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ONTOLOGY REPORT - ANNOTATIONS


Term:myotube cell development
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Accession:GO:0014904 term browser browse the term
Definition:The process aimed at the progression of a myotube cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.


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myotube cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DMD dystrophin acts_upstream_of_or_within ISO (MGI:3849772|PMID:19535499) MGI PMID:19535499 MGI:3849772 NCBI chr  X:26,290,903...28,444,635
Ensembl chr  X:26,290,910...28,333,576
JBrowse link
G IGF1 insulin like growth factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:41,203,320...41,275,964
Ensembl chr15:41,202,518...41,275,794
JBrowse link
G MYOD1 myogenic differentiation 1 involved_in ISO (PMID:10672515) BHF-UCL PMID:10672515 NCBI chr21:40,257,792...40,260,461
Ensembl chr21:40,258,027...40,259,712
JBrowse link
G NFATC2 nuclear factor of activated T cells 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3821556|PMID:18676376) Ensembl
MGI
PMID:18676376 GO_REF:0000107 MGI:3821556 NCBI chr24:37,606,977...37,734,813
Ensembl chr24:37,609,561...37,771,132
JBrowse link
G NFATC3 nuclear factor of activated T cells 3 acts_upstream_of_or_within ISO (MGI:3821556|PMID:18676376) MGI PMID:18676376 MGI:3821556 NCBI chr 5:81,294,656...81,434,256
Ensembl chr 5:81,296,214...81,434,250
JBrowse link
G SMYD3 SET and MYND domain containing 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5500979|PMID:23752591) Ensembl
MGI
PMID:23752591 GO_REF:0000107 MGI:5500979 NCBI chr 7:36,561,080...37,250,336
Ensembl chr 7:36,565,901...37,250,578
JBrowse link
neuromuscular junction development, skeletal muscle fiber term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PMP22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (MGI:5605930|PMID:25014022) MGI PMID:25014022 MGI:5605930 NCBI chr 5:38,806,731...38,839,002
Ensembl chr 5:38,807,826...38,838,971
JBrowse link
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN3 actinin alpha 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:50,787,353...50,801,036
Ensembl chr18:50,787,353...50,801,197
JBrowse link
G BCL2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1928555|PMID:11146504) Ensembl
MGI
PMID:11146504 GO_REF:0000107 MGI:1928555 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658
JBrowse link
G LMOD3 leiomodin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:22,612,916...22,629,207
Ensembl chr20:22,612,946...22,629,214
JBrowse link
G MYF5 myogenic factor 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:23,049,235...23,051,604
Ensembl chr15:23,048,585...23,051,970
JBrowse link
G MYF6 myogenic factor 6 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:23,039,090...23,041,092
Ensembl chr15:23,039,416...23,041,019
JBrowse link
G MYOD1 myogenic differentiation 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:40,257,792...40,260,461
Ensembl chr21:40,258,027...40,259,712
JBrowse link
G MYOG myogenin involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:112,116...114,604
Ensembl chr 7:112,034...113,892
JBrowse link
G SHOX2 short stature homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:51,484,696...51,492,586
Ensembl chr23:51,484,421...51,492,566
JBrowse link
regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXO22 F-box protein 22 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3840749|PMID:19319192)
GO_Central
MGI
PMID:19319192 PMID:21873635 MGI:3840749 NCBI chr30:40,100,768...40,127,708
Ensembl chr30:40,101,540...40,189,159
JBrowse link
G HDAC4 histone deacetylase 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3763703|PMID:17786239) Ensembl
MGI
PMID:17786239 GO_REF:0000107 MGI:3763703 NCBI chr25:49,318,621...49,545,314
Ensembl chr25:49,317,349...49,453,478
JBrowse link
