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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of collagen metabolic process
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Accession:GO:0010714 term browser browse the term
Definition:Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the metabolism of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.
Synonyms:exact_synonym: positive regulation of collagen metabolism



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positive regulation of collagen metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Retn resistin IMP RGD PMID:20795947 RGD:7207234 NCBI chr12:6,508,653...6,511,115 JBrowse link
positive regulation of collagen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1b activin A receptor type 1B IMP RGD PMID:27477354 RGD:151665478 NCBI chr 7:134,164,987...134,208,389 JBrowse link
G Arrb2 arrestin, beta 2 IMP RGD PMID:28274926 RGD:13506828 NCBI chr10:55,645,539...55,653,485 JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:17720811)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:17720811 GO_REF:0000024 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145 JBrowse link
G Cbx8 chromobox 8 IMP RGD PMID:23572236 RGD:9586727 NCBI chr10:104,793,062...104,795,500 JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IDA RGD PMID:8663511 RGD:8549527 NCBI chr10:67,503,077...67,504,875 JBrowse link
G Ccn2 cellular communication network factor 2 IMP RGD PMID:19570811 RGD:2314490 NCBI chr 1:22,621,498...22,624,614 JBrowse link
G Creb3l1 cAMP responsive element binding protein 3-like 1 involved_in ISO
IEA
ISS
(PMID:25310401)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:25310401 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:98,408,240...98,449,104 JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 IMP
IDA
RGD PMID:26674152 PMID:24938620 RGD:11554781, RGD:150429973 NCBI chr13:84,726,412...84,851,032 JBrowse link
G Dicer1 dicer 1 ribonuclease III IMP RGD PMID:24337369 RGD:150340618 NCBI chr 6:123,627,529...123,692,278 JBrowse link
G Eng endoglin IMP RGD PMID:20156938 RGD:7257540 NCBI chr 3:36,332,190...36,370,324 JBrowse link
G Ep300 E1A binding protein p300 IMP RGD PMID:18292803 RGD:2312266 NCBI chr 7:114,987,857...115,058,652 JBrowse link
G F2 coagulation factor II, thrombin involved_in IEA
ISO
GO_REF:0000107
(PMID:9639571)
Ensembl
RGD
PMID:9639571 GO_REF:0000107 NCBI chr 3:98,051,958...98,065,246 JBrowse link
G F2r coagulation factor II (thrombin) receptor involved_in ISO
ISS
IEA
(PMID:9639571)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:9639571 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:26,869,343...26,885,856 JBrowse link
G Gli2 GLI family zinc finger 2 IMP RGD PMID:26823780 RGD:155791684 NCBI chr13:29,946,882...30,163,589 JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:10208865) RGD PMID:10208865 NCBI chr 9:76,504,315...76,510,532 JBrowse link
G Il18 interleukin 18 IDA RGD PMID:20644901 RGD:4889158 NCBI chr 8:59,802,072...59,829,275 JBrowse link
G Inhba inhibin subunit beta A IDA RGD PMID:27477354 RGD:151665478 NCBI chr17:53,787,159...53,810,942 JBrowse link
G Itga2 integrin subunit alpha 2 IMP RGD PMID:10867645 RGD:2307406 NCBI chr 2:46,520,345...46,621,487 JBrowse link
G Larp6 La ribonucleoprotein 6, translational regulator involved_in ISO (PMID:21746880) RGD PMID:21746880 NCBI chr 8:61,183,744...61,205,548 JBrowse link
G Ltbp1 latent transforming growth factor beta binding protein 1 IMP RGD PMID:9607192 RGD:10412058 NCBI chr 6:25,781,625...26,177,346 JBrowse link
G Mir21 microRNA 21 IDA RGD PMID:29084974 RGD:41404715 NCBI chr10:71,902,600...71,902,691 JBrowse link
G Mkx mohawk homeobox acts_upstream_of_or_within ISO MGI:4461224 (PMID:20498044) RGD PMID:20498044 NCBI chr17:55,077,073...55,156,877 JBrowse link
G Mrtfa myocardin related transcription factor A IMP RGD PMID:31928221 PMID:23325387 RGD:529195969, RGD:596933101 NCBI chr 7:112,544,305...112,714,418 JBrowse link
