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ONTOLOGY REPORT - ANNOTATIONS


Term:myotube cell development
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Accession:GO:0014904 term browser browse the term
Definition:The process aimed at the progression of a myotube cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.


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myotube cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DMD dystrophin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3849772|PMID:19535499) MGI
Ensembl
PMID:19535499 GO_REF:0000107 MGI:3849772 NCBI chr  X:27,028,223...29,650,728
Ensembl chr  X:27,028,223...29,181,689
JBrowse link
G IGF1 insulin like growth factor 1 involved_in ISO (PMID:17531227) BHF-UCL PMID:17531227 NCBI chr 5:81,762,027...81,909,253
Ensembl chr 5:81,775,970...81,848,037
JBrowse link
G MYOD1 myogenic differentiation 1 involved_in ISO (PMID:10672515) BHF-UCL PMID:10672515 NCBI chr 2:41,422,522...41,424,236
Ensembl chr 2:41,415,735...41,425,234
JBrowse link
G NFATC2 nuclear factor of activated T cells 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3821556|PMID:18676376) Ensembl
MGI
PMID:18676376 GO_REF:0000107 MGI:3821556 NCBI chr17:52,743,570...52,907,373
Ensembl chr17:52,743,570...52,906,821
JBrowse link
G NFATC3 nuclear factor of activated T cells 3 acts_upstream_of_or_within ISO (MGI:3821556|PMID:18676376) MGI PMID:18676376 MGI:3821556 NCBI chr 6:28,666,458...28,806,432
Ensembl chr 6:28,617,445...28,872,058
JBrowse link
G SMYD3 SET and MYND domain containing 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5500979|PMID:23752591) Ensembl
MGI
PMID:23752591 GO_REF:0000107 MGI:5500979 NCBI chr10:18,267,598...19,019,520
Ensembl chr10:18,267,603...19,019,537
JBrowse link
neuromuscular junction development, skeletal muscle fiber term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PMP22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (MGI:5605930|PMID:25014022) MGI PMID:25014022 MGI:5605930 NCBI chr12:58,679,773...58,734,195
Ensembl chr12:58,679,776...58,707,953
JBrowse link
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN3 actinin alpha 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:5,860,386...5,873,779
Ensembl chr 2:5,858,845...5,874,124
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within ISO (MGI:1928555|PMID:11146504) MGI PMID:11146504 MGI:1928555 NCBI chr 1:158,337,403...158,518,214
Ensembl chr 1:158,288,544...158,518,879
JBrowse link
G LMOD3 leiomodin 3 involved_in ISO (PMID:25250574) UniProt PMID:25250574 NCBI chr13:50,541,407...50,554,346 JBrowse link
G MYF5 myogenic factor 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:100,753,440...100,755,558
Ensembl chr 5:100,752,890...100,755,494
JBrowse link
G MYF6 myogenic factor 6 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:100,762,918...100,764,771
Ensembl chr 5:100,762,910...100,765,704
JBrowse link
G MYOD1 myogenic differentiation 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:41,422,522...41,424,236
Ensembl chr 2:41,415,735...41,425,234
JBrowse link
G MYOG myogenin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:113,783,233...113,785,312
Ensembl chr 9:113,782,469...113,785,362
JBrowse link
G SHOX2 short stature homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:97,879,586...97,892,276
Ensembl chr13:97,879,281...97,890,447
JBrowse link
regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXO22 F-box protein 22 acts_upstream_of_or_within ISO (MGI:3840749|PMID:19319192) MGI PMID:19319192 MGI:3840749 NCBI chr 7:56,146,874...56,189,921
Ensembl chr 7:56,084,023...56,186,352
JBrowse link
G HDAC4 histone deacetylase 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3763703|PMID:17786239) Ensembl
MGI
PMID:17786239 GO_REF:0000107 MGI:3763703 NCBI chr15:138,378,237...138,657,266
Ensembl chr15:138,381,627...138,614,301
JBrowse link
G HDAC5 histone deacetylase 5 acts_upstream_of_or_within ISO (MGI:3763703|PMID:17786239) MGI PMID:17786239 MGI:3763703 NCBI chr12:19,077,910...19,119,463
