Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
go back to main search page
Accession:GO:0014808 term browser browse the term
Definition:The process in which the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol occurs via calcium release channels.


show annotations for term's descendants           Sort by:
release of sequestered calcium ion into cytosol by sarcoplasmic reticulum term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCL3L1 chemokine (C-C motif) ligand 3-like 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr12:39,491,999...39,493,345
Ensembl chr12:39,491,914...39,493,774 		JBrowse link
G CCR5 C-C motif chemokine receptor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:29,382,383...29,387,902
Ensembl chr13:29,383,303...29,387,895 		JBrowse link
G RYR1 ryanodine receptor 1 involved_in ISS
IBA
IEA		 UniProt
GO_Central
TreeGrafter		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:47,339,759...47,458,457
Ensembl chr 6:47,343,768...47,458,458 		JBrowse link
G RYR2 ryanodine receptor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:12089338) Ensembl
MGI
TreeGrafter
GO_Central		 PMID:12089338 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr14:53,652,140...54,406,691
Ensembl chr14:53,652,485...54,192,063 		JBrowse link
G RYR3 ryanodine receptor 3 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:80,640,030...81,208,576
Ensembl chr 7:80,640,123...81,208,491 		JBrowse link
G TMEM38A transmembrane protein 38A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17611541) Ensembl
MGI		 PMID:17611541 GO_REF:0000107 NCBI chr 2:60,929,043...60,960,527
Ensembl chr 2:60,929,049...60,960,467 		JBrowse link
G TMEM38B transmembrane protein 38B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17611541) Ensembl
MGI		 PMID:17611541 GO_REF:0000107 NCBI chr 1:246,973,447...247,024,019
Ensembl chr 1:246,973,436...247,027,527 		JBrowse link
G TRDN triadin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19383796) Ensembl
MGI		 PMID:19383796 GO_REF:0000107 NCBI chr 1:39,180,544...39,567,245
Ensembl chr 1:39,180,913...39,567,240 		JBrowse link
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANK2 ankyrin 2 involved_in ISO (PMID:17178715)
(MGI:5427070|PMID:21859974), (MGI:5430893|PMID:17178715)		 BHF-UCL PMID:17178715 PMID:21859974 MGI:5427070 MGI:5430893 NCBI chr 8:109,306,793...109,661,970 JBrowse link
G CASQ2 calsequestrin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:9525981) Ensembl
MGI
GO_Central
TreeGrafter		 PMID:9525981 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:104,918,204...104,984,019
Ensembl chr 4:104,918,501...104,983,607 		JBrowse link
G DMD dystrophin involved_in ISO (MGI:4420848|PMID:20080623) BHF-UCL PMID:20080623 MGI:4420848 NCBI chr  X:27,028,223...29,650,728
Ensembl chr  X:27,028,231...28,383,840 		JBrowse link
G FKBP1B FKBP prolyl isomerase 1B involved_in IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:114,623,529...114,636,200
Ensembl chr 3:114,623,532...114,634,628 		JBrowse link
G LOC100738909 protein FAM228B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:114,537,223...114,577,993
Ensembl chr 3:114,537,226...114,577,956 		JBrowse link
G PLN phospholamban involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8831698) Ensembl
MGI		 PMID:8831698 GO_REF:0000107 NCBI chr 1:43,449,354...43,458,925
Ensembl chr 1:43,449,354...43,458,925 		JBrowse link
G RYR2 ryanodine receptor 2 involved_in ISO (MGI:3621834|PMID:12837242) BHF-UCL PMID:12837242 MGI:3621834 NCBI chr14:53,652,140...54,406,691
Ensembl chr14:53,652,485...54,192,063 		JBrowse link
G SLC8A1 solute carrier family 8 member A1 involved_in ISO PMID:21779914 BHF-UCL PMID:21779914 RGD:8554732 NCBI chr 3:99,823,503...100,257,306
Ensembl chr 3:99,897,162...100,244,759 		JBrowse link
G TMEM38A transmembrane protein 38A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17611541) Ensembl
MGI		 PMID:17611541 GO_REF:0000107 NCBI chr 2:60,929,043...60,960,527
Ensembl chr 2:60,929,049...60,960,467 		JBrowse link
G TMEM38B transmembrane protein 38B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17611541) Ensembl
MGI		 PMID:17611541 GO_REF:0000107 NCBI chr 1:246,973,447...247,024,019
Ensembl chr 1:246,973,436...247,027,527 		JBrowse link
regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CALM1 calmodulin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:112,160,823...112,171,754
Ensembl chr 7:112,160,806...112,171,744 		JBrowse link
G CALM2 calmodulin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:93,371,765...93,386,378
Ensembl chr 3:93,372,045...93,386,218 		JBrowse link
G CALM3 calmodulin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:52,506,979...52,516,704
Ensembl chr 6:52,506,674...52,516,703 		JBrowse link
G CAMK2D calcium/calmodulin dependent protein kinase II delta involved_in ISO PMID:12676813 BHF-UCL PMID:12676813 RGD:10047271 NCBI chr 8:108,916,019...109,221,317
Ensembl chr 8:108,915,572...109,222,905 		JBrowse link
G CASQ1 calsequestrin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12419813)
