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ONTOLOGY REPORT - ANNOTATIONS


Term:myotube cell development
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Accession:GO:0014904 term browser browse the term
Definition:The process aimed at the progression of a myotube cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.


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myotube cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DMD dystrophin acts_upstream_of_or_within ISO (MGI:3849772|PMID:19535499) MGI PMID:19535499 MGI:3849772 NCBI chr  X:23,728,650...26,338,849
Ensembl chr  X:31,282,415...33,492,733
JBrowse link
G IGF1 insulin like growth factor 1 involved_in ISO (PMID:17531227) BHF-UCL PMID:17531227 NCBI chr12:99,986,887...100,066,773
Ensembl chr12:103,385,911...103,462,177
JBrowse link
G MYOD1 myogenic differentiation 1 involved_in ISO (PMID:10672515) BHF-UCL PMID:10672515 NCBI chr11:17,772,317...17,774,884
Ensembl chr11:17,456,124...17,458,690
JBrowse link
G NFATC2 nuclear factor of activated T cells 2 acts_upstream_of_or_within ISO (MGI:3821556|PMID:18676376) MGI PMID:18676376 MGI:3821556 NCBI chr20:47,734,054...47,910,435
Ensembl chr20:48,858,238...49,034,007
JBrowse link
G NFATC3 nuclear factor of activated T cells 3 acts_upstream_of_or_within ISO (MGI:3821556|PMID:18676376) MGI PMID:18676376 MGI:3821556 NCBI chr16:48,456,144...48,603,306
Ensembl chr16:67,888,806...67,996,274
JBrowse link
G SMYD3 SET and MYND domain containing 3 acts_upstream_of_or_within ISO (MGI:5500979|PMID:23752591) MGI PMID:23752591 MGI:5500979 NCBI chr 1:221,371,348...222,125,774
Ensembl chr 1:226,737,960...227,481,191
JBrowse link
neuromuscular junction development, skeletal muscle fiber term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PMP22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (MGI:5605930|PMID:25014022) MGI PMID:25014022 MGI:5605930 NCBI chr17:36,389,549...36,425,161
Ensembl chr17:41,038,302...41,073,872
JBrowse link
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN3 actinin alpha 3 involved_in ISO (MGI:3778600|PMID:18178581) UniProt PMID:18178581 MGI:3778600 NCBI chr11:61,905,722...61,922,227
Ensembl chr11:65,228,713...65,245,429
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within ISO (MGI:1928555|PMID:11146504) MGI PMID:11146504 MGI:1928555 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100
JBrowse link
G LMOD3 leiomodin 3 involved_in ISO (PMID:25250574) UniProt PMID:25250574 NCBI chr 3:69,042,870...69,058,704
Ensembl chr 3:70,410,288...70,424,702
JBrowse link
G MYOG myogenin involved_in ISO (MGI:62381|PMID:8393145) UniProt PMID:8393145 MGI:62381 NCBI chr 1:178,684,933...178,687,971
Ensembl chr 1:182,979,700...182,982,611
JBrowse link
G SHOX2 short stature homeobox 2 involved_in ISO (MGI:4946446|PMID:21156168) BHF-UCL PMID:21156168 MGI:4946446 NCBI chr 3:155,138,969...155,149,619
Ensembl chr 3:163,190,284...163,199,239
JBrowse link
regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXO22 F-box protein 22 acts_upstream_of_or_within ISO (MGI:3840749|PMID:19319192) MGI PMID:19319192 MGI:3840749 NCBI chr15:54,817,076...54,849,271
Ensembl chr15:74,410,213...74,441,609
JBrowse link
G HDAC4 histone deacetylase 4 acts_upstream_of_or_within ISO (MGI:3763703|PMID:17786239) MGI PMID:17786239 MGI:3763703 NCBI chr2B:126,287,745...126,649,815
Ensembl chr2B:245,123,061...245,427,054
JBrowse link
G HDAC5 histone deacetylase 5 acts_upstream_of_or_within ISO (MGI:3763703|PMID:17786239) MGI PMID:17786239 MGI:3763703 NCBI chr17:13,273,052...13,319,695