G HDAC5 histone deacetylase 5 acts_upstream_of_or_within ISO (MGI:3763703|PMID:17786239) MGI PMID:17786239 MGI:3763703 NCBI chr 9:19,261,075...19,297,669
Ensembl chr 9:19,260,893...19,297,623
JBrowse link
G HDAC9 histone deacetylase 9 acts_upstream_of_or_within ISO (MGI:3763703|PMID:17786239) MGI PMID:17786239 MGI:3763703 NCBI chr14:32,469,349...33,310,439
Ensembl chr14:32,588,414...33,304,387
JBrowse link
G NACA nascent polypeptide associated complex subunit alpha involved_in ISO (MGI:4867362|PMID:21071677) BHF-UCL PMID:21071677 MGI:4867362 NCBI chr10:938,682...949,103
Ensembl chr10:938,683...949,032
JBrowse link
skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTA1 actin alpha 1, skeletal muscle involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:9,811,726...9,814,533
Ensembl chr 4:9,811,801...9,814,530
JBrowse link
G ACTN1 actinin alpha 1 involved_in ISS AgBase GO_REF:0000024 NCBI chr 8:42,714,806...42,808,318
Ensembl chr 8:42,712,142...42,808,323
JBrowse link
G BIN3 bridging integrator 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5517720|PMID:23872330) Ensembl
MGI
PMID:23872330 GO_REF:0000107 MGI:5517720 NCBI chr25:34,615,683...34,659,739
Ensembl chr25:34,615,249...34,659,755
JBrowse link
G CACNA1S calcium voltage-gated channel subunit alpha1 S acts_upstream_of_or_within ISO (MGI:3630139|PMID:289331), (MGI:53207|PMID:8462749)
(MGI:66718|PMID:8143864)
MGI PMID:289331 PMID:8143864 PMID:8462749 MGI:3630139 MGI:53207 MGI:66718 NCBI chr 7:2,108,716...2,172,246
Ensembl chr 7:2,108,455...2,303,220
JBrowse link
G CAV2 caveolin 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3695802|PMID:17200204) UniProt
MGI
PMID:17200204 GO_REF:0000024 MGI:3695802 NCBI chr14:55,437,622...55,445,481
Ensembl chr14:55,437,622...55,445,469
JBrowse link
G DNER delta/notch like EGF repeat containing involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3583881|PMID:15965470) Ensembl
MGI
PMID:15965470 GO_REF:0000107 MGI:3583881 NCBI chr25:41,709,570...41,887,705
Ensembl chr25:41,710,420...42,019,885
JBrowse link
G GPX1 glutathione peroxidase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3662804|PMID:16962942) Ensembl
MGI
PMID:16962942 GO_REF:0000107 MGI:3662804 NCBI chr20:39,889,165...39,890,253
Ensembl chr20:39,889,174...39,890,260
JBrowse link
G HOMER1 homer scaffold protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3784629|PMID:18268005) Ensembl
MGI
PMID:18268005 GO_REF:0000107 MGI:3784629 NCBI chr 3:27,395,337...27,525,822
Ensembl chr 3:27,400,839...27,523,320
JBrowse link
G KEL Kell metallo-endopeptidase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5550316|PMID:24405768) Ensembl
MGI
PMID:24405768 GO_REF:0000107 MGI:5550316 NCBI chr16:6,396,724...6,645,221
Ensembl chr16:6,623,824...6,645,094
JBrowse link
G KLHL40 kelch like family member 40 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:5586592|PMID:24960163)
GO_Central
MGI
PMID:21873635 PMID:24960163 MGI:5586592 NCBI chr23:11,812,268...11,820,426
Ensembl chr23:11,813,550...11,820,420
JBrowse link
G KLHL41 kelch like family member 41 involved_in IEA InterPro GO_REF:0000002 NCBI chr36:14,235,845...14,251,621
Ensembl chr36:14,235,941...14,251,083
JBrowse link
G LMOD3 leiomodin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:22,612,916...22,629,207
Ensembl chr20:22,612,946...22,629,214
JBrowse link
G MYOD1 myogenic differentiation 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3840749|PMID:19319192) Ensembl
MGI
PMID:19319192 GO_REF:0000107 MGI:3840749 NCBI chr21:40,257,792...40,260,461
Ensembl chr21:40,258,027...40,259,712
JBrowse link
G MYOG myogenin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:62381|PMID:8393145) Ensembl
MGI
PMID:8393145 GO_REF:0000107 MGI:62381 NCBI chr 7:112,116...114,604
Ensembl chr 7:112,034...113,892
JBrowse link
G MYORG myogenesis regulating glycosidase (putative) involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:4422154|PMID:19706595)
GO_Central
