2cd5 C2 calcium-dependent domain containing 5 JBrowse link 6 143,010,920 143,100,155 RGD:2290270
G Doc2b double C2, beta JBrowse link 11 75,768,270 75,796,060 RGD:2290270
G Kif5b kinesin family member 5B JBrowse link 18 6,201,005 6,241,524 RGD:2290270
G Pla2g4a phospholipase A2, group IVA (cytosolic, calcium-dependent) JBrowse link 1 149,829,618 149,961,290 RGD:2290270
G Syt1 synaptotagmin I JBrowse link 10 108,497,650 109,010,980 RGD:2290270
G Syt3 synaptotagmin III JBrowse link 7 44,382,773 44,400,030 RGD:2290270
proacrosomal vesicle fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AU040320 expressed sequence AU040320 JBrowse link 4 126,753,547 126,869,694 RGD:2290270
regulation of cargo loading into COPII-coated vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sar1a secretion associated Ras related GTPase 1A JBrowse link 10 61,680,285 61,693,297 RGD:2290270
G Sec24b Sec24 related gene family, member B (S. cerevisiae) JBrowse link 3 129,982,759 130,061,599 RGD:2290270
regulation of COPII vesicle coating term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mapk15 mitogen-activated protein kinase 15 JBrowse link 15 75,993,732 75,999,153 RGD:2290270
G Preb prolactin regulatory element binding JBrowse link 5 30,951,667 30,960,356 RGD:2290270
G Sar1a secretion associated Ras related GTPase 1A JBrowse link 10 61,680,285 61,693,297 RGD:2290270
G Sar1b secretion associated Ras related GTPase 1B JBrowse link 11 51,763,663 51,791,953 RGD:2290270
regulation of endosomal vesicle fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sphk1 sphingosine kinase 1 JBrowse link 11 116,530,836 116,536,675 RGD:2290270
regulation of extracellular exosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pdcd6ip programmed cell death 6 interacting protein JBrowse link 9 113,651,744 113,708,279 RGD:2290270
G Stam signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 JBrowse link 2 14,073,962 14,148,338 RGD:2290270
G Tsg101 tumor susceptibility gene 101 JBrowse link 7 46,888,949 46,926,320 RGD:2290270
regulation of melanosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gpr143 G protein-coupled receptor 143 JBrowse link X 152,781,921 152,808,651 RGD:2290270
G Zeb2 zinc finger E-box binding homeobox 2 JBrowse link 2 44,983,512 45,117,442 RGD:2290270
regulation of SNARE complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Septin8 septin 8 JBrowse link 11 53,519,397 53,549,605 RGD:2290270
G Stxbp6 syntaxin binding protein 6 (amisyn) JBrowse link 12 44,852,484 45,075,118 RGD:2290270
G Vps11 VPS11, CORVET/HOPS core subunit JBrowse link 9 44,347,749 44,361,673 RGD:2290270
G Vps16 VSP16 CORVET/HOPS core subunit JBrowse link 2 130,424,320 130,444,269 RGD:2290270
G Vps18 VPS18 CORVET/HOPS core subunit JBrowse link 2 119,288,742 119,298,453 RGD:2290270
G Vps41 VPS41 HOPS complex subunit JBrowse link 13 18,717,292 18,866,811 RGD:2290270
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slc2a4 solute carrier family 2 (facilitated glucose transporter), member 4 JBrowse link 11 69,942,286 69,948,216 RGD:2290270
regulation of synaptic vesicle fusion to presynaptic active zone membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cplx1 complexin 1 JBrowse link 5 108,518,554 108,550,027 RGD:2290270
G Cplx2 complexin 2 JBrowse link 13 54,301,964 54,383,923 RGD:2290270
G Cplx3 complexin 3 JBrowse link 9 57,599,992 57,606,281 RGD:2290270
G Grik5 glutamate receptor, ionotropic, kainate 5 (gamma 2) JBrowse link 7 25,009,849 25,075,694 RGD:2290270
G Rab3a RAB3A, member RAS oncogene family JBrowse link 8 70,754,679 70,758,686 RGD:2290270
G Vamp1 vesicle-associated membrane protein 1 JBrowse link 6 125,215,581 125,222,306 RGD:2290270
regulation of vesicle fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slamf1 signaling lymphocytic activation molecule family member 1 JBrowse link 1 171,767,131 171,801,184 RGD:2290270
