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ONTOLOGY REPORT - ANNOTATIONS


Term:myotube cell development
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Accession:GO:0014904 term browser browse the term
Definition:The process aimed at the progression of a myotube cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.


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myotube cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DMD dystrophin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3849772|PMID:19535499) Ensembl
MGI
PMID:19535499 GO_REF:0000107 MGI:3849772 NCBI chr  X:31,119,219...33,339,460
Ensembl chr  X:31,097,677...33,339,609
JBrowse link
G IGF1 insulin like growth factor 1 involved_in IDA (PMID:17531227) BHF-UCL PMID:17531227 NCBI chr12:102,395,860...102,481,839
Ensembl chr12:102,395,874...102,481,744
JBrowse link
G MYOD1 myogenic differentiation 1 involved_in IDA (PMID:10672515) BHF-UCL PMID:10672515 NCBI chr11:17,719,571...17,722,136
Ensembl chr11:17,719,571...17,722,136
JBrowse link
G NFATC2 nuclear factor of activated T cells 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3821556|PMID:18676376) Ensembl
MGI
PMID:18676376 GO_REF:0000107 MGI:3821556 NCBI chr20:51,386,963...51,562,857
Ensembl chr20:51,386,957...51,562,831
JBrowse link
G NFATC3 nuclear factor of activated T cells 3 acts_upstream_of_or_within ISO (MGI:3821556|PMID:18676376) MGI PMID:18676376 MGI:3821556 NCBI chr16:68,085,370...68,229,259
Ensembl chr16:68,084,751...68,229,259
JBrowse link
G SMYD3 SET and MYND domain containing 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5500979|PMID:23752591) Ensembl
MGI
PMID:23752591 GO_REF:0000107 MGI:5500979 NCBI chr 1:245,749,342...246,507,279
Ensembl chr 1:245,749,342...246,507,312
JBrowse link
neuromuscular junction development, skeletal muscle fiber term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PMP22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (MGI:5605930|PMID:25014022) MGI PMID:25014022 MGI:5605930 NCBI chr17:15,229,779...15,265,326
Ensembl chr17:15,229,773...15,272,292
JBrowse link
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN3 actinin alpha 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:66,546,395...66,563,334
Ensembl chr11:66,546,395...66,563,334
JBrowse link
G BCL2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1928555|PMID:11146504) Ensembl
MGI
PMID:11146504 GO_REF:0000107 MGI:1928555 NCBI chr18:63,123,346...63,320,280
Ensembl chr18:63,123,346...63,320,128
JBrowse link
G LMOD3 leiomodin 3 involved_in IMP (PMID:25250574) UniProt PMID:25250574 NCBI chr 3:69,106,065...69,122,595
Ensembl chr 3:69,106,065...69,123,032
JBrowse link
G MYF5 myogenic factor 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:80,716,912...80,719,671
Ensembl chr12:80,716,912...80,719,671
JBrowse link
G MYF6 myogenic factor 6 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:80,707,634...80,709,474
Ensembl chr12:80,707,634...80,709,474
JBrowse link
G MYOD1 myogenic differentiation 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:17,719,571...17,722,136
Ensembl chr11:17,719,571...17,722,136
JBrowse link
G MYOG myogenin involved_in ISS
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 1:203,083,129...203,086,012
Ensembl chr 1:203,083,129...203,086,012
JBrowse link
G NIBAN2 niban apoptosis regulator 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:127,505,339...127,579,031
Ensembl chr 9:127,505,339...127,578,989
JBrowse link
G SHOX2 short stature homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:158,095,905...158,106,420
Ensembl chr 3:158,095,905...158,106,420
JBrowse link
regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXO22 F-box protein 22 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3840749|PMID:19319192)
GO_Central
MGI
PMID:19319192 PMID:21873635 MGI:3840749 NCBI chr15:75,903,878...75,942,511
Ensembl chr15:75,903,876...75,942,511
JBrowse link
G HDAC4 histone deacetylase 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3763703|PMID:17786239) Ensembl
MGI
PMID:17786239 GO_REF:0000107 MGI:3763703 NCBI chr 2:239,048,168...239,401,649
Ensembl chr 2:239,048,168...239,401,654
JBrowse link
G HDAC5 histone deacetylase 5 acts_upstream_of_or_within ISO (MGI:3763703|PMID:17786239) MGI PMID:17786239 MGI:3763703 NCBI chr17:44,076,753...44,123,651
Ensembl chr17:44,076,746...44,123,702
