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ONTOLOGY REPORT - ANNOTATIONS


Term:negative regulation of collagen metabolic process
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Accession:GO:0010713 term browser browse the term
Definition:Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the metabolism of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.



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negative regulation of collagen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADORA2B adenosine A2b receptor ISO RGD PMID:9535419 RGD:2316149 NCBI chr12:59,431,834...59,449,701
Ensembl chr12:59,431,513...59,449,672
JBrowse link
G AGER advanced glycosylation end-product specific receptor ISO RGD PMID:21872885 RGD:7245949 NCBI chr 7:24,218,116...24,221,162
Ensembl chr 7:24,218,120...24,221,162
JBrowse link
G CYGB cytoglobin ISO RGD PMID:20719976 RGD:9685174 NCBI chr12:4,977,245...4,988,283 JBrowse link
G CYP7A1 cytochrome P450 family 7 subfamily A member 1 ISO RGD PMID:15521018 RGD:15045602 NCBI chr 4:74,343,101...74,372,628
Ensembl chr 4:74,343,123...74,372,621
JBrowse link
G EMILIN1 elastin microfibril interfacer 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:112,031,910...112,039,928
Ensembl chr 3:112,031,917...112,046,429
JBrowse link
G ERRFI1 ERBB receptor feedback inhibitor 1 ISO RGD PMID:19204184 RGD:9685562 NCBI chr 6:68,667,651...68,682,629
Ensembl chr 6:68,669,153...68,682,623
JBrowse link
G FN1 fibronectin 1 ISO RGD PMID:15980055 RGD:1625201 NCBI chr15:117,658,158...117,737,145
Ensembl chr15:117,658,099...117,731,014
JBrowse link
G GOT1 glutamic-oxaloacetic transaminase 1 ISO RGD PMID:26880260 RGD:13504840 NCBI chr14:110,608,422...110,635,825
Ensembl chr14:110,608,430...110,635,874
JBrowse link
G IL6 interleukin 6 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:91,506,421...91,510,830
Ensembl chr 9:91,506,421...91,511,263
JBrowse link
G IL6R interleukin 6 receptor involved_in ISO (PMID:12419823) BHF-UCL PMID:12419823 NCBI chr 4:95,322,426...95,381,393
Ensembl chr 4:95,322,433...95,381,282
JBrowse link
G LOC110261221 cytochrome P450 2J2-like ISO RGD PMID:25840911 PMID:29656108 RGD:12904676 RGD:150520032 NCBI chr 6:152,321,816...152,358,179
Ensembl chr 6:152,321,848...152,648,979
JBrowse link
G MIR218-1 microRNA mir-218-1 involved_in ISO (PMID:19913496) BHF-UCL PMID:19913496 NCBI chr 8:15,047,602...15,047,685
Ensembl chr 8:15,047,602...15,047,685
JBrowse link
G MIR218B microRNA mir-218b involved_in ISO (PMID:19913496) BHF-UCL PMID:19913496 NCBI chr16:55,115,926...55,116,009
Ensembl chr16:55,115,926...55,116,009
JBrowse link
G MIR29A microRNA mir-29a involved_in ISO (PMID:20067797) BHF-UCL PMID:20067797 NCBI chr18:18,040,032...18,040,117
Ensembl chr18:18,040,032...18,040,118
JBrowse link
G MIR29B-1 microRNA mir-29b-1 involved_in ISO (PMID:22269326)
(PMID:19913496), (PMID:23221517)
BHF-UCL PMID:19913496 PMID:22269326 PMID:23221517 NCBI chr18:18,039,629...18,039,709
Ensembl chr18:18,039,629...18,039,709
JBrowse link
G MIR29B-2 microRNA mir-29b-2 involved_in ISO (PMID:19913496), (PMID:23221517)
(PMID:22269326)
BHF-UCL PMID:19913496 PMID:22269326 PMID:23221517 NCBI chr 9:135,019,079...135,019,162
Ensembl chr 9:135,019,075...135,019,164
JBrowse link
G NOTCH1 notch receptor 1 ISO RGD PMID:28100501 RGD:152995503
G NPPC natriuretic peptide C ISO RGD PMID:12746286 RGD:1580115 NCBI chr15:132,504,669...132,509,688
Ensembl chr15:132,506,474...132,509,673
JBrowse link
G NR1H4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:15980055 RGD:1625201 NCBI chr 5:83,607,222...83,732,668
Ensembl chr 5:83,604,294...83,684,604
JBrowse link
G PPARD peroxisome proliferator activated receptor delta ISO RGD PMID:17346664 RGD:2324888 NCBI chr 7:31,222,533...31,295,221
Ensembl chr 7:31,222,585...31,295,211
JBrowse link
G PPARG peroxisome proliferator activated receptor gamma ISO RGD PMID:16202214 RGD:8553021 NCBI chr13:68,301,566...68,433,951
Ensembl chr13:68,302,322...68,433,944
JBrowse link
G RAP1A RAP1A, member of RAS oncogene family ISO RGD PMID:22012077 RGD:9850086 NCBI chr 4:108,675,537...108,750,952
Ensembl chr 4:108,676,685...108,743,368
JBrowse link
G RAPGEF3 Rap guanine nucleotide exchange factor 3 ISO RGD PMID:22012077 RGD:9850086 NCBI chr 5:78,101,286...78,134,150
Ensembl chr 5:78,101,299...78,134,105
JBrowse link
negative regulation of collagen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CST3 cystatin C involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:30,471,056...30,474,486
Ensembl chr17:30,470,855...30,474,590
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17340
    negative regulation of biological process 5678
      negative regulation of metabolic process 3292
        negative regulation of collagen metabolic process 24
          negative regulation of collagen biosynthetic process 23
          negative regulation of collagen catabolic process 1
Path 2
Term Annotations click to browse term
  biological_process 17340
    biological regulation 12838
      regulation of biological process 12201
        negative regulation of biological process 5678
          negative regulation of metabolic process 3292
            negative regulation of collagen metabolic process 24
              negative regulation of collagen biosynthetic process 23
              negative regulation of collagen catabolic process 1
paths to the root