G Stxbp1 syntaxin binding protein 1 JBrowse link 2 32,787,607 32,847,237 RGD:2290270
G Syt4 synaptotagmin IV JBrowse link 18 31,437,808 31,447,415 RGD:2290270
secretory granule maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Syt4 synaptotagmin IV JBrowse link 18 31,437,808 31,447,415 RGD:2290270
secretory granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aqp1 aquaporin 1 JBrowse link 6 55,336,299 55,348,555 RGD:2290270
G Creb1 cAMP responsive element binding protein 1 JBrowse link 1 64,532,794 64,604,548 RGD:2290270
G Mta1 metastasis associated 1 JBrowse link 12 113,098,248 113,137,206 RGD:2290270
G Serpine2 serine (or cysteine) peptidase inhibitor, clade E, member 2 JBrowse link 1 79,794,317 79,858,665 RGD:2290270
SNARE complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Snap25 synaptosomal-associated protein 25 JBrowse link 2 136,713,439 136,782,428 RGD:2290270
G Snca synuclein, alpha JBrowse link 6 60,731,573 60,829,855 RGD:2290270
G Stx1a syntaxin 1A (brain) JBrowse link 5 135,023,482 135,051,100 RGD:2290270
G Stx4a syntaxin 4A (placental) JBrowse link 7 127,840,643 127,850,988 RGD:2290270
G Stxbp1 syntaxin binding protein 1 JBrowse link 2 32,787,607 32,847,237 RGD:2290270
G Uvrag UV radiation resistance associated gene JBrowse link 7 98,886,742 99,141,167 RGD:2290270
G Vamp1 vesicle-associated membrane protein 1 JBrowse link 6 125,215,581 125,222,306 RGD:2290270
G Vamp2 vesicle-associated membrane protein 2 JBrowse link 11 69,088,528 69,092,381 RGD:2290270
G Vamp3 vesicle-associated membrane protein 3 JBrowse link 4 151,047,305 151,057,953 RGD:2290270
G Vamp4 vesicle-associated membrane protein 4 JBrowse link 1 162,570,515 162,599,082 RGD:2290270
G Vamp7 vesicle-associated membrane protein 7 RGD:2290270
G Vamp8 vesicle-associated membrane protein 8 JBrowse link 6 72,385,221 72,390,667 RGD:2290270
synaptic vesicle budding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arf1 ADP-ribosylation factor 1 JBrowse link 11 59,211,412 59,228,267 RGD:2290270
synaptic vesicle budding from endosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap1s2 adaptor-related protein complex 1, sigma 2 subunit JBrowse link X 163,908,454 163,933,666 RGD:2290270
G Ap3b1 adaptor-related protein complex 3, beta 1 subunit JBrowse link 13 94,358,960 94,566,316 RGD:2290270
G Ap3d1 adaptor-related protein complex 3, delta 1 subunit JBrowse link 10 80,706,956 80,742,303 RGD:2290270
G Btbd8 BTB (POZ) domain containing 8 JBrowse link 5
5
107,437,997
107,497,745
107,491,596
107,512,556
RGD:2290270
synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dnm1 dynamin 1 JBrowse link 2 32,308,471 32,353,349 RGD:2290270
G Dnm2 dynamin 2 JBrowse link 9 21,424,908 21,507,759 RGD:2290270
G Dnm3 dynamin 3 JBrowse link 1 161,982,450 162,478,321 RGD:2290270
G Mx1 MX dynamin-like GTPase 1 JBrowse link 16 97,447,035 97,462,906 RGD:2290270
G Mx2 MX dynamin-like GTPase 2 JBrowse link 16 97,536,081 97,560,901 RGD:2290270
G Picalm phosphatidylinositol binding clathrin assembly protein JBrowse link 7 90,130,192 90,209,447 RGD:2290270
G Snap91 synaptosomal-associated protein 91 JBrowse link 9 86,765,923 86,880,734 RGD:2290270
synaptic vesicle fusion to presynaptic active zone membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gm379 predicted gene 379 JBrowse link X 108,664,076 108,664,891 RGD:2290270
G Prrt2 proline-rich transmembrane protein 2 JBrowse link 7 127,017,542 127,021,450 RGD:2290270
G Snap23 synaptosomal-associated protein 23 JBrowse link 2 120,567,655 120,601,255 RGD:2290270
G Snap25 synaptosomal-associated protein 25 JBrowse link 2 136,713,439 136,782,428 RGD:2290270
G Snap29 synaptosomal-associated protein 29 JBrowse link 16 17,406,000 17,430,826 RGD:2290270