JBrowse link
G HDAC9 histone deacetylase 9 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3763703|PMID:17786239) UniProt
MGI
PMID:17786239 GO_REF:0000024 MGI:3763703 NCBI chr 7:18,086,825...19,002,416
Ensembl chr 7:18,086,949...19,002,416
JBrowse link
G NACA nascent polypeptide associated complex subunit alpha involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr12:56,712,427...56,725,299
Ensembl chr12:56,712,305...56,731,628
JBrowse link
skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTA1 actin alpha 1, skeletal muscle involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:229,431,245...229,434,094
Ensembl chr 1:229,430,365...229,434,104
JBrowse link
G AL512428.1 novel protein involved_in IEA InterPro GO_REF:0000002 Ensembl chr 6:24,797,373...24,809,798 JBrowse link
G BIN3 bridging integrator 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5517720|PMID:23872330) Ensembl
MGI
PMID:23872330 GO_REF:0000107 MGI:5517720 NCBI chr 8:22,620,418...22,669,148
Ensembl chr 8:22,620,418...22,669,148
JBrowse link
G CACNA1S calcium voltage-gated channel subunit alpha1 S acts_upstream_of_or_within ISO (MGI:66718|PMID:8143864)
(MGI:3630139|PMID:289331), (MGI:53207|PMID:8462749)
MGI PMID:289331 PMID:8143864 PMID:8462749 MGI:3630139 MGI:53207 MGI:66718 NCBI chr 1:201,039,509...201,112,453
Ensembl chr 1:201,039,512...201,112,451
JBrowse link
G CAV2 caveolin 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3695802|PMID:17200204) UniProt
MGI
PMID:17200204 GO_REF:0000024 MGI:3695802 NCBI chr 7:116,499,738...116,508,541
Ensembl chr 7:116,287,380...116,508,541
JBrowse link
G DNER delta/notch like EGF repeat containing involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3583881|PMID:15965470) Ensembl
MGI
PMID:15965470 GO_REF:0000107 MGI:3583881 NCBI chr 2:229,357,629...229,714,555
Ensembl chr 2:229,357,629...229,714,555
JBrowse link
G GPX1 glutathione peroxidase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3662804|PMID:16962942) Ensembl
MGI
PMID:16962942 GO_REF:0000107 MGI:3662804 NCBI chr 3:49,357,176...49,358,353
Ensembl chr 3:49,357,176...49,358,353
JBrowse link
G HOMER1 homer scaffold protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3784629|PMID:18268005) Ensembl
MGI
PMID:18268005 GO_REF:0000107 MGI:3784629 NCBI chr 5:79,372,636...79,514,134
Ensembl chr 5:79,372,636...79,514,134
JBrowse link
G HOTTIP HOXA distal transcript antisense RNA acts_upstream_of_or_within ISO (MGI:5788088|PMID:25909911) MGI PMID:25909911 MGI:5788088 NCBI chr 7:27,200,421...27,207,259
Ensembl chr 7:27,198,575...27,207,259
JBrowse link
G KEL Kell metallo-endopeptidase (Kell blood group) involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5550316|PMID:24405768) Ensembl
MGI
PMID:24405768 GO_REF:0000107 MGI:5550316 NCBI chr 7:142,941,114...142,962,363
Ensembl chr 7:142,941,114...142,962,363
JBrowse link
G KLHL40 kelch like family member 40 involved_in
acts_upstream_of_or_within
IBA
ISO
ISS
(PMID:21873635)
(MGI:5586592|PMID:24960163)
GO_Central
MGI
UniProt
PMID:21873635 PMID:24960163 GO_REF:0000024 MGI:5586592 NCBI chr 3:42,685,537...42,692,544
Ensembl chr 3:42,685,537...42,692,544
JBrowse link
G KLHL41 kelch like family member 41 involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:169,509,702...169,526,258
Ensembl chr 2:169,509,702...169,526,258
JBrowse link
G LMOD3 leiomodin 3 involved_in ISS UniProt GO_REF:0000024 NCBI chr 3:69,106,065...69,122,595
Ensembl chr 3:69,106,065...69,123,032
JBrowse link
G MYHAS myosin heavy chain gene cluster antisense RNA involved_in ISO (MGI:5882697|PMID:28281528) MGI PMID:28281528 MGI:5882697 NCBI chr17:10,383,132...10,625,540
Ensembl chr17:10,383,144...10,623,886
JBrowse link
G MYOD1 myogenic differentiation 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3840749|PMID:19319192) Ensembl
MGI
PMID:19319192 GO_REF:0000107 MGI:3840749 NCBI chr11:17,719,571...17,722,136
Ensembl chr11:17,719,571...17,722,136
JBrowse link
G MYOG myogenin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:62381|PMID:8393145) Ensembl
MGI
PMID:8393145 GO_REF:0000107 MGI:62381 NCBI chr 1:203,083,129...203,086,012
Ensembl chr 1:203,083,129...203,086,012
JBrowse link
G MYOPARR myogenin promoter associated myogenic regulatory antisense long non coding RNA acts_upstream_of_or_within ISO (MGI:6278090|PMID:30622218) MGI PMID:30622218 MGI:6278090 NCBI chr 1:203,083,795...203,088,340 JBrowse link
