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ONTOLOGY REPORT - ANNOTATIONS

Term:positive regulation of collagen metabolic process
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Accession:GO:0010714 term browser browse the term
Definition:Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the metabolism of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.
Synonyms:exact_synonym: positive regulation of collagen metabolism


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positive regulation of collagen metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RETN resistin ISO RGD PMID:20795947 RGD:7207234 NCBI chr 2:71,484,164...71,485,577
Ensembl chr 2:71,484,169...71,485,616 		JBrowse link
positive regulation of collagen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1B activin A receptor type 1B ISO RGD PMID:27477354 RGD:151665478 NCBI chr 5:17,314,322...17,350,726
Ensembl chr 5:17,314,276...17,350,722 		JBrowse link
G ARRB2 arrestin beta 2 ISO RGD PMID:28274926 RGD:13506828 NCBI chr12:52,161,776...52,170,362
Ensembl chr12:52,161,778...52,170,342 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637 		JBrowse link
G CBX8 chromobox 8 ISO RGD PMID:23572236 RGD:9586727 NCBI chr12:2,562,419...2,565,035
Ensembl chr12:2,562,374...2,565,780 		JBrowse link
G CCL2 chemokine (C-C motif) ligand 2 ISO RGD PMID:8663511 RGD:8549527 NCBI chr12:40,798,109...40,800,013
Ensembl chr12:40,798,109...40,800,026 		JBrowse link
G CCN2 cellular communication network factor 2 ISO RGD PMID:19570811 RGD:2314490 NCBI chr 1:31,674,398...31,677,697
Ensembl chr 1:31,674,394...31,677,691 		JBrowse link
G CREB3L1 cAMP responsive element binding protein 3 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:16,186,206...16,220,948
Ensembl chr 2:16,186,206...16,220,940 		JBrowse link
G DDR2 discoidin domain receptor tyrosine kinase 2 ISO RGD PMID:24938620 PMID:26674152 RGD:11554781 RGD:150429973 NCBI chr 4:87,749,738...87,911,818
Ensembl chr 4:87,756,168...87,911,296 		JBrowse link
G DICER1 dicer 1, ribonuclease III ISO RGD PMID:24337369 RGD:150340618 NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,365,802...116,411,224 		JBrowse link
G ENG endoglin ISO RGD PMID:20156938 RGD:7257540 NCBI chr 1:268,309,379...268,343,861
Ensembl chr 1:268,309,400...268,343,783 		JBrowse link
G EP300 E1A binding protein p300 ISO RGD PMID:18292803 RGD:2312266 NCBI chr 5:7,311,165...7,394,515
Ensembl chr 5:7,311,171...7,393,760 		JBrowse link
G F2 coagulation factor II, thrombin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:15,793,257...15,819,151
Ensembl chr 2:15,791,455...15,819,137 		JBrowse link
G F2R coagulation factor II thrombin receptor involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:85,642,794...85,659,133
Ensembl chr 2:85,641,474...85,656,636 		JBrowse link
G GLI2 GLI family zinc finger 2 ISO RGD PMID:26823780 RGD:155791684 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10208865) Ensembl
MGI		 PMID:10208865 GO_REF:0000107 NCBI chr15:121,083,750...121,090,548
Ensembl chr15:121,083,753...121,090,121 		JBrowse link
G IL18 interleukin 18 ISO RGD PMID:20644901 RGD:4889158 NCBI chr 9:39,839,959...39,861,258
Ensembl chr 9:39,834,973...39,861,219 		JBrowse link
G INHBA inhibin subunit beta A ISO RGD PMID:27477354 RGD:151665478 NCBI chr12:53,115,379...53,117,128
NCBI chr18:52,889,684...52,909,260
Ensembl chr18:52,889,684...52,900,967 		JBrowse link
G ITGA2 integrin subunit alpha 2 ISO RGD PMID:10867645 RGD:2307406 NCBI chr16:32,336,240...32,440,311
Ensembl chr16:32,336,292...32,437,103 		JBrowse link
G LARP6 La ribonucleoprotein 6, translational regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:168,508,472...168,530,439
Ensembl chr 1:168,507,976...168,530,239 		JBrowse link
G LTBP1 latent transforming growth factor beta binding protein 1 ISO RGD PMID:9607192 RGD:10412058 NCBI chr 3:106,300,748...106,724,538
Ensembl chr 3:106,300,750...106,724,737 		JBrowse link
G MIR21 microRNA mir-21 ISO RGD PMID:29084974 RGD:41404715 NCBI chr12:36,065,267...36,065,358
Ensembl chr12:36,065,267...36,065,358 		JBrowse link