G Snap47 synaptosomal-associated protein, 47 JBrowse link 11 59,407,141 59,450,041 RGD:2290270
G Snapin SNAP-associated protein JBrowse link 3 90,488,026 90,491,013 RGD:2290270
G Stx11 syntaxin 11 JBrowse link 10 12,938,217 12,964,498 RGD:2290270
G Stx19 syntaxin 19 JBrowse link 16 62,814,676 62,822,722 RGD:2290270
G Stx1a syntaxin 1A (brain) JBrowse link 5 135,023,482 135,051,100 RGD:2290270
G Stx1b syntaxin 1B JBrowse link 7 127,803,900 127,824,531 RGD:2290270
G Stx2 syntaxin 2 JBrowse link 5 128,984,557 129,008,600 RGD:2290270
G Stx3 syntaxin 3 JBrowse link 19 11,775,118 11,821,569 RGD:2290270
G Stx4a syntaxin 4A (placental) JBrowse link 7 127,840,643 127,850,988 RGD:2290270
G Stxbp1 syntaxin binding protein 1 JBrowse link 2 32,787,607 32,847,237 RGD:2290270
synaptic vesicle lumen acidification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clcn3 chloride channel, voltage-sensitive 3 JBrowse link 8 60,910,389 60,983,317 RGD:2290270
G Slc17a7 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 JBrowse link 7 45,163,921 45,176,139 RGD:2290270
synaptic vesicle maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dlg4 discs large MAGUK scaffold protein 4 JBrowse link 11 70,017,203 70,045,535 RGD:2290270
G Picalm phosphatidylinositol binding clathrin assembly protein JBrowse link 7 90,130,192 90,209,447 RGD:2290270
G Rab3a RAB3A, member RAS oncogene family JBrowse link 8 70,754,679 70,758,686 RGD:2290270
G Snapin SNAP-associated protein JBrowse link 3 90,488,026 90,491,013 RGD:2290270
G Stxbp1 syntaxin binding protein 1 JBrowse link 2 32,787,607 32,847,237 RGD:2290270
G Unc13a unc-13 homolog A JBrowse link 8 71,624,125 71,671,774 RGD:2290270
G Unc13b unc-13 homolog B JBrowse link 4 43,046,193 43,264,873 RGD:2290270
G Unc13c unc-13 homolog C JBrowse link 9 73,479,422 74,008,155 RGD:2290270
G Zdhhc15 zinc finger, DHHC domain containing 15 JBrowse link X 104,536,969 104,671,090 RGD:2290270
T cell secretory granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Srgn serglycin JBrowse link 10 62,493,833 62,527,445 RGD:2290270
vesicle budding from membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anxa2 annexin A2 JBrowse link 9 69,453,683 69,491,792 RGD:2290270
G Anxa9 annexin A9 JBrowse link 3 95,296,093 95,315,157 RGD:2290270
G Ap2m1 adaptor-related protein complex 2, mu 1 subunit JBrowse link 16 20,535,480 20,544,909 RGD:2290270
G P2rx7 purinergic receptor P2X, ligand-gated ion channel, 7 JBrowse link 5 122,643,927 122,692,336 RGD:2290270
G Picalm phosphatidylinositol binding clathrin assembly protein JBrowse link 7 90,130,192 90,209,447 RGD:2290270
G S100a10 S100 calcium binding protein A10 (calpactin) JBrowse link 3 93,554,940 93,564,645 RGD:2290270
G Snap91 synaptosomal-associated protein 91 JBrowse link 9 86,765,923 86,880,734 RGD:2290270
G Trim72 tripartite motif-containing 72 JBrowse link 7 128,003,462 128,011,393 RGD:2290270
G Vps4a vacuolar protein sorting 4A JBrowse link 8 107,031,269 107,045,760 RGD:2290270
G Wasl WASP like actin nucleation promoting factor JBrowse link 6 24,613,810 24,664,995 RGD:2290270
vesicle fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bloc1s6 biogenesis of lysosomal organelles complex-1, subunit 6, pallidin JBrowse link 2 122,738,505 122,749,487 RGD:2290270
G C2cd5 C2 calcium-dependent domain containing 5 JBrowse link 6 143,010,920 143,100,155 RGD:2290270
G Cav2 caveolin 2 JBrowse link 6 17,281,185 17,289,130 RGD:2290270
G Dysf dysferlin JBrowse link 6 84,008,361 84,211,060 RGD:2290270
G Eea1 early endosome antigen 1 JBrowse link 10 95,940,663 96,045,518 RGD:2290270
G Gm379 predicted gene 379 JBrowse link X 108,664,076 108,664,891 RGD:2290270
G Gnai3 guanine nucleotide binding protein (G protein), alpha inhibiting 3 JBrowse link 3 108,107,275 108,146,152 RGD:2290270