Ensembl chr17:13,446,836...13,479,140
JBrowse link
G HDAC9 histone deacetylase 9 acts_upstream_of_or_within ISO (MGI:3763703|PMID:17786239) MGI PMID:17786239 MGI:3763703 NCBI chr 7:18,740,580...19,653,615
Ensembl chr 7:18,138,761...18,970,717
JBrowse link
G NACA nascent polypeptide associated complex subunit alpha involved_in ISO (MGI:4867362|PMID:21071677) BHF-UCL PMID:21071677 MGI:4867362 NCBI chr12:32,180,823...32,195,645
Ensembl chr12:32,434,366...32,447,510
JBrowse link
skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTA1 actin alpha 1, skeletal muscle involved_in ISO (MGI:78319|PMID:2731651) UniProt PMID:2731651 MGI:78319 NCBI chr 1:204,975,646...204,978,523
Ensembl chr 1:210,007,622...210,010,469
JBrowse link
G BIN3 bridging integrator 3 acts_upstream_of_or_within ISO (MGI:5517720|PMID:23872330) MGI PMID:23872330 MGI:5517720 NCBI chr 8:21,870,784...21,919,077
Ensembl chr 8:18,809,582...18,858,912
JBrowse link
G CACNA1S calcium voltage-gated channel subunit alpha1 S acts_upstream_of_or_within ISO (MGI:66718|PMID:8143864)
(MGI:3630139|PMID:289331), (MGI:53207|PMID:8462749)
MGI PMID:289331 PMID:8143864 PMID:8462749 MGI:3630139 MGI:53207 MGI:66718 NCBI chr 1:176,639,189...176,712,171
Ensembl chr 1:180,941,836...181,014,823
JBrowse link
G CAV2 caveolin 2 acts_upstream_of_or_within ISO (MGI:3695802|PMID:17200204) MGI PMID:17200204 MGI:3695802 NCBI chr 7:108,254,074...108,480,716
Ensembl chr 7:121,168,579...121,177,415
JBrowse link
G DNER delta/notch like EGF repeat containing acts_upstream_of_or_within ISO (MGI:3583881|PMID:15965470) MGI PMID:15965470 MGI:3583881 NCBI chr2B:116,604,193...116,963,026
Ensembl chr2B:235,409,108...235,642,161
JBrowse link
G GPX1 glutathione peroxidase 1 acts_upstream_of_or_within ISO (MGI:3662804|PMID:16962942) MGI PMID:16962942 MGI:3662804 NCBI chr 3:49,280,038...49,281,455
Ensembl chr 3:50,360,947...50,361,826
JBrowse link
G HOMER1 homer scaffold protein 1 acts_upstream_of_or_within ISO (MGI:3784629|PMID:18268005) MGI PMID:18268005 MGI:3784629 NCBI chr 5:35,794,627...35,936,111
Ensembl chr 5:36,064,665...36,205,928
JBrowse link
G KLHL40 kelch like family member 40 acts_upstream_of_or_within
involved_in
ISO (MGI:5586592|PMID:24960163)
(MGI:5700633|PMID:25940086)
MGI
UniProt
PMID:24960163 PMID:25940086 MGI:5586592 MGI:5700633 NCBI chr 3:42,592,977...42,600,100
Ensembl chr 3:43,657,128...43,664,055
JBrowse link
G LMOD3 leiomodin 3 involved_in ISO (MGI:5644091|PMID:25774500), (MGI:5648755|PMID:26035871) UniProt PMID:25774500 PMID:26035871 MGI:5644091 MGI:5648755 NCBI chr 3:69,042,870...69,058,704
Ensembl chr 3:70,410,288...70,424,702
JBrowse link
G LOC100989368 Kell metallo-endopeptidase (Kell blood group) acts_upstream_of_or_within ISO (MGI:5550316|PMID:24405768) MGI PMID:24405768 MGI:5550316 NCBI chr 7:134,897,567...135,237,214
Ensembl chr 7:147,423,103...147,443,895
Ensembl chr 7:147,423,103...147,443,895
JBrowse link
G MYOD1 myogenic differentiation 1 acts_upstream_of_or_within ISO (MGI:3840749|PMID:19319192) MGI PMID:19319192 MGI:3840749 NCBI chr11:17,772,317...17,774,884
Ensembl chr11:17,456,124...17,458,690
JBrowse link
G MYOG myogenin acts_upstream_of_or_within ISO (MGI:62381|PMID:8393145) MGI PMID:8393145 MGI:62381 NCBI chr 1:178,684,933...178,687,971
Ensembl chr 1:182,979,700...182,982,611
JBrowse link
G MYORG myogenesis regulating glycosidase (putative) involved_in
acts_upstream_of_or_within
ISO (PMID:19706595)