Ensembl chr12:19,077,997...19,123,140
JBrowse link
G HDAC9 histone deacetylase 9 acts_upstream_of_or_within ISO (MGI:3763703|PMID:17786239) MGI PMID:17786239 MGI:3763703 NCBI chr 9:87,164,400...88,192,803
Ensembl chr 9:87,449,359...88,186,965
JBrowse link
G NACA nascent polypeptide associated complex subunit alpha involved_in ISO (MGI:4867362|PMID:21071677) BHF-UCL PMID:21071677 MGI:4867362 NCBI chr 5:22,044,569...22,058,096 JBrowse link
skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTA1 actin alpha 1, skeletal muscle involved_in ISS UniProt GO_REF:0000024 NCBI chr14:60,412,651...60,415,687 JBrowse link
G BBS5 Bardet-Biedl syndrome 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr15:75,850,860...75,874,950
Ensembl chr15:75,852,198...75,895,016
JBrowse link
G BIN3 bridging integrator 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5517720|PMID:23872330) Ensembl
MGI
PMID:23872330 GO_REF:0000107 MGI:5517720 NCBI chr14:6,874,281...6,926,950
Ensembl chr14:6,874,281...6,923,361
JBrowse link
G CACNA1S calcium voltage-gated channel subunit alpha1 S acts_upstream_of_or_within ISO (MGI:66718|PMID:8143864)
(MGI:3630139|PMID:289331), (MGI:53207|PMID:8462749)
MGI PMID:289331 PMID:8143864 PMID:8462749 MGI:3630139 MGI:53207 MGI:66718 NCBI chr10:23,503,701...23,567,797
Ensembl chr10:23,502,898...23,568,032
JBrowse link
G CAV2 caveolin 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3695802|PMID:17200204) UniProt
MGI
PMID:17200204 GO_REF:0000024 MGI:3695802 NCBI chr18:29,699,012...29,707,277
Ensembl chr18:29,699,020...29,707,277
JBrowse link
G DNER delta/notch like EGF repeat containing involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3583881|PMID:15965470) Ensembl
MGI
PMID:15965470 GO_REF:0000107 MGI:3583881 NCBI chr15:130,414,159...130,754,043
Ensembl chr15:130,414,161...130,754,051
JBrowse link
G GPX1 glutathione peroxidase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3662804|PMID:16962942) Ensembl
MGI
PMID:16962942 GO_REF:0000107 MGI:3662804 NCBI chr13:31,916,269...31,917,337
Ensembl chr13:31,914,932...31,917,335
JBrowse link
G HOMER1 homer scaffold protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3784629|PMID:18268005) Ensembl
MGI
PMID:18268005 GO_REF:0000107 MGI:3784629 NCBI chr 2:88,116,664...88,253,843
Ensembl chr 2:88,122,877...88,255,281
JBrowse link
G KEL Kell metallo-endopeptidase (Kell blood group) acts_upstream_of_or_within ISO (MGI:5550316|PMID:24405768) MGI PMID:24405768 MGI:5550316 NCBI chr18:7,242,378...7,279,345
Ensembl chr18:7,043,646...7,318,395
JBrowse link
G KLHL40 kelch like family member 40 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:5586592|PMID:24960163)
GO_Central
MGI
PMID:21873635 PMID:24960163 MGI:5586592 NCBI chr13:26,202,607...26,211,528
Ensembl chr13:26,202,677...26,211,523
JBrowse link
G KLHL41 kelch like family member 41 involved_in IEA InterPro GO_REF:0000002 NCBI chr15:75,875,694...75,893,789
Ensembl chr15:75,852,198...75,895,016
JBrowse link
G LMOD3 leiomodin 3 involved_in ISO (MGI:5644091|PMID:25774500), (MGI:5648755|PMID:26035871) UniProt PMID:25774500 PMID:26035871 MGI:5644091 MGI:5648755 NCBI chr13:50,541,407...50,554,346 JBrowse link
G MYOD1 myogenic differentiation 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3840749|PMID:19319192) Ensembl
MGI
PMID:19319192 GO_REF:0000107 MGI:3840749 NCBI chr 2:41,422,522...41,424,236
Ensembl chr 2:41,415,735...41,425,234
JBrowse link
G MYOG myogenin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:62381|PMID:8393145) Ensembl
MGI
PMID:8393145 GO_REF:0000107 MGI:62381 NCBI chr 9:113,783,233...113,785,312
Ensembl chr 9:113,782,469...113,785,362
JBrowse link
G MYORG myogenesis regulating glycosidase (putative) involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:4422154|PMID:19706595)
GO_Central
MGI
PMID:19706595 PMID:21873635 MGI:4422154 NCBI chr10:32,436,349...32,443,971
Ensembl chr10:32,348,701...32,443,968