G Gosr1 golgi SNAP receptor complex member 1 JBrowse link 11 76,726,602 76,763,578 RGD:2290270
G Snap23 synaptosomal-associated protein 23 JBrowse link 2 120,567,655 120,601,255 RGD:2290270
G Snap25 synaptosomal-associated protein 25 JBrowse link 2 136,713,439 136,782,428 RGD:2290270
G Snap29 synaptosomal-associated protein 29 JBrowse link 16 17,406,000 17,430,826 RGD:2290270
G Snap47 synaptosomal-associated protein, 47 JBrowse link 11 59,407,141 59,450,041 RGD:2290270
G Snph syntaphilin JBrowse link 2 151,590,549 151,632,607 RGD:2290270
G Stx11 syntaxin 11 JBrowse link 10 12,938,217 12,964,498 RGD:2290270
G Stx12 syntaxin 12 JBrowse link 4 132,854,064 132,884,458 RGD:2290270
G Stx16 syntaxin 16 JBrowse link 2 174,076,260 174,099,771 RGD:2290270
G Stx17 syntaxin 17 JBrowse link 4 48,124,906 48,186,507 RGD:2290270
G Stx19 syntaxin 19 JBrowse link 16 62,814,676 62,822,722 RGD:2290270
G Stx1a syntaxin 1A (brain) JBrowse link 5 135,023,482 135,051,100 RGD:2290270
G Stx1b syntaxin 1B JBrowse link 7 127,803,900 127,824,531 RGD:2290270
G Stx2 syntaxin 2 JBrowse link 5 128,984,557 129,008,600 RGD:2290270
G Stx3 syntaxin 3 JBrowse link 19 11,775,118 11,821,569 RGD:2290270
G Stx4a syntaxin 4A (placental) JBrowse link 7 127,840,643 127,850,988 RGD:2290270
G Stx5a syntaxin 5A JBrowse link 19 8,741,424 8,755,642 RGD:2290270
G Stx6 syntaxin 6 JBrowse link 1 155,158,628 155,207,567 RGD:2290270
G Stx7 syntaxin 7 JBrowse link 10 24,149,289 24,188,961 RGD:2290270
G Stx8 syntaxin 8 JBrowse link 11 67,966,411 68,207,148 RGD:2290270
G Vamp7 vesicle-associated membrane protein 7 RGD:2290270
G Vamp8 vesicle-associated membrane protein 8 JBrowse link 6 72,385,221 72,390,667 RGD:2290270
G Vamp9 vesicle-associated membrane protein 9 JBrowse link 5 99,906,242 99,951,649 RGD:2290270
G Vav3 vav 3 oncogene JBrowse link 3 109,340,317 109,685,694 RGD:2290270
vesicle fusion to plasma membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trarg1 trafficking regulator of GLUT4 (SLC2A4) 1 JBrowse link 11 76,679,873 76,698,664 RGD:2290270
vesicle fusion with Golgi apparatus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bet1 Bet1 golgi vesicular membrane trafficking protein JBrowse link 6 4,076,899 4,086,998 RGD:2290270
G Gosr2 golgi SNAP receptor complex member 2 JBrowse link 11 103,676,849 103,697,723 RGD:2290270
G Sec22b SEC22 homolog B, vesicle trafficking protein JBrowse link 3 97,901,227 97,922,318 RGD:2290270
G Stx5a syntaxin 5A JBrowse link 19 8,741,424 8,755,642 RGD:2290270
G Uso1 USO1 vesicle docking factor JBrowse link 5 92,137,909 92,202,800 RGD:2290270
G Vamp7 vesicle-associated membrane protein 7 RGD:2290270
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link 19 55,316,030 55,627,461 RGD:2290270
G Vti1b vesicle transport through interaction with t-SNAREs 1B JBrowse link 12 79,156,017 79,172,685 RGD:2290270
vesicle fusion with vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Syt4 synaptotagmin IV JBrowse link 18 31,437,808 31,447,415 RGD:2290270

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23017
    cellular component organization or biogenesis 6221
      cellular component organization 6039
        organelle organization 3582
          vesicle organization 264
            Cvt vesicle assembly 0
            ciliary vesicle assembly 0
            contractile vacuole organization 0
            endosome organization + 50
            extracellular exosome assembly + 7
            gut granule assembly + 0
            phagolysosome assembly + 13
            pigment granule organization + 18
            secretory granule organization + 36
            synaptic vesicle maturation + 11
            vesicle budding from membrane + 59
            vesicle coating + 15
            vesicle fusion + 98
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.