(MGI:4422154|PMID:19706595)
UniProt
MGI
PMID:19706595 MGI:4422154 NCBI chr 9:34,205,177...34,213,351
Ensembl chr 9:35,015,847...35,017,991
JBrowse link
G NFATC3 nuclear factor of activated T cells 3 acts_upstream_of_or_within ISO (MGI:1933051|PMID:11254352) MGI PMID:11254352 MGI:1933051 NCBI chr16:48,456,144...48,603,306
Ensembl chr16:67,888,806...67,996,274
JBrowse link
G P2RX2 purinergic receptor P2X 2 acts_upstream_of_or_within ISO (MGI:3766888|PMID:17706883) MGI PMID:17706883 MGI:3766888 NCBI chr12:129,969,793...129,974,399 JBrowse link
G PLEC plectin involved_in ISO (MGI:3797705|PMID:18490514)
(MGI:5567855|PMID:24487589)
MGI PMID:18490514 PMID:24487589 MGI:3797705 MGI:5567855 NCBI chr 8:140,681,252...140,742,753
Ensembl chr 8:143,674,696...143,712,433
JBrowse link
G PPP3CA protein phosphatase 3 catalytic subunit alpha acts_upstream_of_or_within ISO (MGI:3586394|PMID:16024798) MGI PMID:16024798 MGI:3586394 NCBI chr 4:93,447,095...93,770,339
Ensembl chr 4:104,113,520...104,435,394
JBrowse link
G RCAN1 regulator of calcineurin 1 acts_upstream_of_or_within ISO (MGI:3586394|PMID:16024798) MGI PMID:16024798 MGI:3586394 NCBI chr21:20,889,123...20,987,964
Ensembl chr21:34,258,355...34,267,025
JBrowse link
G RYR1 ryanodine receptor 1 involved_in ISO (MGI:3764002|PMID:18003898) UniProt PMID:18003898 MGI:3764002 NCBI chr19:35,527,466...35,685,446
Ensembl chr19:44,106,036...44,256,327
JBrowse link
G SELENON selenoprotein N acts_upstream_of_or_within ISO (MGI:5494499|PMID:23325319) MGI PMID:23325319 MGI:5494499 NCBI chr 1:25,058,907...25,076,817
Ensembl chr 1:26,127,125...26,141,745
JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (MGI:1095997|PMID:9284043) MGI PMID:9284043 MGI:1095997 NCBI chr 1:944,428...1,029,695
Ensembl chr 1:2,091,620...2,174,080
JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within ISO (MGI:5438143|PMID:22987639) MGI PMID:22987639 MGI:5438143 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048
JBrowse link
G STAC3 SH3 and cysteine rich domain 3 acts_upstream_of_or_within ISO (MGI:5508972|PMID:23626854) MGI PMID:23626854 MGI:5508972 NCBI chr12:31,674,537...31,683,917
Ensembl chr12:31,928,955...31,936,251
JBrowse link
G WNT10B Wnt family member 10B acts_upstream_of_or_within ISO (MGI:3581945|PMID:15673614) MGI PMID:15673614 MGI:3581945 NCBI chr12:39,771,163...39,785,411
Ensembl chr12:40,659,106...40,665,734
JBrowse link
G XK X-linked Kx blood group acts_upstream_of_or_within ISO (MGI:5550316|PMID:24405768) MGI PMID:24405768 MGI:5550316 NCBI chr  X:30,136,046...30,182,541
Ensembl chr  X:37,846,539...37,892,348
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12613
    developmental process 5882
      anatomical structure development 5485
        cell development 2180
          muscle cell development 193
            myotube cell development 38
              myotube cell development involved in skeletal muscle regeneration 0
              skeletal muscle fiber development + 34
Path 2
Term Annotations click to browse term
  biological_process 12613
    developmental process 5882
      cellular developmental process 3811
        cell differentiation 3744
          muscle cell differentiation 401
            striated muscle cell differentiation 301
              myotube differentiation 128
                myotube cell development 38
                  myotube cell development involved in skeletal muscle regeneration 0
                  skeletal muscle fiber development + 34
paths to the root