G MKX mohawk homeobox acts_upstream_of_or_within ISO (PMID:20498044) MGI PMID:20498044 NCBI chr10:39,096,778...39,173,384
Ensembl chr10:39,096,782...39,172,198 		JBrowse link
G MYB MYB proto-oncogene, transcription factor ISO RGD PMID:15534927 RGD:11532676 NCBI chr 1:28,819,500...28,856,222
Ensembl chr 1:28,819,503...28,856,999 		JBrowse link
G PDGFB platelet derived growth factor subunit B ISO RGD PMID:15358192 RGD:10449487 Ensembl chr 5:8,986,462...9,007,435 JBrowse link
G PDGFRB platelet derived growth factor receptor beta ISO RGD PMID:15978205 RGD:2292205 NCBI chr 2:151,155,753...151,192,818
Ensembl chr 2:151,155,756...151,192,647 		JBrowse link
G PRDX5 peroxiredoxin 5 involved_in ISO (PMID:15276323) UniProt PMID:15276323 NCBI chr 2:7,798,672...7,801,955
Ensembl chr 2:7,798,670...7,802,952 		JBrowse link
G RGCC regulator of cell cycle involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:25,481,845...25,496,548
Ensembl chr11:25,478,879...25,496,519 		JBrowse link
G SCX scleraxis bHLH transcription factor involved_in ISO (MGI:5294534|PMID:19362560)
(MGI:4413438|PMID:18802027)		 UniProt PMID:18802027 PMID:19362560 MGI:4413438 MGI:5294534 NCBI chr 4:500,884...503,276
Ensembl chr 4:500,526...503,193 		JBrowse link
G SERPINB7 serpin family B member 7 ISO RGD PMID:21945418 RGD:7207383 NCBI chr 1:157,953,872...157,999,242
Ensembl chr 1:157,953,877...157,998,842 		JBrowse link
G SERPINE1 serpin family E member 1 ISO RGD PMID:15828931 RGD:13208547 NCBI chr 3:8,863,738...8,871,572
Ensembl chr 3:8,863,695...8,871,547 		JBrowse link
G SERPINF2 serpin family F member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:47,934,551...47,942,283
Ensembl chr12:47,933,864...47,942,285 		JBrowse link
G SUCO SUN domain containing ossification factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:114,916,957...115,007,979
Ensembl chr 9:114,916,855...115,007,972 		JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in ISO
ISS		 RGD
UniProt		 PMID:26923362 GO_REF:0000024 RGD:11073665 NCBI chr 6:49,332,169...49,348,642
Ensembl chr 6:49,332,173...49,349,046 		JBrowse link
G TGFB3 transforming growth factor beta 3 involved_in IEA
ISS		 Ensembl
AgBase		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:99,133,873...99,162,239
Ensembl chr 7:99,133,879...99,162,232 		JBrowse link
G UCN urocortin ISO RGD PMID:11087261 RGD:1642796 NCBI chr 3:111,834,082...111,835,932
Ensembl chr 3:111,835,125...111,835,508 		JBrowse link
G UTS2 urotensin 2 ISO RGD PMID:17184580 PMID:18475149 RGD:2306811 RGD:2306814 NCBI chr 6:68,552,889...68,560,827
Ensembl chr 6:68,552,887...68,559,674 		JBrowse link
G VIM vimentin involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:43,516,441...43,526,172
Ensembl chr10:43,517,307...43,526,170 		JBrowse link
G WNT4 Wnt family member 4 involved_in ISO (PMID:17720811) BHF-UCL PMID:17720811 NCBI chr 6:80,110,238...80,138,165 JBrowse link
positive regulation of collagen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IDUA alpha-L-iduronidase acts_upstream_of_or_within ISO (PMID:19834056) MGI PMID:19834056 NCBI chr 8:334,604...351,970
Ensembl chr 8:334,617...351,969 		JBrowse link
G VSIR V-set immunoregulatory receptor involved_in ISO (PMID:20666777) UniProt PMID:20666777 NCBI chr14:74,667,081...74,693,347
Ensembl chr14:74,666,624...74,693,281 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17799
    positive regulation of biological process 6500
      positive regulation of metabolic process 3696
        positive regulation of collagen metabolic process 41
          positive regulation of collagen biosynthetic process 38
          positive regulation of collagen catabolic process 2
Path 2
Term Annotations click to browse term
  biological_process 17799
    biological regulation 12896
      regulation of biological process 12533
        positive regulation of biological process 6500
          positive regulation of metabolic process 3696
            positive regulation of collagen metabolic process 41
              positive regulation of collagen biosynthetic process 38
              positive regulation of collagen catabolic process 2
paths to the root