JBrowse link
G NFATC3 nuclear factor of activated T cells 3 acts_upstream_of_or_within ISO (MGI:1933051|PMID:11254352) MGI PMID:11254352 MGI:1933051 NCBI chr 6:28,666,458...28,806,432
Ensembl chr 6:28,617,445...28,872,058
JBrowse link
G P2RX2 purinergic receptor P2X 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3766888|PMID:17706883) Ensembl
MGI
PMID:17706883 GO_REF:0000107 MGI:3766888 NCBI chr14:22,854,828...22,858,574
Ensembl chr14:22,854,828...22,858,386
JBrowse link
G PLEC plectin involved_in ISO
IEA
(MGI:3797705|PMID:18490514)
(MGI:5567855|PMID:24487589)
MGI
Ensembl
PMID:18490514 PMID:24487589 GO_REF:0000107 MGI:3797705 MGI:5567855 NCBI chr 4:696,355...753,859
Ensembl chr 4:685,456...753,859
JBrowse link
G PPP3CA protein phosphatase 3 catalytic subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3586394|PMID:16024798) Ensembl
MGI
PMID:16024798 GO_REF:0000107 MGI:3586394 NCBI chr 8:119,429,181...119,754,615
Ensembl chr 8:119,428,743...119,754,650
JBrowse link
G RCAN1 regulator of calcineurin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3586394|PMID:16024798) Ensembl
MGI
PMID:16024798 GO_REF:0000107 MGI:3586394 NCBI chr13:198,106,256...198,205,727
Ensembl chr13:198,102,098...198,205,629
JBrowse link
G RIPOR2 RHO family interacting cell polarization regulator 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:19,609,358...19,842,345
Ensembl chr 7:19,587,685...19,838,093
JBrowse link
G RYR1 ryanodine receptor 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 6:47,339,759...47,458,457 JBrowse link
G SELENON selenoprotein N involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
(MGI:5494499|PMID:23325319)
(PMID:21873635)
Ensembl
MGI
GO_Central
PMID:21873635 PMID:23325319 GO_REF:0000107 MGI:5494499 NCBI chr 6:83,246,934...83,262,748
Ensembl chr 6:83,246,934...83,262,746
JBrowse link
G SIX1 SIX homeobox 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:189,620,430...189,624,652
Ensembl chr 1:189,619,853...189,628,187
JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (MGI:1095997|PMID:9284043) MGI PMID:9284043 MGI:1095997 NCBI chr 6:64,188,265...64,242,596
Ensembl chr 6:64,188,029...64,241,556
JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5438143|PMID:22987639) Ensembl
MGI
PMID:22987639 GO_REF:0000107 MGI:5438143 NCBI chr18:19,450,730...19,478,796
Ensembl chr18:19,450,734...19,479,374
JBrowse link
G STAC3 SH3 and cysteine rich domain 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5508972|PMID:23626854) Ensembl
MGI
PMID:23626854 GO_REF:0000107 MGI:5508972 NCBI chr 5:22,549,008...22,556,330
Ensembl chr 5:22,549,008...22,556,194
JBrowse link
G WNT10B Wnt family member 10B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3581945|PMID:15673614) Ensembl
MGI
PMID:15673614 GO_REF:0000107 MGI:3581945 NCBI chr 5:14,997,377...15,013,928
Ensembl chr 5:14,997,381...15,013,919
JBrowse link
G XK X-linked Kx blood group acts_upstream_of_or_within ISO (MGI:5550316|PMID:24405768) MGI PMID:24405768 MGI:5550316 NCBI chr  X:33,544,287...33,602,576
Ensembl chr  X:33,544,730...33,602,574
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16567
    developmental process 6314
      anatomical structure development 5831
        cell development 2346
          muscle cell development 213
            myotube cell development 44
              myotube cell development involved in skeletal muscle regeneration 0
              skeletal muscle fiber development + 40
Path 2
Term Annotations click to browse term
  biological_process 16567
    developmental process 6314
      cellular developmental process 4177
        cell differentiation 4089
          muscle cell differentiation 417
            striated muscle cell differentiation 315
              myotube differentiation 129
                myotube cell development 44
                  myotube cell development involved in skeletal muscle regeneration 0
                  skeletal muscle fiber development + 40
paths to the root