MGI
PMID:19706595 PMID:21873635 MGI:4422154 NCBI chr11:51,070,088...51,077,595
Ensembl chr11:51,071,707...51,073,851
JBrowse link
G NFATC3 nuclear factor of activated T cells 3 acts_upstream_of_or_within ISO (MGI:1933051|PMID:11254352) MGI PMID:11254352 MGI:1933051 NCBI chr 5:81,294,656...81,434,256
Ensembl chr 5:81,296,214...81,434,250
JBrowse link
G P2RX2 purinergic receptor P2X 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3766888|PMID:17706883) Ensembl
MGI
PMID:17706883 GO_REF:0000107 MGI:3766888 NCBI chr26:480,370...485,527
Ensembl chr26:482,425...485,502
JBrowse link
G PLEC plectin involved_in ISO
IEA
(MGI:3797705|PMID:18490514)
(MGI:5567855|PMID:24487589)
MGI
Ensembl
PMID:18490514 PMID:24487589 GO_REF:0000107 MGI:3797705 MGI:5567855 NCBI chr13:37,449,379...37,503,752
Ensembl chr13:37,450,248...37,513,523
JBrowse link
G PPP3CA protein phosphatase 3 catalytic subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3586394|PMID:16024798) Ensembl
MGI
PMID:16024798 GO_REF:0000107 MGI:3586394 NCBI chr32:22,688,141...22,996,693
Ensembl chr32:22,688,143...22,996,688
JBrowse link
G RCAN1 regulator of calcineurin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3586394|PMID:16024798) Ensembl
MGI
PMID:16024798 GO_REF:0000107 MGI:3586394 NCBI chr31:29,908,046...30,002,412
Ensembl chr31:29,909,388...30,002,418
JBrowse link
G RIPOR2 RHO family interacting cell polarization regulator 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr35:22,823,053...23,041,765
Ensembl chr35:22,824,106...23,041,743
JBrowse link
G RYR1 ryanodine receptor 1 involved_in ISO (MGI:3764002|PMID:18003898) UniProt PMID:18003898 MGI:3764002 NCBI chr 1:114,461,350...114,579,577
Ensembl chr 1:114,461,348...114,579,493
JBrowse link
G SELENON selenoprotein N acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:5494499|PMID:23325319)
(PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:23325319 MGI:5494499 NCBI chr 2:74,134,448...74,149,585 JBrowse link
G SIX1 SIX homeobox 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:35,676,705...35,679,534
Ensembl chr 8:35,676,479...35,679,534
JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (MGI:1095997|PMID:9284043) MGI PMID:9284043 MGI:1095997 NCBI chr 5:57,144,178...57,216,385
Ensembl chr 5:57,145,825...57,214,403
JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5438143|PMID:22987639) Ensembl
MGI
PMID:22987639 GO_REF:0000107 MGI:5438143 NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033
JBrowse link
G STAC3 SH3 and cysteine rich domain 3 acts_upstream_of_or_within ISO (MGI:5508972|PMID:23626854) MGI PMID:23626854 MGI:5508972 NCBI chr10:1,370,340...1,377,769 JBrowse link
G WNT10B Wnt family member 10B involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:5,599,905...5,605,506
Ensembl chr27:5,601,089...5,605,501
JBrowse link
G XK X-linked Kx blood group acts_upstream_of_or_within ISO (MGI:5550316|PMID:24405768) MGI PMID:24405768 MGI:5550316 NCBI chr  X:32,453,404...32,498,145
Ensembl chr  X:32,453,570...32,495,110
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16235
    developmental process 6382
      anatomical structure development 5915
        cell development 2377
          muscle cell development 215
            myotube cell development 44
              myotube cell development involved in skeletal muscle regeneration 0
              skeletal muscle fiber development + 40
Path 2
Term Annotations click to browse term
  biological_process 16235
    developmental process 6382
      cellular developmental process 4226
        cell differentiation 4131
          muscle cell differentiation 425
            striated muscle cell differentiation 321
              myotube differentiation 132
                myotube cell development 44
                  myotube cell development involved in skeletal muscle regeneration 0
                  skeletal muscle fiber development + 40
paths to the root