G Myb MYB proto-oncogene, transcription factor IMP RGD PMID:15534927 RGD:11532676 NCBI chr 1:15,939,771...15,973,367 JBrowse link
G Pdgfb platelet derived growth factor subunit B IMP RGD PMID:15358192 RGD:10449487 NCBI chr 7:113,419,882...113,438,343 JBrowse link
G Pdgfrb platelet derived growth factor receptor beta IMP RGD PMID:15978205 RGD:2292205 NCBI chr18:56,770,348...56,809,228 JBrowse link
G Prdx5 peroxiredoxin 5 involved_in ISO (PMID:15276323) RGD PMID:15276323 NCBI chr 1:204,099,826...204,103,589 JBrowse link
G Rgcc regulator of cell cycle involved_in ISO (PMID:19158077) RGD PMID:19158077 NCBI chr15:54,662,483...54,675,320 JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (PMID:18802027), (PMID:19362560) RGD PMID:18802027 PMID:19362560 NCBI chr 7:108,176,608...108,178,626 JBrowse link
G Serpinb7 serpin family B member 7 IMP RGD PMID:21945418 RGD:7207383 NCBI chr13:23,369,830...23,442,205 JBrowse link
G Serpine1 serpin family E member 1 IMP RGD PMID:15828931 RGD:13208547 NCBI chr12:25,237,977...25,248,356 JBrowse link
G Serpinf2 serpin family F member 2 involved_in ISO (PMID:17958745)
(PMID:18436805)
RGD PMID:17958745 PMID:18436805 NCBI chr10:60,272,400...60,280,506 JBrowse link
G Suco SUN domain containing ossification factor involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:20440000)
UniProt
Ensembl
RGD
PMID:20440000 GO_REF:0000024 GO_REF:0000107 NCBI chr13:74,192,808...74,257,896 JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in IMP
ISO
ISS
RNAcentral:URS000024463E_9606 (PMID:11158066), (PMID:19734317), (PMID:22269326), (PMID:25310401)
GO_REF:0000024
(PMID:19734317)
RGD
UniProt
PMID:11158066 PMID:19734317 PMID:22269326 PMID:25310401 PMID:26923362 GO_REF:0000024, RGD:11073665 NCBI chr 1:90,324,312...90,340,627 JBrowse link
G Tgfb3 transforming growth factor, beta 3 involved_in ISO
ISS
(PMID:11158066)
GO_REF:0000024
RGD
AgBase
PMID:11158066 GO_REF:0000024 NCBI chr 6:111,435,170...111,457,646 JBrowse link
G Tnfrsf12a TNF receptor superfamily member 12A IMP RGD PMID:23325387 RGD:596933101 NCBI chr10:13,211,670...13,213,666 JBrowse link
G Ucn urocortin IDA RGD PMID:11087261 RGD:1642796 NCBI chr 6:30,958,086...30,958,916 JBrowse link
G Uts2 urotensin 2 IDA RGD PMID:17184580 PMID:18475149 RGD:2306814, RGD:2306811 NCBI chr 5:161,450,846...161,456,235 JBrowse link
G Vim vimentin involved_in IEA
ISO
GO_REF:0000107
(PMID:21746880)
Ensembl
RGD
PMID:21746880 GO_REF:0000107 NCBI chr17:81,577,261...81,585,746 JBrowse link
G Wnt4 Wnt family member 4 involved_in ISO
IEA
(PMID:17720811)
GO_REF:0000107
RGD
Ensembl
PMID:17720811 GO_REF:0000107 NCBI chr 5:154,797,245...154,818,565 JBrowse link
positive regulation of collagen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO MGI:2176236 (PMID:19834056) RGD PMID:19834056 NCBI chr14:1,031,588...1,059,494 JBrowse link
G Vsir V-set immunoregulatory receptor involved_in ISO (PMID:20666777) RGD PMID:20666777 NCBI chr20:28,281,582...28,307,262 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20534
    cellular process 19523
      positive regulation of cellular process 6418
        positive regulation of metabolic process 3824
          positive regulation of collagen metabolic process 43
            positive regulation of collagen biosynthetic process 40
            positive regulation of collagen catabolic process 2
Path 2
Term Annotations click to browse term
  biological_process 20534
    biological regulation 13821
      regulation of biological process 13375
        positive regulation of biological process 6760
          positive regulation of cellular process 6418
            positive regulation of metabolic process 3824
              positive regulation of collagen metabolic process 43
                positive regulation of collagen biosynthetic process 40
                positive regulation of collagen catabolic process 2
paths to the root