(PMID:17627988)		 Ensembl
MGI		 PMID:12419813 PMID:17627988 GO_REF:0000107 NCBI chr 4:90,276,752...90,288,990
Ensembl chr 4:90,276,757...90,288,250 		JBrowse link
G CASQ2 calsequestrin 2 involved_in ISO (PMID:15041652)
(MGI:3689635|PMID:16932808)		 BHF-UCL
UniProt		 PMID:15041652 PMID:16932808 MGI:3689635 NCBI chr 4:104,918,204...104,984,019
Ensembl chr 4:104,918,501...104,983,607 		JBrowse link
G CHD7 chromodomain helicase DNA binding protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26102480) Ensembl
MGI		 PMID:26102480 GO_REF:0000107 NCBI chr 4:72,572,455...72,754,443
Ensembl chr 4:72,573,453...72,694,146 		JBrowse link
G CLIC2 chloride intracellular channel 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:125,546,451...125,560,059
Ensembl chr  X:125,546,467...125,570,523 		JBrowse link
G DHRS7C dehydrogenase/reductase 7C involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21995425) Ensembl
MGI		 PMID:21995425 GO_REF:0000107 NCBI chr12:54,647,773...54,661,442
Ensembl chr12:54,641,178...54,661,447 		JBrowse link
G DMD dystrophin involved_in ISO (MGI:4420848|PMID:20080623), (MGI:5487906|PMID:23263329) BHF-UCL PMID:20080623 PMID:23263329 MGI:4420848 MGI:5487906 NCBI chr  X:27,028,223...29,650,728
Ensembl chr  X:27,028,231...28,383,840 		JBrowse link
G FKBP1B FKBP prolyl isomerase 1B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14592808), (PMID:19578067)
(PMID:16672364)		 Ensembl
MGI		 PMID:14592808 PMID:16672364 PMID:19578067 GO_REF:0000107 NCBI chr 3:114,623,529...114,636,200
Ensembl chr 3:114,623,532...114,634,628 		JBrowse link
G GSTO1 glutathione S-transferase omega 1 involved_in ISO (PMID:11035031) BHF-UCL PMID:11035031 NCBI chr14:115,206,434...115,216,624
Ensembl chr14:115,206,188...115,216,613 		JBrowse link
G HRC histidine rich calcium binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:54,337,348...54,341,638
Ensembl chr 6:54,337,347...54,341,625 		JBrowse link
G METTL21C methyltransferase 21C, AARS1 lysine acts_upstream_of_or_within ISO (PMID:24677265) MGI PMID:24677265 NCBI chr11:71,008,854...71,021,640
Ensembl chr11:71,008,846...71,020,730 		JBrowse link
G MIR1 microRNA mir-1 involved_in
acts_upstream_of		 ISO (PMID:19131648) BHF-UCL PMID:19131648 NCBI chr17:61,894,036...61,894,143
Ensembl chr17:61,894,036...61,894,143 		JBrowse link
G PDE4D phosphodiesterase 4D involved_in ISO (MGI:3690823|PMID:16213210) BHF-UCL PMID:16213210 MGI:3690823 NCBI chr16:37,897,300...39,406,534
Ensembl chr16:37,897,302...39,306,364 		JBrowse link
G PLN phospholamban involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9118481) Ensembl
MGI		 PMID:9118481 GO_REF:0000107 NCBI chr 1:43,449,354...43,458,925
Ensembl chr 1:43,449,354...43,458,925 		JBrowse link
G TRDN triadin involved_in ISO
IEA
IBA		 RGD
TreeGrafter
GO_Central		 PMID:17569730 GO_REF:0000033 GO_REF:0000118 RGD:2314601 NCBI chr 1:39,180,544...39,567,245
Ensembl chr 1:39,180,913...39,567,240 		JBrowse link
regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASQ1 calsequestrin 1 involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 (PMID:17627988) Ensembl
GO_Central
TreeGrafter
MGI		 PMID:17627988 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:90,276,752...90,288,990
Ensembl chr 4:90,276,757...90,288,250 		JBrowse link
G DMD dystrophin involved_in ISO (MGI:3837615|PMID:19198614) BHF-UCL PMID:19198614 MGI:3837615 NCBI chr  X:27,028,223...29,650,728
Ensembl chr  X:27,028,231...28,383,840 		JBrowse link
G FKBP1A FKBP prolyl isomerase 1A involved_in ISO (PMID:7592869) BHF-UCL PMID:7592869 NCBI chr17:33,910,047...33,935,212 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17799
    negative regulation of biological process 5654
      negative regulation of cellular process 5286
        negative regulation of sequestering of calcium ion 128
          release of sequestered calcium ion into cytosol 127
            release of sequestered calcium ion into cytosol by endoplasmic reticulum 31
              release of sequestered calcium ion into cytosol by sarcoplasmic reticulum 29
                regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum + 25
Path 2
Term Annotations click to browse term
  biological_process 17799
    homeostatic process 1881
      cellular homeostasis 920
        intracellular chemical homeostasis 823
          intracellular monoatomic ion homeostasis 554
            intracellular monoatomic cation homeostasis 543
              intracellular calcium ion homeostasis 321
                sequestering of calcium ion 132
                  regulation of sequestering of calcium ion 130
                    negative regulation of sequestering of calcium ion 128
                      release of sequestered calcium ion into cytosol 127
                        release of sequestered calcium ion into cytosol by endoplasmic reticulum 31
                          release of sequestered calcium ion into cytosol by sarcoplasmic reticulum 29
                            regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum + 25
paths to the root