G MYORG myogenesis regulating glycosidase (putative) involved_in
acts_upstream_of_or_within
IBA
ISO
ISS
IMP
(PMID:21873635)
(MGI:4422154|PMID:19706595)
(PMID:19706595)
GO_Central
MGI
UniProt
PMID:19706595 PMID:21873635 GO_REF:0000024 MGI:4422154 NCBI chr 9:34,366,149...34,376,952
Ensembl chr 9:34,366,666...34,376,898
JBrowse link
G NFATC3 nuclear factor of activated T cells 3 acts_upstream_of_or_within ISO (MGI:1933051|PMID:11254352) MGI PMID:11254352 MGI:1933051 NCBI chr16:68,085,370...68,229,259
Ensembl chr16:68,084,751...68,229,259
JBrowse link
G P2RX2 purinergic receptor P2X 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3766888|PMID:17706883) Ensembl
MGI
PMID:17706883 GO_REF:0000107 MGI:3766888 NCBI chr12:132,618,776...132,623,736
Ensembl chr12:132,618,776...132,622,388
JBrowse link
G PLEC plectin involved_in ISO (MGI:3797705|PMID:18490514)
(MGI:5567855|PMID:24487589)
MGI PMID:18490514 PMID:24487589 MGI:3797705 MGI:5567855 NCBI chr 8:143,915,153...143,976,800
Ensembl chr 8:143,915,153...143,976,734
JBrowse link
G PPP3CA protein phosphatase 3 catalytic subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3586394|PMID:16024798) Ensembl
MGI
PMID:16024798 GO_REF:0000107 MGI:3586394 NCBI chr 4:101,023,418...101,348,295
Ensembl chr 4:101,023,409...101,348,278
JBrowse link
G RCAN1 regulator of calcineurin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3586394|PMID:16024798) Ensembl
MGI
PMID:16024798 GO_REF:0000107 MGI:3586394 NCBI chr21:34,516,442...34,615,123
Ensembl chr21:34,513,142...34,615,113
JBrowse link
G RIPOR2 RHO family interacting cell polarization regulator 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:24,804,284...25,042,288
Ensembl chr 6:24,804,282...25,042,170
JBrowse link
G RYR1 ryanodine receptor 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr19:38,433,691...38,587,564
Ensembl chr19:38,433,691...38,587,564
JBrowse link
G SELENON selenoprotein N involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:5494499|PMID:23325319)
GO_Central
MGI
PMID:21873635 PMID:23325319 MGI:5494499 NCBI chr 1:25,800,193...25,818,221
Ensembl chr 1:25,800,193...25,818,221
JBrowse link
G SIX1 SIX homeobox 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:60,643,421...60,649,489
Ensembl chr14:60,643,421...60,658,259
JBrowse link
G SKI SKI proto-oncogene involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:1095997|PMID:9284043) BHF-UCL
MGI
PMID:9284043 GO_REF:0000024 MGI:1095997 NCBI chr 1:2,228,319...2,310,213
Ensembl chr 1:2,228,319...2,310,213
JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5438143|PMID:22987639) Ensembl
MGI
PMID:22987639 GO_REF:0000107 MGI:5438143 NCBI chr 7:129,188,633...129,213,548
Ensembl chr 7:129,188,633...129,213,545
JBrowse link
G STAC3 SH3 and cysteine rich domain 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5508972|PMID:23626854) Ensembl
MGI
PMID:23626854 GO_REF:0000107 MGI:5508972 NCBI chr12:57,243,453...57,251,188
Ensembl chr12:57,243,453...57,251,188
JBrowse link
G WNT10B Wnt family member 10B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3581945|PMID:15673614) Ensembl
MGI
PMID:15673614 GO_REF:0000107 MGI:3581945 NCBI chr12:48,965,340...48,979,587
Ensembl chr12:48,965,340...48,971,735
JBrowse link
G XK X-linked Kx blood group acts_upstream_of_or_within ISO (MGI:5550316|PMID:24405768) MGI PMID:24405768 MGI:5550316 NCBI chr  X:37,685,686...37,732,130
Ensembl chr  X:37,685,791...37,732,130
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18666
    developmental process 7387
      anatomical structure development 6725
        cell development 2532
          muscle cell development 224
            myotube cell development 48
              myotube cell development involved in skeletal muscle regeneration 0
              skeletal muscle fiber development + 44
Path 2
Term Annotations click to browse term
  biological_process 18666
    developmental process 7387
      cellular developmental process 5046
        cell differentiation 4942
          muscle cell differentiation 455
            striated muscle cell differentiation 339
              myotube differentiation 146
                myotube cell development 48
                  myotube cell development involved in skeletal muscle regeneration 0
                  skeletal muscle fiber development + 44
paths to the root